RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy14208
(778 letters)
>gnl|CDD|216175 pfam00888, Cullin, Cullin family.
Length = 603
Score = 439 bits (1131), Expect = e-145
Identities = 213/659 (32%), Positives = 342/659 (51%), Gaps = 59/659 (8%)
Query: 14 WPSMRPIVLKLLQQEPVSQNEWQNLFYAVHVVCLWDEKGPSKIVDALKEDIMNFIRHAQQ 73
W + + ++L + S ++ L+ AV+ K K+ + LKE + ++ +
Sbjct: 1 WEKLLDAIDQILL-KSFSSLDYMELYTAVYN--YVPHKLGEKLYNRLKEYLEEYVAALLK 57
Query: 74 RVLAHEEDQALLKAYIQEWSKFLAQCSYLPTPFRQLETSLVNKSVSTSLTNNNNKQKISA 133
+L ++++ LLK Y +EW+KF L F L V +
Sbjct: 58 SILENDDEV-LLKTYYKEWNKFSTSMKILNNIFMYLNRYYVKRKNLD------------- 103
Query: 134 EESTVRVLMLDSWNQSIFNDIKQRLQDSAMKLVQSERNGEAFDSQLVIGVRESYVNLCSN 193
V L LD W +S+F+ IK +L D+ ++L++ ER GE D L+ V + +V L
Sbjct: 104 ---GVYELGLDIWRESLFDPIKDKLIDALLRLIEKERLGEIIDRSLIKNVLDMFVEL--- 157
Query: 194 PEDKLQIYREHFEKAYIAATESFYTVKAAEFLQNNGVESYMKYADAKLHEEELRACKYLE 253
DKL++Y+E FEK ++ AT FY ++++FLQ N V YMK + +L EEE R YL
Sbjct: 158 GLDKLEVYKEDFEKPFLEATSEFYKKESSKFLQENSVSEYMKKVEERLEEEEERVRLYLH 217
Query: 254 SSSSVQLLTDCCVTVLVSSFKNTILAECPKMIKMNETLKLELMMKLLDRIKDGITPMLQD 313
SS+ + L + C VL+ + +E +++ + L M +LL R+ +G+ P+ +
Sbjct: 218 SST-EKKLIEVCEKVLIEKHLEFLHSEFQRLLDNEKIEDLRRMYRLLSRVPNGLEPLRKY 276
Query: 314 LEAHIVNAGLADMIASADIITQDSEKYVERLLELFNQFSKLVKDAFKDDPRFLTARDKAY 373
E HI GLA + A + D + YV+ LLEL +++ LV +AF +D FL A DKA+
Sbjct: 277 FEKHIKKEGLAAVSDLA--VETDPKDYVQTLLELHDKYDSLVNEAFNNDALFLNALDKAF 334
Query: 374 KNVVNDTTVFKLELPTKQCTGIKTLPESKCPELLANYCDMLLRKTPLSKRLTADEIESKL 433
+ +N + SK ELLA YCD LL+K+ K L +E+E KL
Sbjct: 335 EEFINSNS-------------------SKSAELLAKYCDSLLKKS--LKGLNEEELEEKL 373
Query: 434 RNVLLVLKYVQNKDVFMRFHKAHLTRRLILDTSADSEKEENMVEWLRDVGMPADYVNKLA 493
++++ KY+++KDVF +F++ L +RL+ TSA + E+ M+E L+ + +KL
Sbjct: 374 DKIIVLFKYIEDKDVFEKFYRKMLAKRLLNGTSASDDAEKKMIEKLKQE-CGYQFTSKLE 432
Query: 494 RMFQDIKVSQDLNYQFKQSY--RGSKGSIGDSINIKILNAGAWARGSERVTVSLPLELED 551
RMF+DI +S++LN FK S G +++ +L+ G W SLP ELE
Sbjct: 433 RMFKDISLSKELNNSFKNHLENNLDLLSEGIDLSVLVLSTGFWPTLPTEP-FSLPEELEK 491
Query: 552 YIPEVEDFYKKKHSGRKLQWYHHMSNGTITFSNEVGKYDLDVTTFQMAVLFAWNERPLDR 611
+ + E+FY KKHSGRKL W H + G + Y+L V+T+QMAVL +N++ +
Sbjct: 492 ALEKFEEFYSKKHSGRKLTWLHSLGRGELKAEFNDKTYELTVSTYQMAVLLLFNDQ--EE 549
Query: 612 LSFENLLLATELPDPELRRTLWSLVAFPKIKRQILLYSEEVQSPKDFTEHTSFWINQEF 670
L+ E L AT L D LRRTL SL+ + ++ ++F+ +T F +N +F
Sbjct: 550 LTVEELSEATGLSDDLLRRTLQSLLKAKVLLL------TKIPKGEEFSPNTVFSLNSDF 602
>gnl|CDD|227934 COG5647, COG5647, Cullin, a subunit of E3 ubiquitin ligase
[Posttranslational modification, protein turnover,
chaperones].
Length = 773
Score = 244 bits (624), Expect = 7e-70
Identities = 188/750 (25%), Positives = 343/750 (45%), Gaps = 87/750 (11%)
Query: 55 KIVDALKEDIMNFIRHAQQRVLAHEEDQALLKAYIQEWSKFLAQCSYLPTPFRQLETSLV 114
K+VD K I + R + E + L ++ W++F + + F ++ +
Sbjct: 85 KLVDYAKNYIEEY-----NRGRSQENMEEFLDELVKFWNRFTKGATMINHLFLYMDRVYL 139
Query: 115 NK-SVSTSLTNNNNKQKISAEESTVRVLMLDSWNQSIFNDIKQRLQDSAMKLVQSERNGE 173
K +L L L F I L + + V+ R +
Sbjct: 140 KKARYDKTLVFEVY------------SLCLVKEKIESFRLIVDSLINPLLYYVERYRALQ 187
Query: 174 AFDSQLVIGVRESYVNLCS---NPEDKLQIYREHFEKAYIAATESFYTVKAAEFLQNNGV 230
+ D + + ++ +L ++ L Y+ FE ++ T FY ++++E ++ V
Sbjct: 188 SIDRKYIEDAKDMLESLERPSDYKKENLSYYKSVFEPIFLEETWEFYEMESSEVIELLSV 247
Query: 231 ESYMKYADAKLHEEELRACKYLESSSSVQL---LTDCCVTVLVSSFKNTILAECPKMIKM 287
Y++ A L EE YL+ S+ L L D +T + + + + +
Sbjct: 248 TEYLEKAHKILEREEELVEIYLKVSTKKPLLEVLEDVLITRHLDDLEEQG-SGFREALDA 306
Query: 288 NETLKLELMMKLLDRIKDGITPMLQDLEAHIVNAGLADMIASADI--------ITQDSE- 338
+ KL+++ +LL K G+ P+ + E ++ + G+ I + I E
Sbjct: 307 SNLEKLQVLYRLLSETKYGVQPLQEVFERYVKDEGVLINIETNYIFHCKVDVGFLGSREC 366
Query: 339 ---KYVERLLELFNQFSKLVKDAFKDDPRFLTARDKAYKNVVNDTTVFKLELPTKQCTGI 395
YV++LL + F LV ++F+ D + A A+K +N G
Sbjct: 367 LPKLYVQKLLSCHDLFPSLVNESFEGDGSIVKALGNAFKTFIN---------------GN 411
Query: 396 KTLPESKCPELLANYCDMLLRKTPLSKRLTADEIESKLRNVLLVLKYVQNKDVFMRFHKA 455
++ +S E LA Y D LL+K K+ +I+ L++++ + +YV+ KDVF +++K
Sbjct: 412 ES-ADSGPSEYLAKYIDGLLKKD--GKQSFIGKIKDLLQDIITLFRYVEEKDVFEKYYKK 468
Query: 456 HLTRRLILDTSADSEKEENMVEWLRDV-GMPADYVNKLARMFQDIKVSQDLNYQFKQSYR 514
L +RL+ SA ++ E M+ L+ V G ++ +KL MF+DI +S + F+ S +
Sbjct: 469 LLAKRLLNGRSASAQAELKMISMLKKVCGQ--EFTSKLEGMFRDISLSSEFTEAFQHSPQ 526
Query: 515 GSKGSIGDSINIKILNAGAWARGSERVTVSLPLELEDYIPEVEDFYKKKHSGRKLQWYHH 574
+ + + +L W E V++ LP EL + + FY KH+GRKL+WY H
Sbjct: 527 SYNKYL--DLFVWVLTQAYWPLSPEEVSIRLPKELVPILEGFKKFYSSKHNGRKLKWYWH 584
Query: 575 MSNGTITFSNEVGKYDLDVTTF---QMAVLFAWNERPLDRLSFENLLLATELPDPELRRT 631
+ +G + G+ L+++TF Q+ V +N+ + L+FE +L T+L +L+R
Sbjct: 585 LGSGEVKARFNEGQKYLEISTFSVYQLLVFLLFNDH--EELTFEEILELTKLSTDDLKRV 642
Query: 632 LWSLVAFPKIKRQILLYSEEVQSPKDFTEHTSFWINQEFALVKMGKILKRGKINLIGR-- 689
L SL K +LL +++ SP T F++N+ F+ L+R KIN I
Sbjct: 643 LQSLS---CAKLVVLLKDDKLVSPN-----TKFYVNENFS-----SKLERIKINYIAESE 689
Query: 690 -LQLSTEKSKEEDNESIVQLRILRVQEAIIKILKMRKRISNAQLQTELVDILKNMFLPSK 748
+Q + + + + + R +Q I++I+K RK++ + L E++ K+ F P
Sbjct: 690 CMQDNLDTHETVEED-----RQAELQACIVRIMKARKKLKHGDLVKEVIAQHKSRFEPKV 744
Query: 749 KMIKEQIEWLIEQKYMRRDDDDINVFVYLA 778
M+K IE LIE++Y+ R DD ++VYLA
Sbjct: 745 SMVKRAIETLIEKEYLERQADD-EIYVYLA 773
>gnl|CDD|214545 smart00182, CULLIN, Cullin.
Length = 143
Score = 175 bits (446), Expect = 2e-51
Identities = 60/145 (41%), Positives = 90/145 (62%), Gaps = 4/145 (2%)
Query: 442 YVQNKDVFMRFHKAHLTRRLILDTSADSEKEENMVEWLRDV-GMPADYVNKLARMFQDIK 500
Y+Q+KDVF +++K HL +RLIL+ SA + EENM+ L+ G ++ +KL RMF+DI
Sbjct: 1 YIQDKDVFEKYYKKHLAKRLILNRSASDDAEENMITKLKQECGY--EFTSKLERMFRDIS 58
Query: 501 VSQDLNYQFKQSYRGSKGSI-GDSINIKILNAGAWARGSERVTVSLPLELEDYIPEVEDF 559
+S+DLN FK + + +N+++L +G W S V ++LP ELED + E E+F
Sbjct: 59 LSKDLNQSFKDMLENNPSAKPIIDLNVRVLTSGYWPTSSTEVEINLPQELEDALEEFEEF 118
Query: 560 YKKKHSGRKLQWYHHMSNGTITFSN 584
Y KHSGRKL W H + G + +
Sbjct: 119 YLAKHSGRKLTWLHSLGRGEVKANF 143
>gnl|CDD|204512 pfam10557, Cullin_Nedd8, Cullin protein neddylation domain. This
is the neddylation site of cullin proteins which are a
family of structurally related proteins containing an
evolutionarily conserved cullin domain. With the
exception of APC2, each member of the cullin family is
modified by Nedd8 and several cullins function in
Ubiquitin-dependent proteolysis, a process in which the
26S proteasome recognises and subsequently degrades a
target protein tagged with K48-linked poly-ubiquitin
chains. Cullins are molecular scaffolds responsible for
assembling the ROC1/Rbx1 RING-based E3 ubiquitin
ligases, of which several play a direct role in
tumorigenesis. Nedd8/Rub1 is a small ubiquitin-like
protein, which was originally found to be conjugated to
Cdc53, a cullin component of the SCF
(Skp1-Cdc53/CUL1-F-box protein) E3 Ub ligase complex in
Saccharomyces cerevisiae, and Nedd8 modification has now
emerged as a regulatory pathway of fundamental
importance for cell cycle control and for embryogenesis
in metazoans. The only identified Nedd8 substrates are
cullins. Neddylation results in covalent conjugation of
a Nedd8 moiety onto a conserved cullin lysine residue.
Length = 68
Score = 89.9 bits (224), Expect = 4e-22
Identities = 30/68 (44%), Positives = 48/68 (70%)
Query: 705 IVQLRILRVQEAIIKILKMRKRISNAQLQTELVDILKNMFLPSKKMIKEQIEWLIEQKYM 764
+ + R L +Q AI++I+K RK +S+ +L E+++ LK F PS IK++IE LIE++Y+
Sbjct: 1 VEEDRKLEIQAAIVRIMKSRKTLSHNELVAEVIEQLKKRFPPSVADIKKRIESLIEKEYL 60
Query: 765 RRDDDDIN 772
RD+DD N
Sbjct: 61 ERDEDDRN 68
>gnl|CDD|214883 smart00884, Cullin_Nedd8, Cullin protein neddylation domain. This
is the neddylation site of cullin proteins which are a
family of structurally related proteins containing an
evolutionarily conserved cullin domain. With the
exception of APC2, each member of the cullin family is
modified by Nedd8 and several cullins function in
Ubiquitin-dependent proteolysis, a process in which the
26S proteasome recognises and subsequently degrades a
target protein tagged with K48-linked poly-ubiquitin
chains. Cullins are molecular scaffolds responsible for
assembling the ROC1/Rbx1 RING-based E3 ubiquitin
ligases, of which several play a direct role in
tumorigenesis. Nedd8/Rub1 is a small ubiquitin-like
protein, which was originally found to be conjugated to
Cdc53, a cullin component of the SCF
(Skp1-Cdc53/CUL1-F-box protein) E3 Ub ligase complex in
Saccharomyces cerevisiae, and Nedd8 modification has now
emerged as a regulatory pathway of fundamental
importance for cell cycle control and for embryogenesis
in metazoans. The only identified Nedd8 substrates are
cullins. Neddylation results in covalent conjugation of
a Nedd8 moiety onto a conserved cullin lysine residue.
Length = 68
Score = 87.2 bits (217), Expect = 4e-21
Identities = 30/68 (44%), Positives = 50/68 (73%)
Query: 705 IVQLRILRVQEAIIKILKMRKRISNAQLQTELVDILKNMFLPSKKMIKEQIEWLIEQKYM 764
+ + R L +Q AI++I+K RK +S+++L +E+++ LK F PS IK++IE LIE++Y+
Sbjct: 1 VEEDRKLEIQAAIVRIMKSRKTLSHSELVSEVIEQLKKRFKPSVSDIKKRIESLIEREYL 60
Query: 765 RRDDDDIN 772
RD+DD N
Sbjct: 61 ERDEDDPN 68
>gnl|CDD|213044 cd12097, DD_RI_PKA, Dimerization/Docking domain of the Type I
Regulatory subunit of cAMP-dependent protein kinase.
cAMP-dependent protein kinase (PKA) is a
serine/threonine kinase (STK), catalyzing the transfer
of the gamma-phosphoryl group from ATP to
serine/threonine residues on protein substrates. The
inactive PKA holoenzyme is a heterotetramer composed of
two phosphorylated and active catalytic subunits with a
dimer of regulatory (R) subunits. Activation is achieved
through the binding of the important second messenger
cAMP to the R subunits, which leads to the dissociation
of PKA into the R dimer and two active subunits. There
are two classes of R subunits, RI and RII; each exists
as two isoforms (alpha and beta) from distinct genes.
These functionally non-redundant R isoforms allow for
specificity in PKA signaling. RI subunits are
pseudo-substrates as they do not contain a
phosphorylation site in their inhibitory site unlike RII
subunits. RIalpha function is required for normal
development as its deletion is embryonically lethal.
RIbeta is expressed highly in the brain and is
associated with hippocampal function. The R subunit
contains an N-terminal dimerization/docking (D/D)
domain, a linker with an inhibitory sequence, and two
c-AMP binding domains. The D/D domain dimerizes to form
a four-helix bundle that serves as a docking site for
A-kinase-anchoring proteins (AKAPs), which facilitates
the localization of PKA to specific sites in the cell.
PKA is present ubiquitously in cells and interacts with
many different downstream targets. It plays a role in
the regulation of diverse processes such as growth,
development, memory, metabolism, gene expression,
immunity, and lipolysis.
Length = 44
Score = 28.4 bits (64), Expect = 1.1
Identities = 10/26 (38%), Positives = 18/26 (69%), Gaps = 1/26 (3%)
Query: 183 VRESYVNLCSN-PEDKLQIYREHFEK 207
++++ V LC + PE+ + RE+FEK
Sbjct: 14 LKDAIVQLCISRPENPVAFLREYFEK 39
>gnl|CDD|223091 COG0012, COG0012, Predicted GTPase, probable translation factor
[Translation, ribosomal structure and biogenesis].
Length = 372
Score = 31.0 bits (71), Expect = 2.6
Identities = 19/88 (21%), Positives = 39/88 (44%), Gaps = 6/88 (6%)
Query: 665 WINQEFALVKMGKILKRGKINLIGRLQLSTEKSKEEDNESIVQLRILRVQEAIIKILKMR 724
IN E L + L++ RL+ + K+ D E +L +L E ++ K
Sbjct: 128 IINTELIL-WDLESLEKR----WERLEKRAKAGKKLDKELKEELSLLGKLEEHLEEGKPA 182
Query: 725 KRISNAQLQTELVDILKNMFL-PSKKMI 751
+ + ++ E ++ L ++ L +K M+
Sbjct: 183 RGLDLSKWSEEDLEALASLNLLTAKPML 210
>gnl|CDD|233231 TIGR01002, hlyII, beta-channel forming cytolysin. This family of
cytolytic pore-forming proteins includes alpha toxin and
leukocidin F and S subunits from Staphylococcus aureus,
hemolysin II of Bacillus cereus, and related toxins
[Cellular processes, Toxin production and resistance].
Length = 312
Score = 30.1 bits (68), Expect = 4.2
Identities = 23/96 (23%), Positives = 34/96 (35%), Gaps = 25/96 (26%)
Query: 500 KVSQDLNYQFKQSYRGSKGSIGDSINIKILNAGAWARGSERVTVSLPLELEDYIPEVEDF 559
+V L Y S S+ IG SIN GS + ++ DY +E
Sbjct: 132 QVQSTLGYSIGGSIEISENKIGGSIN-----------GSFSFSETIKYVQPDYKTILE-- 178
Query: 560 YKKKHSGRKLQW---YHHMSNGTITFSNEVGKYDLD 592
KH+ +K+ W ++ N G Y D
Sbjct: 179 ---KHTDKKIGWKVKFNSFVNA------GWGPYGRD 205
>gnl|CDD|213049 cd12102, DD_RIbeta_PKA, Dimerization/Docking domain of the Type I
beta Regulatory subunit of cAMP-dependent protein
kinase. cAMP-dependent protein kinase (PKA) is a
serine/threonine kinase (STK), catalyzing the transfer
of the gamma-phosphoryl group from ATP to
serine/threonine residues on protein substrates. The
inactive PKA holoenzyme is a heterotetramer composed of
two phosphorylated and active catalytic subunits with a
dimer of regulatory (R) subunits. Activation is achieved
through the binding of the important second messenger
cAMP to the R subunits, which leads to the dissociation
of PKA into the R dimer and two active subunits. There
are two classes of R subunits, RI and RII; each exists
as two isoforms (alpha and beta) from distinct genes.
These functionally non-redundant R isoforms allow for
specificity in PKA signaling. RI subunits are
pseudo-substrates as they do not contain a
phosphorylation site in their inhibitory site unlike RII
subunits. RIbeta is expressed highly in the brain and is
associated with hippocampal function. The R subunit
contains an N-terminal dimerization/docking (D/D)
domain, a linker with an inhibitory sequence, and two
c-AMP binding domains. The D/D domain dimerizes to form
a four-helix bundle that serves as a docking site for
A-kinase-anchoring proteins (AKAPs), which facilitates
the localization of PKA to specific sites in the cell.
PKA is present ubiquitously in cells and interacts with
many different downstream targets. It plays a role in
the regulation of diverse processes such as growth,
development, memory, metabolism, gene expression,
immunity, and lipolysis.
Length = 54
Score = 27.2 bits (60), Expect = 4.7
Identities = 13/26 (50%), Positives = 18/26 (69%), Gaps = 1/26 (3%)
Query: 183 VRESYVNLC-SNPEDKLQIYREHFEK 207
++E VNLC + PE ++ REHFEK
Sbjct: 21 LKECIVNLCIAKPERPMKFLREHFEK 46
>gnl|CDD|206687 cd01900, YchF, YchF GTPase. YchF is a member of the Obg family,
which includes four other subfamilies of GTPases: Obg,
DRG, Ygr210, and NOG1. Obg is an essential gene that is
involved in DNA replication in C. crescentus and
Streptomyces griseus and is associated with the
ribosome. Several members of the family, including YchF,
possess the TGS domain related to the RNA-binding
proteins. Experimental data and genomic analysis suggest
that YchF may be part of a nucleoprotein complex and may
function as a GTP-dependent translational factor.
Length = 274
Score = 29.3 bits (67), Expect = 6.2
Identities = 27/87 (31%), Positives = 43/87 (49%), Gaps = 12/87 (13%)
Query: 666 INQEFALVKMGKILKRGKINLIGRLQLSTEKSKEEDNESIVQLRILRVQEAIIKILKMRK 725
IN E L + I KR + RL+ +K+K D E+ +L +L E I + L+ K
Sbjct: 124 INTELILADLETIEKR-----LERLE---KKAKSGDKEAKEELELL---EKIKEHLEEGK 172
Query: 726 RISNAQLQTELVDILKNM-FLPSKKMI 751
+L E + ILK++ L +K +I
Sbjct: 173 PARTLELTDEEIKILKSLQLLTAKPVI 199
>gnl|CDD|235798 PRK06416, PRK06416, dihydrolipoamide dehydrogenase; Reviewed.
Length = 462
Score = 29.7 bits (68), Expect = 7.5
Identities = 22/80 (27%), Positives = 34/80 (42%), Gaps = 16/80 (20%)
Query: 266 VTVLVSSFK-NTILAECPKMIKMNETLKLELMMKLLDRIKDGITPMLQDLEAHIVNAGLA 324
V V+ F N K + + ET + +KL+ KDG + L AH+V A +
Sbjct: 370 VKVVKFPFAGN------GKALALGET---DGFVKLIFDKKDG-----EVLGAHMVGARAS 415
Query: 325 DMIASADIITQDSEKYVERL 344
++I A + E E L
Sbjct: 416 ELIQEAQLAIN-WEATPEDL 434
>gnl|CDD|221348 pfam11969, DcpS_C, Scavenger mRNA decapping enzyme C-term binding.
This family consists of several scavenger mRNA decapping
enzymes (DcpS) and is the C-terminal region. DcpS is a
scavenger pyrophosphatase that hydrolyses the residual
cap structure following 3' to 5' decay of an mRNA. The
association of DcpS with 3' to 5' exonuclease exosome
components suggests that these two activities are linked
and there is a coupled exonucleolytic decay-dependent
decapping pathway. The C-terminal domain contains a
histidine triad (HIT) sequence with three histidines
separated by hydrophobic residues. The central histidine
within the DcpS HIT motif is critical for decapping
activity and defines the HIT motif as a new mRNA
decapping domain, making DcpS the first member of the
HIT family of proteins with a defined biological
function.
Length = 113
Score = 27.9 bits (63), Expect = 8.7
Identities = 11/44 (25%), Positives = 18/44 (40%), Gaps = 8/44 (18%)
Query: 732 LQTELVDILKNMFLPSKKMIKEQIEWLIEQKYMRRDDDDINVFV 775
L E + +L +M +KK+ KE KY D + +
Sbjct: 51 LTKEHLPLLGHMREVAKKIAKE--------KYNEGYRDVLRLGF 86
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.318 0.133 0.380
Gapped
Lambda K H
0.267 0.0699 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 39,263,477
Number of extensions: 3880694
Number of successful extensions: 3868
Number of sequences better than 10.0: 1
Number of HSP's gapped: 3845
Number of HSP's successfully gapped: 37
Length of query: 778
Length of database: 10,937,602
Length adjustment: 104
Effective length of query: 674
Effective length of database: 6,324,786
Effective search space: 4262905764
Effective search space used: 4262905764
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 63 (28.1 bits)