BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy14209
(119 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1XQU|A Chain A, Hit Family Hydrolase From Clostridium Thermocellum Cth-393
pdb|1XQU|B Chain B, Hit Family Hydrolase From Clostridium Thermocellum Cth-393
Length = 147
Score = 42.0 bits (97), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 27/70 (38%), Positives = 38/70 (54%), Gaps = 11/70 (15%)
Query: 6 KIIFK--PNTWWFVTDNDVVAFPDIKPAAKHHTLVISKQHVL--------NAKVLTSEHK 55
KII + P+T ++ D V+A DI PAA H L+I K+H+ NA++L HK
Sbjct: 41 KIIKRELPSTIYY-EDERVIAIKDINPAAPVHVLIIPKEHIANVKEINESNAQILIDIHK 99
Query: 56 ALVQWLEDLS 65
A + EDL
Sbjct: 100 AANKVAEDLG 109
>pdb|3L7X|A Chain A, The Crystal Structure Of Smu.412c From Streptococcus
Mutans Ua159
Length = 173
Score = 41.2 bits (95), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 21/38 (55%), Positives = 24/38 (63%)
Query: 19 DNDVVAFPDIKPAAKHHTLVISKQHVLNAKVLTSEHKA 56
D DV+AF DI A K HTLVI K+HV NA +T A
Sbjct: 56 DEDVLAFLDISQATKGHTLVIPKEHVRNALEMTQTQAA 93
>pdb|3OJ7|A Chain A, Crystal Structure Of A Histidine Triad Family Protein
From Entamoeba Histolytica, Bound To Sulfate
pdb|3OMF|A Chain A, Crystal Structure Of A Histidine Triad Family Protein
From Entamoeba Histolytica, Bound To Amp
pdb|3OXK|A Chain A, Crystal Structure Of A Histidine Triad Family Protein
From Entamoeba Histolytica, Bound To Gmp
Length = 117
Score = 37.7 bits (86), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 19/48 (39%), Positives = 30/48 (62%), Gaps = 1/48 (2%)
Query: 11 PNTWWFVTDNDVVAFPDIKPAAKHHTLVISKQHVLNAKVLTSEHKALV 58
P+T + D+++ AF DI P A H LVI KQH+ + +T E++A +
Sbjct: 20 PSTIVY-EDDEIFAFKDINPIAPIHILVIPKQHIASLNEITEENEAFI 66
>pdb|3P0T|A Chain A, Crystal Structure Of An Hit-Like Protein From
Mycobacterium Paratuberculosis
pdb|3P0T|B Chain B, Crystal Structure Of An Hit-Like Protein From
Mycobacterium Paratuberculosis
Length = 138
Score = 37.0 bits (84), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 30/96 (31%), Positives = 45/96 (46%), Gaps = 3/96 (3%)
Query: 2 SFLSKIIFKPNTWWFV-TDNDVVAFPDIKPAAKHHTLVISKQHVLNAKVLTSEHKALVQW 60
S +KII + FV D+DVVAF I+P + HTLV+ ++ + N + + S V
Sbjct: 7 SIFTKIINRELPGRFVYEDDDVVAFLTIEPMTQGHTLVVPREEIDNWQDVDSAAFNRVMG 66
Query: 61 LEDLSAITYLCLMVIFHRYGFHWPPFYSIGHLHLHV 96
+ L +C R G + HLH+HV
Sbjct: 67 VSQLIG-KAVCKAFRTERSGLIIAGL-EVPHLHVHV 100
>pdb|3LB5|A Chain A, Crystal Structure Of Hit-Like Protein Involved In
Cell-Cycle Regulation From Bartonella Henselae With
Unknown Ligand
pdb|3LB5|B Chain B, Crystal Structure Of Hit-Like Protein Involved In
Cell-Cycle Regulation From Bartonella Henselae With
Unknown Ligand
pdb|3LB5|C Chain C, Crystal Structure Of Hit-Like Protein Involved In
Cell-Cycle Regulation From Bartonella Henselae With
Unknown Ligand
pdb|3LB5|D Chain D, Crystal Structure Of Hit-Like Protein Involved In
Cell-Cycle Regulation From Bartonella Henselae With
Unknown Ligand
Length = 161
Score = 34.3 bits (77), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 27/85 (31%), Positives = 41/85 (48%), Gaps = 9/85 (10%)
Query: 19 DNDVVAFPDIKPAAKHHTLVISKQHVLNAKVLTSEHKALVQWLEDLSAITYLCLMVIFHR 78
D+DV+AF DI P A HTLVI K+ N +L ++ + L ++ + I + F
Sbjct: 48 DDDVIAFMDIMPQAPGHTLVIPKKGSRN--LLDADTETLFPVIKAVQKIAK-AVKKAFQA 104
Query: 79 YGFHWPPF------YSIGHLHLHVI 97
G F ++ HLH H+I
Sbjct: 105 DGITVMQFNEAASQQTVYHLHFHII 129
>pdb|4EQE|A Chain A, Crystal Structure Of Histidine Triad Nucleotide-Binding
Protein 1 (Hint1) From Human Complexed With Lys-Ams
pdb|4EQE|B Chain B, Crystal Structure Of Histidine Triad Nucleotide-Binding
Protein 1 (Hint1) From Human Complexed With Lys-Ams
pdb|4EQG|A Chain A, Crystal Structure Of Histidine Triad Nucleotide-Binding
Protein 1 (Hint1) From Human Complexed With Ala-Ams
pdb|4EQG|B Chain B, Crystal Structure Of Histidine Triad Nucleotide-Binding
Protein 1 (Hint1) From Human Complexed With Ala-Ams
pdb|4EQH|A Chain A, Crystal Structure Of Histidine Triad Nucleotide-Binding
Protein 1 (Hint1) From Human Complexed With Trp-Ams
pdb|4EQH|B Chain B, Crystal Structure Of Histidine Triad Nucleotide-Binding
Protein 1 (Hint1) From Human Complexed With Trp-Ams
Length = 128
Score = 33.5 bits (75), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 29/100 (29%), Positives = 44/100 (44%), Gaps = 17/100 (17%)
Query: 5 SKIIFKPNTWWFVTDNDVVAFPDIKPAAKHHTLVISKQHVLNAKVLTSEHKALVQWLEDL 64
+KIIF+ D+ +AF DI P A H LVI K+H+ V + ++L L L
Sbjct: 31 AKIIFE--------DDRCLAFHDISPQAPTHFLVIPKKHISQISVAEDDDESL---LGHL 79
Query: 65 SAITYLCLMVIFHRYGFHW------PPFYSIGHLHLHVIA 98
+ C + G+ S+ H+HLHV+
Sbjct: 80 MIVGKKCAADLGLNKGYRMVVNEGSDGGQSVYHVHLHVLG 119
>pdb|1KPA|A Chain A, Pkci-1-Zinc
pdb|1KPA|B Chain B, Pkci-1-Zinc
pdb|1KPC|A Chain A, Pkci-1-Apo+zinc
pdb|1KPC|B Chain B, Pkci-1-Apo+zinc
pdb|1KPC|C Chain C, Pkci-1-Apo+zinc
pdb|1KPC|D Chain D, Pkci-1-Apo+zinc
pdb|1KPE|A Chain A, Pkci-Transition State Analog
pdb|1KPF|A Chain A, Pkci-Substrate Analog
pdb|1AV5|A Chain A, Pkci-Substrate Analog
pdb|1AV5|B Chain B, Pkci-Substrate Analog
pdb|1KPE|B Chain B, Pkci-Transition State Analog
Length = 126
Score = 33.5 bits (75), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 29/100 (29%), Positives = 44/100 (44%), Gaps = 17/100 (17%)
Query: 5 SKIIFKPNTWWFVTDNDVVAFPDIKPAAKHHTLVISKQHVLNAKVLTSEHKALVQWLEDL 64
+KIIF+ D+ +AF DI P A H LVI K+H+ V + ++L L L
Sbjct: 29 AKIIFE--------DDRCLAFHDISPQAPTHFLVIPKKHISQISVAEDDDESL---LGHL 77
Query: 65 SAITYLCLMVIFHRYGFHW------PPFYSIGHLHLHVIA 98
+ C + G+ S+ H+HLHV+
Sbjct: 78 MIVGKKCAADLGLNKGYRMVVNEGSDGGQSVYHVHLHVLG 117
>pdb|3TW2|A Chain A, High Resolution Structure Of Human Histidine Triad
Nucleotide-binding Protein 1 (hhint1)/amp Complex In A
Monoclinic Space Group
pdb|3TW2|B Chain B, High Resolution Structure Of Human Histidine Triad
Nucleotide-binding Protein 1 (hhint1)/amp Complex In A
Monoclinic Space Group
Length = 126
Score = 33.5 bits (75), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 29/100 (29%), Positives = 44/100 (44%), Gaps = 17/100 (17%)
Query: 5 SKIIFKPNTWWFVTDNDVVAFPDIKPAAKHHTLVISKQHVLNAKVLTSEHKALVQWLEDL 64
+KIIF+ D+ +AF DI P A H LVI K+H+ V + ++L L L
Sbjct: 29 AKIIFE--------DDRCLAFHDISPQAPTHFLVIPKKHISQISVAEDDDESL---LGHL 77
Query: 65 SAITYLCLMVIFHRYGFHW------PPFYSIGHLHLHVIA 98
+ C + G+ S+ H+HLHV+
Sbjct: 78 MIVGKKCAADLGLNKGYRMVVNEGSDGGQSVYHVHLHVLG 117
>pdb|1KPB|A Chain A, Pkci-1-Apo
pdb|1KPB|B Chain B, Pkci-1-Apo
Length = 125
Score = 33.5 bits (75), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 29/100 (29%), Positives = 44/100 (44%), Gaps = 17/100 (17%)
Query: 5 SKIIFKPNTWWFVTDNDVVAFPDIKPAAKHHTLVISKQHVLNAKVLTSEHKALVQWLEDL 64
+KIIF+ D+ +AF DI P A H LVI K+H+ V + ++L L L
Sbjct: 28 AKIIFE--------DDRCLAFHDISPQAPTHFLVIPKKHISQISVAEDDDESL---LGHL 76
Query: 65 SAITYLCLMVIFHRYGFHW------PPFYSIGHLHLHVIA 98
+ C + G+ S+ H+HLHV+
Sbjct: 77 MIVGKKCAADLGLNKGYRMVVNEGSDGGQSVYHVHLHVLG 116
>pdb|3O1C|A Chain A, High Resolution Crystal Structure Of Histidine Triad
Nucleotide- Binding Protein 1 (Hint1) C38a Mutant From
Rabbit Complexed With Adenosine
Length = 126
Score = 33.1 bits (74), Expect = 0.040, Method: Compositional matrix adjust.
Identities = 28/100 (28%), Positives = 44/100 (44%), Gaps = 17/100 (17%)
Query: 5 SKIIFKPNTWWFVTDNDVVAFPDIKPAAKHHTLVISKQHVLNAKVLTSEHKALVQWLEDL 64
+KIIF+ D+ +AF DI P A H LVI K+H+ +++ A L L
Sbjct: 29 AKIIFE--------DDQALAFHDISPQAPTHFLVIPKKHISQ---ISAAEDADESLLGHL 77
Query: 65 SAITYLCLMVIFHRYGFHW------PPFYSIGHLHLHVIA 98
+ C + + G+ S+ H+HLHV+
Sbjct: 78 MIVGKKCAADLGLKKGYRMVVNEGSDGGQSVYHVHLHVLG 117
>pdb|1RZY|A Chain A, Crystal Structure Of Rabbit Hint Complexed With N-
Ethylsulfamoyladenosine
pdb|3QGZ|A Chain A, Re-Investigated High Resolution Crystal Structure Of
Histidine Triad Nucleotide-Binding Protein 1 (Hint1)
From Rabbit Complexed With Adenosine
Length = 126
Score = 33.1 bits (74), Expect = 0.045, Method: Compositional matrix adjust.
Identities = 28/100 (28%), Positives = 44/100 (44%), Gaps = 17/100 (17%)
Query: 5 SKIIFKPNTWWFVTDNDVVAFPDIKPAAKHHTLVISKQHVLNAKVLTSEHKALVQWLEDL 64
+KIIF+ D+ +AF DI P A H LVI K+H+ +++ A L L
Sbjct: 29 AKIIFE--------DDQCLAFHDISPQAPTHFLVIPKKHISQ---ISAAEDADESLLGHL 77
Query: 65 SAITYLCLMVIFHRYGFHW------PPFYSIGHLHLHVIA 98
+ C + + G+ S+ H+HLHV+
Sbjct: 78 MIVGKKCAADLGLKKGYRMVVNEGSDGGQSVYHVHLHVLG 117
>pdb|3RHN|A Chain A, Histidine Triad Nucleotide-Binding Protein (Hint) From
Rabbit Complexed With Gmp
pdb|4RHN|A Chain A, Histidine Triad Nucleotide-binding Protein (hint) From
Rabbit Complexed With Adenosine
pdb|5RHN|A Chain A, Histidine Triad Nucleotide-Binding Protein (Hint) From
Rabbit Complexed With 8-Br-Amp
pdb|6RHN|A Chain A, Histidine Triad Nucleotide-Binding Protein (Hint) From
Rabbit Without Nucleotide
Length = 115
Score = 33.1 bits (74), Expect = 0.046, Method: Compositional matrix adjust.
Identities = 28/100 (28%), Positives = 44/100 (44%), Gaps = 17/100 (17%)
Query: 5 SKIIFKPNTWWFVTDNDVVAFPDIKPAAKHHTLVISKQHVLNAKVLTSEHKALVQWLEDL 64
+KIIF+ D+ +AF DI P A H LVI K+H+ +++ A L L
Sbjct: 18 AKIIFE--------DDQCLAFHDISPQAPTHFLVIPKKHISQ---ISAAEDADESLLGHL 66
Query: 65 SAITYLCLMVIFHRYGFHW------PPFYSIGHLHLHVIA 98
+ C + + G+ S+ H+HLHV+
Sbjct: 67 MIVGKKCAADLGLKKGYRMVVNEGSDGGQSVYHVHLHVLG 106
>pdb|3SPD|A Chain A, Crystal Structure Of Aprataxin Ortholog Hnt3 In Complex
With Dna
pdb|3SPD|B Chain B, Crystal Structure Of Aprataxin Ortholog Hnt3 In Complex
With Dna
pdb|3SPD|C Chain C, Crystal Structure Of Aprataxin Ortholog Hnt3 In Complex
With Dna
pdb|3SPD|D Chain D, Crystal Structure Of Aprataxin Ortholog Hnt3 In Complex
With Dna
pdb|3SPL|A Chain A, Crystal Structure Of Aprataxin Ortholog Hnt3 In Complex
With Dna And Amp
pdb|3SPL|B Chain B, Crystal Structure Of Aprataxin Ortholog Hnt3 In Complex
With Dna And Amp
pdb|3SPL|C Chain C, Crystal Structure Of Aprataxin Ortholog Hnt3 In Complex
With Dna And Amp
pdb|3SPL|D Chain D, Crystal Structure Of Aprataxin Ortholog Hnt3 In Complex
With Dna And Amp
Length = 204
Score = 32.7 bits (73), Expect = 0.049, Method: Compositional matrix adjust.
Identities = 35/124 (28%), Positives = 61/124 (49%), Gaps = 29/124 (23%)
Query: 1 MSFLSKI---IFKPNTWWFVT--DNDVVAFPDIKPAAKHHTLVISKQ----HVLNAKVLT 51
MSF + I P ++ V D+DVV D+ P +K H L++++ HV +++
Sbjct: 4 MSFRDNLKVYIESPESYKNVIYYDDDVVLVRDMFPKSKMHLLLMTRDPHLTHVHPLEIMM 63
Query: 52 SEHKALVQWL-----EDLSAITYL----CL--------MVIFHRYGFHWPPFYSIGHLHL 94
+H++LV+ L DLS + + CL + + + GFH P S+ +LHL
Sbjct: 64 -KHRSLVEKLVSYVQGDLSGLIFDEARNCLSQQLTNEALANYIKVGFHAGP--SMNNLHL 120
Query: 95 HVIA 98
H++
Sbjct: 121 HIMT 124
>pdb|3SP4|A Chain A, Crystal Structure Of Aprataxin Ortholog Hnt3 From
Schizosaccharomyces Pombe
pdb|3SP4|B Chain B, Crystal Structure Of Aprataxin Ortholog Hnt3 From
Schizosaccharomyces Pombe
Length = 204
Score = 32.7 bits (73), Expect = 0.052, Method: Compositional matrix adjust.
Identities = 35/124 (28%), Positives = 61/124 (49%), Gaps = 29/124 (23%)
Query: 1 MSFLSKI---IFKPNTWWFVT--DNDVVAFPDIKPAAKHHTLVISKQ----HVLNAKVLT 51
MSF + I P ++ V D+DVV D+ P +K H L++++ HV +++
Sbjct: 4 MSFRDNLKVYIESPESYKNVIYYDDDVVLVRDMFPKSKMHLLLMTRDPHLTHVHPLEIMM 63
Query: 52 SEHKALVQWL-----EDLSAITYL----CL--------MVIFHRYGFHWPPFYSIGHLHL 94
+H++LV+ L DLS + + CL + + + GFH P S+ +LHL
Sbjct: 64 -KHRSLVEKLVSYVQGDLSGLIFDEARNCLSQQLTNEALCNYIKVGFHAGP--SMNNLHL 120
Query: 95 HVIA 98
H++
Sbjct: 121 HIMT 124
>pdb|3SZQ|A Chain A, Structure Of An S. Pombe AptxDNAAMPZN COMPLEX
Length = 206
Score = 32.3 bits (72), Expect = 0.074, Method: Compositional matrix adjust.
Identities = 29/101 (28%), Positives = 52/101 (51%), Gaps = 24/101 (23%)
Query: 19 DNDVVAFPDIKPAAKHHTLVISKQ----HVLNAKVLTSEHKALVQWL-----EDLSAITY 69
D+DVV D+ P +K H L++++ HV +++ +H++LV+ L DLS + +
Sbjct: 29 DDDVVLVRDMFPKSKMHLLLMTRDPHLTHVHPLEIMM-KHRSLVEKLVSYVQGDLSGLIF 87
Query: 70 L----CL--------MVIFHRYGFHWPPFYSIGHLHLHVIA 98
CL + + + GFH P S+ +LHLH++
Sbjct: 88 DEARNCLSQQLTNEALCNYIKVGFHAGP--SMNNLHLHIMT 126
>pdb|1Y23|A Chain A, Crystal Structure Of A Member Of Hit Family Of Proteins
From Bacillus Subtilis
pdb|1Y23|B Chain B, Crystal Structure Of A Member Of Hit Family Of Proteins
From Bacillus Subtilis
pdb|1Y23|C Chain C, Crystal Structure Of A Member Of Hit Family Of Proteins
From Bacillus Subtilis
pdb|1Y23|D Chain D, Crystal Structure Of A Member Of Hit Family Of Proteins
From Bacillus Subtilis
pdb|1Y23|E Chain E, Crystal Structure Of A Member Of Hit Family Of Proteins
From Bacillus Subtilis
Length = 145
Score = 31.6 bits (70), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 17/35 (48%), Positives = 19/35 (54%)
Query: 19 DNDVVAFPDIKPAAKHHTLVISKQHVLNAKVLTSE 53
D V+AF DI K HTLVI K H+ N T E
Sbjct: 25 DEHVLAFLDISQVTKGHTLVIPKTHIENVYEFTDE 59
>pdb|3O1Z|A Chain A, High Resolution Crystal Structure Of Histidine Triad
Nucleotide- Binding Protein 1 (Hint1) Double Cysteine
Mutant From Rabbit
Length = 126
Score = 30.0 bits (66), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 29/102 (28%), Positives = 43/102 (42%), Gaps = 21/102 (20%)
Query: 5 SKIIFKPNTWWFVTDNDVVAFPDIKPAAKHHTLVISKQHVLNAKVLTSEHKALVQWL--- 61
+KIIF+ D+ +AF DI P A H LVI K+H+ ++L+ L
Sbjct: 29 AKIIFE--------DDQALAFHDISPQAPTHFLVIPKKHISQISAAEDADESLLGHLMIV 80
Query: 62 -----EDLSAITYLCLMVIFHRYGFHWPPFYSIGHLHLHVIA 98
DL ++V G S+ H+HLHV+
Sbjct: 81 GKKAAADLGLKKGYRMVVNEGSDGGQ-----SVYHVHLHVLG 117
>pdb|3O1X|A Chain A, High Resolution Crystal Structure Of Histidine Triad
Nucleotide- Binding Protein 1 (Hint1) C84a Mutant From
Rabbit Complexed With Adenosine
Length = 126
Score = 29.6 bits (65), Expect = 0.45, Method: Compositional matrix adjust.
Identities = 29/102 (28%), Positives = 43/102 (42%), Gaps = 21/102 (20%)
Query: 5 SKIIFKPNTWWFVTDNDVVAFPDIKPAAKHHTLVISKQHVLNAKVLTSEHKALVQWL--- 61
+KIIF+ D+ +AF DI P A H LVI K+H+ ++L+ L
Sbjct: 29 AKIIFE--------DDQCLAFHDISPQAPTHFLVIPKKHISQISAAEDADESLLGHLMIV 80
Query: 62 -----EDLSAITYLCLMVIFHRYGFHWPPFYSIGHLHLHVIA 98
DL ++V G S+ H+HLHV+
Sbjct: 81 GKKAAADLGLKKGYRMVVNEGSDGGQ-----SVYHVHLHVLG 117
>pdb|4EGU|A Chain A, 0.95a Resolution Structure Of A Histidine Triad Protein
From Clostridium Difficile
pdb|4EGU|B Chain B, 0.95a Resolution Structure Of A Histidine Triad Protein
From Clostridium Difficile
Length = 119
Score = 29.3 bits (64), Expect = 0.54, Method: Compositional matrix adjust.
Identities = 14/33 (42%), Positives = 22/33 (66%), Gaps = 1/33 (3%)
Query: 11 PNTWWFVTDNDVVAFPDIKPAAKHHTLVISKQH 43
P+T + D+ V+AF D+ P A +H LV+ K+H
Sbjct: 17 PSTKVY-EDDRVLAFNDLNPVAPYHILVVPKKH 48
>pdb|1BIF|A Chain A, 6-Phosphofructo-2-KinaseFRUCTOSE-2,6-Bisphosphatase
Bifunctional Enzyme Complexed With Atp-G-S And Phosphate
Length = 469
Score = 27.7 bits (60), Expect = 1.6, Method: Composition-based stats.
Identities = 15/40 (37%), Positives = 22/40 (55%)
Query: 26 PDIKPAAKHHTLVISKQHVLNAKVLTSEHKALVQWLEDLS 65
P + +KH IS Q++ + KV TS+ K +Q E LS
Sbjct: 276 PRGREFSKHLAQFISDQNIKDLKVFTSQMKRTIQTAEALS 315
>pdb|2BIF|A Chain A, 6-Phosphofructo-2-KinaseFRUCTOSE-2,6-Bisphosphatase H256a
Mutant With F6p In Phosphatase Active Site
pdb|2BIF|B Chain B, 6-Phosphofructo-2-KinaseFRUCTOSE-2,6-Bisphosphatase H256a
Mutant With F6p In Phosphatase Active Site
Length = 469
Score = 27.7 bits (60), Expect = 1.6, Method: Composition-based stats.
Identities = 15/40 (37%), Positives = 22/40 (55%)
Query: 26 PDIKPAAKHHTLVISKQHVLNAKVLTSEHKALVQWLEDLS 65
P + +KH IS Q++ + KV TS+ K +Q E LS
Sbjct: 276 PRGREFSKHLAQFISDQNIKDLKVFTSQMKRTIQTAEALS 315
>pdb|3BIF|A Chain A, 6-Phosphofructo-2-KinaseFRUCTOSE-2,6-Bisphosphatase Empty
6-Pf-2k Active Site
Length = 468
Score = 27.7 bits (60), Expect = 1.6, Method: Composition-based stats.
Identities = 15/40 (37%), Positives = 22/40 (55%)
Query: 26 PDIKPAAKHHTLVISKQHVLNAKVLTSEHKALVQWLEDLS 65
P + +KH IS Q++ + KV TS+ K +Q E LS
Sbjct: 275 PRGREFSKHLAQFISDQNIKDLKVFTSQMKRTIQTAEALS 314
>pdb|3IMI|A Chain A, 2.01 Angstrom Resolution Crystal Structure Of A Hit
Family Protein From Bacillus Anthracis Str. 'ames
Ancestor'
pdb|3IMI|B Chain B, 2.01 Angstrom Resolution Crystal Structure Of A Hit
Family Protein From Bacillus Anthracis Str. 'ames
Ancestor'
pdb|3IMI|C Chain C, 2.01 Angstrom Resolution Crystal Structure Of A Hit
Family Protein From Bacillus Anthracis Str. 'ames
Ancestor'
pdb|3IMI|D Chain D, 2.01 Angstrom Resolution Crystal Structure Of A Hit
Family Protein From Bacillus Anthracis Str. 'ames
Ancestor'
Length = 147
Score = 27.7 bits (60), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 17/35 (48%), Positives = 19/35 (54%)
Query: 19 DNDVVAFPDIKPAAKHHTLVISKQHVLNAKVLTSE 53
D V+AF DI K HTLVI K H + LT E
Sbjct: 29 DEHVLAFLDISQVTKGHTLVIPKVHKQDIFALTPE 63
>pdb|1LLW|A Chain A, Structural Studies On The Synchronization Of Catalytic
Centers In Glutamate Synthase: Complex With
2-Oxoglutarate
pdb|1LLZ|A Chain A, Structural Studies On The Synchronization Of Catalytic
Centers In Glutamate Synthase: Reduced Enzyme
pdb|1LM1|A Chain A, Structural Studies On The Synchronization Of Catalytic
Centers In Glutamate Synthase: Native Enzyme
pdb|1OFD|A Chain A, Glutamate Synthase From Synechocystis Sp In Complex With
2-Oxoglutarate At 2.0 Angstrom Resolution
pdb|1OFD|B Chain B, Glutamate Synthase From Synechocystis Sp In Complex With
2-Oxoglutarate At 2.0 Angstrom Resolution
pdb|1OFE|A Chain A, Glutamate Synthase From Synechocystis Sp In Complex With
2-Oxoglutarate And L-Don At 2.45 Angstrom Resolution
pdb|1OFE|B Chain B, Glutamate Synthase From Synechocystis Sp In Complex With
2-Oxoglutarate And L-Don At 2.45 Angstrom Resolution
Length = 1520
Score = 27.3 bits (59), Expect = 2.3, Method: Composition-based stats.
Identities = 11/30 (36%), Positives = 17/30 (56%)
Query: 17 VTDNDVVAFPDIKPAAKHHTLVISKQHVLN 46
V D+D++A PDI+ A H T ++N
Sbjct: 1246 VLDDDILADPDIQEAINHQTTATKTYRLVN 1275
>pdb|3O0M|A Chain A, Crystal Structure Of A Zn-Bound Histidine Triad Family
Protein From Mycobacterium Smegmatis
pdb|3O0M|B Chain B, Crystal Structure Of A Zn-Bound Histidine Triad Family
Protein From Mycobacterium Smegmatis
Length = 149
Score = 27.3 bits (59), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 25/103 (24%), Positives = 44/103 (42%), Gaps = 12/103 (11%)
Query: 19 DNDVVAFPDIKPAAKHHTLVISKQHVLNAKVLTSEHKALVQWLEDLSA-ITYLCLMVIFH 77
D + + DI+P + HTLVI K H ++ LT V + + I H
Sbjct: 25 DENFLGILDIRPFTRGHTLVIPKTHTVD---LTDTPPETVAGMAAVGQRIARAARESGLH 81
Query: 78 RYGFH------WPPFYSIGHLHLHVIAPVS--EMSFLSKIIFK 112
G + F ++ H+HLHV+ + ++SF ++ +
Sbjct: 82 ADGNNIAINDGKAAFQTVFHIHLHVVPRRNGDKLSFAKGMVMR 124
>pdb|3K1L|B Chain B, Crystal Structure Of Fancl
pdb|3K1L|A Chain A, Crystal Structure Of Fancl
Length = 381
Score = 26.9 bits (58), Expect = 2.6, Method: Composition-based stats.
Identities = 21/84 (25%), Positives = 37/84 (44%), Gaps = 11/84 (13%)
Query: 27 DIKPAAKHHTLVISKQHVLNAKVLTSEHKALVQWLEDLSAITYLCLMVIFHRYGFHWPPF 86
D++P + + HVL ++S+HK + L+D YL L + PF
Sbjct: 192 DLRPFYDNFMDIDELCHVLQPSPISSKHKTRLFPLKDR---VYLKLTIA--------DPF 240
Query: 87 YSIGHLHLHVIAPVSEMSFLSKII 110
I + L +I P E++ L ++
Sbjct: 241 ACIASMSLKIIGPTEEVARLRHVL 264
>pdb|2BTV|A Chain A, Atomic Model For Bluetongue Virus (Btv) Core
pdb|2BTV|B Chain B, Atomic Model For Bluetongue Virus (Btv) Core
Length = 901
Score = 26.2 bits (56), Expect = 4.9, Method: Composition-based stats.
Identities = 15/44 (34%), Positives = 24/44 (54%), Gaps = 6/44 (13%)
Query: 30 PAAKHHTLVISKQHVLNAK------VLTSEHKALVQWLEDLSAI 67
PA H + +++ VL + VLT+EH+A++Q D S I
Sbjct: 149 PARDHRGMEVAEPEVLGVEFKNVLPVLTAEHRAMIQNALDGSII 192
>pdb|3KSV|A Chain A, Hypothetical Protein From Leishmania Major
Length = 149
Score = 26.2 bits (56), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 16/40 (40%), Positives = 20/40 (50%)
Query: 22 VVAFPDIKPAAKHHTLVISKQHVLNAKVLTSEHKALVQWL 61
+AF DI P ++ H LVI K+H L E A V L
Sbjct: 34 ALAFMDINPLSRGHMLVIPKEHASCLHELGMEDAADVGVL 73
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.329 0.139 0.479
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,860,380
Number of Sequences: 62578
Number of extensions: 131756
Number of successful extensions: 329
Number of sequences better than 100.0: 32
Number of HSP's better than 100.0 without gapping: 27
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 296
Number of HSP's gapped (non-prelim): 37
length of query: 119
length of database: 14,973,337
effective HSP length: 81
effective length of query: 38
effective length of database: 9,904,519
effective search space: 376371722
effective search space used: 376371722
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.8 bits)
S2: 45 (21.9 bits)