RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy14208
         (778 letters)



>d1ldja2 a.118.17.1 (A:17-410) Cullin homolog 1, Cul-1 {Human (Homo
           sapiens) [TaxId: 9606]}
          Length = 394

 Score =  230 bits (586), Expect = 8e-69
 Identities = 103/404 (25%), Positives = 183/404 (45%), Gaps = 41/404 (10%)

Query: 11  EDKWPSMRPIVLKLLQQEPVSQNEWQNLFYAVHVVCLW---------------------D 49
           +  W  +R  + ++  ++ ++++ +  L+  V+  C                        
Sbjct: 2   DQIWDDLRAGIQQVYTRQSMAKSRYMELYTHVYNYCTSVHQSNQARGAGVPPSKSKKGQT 61

Query: 50  EKGPSKIVDALKEDIMNFIRHAQQRVLAHEE---DQALLKAYIQEWSKFLAQCSYLPTPF 106
             G   +   L + +  F+++    +L   E   D+++LK Y Q+W  +      L    
Sbjct: 62  PGGAQFVGLELYKRLKEFLKNYLTNLLKDGEDLMDESVLKFYTQQWEDYRFSSKVLNGIC 121

Query: 107 RQLETSLVNKSVSTSLTNNNNKQKISAEESTVRVLMLDSWNQSIFNDIKQRLQDSAMKLV 166
             L    V +                     +  L L +W   +F  + +++ ++ +KL+
Sbjct: 122 AYLNRHWVRRECDEGRKG----------IYEIYSLALVTWRDCLFRPLNKQVTNAVLKLI 171

Query: 167 QSERNGEAFDSQLVIGVRESYVNLCSNPED------KLQIYREHFEKAYIAATESFYTVK 220
           + ERNGE  +++L+ GV +SYV L  N +D       L +Y+E FE  ++A TE FYT +
Sbjct: 172 EKERNGETINTRLISGVVQSYVELGLNEDDAFAKGPTLTVYKESFESQFLADTERFYTRE 231

Query: 221 AAEFLQNNGVESYMKYADAKLHEEELRACKYLESSSSVQLLTDCCVTVLVSSFKNTILAE 280
           + EFLQ N V  YMK A+A+L EE+ R  +     S+   L   C  VL+         E
Sbjct: 232 STEFLQQNPVTEYMKKAEARLLEEQRR-VQVYLHESTQDELARKCEQVLIEKHLEIFHTE 290

Query: 281 CPKMIKMNETLKLELMMKLLDRIKDGITPMLQDLEAHIVNAGLADMIASADIITQDSEKY 340
              ++  ++   L  M  L+ RI+DG+  + + LE HI N GLA +    +    D + Y
Sbjct: 291 FQNLLDADKNEDLGRMYNLVSRIQDGLGELKKLLETHIHNQGLAAIEKCGEAALNDPKMY 350

Query: 341 VERLLELFNQFSKLVKDAFKDDPRFLTARDKAYKNVVNDTTVFK 384
           V+ +L++  +++ LV  AF +D  F+ A DKA    +N+  V K
Sbjct: 351 VQTVLDVHKKYNALVMSAFNNDAGFVAALDKACGRFINNNAVTK 394


>d2hyec3 e.40.1.1 (C:403-675) Cullin-4A {Human (Homo sapiens)
           [TaxId: 9606]}
          Length = 273

 Score =  214 bits (547), Expect = 1e-64
 Identities = 94/287 (32%), Positives = 148/287 (51%), Gaps = 17/287 (5%)

Query: 401 SKCPELLANYCDMLLRKTPLSKRLTADEIESKLRNVLLVLKYVQNKDVFMRFHKAHLTRR 460
           +K  EL+A + D  LR    +K  T +E+E  L  ++++ +++  KDVF  F+K  L +R
Sbjct: 1   NKPAELIAKHVDSKLRAG--NKEATDEELERTLDKIMILFRFIHGKDVFEAFYKKDLAKR 58

Query: 461 LILDTSADSEKEENMVEWLRDVGMPADYVNKLARMFQDIKVSQDLNYQFKQSYRGSKGSI 520
           L++  SA  + E++M+  L+     A + +KL  MF+D+++S+D+   FKQ  +    S 
Sbjct: 59  LLVGKSASVDAEKSMLSKLKHE-CGAAFTSKLEGMFKDMELSKDIMVHFKQHMQNQSDSG 117

Query: 521 GDSINIKILNAGAWARGSERVTVSLPLELEDYIPEVEDFYKKKHSGRKLQWYHHMSNGTI 580
              + + IL  G W   +  + V L  E+       + FY  KHSGRKLQW   + +  +
Sbjct: 118 PIDLTVNILTMGYWPTYTP-MEVHLTPEMIKLQEVFKAFYLGKHSGRKLQWQTTLGHAVL 176

Query: 581 TFSNEVGKYDLDVTTFQMAVLFAWNERPLDRLSFENLLLATELPDPELRRTLWSLVAFPK 640
               + GK +  V+ FQ  VL  +NE   D  SFE + +AT + D ELRRTL SL     
Sbjct: 177 KAEFKEGKKEFQVSLFQTLVLLMFNEG--DGFSFEEIKMATGIEDSELRRTLQSLA---C 231

Query: 641 IKRQILLYSEEVQSPKDFTEHTSFWINQEFALVKMGKILKRGKINLI 687
            K ++L+ S      K+  +   F  N EF   K+ +I    KIN I
Sbjct: 232 GKARVLIKS---PKGKEVEDGDKFIFNGEFK-HKLFRI----KINQI 270


>d1ldja3 e.40.1.1 (A:411-686) Cullin homolog 1, cul-1 {Human (Homo
           sapiens) [TaxId: 9606]}
          Length = 276

 Score =  214 bits (547), Expect = 1e-64
 Identities = 96/288 (33%), Positives = 149/288 (51%), Gaps = 15/288 (5%)

Query: 399 PESKCPELLANYCDMLLRKTPLSKRLTADEIESKLRNVLLVLKYVQNKDVFMRFHKAHLT 458
             SK PELLA YCD LL+K+  SK     E+E  L  V++V KY+++KDVF +F+   L 
Sbjct: 4   SSSKSPELLARYCDSLLKKS--SKNPEEAELEDTLNQVMVVFKYIEDKDVFQKFYAKMLA 61

Query: 459 RRLILDTSADSEKEENMVEWLRDVGMPADYVNKLARMFQDIKVSQDLNYQFKQSYRGSKG 518
           +RL+   SA  + E +M+  L+      +Y +KL RMFQDI VS+DLN QFK+ +  +  
Sbjct: 62  KRLVHQNSASDDAEASMISKLKQA-CGFEYTSKLQRMFQDIGVSKDLNEQFKK-HLTNSE 119

Query: 519 SIGDSINIKILNAGAWARGSERVTVSLPLELEDYIPEVEDFYKKKHSGRKLQWYHHMSNG 578
            +    +I++L++G+W    +  T +LP ELE        FY  +HSGRKL W + +S G
Sbjct: 120 PLDLDFSIQVLSSGSW-PFQQSCTFALPSELERSYQRFTAFYASRHSGRKLTWLYQLSKG 178

Query: 579 TITFSNEVGKYDLDVTTFQMAVLFAWNERPLDRLSFENLLLATELPDPELRRTLWSLVAF 638
            +  +    +Y L  +TFQMA+L  +N    D  + + L  +T++    L + L  L+  
Sbjct: 179 ELVTNCFKNRYTLQASTFQMAILLQYNTE--DAYTVQQLTDSTQIKMDILAQVLQILL-- 234

Query: 639 PKIKRQILLYSEEVQSPKDFTEHTSFWINQEFALVKMGKILKRGKINL 686
            K K  +L          +    T   +   +   K+     R  IN+
Sbjct: 235 -KSKLLVLEDENANVDEVELKPDTLIKLYLGYKNKKL-----RVNINV 276


>d2hyec2 a.118.17.1 (C:55-401) Cullin-4A {Human (Homo sapiens)
           [TaxId: 9606]}
          Length = 347

 Score =  190 bits (483), Expect = 9e-55
 Identities = 70/374 (18%), Positives = 145/374 (38%), Gaps = 36/374 (9%)

Query: 10  FEDKWPSMRPIVLKLLQQEPVSQNEWQNLFYAVHVVCLWDEKGPSKIVDALKEDIMNFIR 69
            +D W  +   V  +     +  N  + L+ AV  +C    K    +   L++   + ++
Sbjct: 5   TQDTWRKLHEAVRAVQSSTSIRYN-LEELYQAVENLCSH--KVSPMLYKQLRQACEDHVQ 61

Query: 70  HAQQRVLAH-EEDQALLKAYIQEWSKFLAQCSYLPTPFRQLETSLVNKSVSTSLTNNNNK 128
                      +    LK     W     Q   + + F  L+ + V ++           
Sbjct: 62  AQILPFREDSLDSVLFLKKINTCWQDHCRQMIMIRSIFLFLDRTYVLQN----------- 110

Query: 129 QKISAEESTVRVLMLDSWNQSIFND--IKQRLQDSAMKLVQSERNGEAFDSQLVIGVRES 186
               +   ++  + L+ +   I +D  ++ +  D  + L++ ER+GEA D  L+  +   
Sbjct: 111 ----STLPSIWDMGLELFRTHIISDKMVQSKTIDGILLLIERERSGEAVDRSLLRSLLGM 166

Query: 187 YVNLCSNPEDKLQIYREHFEKAYIAATESFYTVKAAEFLQNNGVESYMKYADAKLHEEEL 246
             +L        Q+Y++ FE  ++  T   Y  +    +Q   V  Y+ +   +L EE  
Sbjct: 167 LSDL--------QVYKDSFELKFLEETNCLYAAEGQRLMQEREVPEYLNHVSKRLEEEGD 218

Query: 247 RACKYLESSSSVQLLTDCCVTVLVSSFKNTILA-ECPKMIKMNETLKLELMMKLLDRIKD 305
           R   YL   S+ + L  C    L+      IL      ++  N    L  M +L  R++ 
Sbjct: 219 RVITYL-DHSTQKPLIACVEKQLLGEHLTAILQKGLDHLLDENRVPDLAQMYQLFSRVRG 277

Query: 306 GITPMLQDLEAHIVNAGLADMIASADIITQDSEKYVERLLELFNQFSKLVKDAFKDDPRF 365
           G   +LQ    +I   G A +I       +  +  V+ LL+  ++   +++  F+ + RF
Sbjct: 278 GQQALLQHWSEYIKTFGTAIVIN-----PEKDKDMVQDLLDFKDKVDHVIEVCFQKNERF 332

Query: 366 LTARDKAYKNVVND 379
           +    ++++  +N 
Sbjct: 333 VNLMKESFETFINK 346


>d1iuya_ a.4.5.34 (A:) Cullin-3 homologue {Mouse (Mus musculus)
           [TaxId: 10090]}
          Length = 92

 Score = 99.1 bits (247), Expect = 1e-25
 Identities = 30/92 (32%), Positives = 55/92 (59%)

Query: 687 IGRLQLSTEKSKEEDNESIVQLRILRVQEAIIKILKMRKRISNAQLQTELVDILKNMFLP 746
           +   Q  ++  ++E  + +   R   ++ AI++I+K RK++ +  L  E+   LK  FLP
Sbjct: 1   MAAKQGESDPERKETRQKVDDDRKHEIEAAIVRIMKSRKKMQHNVLVAEVTQQLKARFLP 60

Query: 747 SKKMIKEQIEWLIEQKYMRRDDDDINVFVYLA 778
           S  +IK++IE LIE++Y+ R  +D  V+ Y+A
Sbjct: 61  SPVVIKKRIEGLIEREYLARTPEDRKVYTYVA 92


>d1ldja1 a.4.5.34 (A:687-776) Anaphase promoting complex (APC)
           {Human (Homo sapiens) [TaxId: 9606]}
          Length = 90

 Score = 97.9 bits (244), Expect = 3e-25
 Identities = 30/89 (33%), Positives = 57/89 (64%)

Query: 690 LQLSTEKSKEEDNESIVQLRILRVQEAIIKILKMRKRISNAQLQTELVDILKNMFLPSKK 749
           ++   ++ +E  +++I + R L +Q AI++I+KMRK + + QL  E++  L + F P   
Sbjct: 2   MKTEQKQEQETTHKNIEEDRKLLIQAAIVRIMKMRKVLKHQQLLGEVLTQLSSRFKPRVP 61

Query: 750 MIKEQIEWLIEQKYMRRDDDDINVFVYLA 778
           +IK+ I+ LIE++Y+ R D + + + YLA
Sbjct: 62  VIKKCIDILIEKEYLERVDGEKDTYSYLA 90


>d2hyec1 a.4.5.34 (C:676-759) Cullin-4A {Human (Homo sapiens)
           [TaxId: 9606]}
          Length = 84

 Score = 88.7 bits (220), Expect = 5e-22
 Identities = 30/85 (35%), Positives = 50/85 (58%), Gaps = 2/85 (2%)

Query: 694 TEKSKEEDNESIVQLRILRVQEAIIKILKMRKRISNAQLQTELVDILKNMFLPSKKMIKE 753
           T + +    E + Q R  ++  AI++I+KMRK + +  L +EL + LK    P    +K+
Sbjct: 2   TVEEQVSTTERVFQDRQYQIDAAIVRIMKMRKTLGHNLLVSELYNQLKFPVKPG--DLKK 59

Query: 754 QIEWLIEQKYMRRDDDDINVFVYLA 778
           +IE LI++ YM RD D+ N + Y+A
Sbjct: 60  RIESLIDRDYMERDKDNPNQYHYVA 84


>d2vgla_ a.118.1.10 (A:) Adaptin alpha C subunit N-terminal fragment
           {Mouse (Mus musculus) [TaxId: 10090]}
          Length = 584

 Score = 31.7 bits (71), Expect = 0.42
 Identities = 17/114 (14%), Positives = 38/114 (33%), Gaps = 6/114 (5%)

Query: 250 KYLESSSSVQLLTDCCVTVLVSSFKNTILAECPKMIKMN-ETLKLELMMKL-----LDRI 303
           +YL   S   L +       V +   T++        ++     ++L+  +       +I
Sbjct: 338 RYLALESMCTLASSEFSHEAVKTHIETVINALKTERDVSVRQRAVDLLYAMCDRSNAQQI 397

Query: 304 KDGITPMLQDLEAHIVNAGLADMIASADIITQDSEKYVERLLELFNQFSKLVKD 357
              +   L+  +  I    +  +   A+    D   YV+ +L L       V +
Sbjct: 398 VAEMLSYLETADYSIREEIVLKVAILAEKYAVDYTWYVDTILNLIRIAGDYVSE 451


>d2ezwa1 a.31.1.1 (A:12-61) cAMP-dependent protein kinase type
           I-alpha regulatory subunit {Cow (Bos taurus) [TaxId:
           9913]}
          Length = 50

 Score = 27.0 bits (60), Expect = 1.2
 Identities = 11/26 (42%), Positives = 17/26 (65%), Gaps = 1/26 (3%)

Query: 183 VRESYVNLC-SNPEDKLQIYREHFEK 207
           +++S V LC + PE  +   RE+FEK
Sbjct: 18  LKDSIVQLCTARPERPMAFLREYFEK 43


>d1hmsa_ b.60.1.2 (A:) Muscle fatty acid binding protein (m-fabp)
           {Human (Homo sapiens) [TaxId: 9606]}
          Length = 131

 Score = 27.9 bits (62), Expect = 2.6
 Identities = 2/35 (5%), Positives = 13/35 (37%)

Query: 470 EKEENMVEWLRDVGMPADYVNKLARMFQDIKVSQD 504
              +N  ++++ +G+        +       + ++
Sbjct: 11  VDSKNFDDYMKSLGVGFATRQVASMTKPTTIIEKN 45


>d1v38a_ a.60.1.2 (A:) Sam-domain protein samsn-1 {Mouse (Mus
           musculus) [TaxId: 10090]}
          Length = 78

 Score = 26.5 bits (58), Expect = 2.8
 Identities = 6/32 (18%), Positives = 14/32 (43%), Gaps = 1/32 (3%)

Query: 464 DTSADSEKEENMVEWLRDVGMPADYVNKLARM 495
            +S   E  + + E+L  + +  +Y + L   
Sbjct: 4   GSSGRRENHQTIQEFLERIHLQ-EYTSTLLLN 34


>d1lfoa_ b.60.1.2 (A:) Liver fatty acid binding protein {Rat (Rattus
           norvegicus) [TaxId: 10116]}
          Length = 127

 Score = 27.5 bits (61), Expect = 3.0
 Identities = 6/35 (17%), Positives = 18/35 (51%)

Query: 470 EKEENMVEWLRDVGMPADYVNKLARMFQDIKVSQD 504
           + +EN   +++ +G+P D + K   +    ++  +
Sbjct: 10  QSQENFEPFMKAMGLPEDLIQKGKDIKGVSEIVHE 44


>d1p6pa_ b.60.1.2 (A:) Liver basic fatty acid binding protein,
           LB_FABP {Argentine common toad (Bufo arenarum) [TaxId:
           38577]}
          Length = 125

 Score = 27.1 bits (60), Expect = 3.8
 Identities = 10/35 (28%), Positives = 18/35 (51%)

Query: 470 EKEENMVEWLRDVGMPADYVNKLARMFQDIKVSQD 504
             +EN   +LR VG+P D +     +   I++ Q+
Sbjct: 9   YAQENYENFLRTVGLPEDIIKVAKDVNPVIEIEQN 43


>d1tw4a_ b.60.1.2 (A:) Liver basic fatty acid binding protein,
           LB_FABP {Chicken (Gallus gallus) [TaxId: 9031]}
          Length = 125

 Score = 27.1 bits (60), Expect = 4.7
 Identities = 7/35 (20%), Positives = 17/35 (48%)

Query: 470 EKEENMVEWLRDVGMPADYVNKLARMFQDIKVSQD 504
             +EN  E+L+ + +P D +     +   +++ Q 
Sbjct: 9   YAQENYEEFLKALALPEDLIKMARDIKPIVEIQQK 43


>d1crba_ b.60.1.2 (A:) Cellular retinol-binding protein II (CRBP)
           {Rat (Rattus norvegicus) [TaxId: 10116]}
          Length = 134

 Score = 27.1 bits (60), Expect = 5.0
 Identities = 8/35 (22%), Positives = 14/35 (40%)

Query: 470 EKEENMVEWLRDVGMPADYVNKLARMFQDIKVSQD 504
              EN  E+LR + +          +  D ++ QD
Sbjct: 11  LSNENFEEYLRALDVNVALRKIANLLKPDKEIVQD 45


>d1ifca_ b.60.1.2 (A:) Intestinal fatty acid binding protein {Rat
           (Rattus norvegicus) [TaxId: 10116]}
          Length = 131

 Score = 26.8 bits (59), Expect = 5.5
 Identities = 6/37 (16%), Positives = 17/37 (45%)

Query: 470 EKEENMVEWLRDVGMPADYVNKLARMFQDIKVSQDLN 506
           ++ EN  +++  +G+        A     + ++Q+ N
Sbjct: 9   DRNENYEKFMEKMGINVVKRKLGAHDNLKLTITQEGN 45


>d1pprm2 a.131.1.1 (M:157-312) Peridinin-chlorophyll protein
           {Dinoflagellate (Amphidinium carterae) [TaxId: 2961]}
          Length = 156

 Score = 26.8 bits (59), Expect = 6.2
 Identities = 15/56 (26%), Positives = 18/56 (32%), Gaps = 9/56 (16%)

Query: 283 KMIKMNETLKLELM-------MKLLDRIKDGITPMLQDLEAHIVNAGLADMIASAD 331
           KMI M        +        K +  I         D  A  VNA L  +IAS  
Sbjct: 53  KMIVMGAQADGNALKAAAEAHHKAIGSIDATGVTSAADYAA--VNAALGRVIASVP 106


>d1o1va_ b.60.1.2 (A:) Ileal lipid-binding protein {Human (Homo
           sapiens) [TaxId: 9606]}
          Length = 127

 Score = 26.7 bits (59), Expect = 6.2
 Identities = 13/49 (26%), Positives = 24/49 (48%), Gaps = 1/49 (2%)

Query: 470 EKEENMVEWLRDVGMPADYVNKLARMFQDIKVSQDLN-YQFKQSYRGSK 517
           E E+N  E+++ +G+ +D + K        +V QD   + + Q Y G  
Sbjct: 9   ESEKNYDEFMKLLGISSDVIEKARNFKIVTEVQQDGQDFTWSQHYSGGH 57


>d1vkya_ e.53.1.1 (A:) Queuosine biosynthesis protein queA
           {Thermotoga maritima [TaxId: 2336]}
          Length = 332

 Score = 27.3 bits (60), Expect = 6.6
 Identities = 9/42 (21%), Positives = 18/42 (42%), Gaps = 3/42 (7%)

Query: 343 RLLELFNQFSKLVKDAFKDDPRFLTARDKAYKNVVNDTTVFK 384
           RL+ L  +  ++    F++   +L   D     V+N + V  
Sbjct: 24  RLMVLHRKTQRIEHRIFREIIEYLEPGDLL---VLNVSKVIP 62


>d1b56a_ b.60.1.2 (A:) Epidermal fatty acid binding protein {Human
           (Homo sapiens) [TaxId: 9606]}
          Length = 133

 Score = 26.4 bits (58), Expect = 7.0
 Identities = 6/44 (13%), Positives = 15/44 (34%), Gaps = 1/44 (2%)

Query: 470 EKEENMVEWLRDVGMPADYVNKLARMFQDIKVSQDLN-YQFKQS 512
              +   E+++++G+        A    D  ++ D      K  
Sbjct: 12  VDSKGFDEYMKELGVGIALRKMGAMAKPDCIITCDGKNLTIKTE 55


>d2fefa2 a.254.1.1 (A:135-293) Hypothetical protein PA2201
           {Pseudomonas aeruginosa [TaxId: 287]}
          Length = 159

 Score = 26.7 bits (59), Expect = 7.3
 Identities = 6/23 (26%), Positives = 8/23 (34%)

Query: 79  EEDQALLKAYIQEWSKFLAQCSY 101
             D   L  Y+Q   +   Q S 
Sbjct: 82  GSDAQALAPYLQSQYREFFQLSP 104


>d1wdia_ e.53.1.1 (A:) Queuosine biosynthesis protein queA {Thermus
           thermophilus [TaxId: 274]}
          Length = 344

 Score = 27.3 bits (60), Expect = 7.4
 Identities = 29/156 (18%), Positives = 52/156 (33%), Gaps = 10/156 (6%)

Query: 343 RLLELFNQFSKLVKDA-FKDDPRFLTARDKAYKNVVNDTTVFKLELPTKQCTG--IKTLP 399
           RL+ ++ +    V     +D P FL   D     V N++ V    L  ++ TG  ++ L 
Sbjct: 27  RLMVVYREGPFRVAHKRVRDLPEFLRPGDVL---VFNESKVIPARLLARKPTGGKVEILL 83

Query: 400 ESKCPELLANYCDMLLRKTPLSKRLTADEIESKLRNVLLVLKYVQNKDVFMRFHKAHLTR 459
             +    L        RK P   RL     +       L  + V  ++  +R  +     
Sbjct: 84  VRERSPGLWEALLGPARKAPPGTRLLLLSPKDLAPVPGLQAEVVAVEEDGVRLLRFQ--- 140

Query: 460 RLILDTSADSEKEENMVEWLRDVGMPADYVNKLARM 495
              L    +   E  +  +++       Y    AR 
Sbjct: 141 -GDLVAHLEEVGEVPLPPYIKAKIPMERYQTVYARR 175


>d1lpja_ b.60.1.2 (A:) Cellular retinol-binding protein IV {Human
           (Homo sapiens) [TaxId: 9606]}
          Length = 133

 Score = 26.3 bits (58), Expect = 8.5
 Identities = 14/127 (11%), Positives = 35/127 (27%), Gaps = 31/127 (24%)

Query: 470 EKEENMVEWLRDVGMPADYVNKLARMFQDIKVSQDLNYQFKQSYRGSKGSIGDSINIKIL 529
              +N   ++  +G+          +     + Q+                GDS  I   
Sbjct: 11  LSSDNFEGYMLALGIDFATRKIAKLLKPQKVIEQN----------------GDSFTIHTN 54

Query: 530 NAGAWARGSERVTVSLPLELEDYIPEVEDFYKKKHSGRKLQWYHHMSNGTITFSNEVGKY 589
           ++      +  V   +  E ++    ++         RK +      N  +T    + K 
Sbjct: 55  SSL----RNYFVKFKVGEEFDEDNRGLD--------NRKCKSLVIWDNDRLTC---IQKG 99

Query: 590 DLDVTTF 596
           +     +
Sbjct: 100 EKKNRGW 106


>d1mp8a_ d.144.1.7 (A:) Focal adhesion kinase 1 (fak) {Human (Homo
           sapiens) [TaxId: 9606]}
          Length = 273

 Score = 27.0 bits (59), Expect = 8.8
 Identities = 9/37 (24%), Positives = 16/37 (43%), Gaps = 1/37 (2%)

Query: 401 SKCPELLANYCDMLLRKTPLSKRLTADEIESKLRNVL 437
             CP  L +         P S+R    E++++L  +L
Sbjct: 232 PNCPPTLYSLMTKCWAYDP-SRRPRFTELKAQLSTIL 267


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.318    0.133    0.380 

Gapped
Lambda     K      H
   0.267   0.0567    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 2,829,693
Number of extensions: 135101
Number of successful extensions: 492
Number of sequences better than 10.0: 1
Number of HSP's gapped: 471
Number of HSP's successfully gapped: 43
Length of query: 778
Length of database: 2,407,596
Length adjustment: 92
Effective length of query: 686
Effective length of database: 1,144,436
Effective search space: 785083096
Effective search space used: 785083096
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 57 (26.1 bits)