BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy14209
(119 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q28BZ2|HINT3_XENTR Histidine triad nucleotide-binding protein 3 OS=Xenopus tropicalis
GN=hint3 PE=2 SV=1
Length = 153
Score = 101 bits (251), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 47/105 (44%), Positives = 70/105 (66%), Gaps = 3/105 (2%)
Query: 18 TDNDVVAFPDIKPAAKHHTLVISKQHVLNAKVLTSEHKALVQWLEDLSAITYLCLMVIFH 77
+D+D+V F DI+PA HH LV+ K+HV K LT +H L++ + ++ T V
Sbjct: 37 SDDDLVCFKDIRPAVTHHYLVVPKKHVGTCKTLTKDHVQLIKTMMEVGKSTLQKNNVTDL 96
Query: 78 ---RYGFHWPPFYSIGHLHLHVIAPVSEMSFLSKIIFKPNTWWFV 119
R GFH+PPF SI HLHLHV+AP S++ FLS++I++ N++WF+
Sbjct: 97 EDIRLGFHYPPFCSISHLHLHVLAPASQLGFLSRMIYRVNSYWFI 141
Score = 30.4 bits (67), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 8/23 (34%), Positives = 20/23 (86%)
Query: 1 MSFLSKIIFKPNTWWFVTDNDVV 23
+ FLS++I++ N++WF+T ++++
Sbjct: 125 LGFLSRMIYRVNSYWFITADELI 147
>sp|Q9NQE9|HINT3_HUMAN Histidine triad nucleotide-binding protein 3 OS=Homo sapiens
GN=HINT3 PE=1 SV=1
Length = 182
Score = 95.1 bits (235), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 48/116 (41%), Positives = 70/116 (60%), Gaps = 10/116 (8%)
Query: 11 PNTWWFVTDN-DVVAFPDIKPAAKHHTLVISKQHVLNAKVLTSEHKALVQWLEDLSAITY 69
P T +N D++ F DIKPAA HH LV+ K+H+ N + L K V+ +E++ +
Sbjct: 59 PGTELLHCENEDLICFKDIKPAATHHYLVVPKKHIGNCRTL---RKDQVELVENMVTVGK 115
Query: 70 LCLMV------IFHRYGFHWPPFYSIGHLHLHVIAPVSEMSFLSKIIFKPNTWWFV 119
L R GFH PPF SI HLHLHV+APV ++ FLSK++++ N++WF+
Sbjct: 116 TILERNNFTDFTNVRMGFHMPPFCSISHLHLHVLAPVDQLGFLSKLVYRVNSYWFI 171
>sp|Q5R9L4|HINT3_PONAB Histidine triad nucleotide-binding protein 3 OS=Pongo abelii
GN=HINT3 PE=2 SV=1
Length = 182
Score = 95.1 bits (235), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 48/116 (41%), Positives = 70/116 (60%), Gaps = 10/116 (8%)
Query: 11 PNTWWFVTDN-DVVAFPDIKPAAKHHTLVISKQHVLNAKVLTSEHKALVQWLEDLSAITY 69
P T +N D++ F DIKPAA HH LV+ K+H+ N + L K V+ +E++ +
Sbjct: 59 PGTELLHCENEDLICFKDIKPAATHHYLVVPKKHIGNCRTL---RKDQVELVENMVTVGK 115
Query: 70 LCLMV------IFHRYGFHWPPFYSIGHLHLHVIAPVSEMSFLSKIIFKPNTWWFV 119
L R GFH PPF SI HLHLHV+APV ++ FLSK++++ N++WF+
Sbjct: 116 TILERNNFTDFTNVRMGFHMPPFCSISHLHLHVLAPVDQLGFLSKLVYRVNSYWFI 171
>sp|Q9CPS6|HINT3_MOUSE Histidine triad nucleotide-binding protein 3 OS=Mus musculus
GN=Hint3 PE=2 SV=1
Length = 165
Score = 94.0 bits (232), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 51/116 (43%), Positives = 73/116 (62%), Gaps = 8/116 (6%)
Query: 10 KPNTWWFVTDN-DVVAFPDIKPAAKHHTLVISKQHVLNAKVLTSEHKALVQWLEDLSAIT 68
+P T F +N D+V F DIKPAA +H LV+ K+H+ + K L +H +V+ + ++A
Sbjct: 41 EPKTELFHCENEDLVCFKDIKPAALYHYLVVPKKHIGSCKDLNKDHIEMVESM--VAAGK 98
Query: 69 YLCLMVIFH-----RYGFHWPPFYSIGHLHLHVIAPVSEMSFLSKIIFKPNTWWFV 119
+ F R GFH PPF SI HLHLHVIAPV E FLSK++++ +++WFV
Sbjct: 99 TMLERNNFTDFTDVRMGFHVPPFCSISHLHLHVIAPVKEFGFLSKLVYRQDSYWFV 154
>sp|Q8K3P7|HINT3_RAT Histidine triad nucleotide-binding protein 3 OS=Rattus norvegicus
GN=Hint3 PE=2 SV=2
Length = 175
Score = 91.3 bits (225), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 47/114 (41%), Positives = 69/114 (60%), Gaps = 4/114 (3%)
Query: 10 KPNTWWFVTDN-DVVAFPDIKPAAKHHTLVISKQHVLNAKVLTSEHKALVQWLEDLS-AI 67
+P T +N D+V F DIKPAA HH LV+ K+H+ + K L +H +V+ + + I
Sbjct: 51 EPETELLYCENKDLVCFKDIKPAALHHYLVVPKKHIGSCKDLNKDHIEMVESMVTVGKTI 110
Query: 68 TYLCLMVIFH--RYGFHWPPFYSIGHLHLHVIAPVSEMSFLSKIIFKPNTWWFV 119
F R GFH PPF S+ HLHLHVIAP E FLS+++++ +++WF+
Sbjct: 111 LERNNFTDFTDVRMGFHVPPFCSVSHLHLHVIAPAKEFGFLSRVVYRRDSYWFI 164
>sp|Q2YDJ4|HINT3_BOVIN Histidine triad nucleotide-binding protein 3 OS=Bos taurus GN=HINT3
PE=2 SV=1
Length = 182
Score = 90.1 bits (222), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 50/129 (38%), Positives = 74/129 (57%), Gaps = 11/129 (8%)
Query: 2 SFLSKIIF-------KPNTWWFVTDN-DVVAFPDIKPAAKHHTLVISKQHVLNAKVLTSE 53
++ SK +F P T +N D+V F DIKPAA HH LV+ K+H N K L +
Sbjct: 43 NYSSKCVFCRIAAHQDPGTELLHCENEDLVCFKDIKPAAPHHYLVVPKKHFENCKYLKKD 102
Query: 54 HKALVQWLEDLS-AITYLCLMVIFH--RYGFHWPPFYSIGHLHLHVIAPVSEMSFLSKII 110
L++ + + AI F R GFH PF SI HLHLHV+AP ++SF+S+++
Sbjct: 103 QIELIENMVTVGKAILERNNFTDFENTRMGFHVSPFCSIAHLHLHVLAPADQLSFMSRLV 162
Query: 111 FKPNTWWFV 119
++ N++WF+
Sbjct: 163 YRVNSYWFI 171
>sp|Q5PNN8|HINT3_DANRE Histidine triad nucleotide-binding protein 3 OS=Danio rerio
GN=hint3 PE=2 SV=1
Length = 160
Score = 62.4 bits (150), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 34/94 (36%), Positives = 51/94 (54%), Gaps = 3/94 (3%)
Query: 13 TWWFVTDNDVVAFPDIKPAAKHHTLVISKQHVLNAKVLTSEHKALVQWLEDLSAITYLCL 72
T D D V F DI P A HH LVI K+H+ + L ++ +LV+ + ++
Sbjct: 36 TEILAEDEDFVCFRDINPGAPHHYLVIPKKHIYSCLSLYADDISLVRGMAEMGRNVLKAN 95
Query: 73 MVIFHR---YGFHWPPFYSIGHLHLHVIAPVSEM 103
V + GFH PP+ ++ HLHLHV+AP S++
Sbjct: 96 NVTDLKDISLGFHVPPYITVPHLHLHVLAPYSQL 129
>sp|Q7T287|APTX_XENLA Aprataxin OS=Xenopus laevis GN=aptx PE=2 SV=1
Length = 347
Score = 44.3 bits (103), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 31/96 (32%), Positives = 50/96 (52%), Gaps = 5/96 (5%)
Query: 6 KIIFKPNTWWFVTDNDVVAFPDIKPAAKHHTLVISKQHVLNAKVLTSEHKALVQWLEDLS 65
K+ + T D+ +V D P A++H LV+ Q + + KVL +EH LVQ ++ +
Sbjct: 177 KVSMQDPTMQVFKDDKIVVIKDKYPKARYHWLVLPWQSIASLKVLRAEHLELVQHMDAVG 236
Query: 66 ---AITYLCLMVIFHRYGFHWPPFYSIGHLHLHVIA 98
A + R+G+H P S+ H+HLHVI+
Sbjct: 237 HNIAREHTNSKCAPFRFGYHAIP--SMSHVHLHVIS 270
>sp|Q8K4H4|APTX_RAT Aprataxin OS=Rattus norvegicus GN=Aptx PE=2 SV=1
Length = 329
Score = 40.4 bits (93), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 31/96 (32%), Positives = 47/96 (48%), Gaps = 5/96 (5%)
Query: 6 KIIFKPNTWWFVTDNDVVAFPDIKPAAKHHTLVISKQHVLNAKVLTSEHKALVQWLEDLS 65
KI K D+ VV D P A+HH LV+ + + KV+TSEH L++ + +
Sbjct: 159 KISMKDPKMQVYKDDQVVVIKDKYPKARHHWLVLPWASISSLKVVTSEHLELLKHMHAVG 218
Query: 66 A---ITYLCLMVIFHRYGFHWPPFYSIGHLHLHVIA 98
+ + R G+H P S+ H+HLHVI+
Sbjct: 219 EKVIADFTGSSKLRFRLGYHAIP--SMSHVHLHVIS 252
>sp|P61801|APTX_XENTR Aprataxin OS=Xenopus tropicalis GN=aptx PE=2 SV=1
Length = 347
Score = 40.0 bits (92), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 31/89 (34%), Positives = 45/89 (50%), Gaps = 5/89 (5%)
Query: 13 TWWFVTDNDVVAFPDIKPAAKHHTLVISKQHVLNAKVLTSEHKALVQWLEDLS---AITY 69
T D+ VV D P A++H LV+ Q + N KVL +EH LVQ + + A +
Sbjct: 184 TMQVFKDDKVVVIKDKYPKARYHWLVLPWQSIANLKVLRAEHLELVQHMHAVGQKIAKEH 243
Query: 70 LCLMVIFHRYGFHWPPFYSIGHLHLHVIA 98
+ G+H P S+ H+HLHVI+
Sbjct: 244 SDSKCAPFQLGYHAIP--SMSHVHLHVIS 270
>sp|Q7TQC5|APTX_MOUSE Aprataxin OS=Mus musculus GN=Aptx PE=2 SV=2
Length = 342
Score = 39.3 bits (90), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 30/96 (31%), Positives = 47/96 (48%), Gaps = 5/96 (5%)
Query: 6 KIIFKPNTWWFVTDNDVVAFPDIKPAAKHHTLVISKQHVLNAKVLTSEHKALVQWLEDLS 65
K+ K D+ VV D P A+HH LV+ + + KV+TSEH L++ + +
Sbjct: 172 KMSMKDPKMQVYKDDQVVVIKDKYPKARHHWLVLPWASISSLKVVTSEHLELLKHMHAVG 231
Query: 66 A---ITYLCLMVIFHRYGFHWPPFYSIGHLHLHVIA 98
+ + R G+H P S+ H+HLHVI+
Sbjct: 232 EKVIADFAGSSKLRFRLGYHAIP--SMSHVHLHVIS 265
>sp|P61800|APTX_TAKRU Aprataxin OS=Takifugu rubripes GN=aptx PE=2 SV=1
Length = 356
Score = 38.5 bits (88), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 28/83 (33%), Positives = 45/83 (54%), Gaps = 5/83 (6%)
Query: 19 DNDVVAFPDIKPAAKHHTLVISKQHVLNAKVLTSEHKALVQWLEDLSA-ITYLCLMVIFH 77
D+ VV D P A++H LV+ Q + + K L EH LV+ ++ ++ + C
Sbjct: 199 DDKVVVIKDKYPKARYHWLVLPWQSISSLKALRKEHCDLVKHMQQVAEQMIRQCPDASTP 258
Query: 78 RY--GFHWPPFYSIGHLHLHVIA 98
R+ G+H P S+ H+HLHVI+
Sbjct: 259 RFRSGYHAIP--SMSHVHLHVIS 279
>sp|P32084|Y1390_SYNE7 Uncharacterized HIT-like protein Synpcc7942_1390 OS=Synechococcus
elongatus (strain PCC 7942) GN=Synpcc7942_1390 PE=4 SV=1
Length = 114
Score = 38.5 bits (88), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 32/104 (30%), Positives = 52/104 (50%), Gaps = 4/104 (3%)
Query: 2 SFLSKIIFKPNTWWFVTDNDV-VAFPDIKPAAKHHTLVISKQHVLNAKVLTSEHKALVQ- 59
+ KII + V ++D+ +AF D+ P A H LVI KQ + N T+EH+AL+
Sbjct: 5 TIFGKIIRREIPADIVYEDDLCLAFRDVAPQAPVHILVIPKQPIANLLEATAEHQALLGH 64
Query: 60 WLEDLSAITYLCLMVIFHRYGFHWPP--FYSIGHLHLHVIAPVS 101
L + AI + +R + P ++ HLH+H++ S
Sbjct: 65 LLLTVKAIAAQEGLTEGYRTVINTGPAGGQTVYHLHIHLLGGRS 108
>sp|O66536|YHIT_AQUAE Uncharacterized HIT-like protein aq_141 OS=Aquifex aeolicus (strain
VF5) GN=aq_141 PE=4 SV=1
Length = 121
Score = 38.5 bits (88), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 31/96 (32%), Positives = 44/96 (45%), Gaps = 10/96 (10%)
Query: 18 TDNDVVAFPDIKPAAKHHTLVISKQHVLNAKVLTSEHKALVQWL--------EDLSAITY 69
D+ V+AF DI P A H L+I K+H++ + L E + LV + EDL
Sbjct: 23 EDDKVLAFHDINPVAPVHILIIPKKHIMGIQTLEPEDECLVGHMFYVARKIAEDLGIAPD 82
Query: 70 LCLMVIFHR-YGFHWPPFYSIGHLHLHVIAPVSEMS 104
L + + S+ HLHLH+I EMS
Sbjct: 83 ENLNKGYRLVFNVGKDAGQSVFHLHLHLIGG-REMS 117
>sp|P61799|APTX_DANRE Aprataxin OS=Danio rerio GN=aptx PE=2 SV=1
Length = 324
Score = 37.7 bits (86), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 28/83 (33%), Positives = 46/83 (55%), Gaps = 5/83 (6%)
Query: 19 DNDVVAFPDIKPAAKHHTLVISKQHVLNAKVLTSEHKALVQWLEDLS-AITYLCLMV--I 75
D+ VV D P A++H LV+ Q + + K L SEH L++ ++ ++ + C +
Sbjct: 167 DDSVVVIKDKYPKARYHWLVLPWQSISSLKALRSEHVELLKHMQRVADQMVEQCPDAHKL 226
Query: 76 FHRYGFHWPPFYSIGHLHLHVIA 98
R G+H P S+ H+HLHVI+
Sbjct: 227 SFRLGYHAIP--SMSHVHLHVIS 247
>sp|P0A5B5|YHI1_MYCTU Uncharacterized HIT-like protein Rv0759c/MT0784 OS=Mycobacterium
tuberculosis GN=Rv0759c PE=4 SV=1
Length = 133
Score = 35.4 bits (80), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 19/45 (42%), Positives = 27/45 (60%), Gaps = 1/45 (2%)
Query: 1 MSFLSKIIFKPNTWWFV-TDNDVVAFPDIKPAAKHHTLVISKQHV 44
MS +KII + FV D+DVVAF I+P + HTLV+ + +
Sbjct: 1 MSIFTKIINRELPGRFVYEDDDVVAFLTIEPMTQGHTLVVPRAEI 45
>sp|P0A5B6|YHI1_MYCBO Uncharacterized HIT-like protein Mb0782c OS=Mycobacterium bovis
(strain ATCC BAA-935 / AF2122/97) GN=Mb0782c PE=4 SV=1
Length = 133
Score = 35.4 bits (80), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 19/45 (42%), Positives = 27/45 (60%), Gaps = 1/45 (2%)
Query: 1 MSFLSKIIFKPNTWWFV-TDNDVVAFPDIKPAAKHHTLVISKQHV 44
MS +KII + FV D+DVVAF I+P + HTLV+ + +
Sbjct: 1 MSIFTKIINRELPGRFVYEDDDVVAFLTIEPMTQGHTLVVPRAEI 45
>sp|P62959|HINT1_RAT Histidine triad nucleotide-binding protein 1 OS=Rattus norvegicus
GN=Hint1 PE=1 SV=5
Length = 126
Score = 35.0 bits (79), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 29/100 (29%), Positives = 45/100 (45%), Gaps = 17/100 (17%)
Query: 5 SKIIFKPNTWWFVTDNDVVAFPDIKPAAKHHTLVISKQHVLNAKVLTSEHKALVQWLEDL 64
+KIIF+ D+ +AF DI P A H LVI K+H+ V + ++L L L
Sbjct: 29 AKIIFE--------DDRCLAFHDISPQAPTHFLVIPKKHISQISVADDDDESL---LGHL 77
Query: 65 SAITYLCLMVIFHRYGFHW------PPFYSIGHLHLHVIA 98
+ C + + G+ S+ H+HLHV+
Sbjct: 78 MIVGKKCAADLGLKRGYRMVVNEGADGGQSVYHIHLHVLG 117
>sp|P70349|HINT1_MOUSE Histidine triad nucleotide-binding protein 1 OS=Mus musculus
GN=Hint1 PE=1 SV=3
Length = 126
Score = 35.0 bits (79), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 29/100 (29%), Positives = 45/100 (45%), Gaps = 17/100 (17%)
Query: 5 SKIIFKPNTWWFVTDNDVVAFPDIKPAAKHHTLVISKQHVLNAKVLTSEHKALVQWLEDL 64
+KIIF+ D+ +AF DI P A H LVI K+H+ V + ++L L L
Sbjct: 29 AKIIFE--------DDRCLAFHDISPQAPTHFLVIPKKHISQISVADDDDESL---LGHL 77
Query: 65 SAITYLCLMVIFHRYGFHW------PPFYSIGHLHLHVIA 98
+ C + + G+ S+ H+HLHV+
Sbjct: 78 MIVGKKCAADLGLKRGYRMVVNEGADGGQSVYHIHLHVLG 117
>sp|Q9BGQ0|APTX_MACFA Aprataxin OS=Macaca fascicularis GN=APTX PE=2 SV=1
Length = 356
Score = 34.3 bits (77), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 27/96 (28%), Positives = 45/96 (46%), Gaps = 5/96 (5%)
Query: 6 KIIFKPNTWWFVTDNDVVAFPDIKPAAKHHTLVISKQHVLNAKVLTSEHKALVQWLEDLS 65
KI + D VV D P A++H LV+ + + K +T EH L++ + +
Sbjct: 186 KISMQDPKMQVYKDEQVVVIKDKYPKARYHWLVLPWTAISSLKAVTREHLELLKHMHTVG 245
Query: 66 A---ITYLCLMVIFHRYGFHWPPFYSIGHLHLHVIA 98
+ + + R G+H P S+ H+HLHVI+
Sbjct: 246 EKVIVDFAGSSKLRFRLGYHAIP--SMSHVHLHVIS 279
>sp|Q5RF69|HINT1_PONAB Histidine triad nucleotide-binding protein 1 OS=Pongo abelii
GN=HINT1 PE=2 SV=3
Length = 126
Score = 34.3 bits (77), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 29/100 (29%), Positives = 45/100 (45%), Gaps = 17/100 (17%)
Query: 5 SKIIFKPNTWWFVTDNDVVAFPDIKPAAKHHTLVISKQHVLNAKVLTSEHKALVQWLEDL 64
+KIIF+ D+ +AF DI P A H LVI K+H+ V ++++L L L
Sbjct: 29 AKIIFE--------DDRCLAFHDISPQAPTHFLVIPKKHISQISVAEDDNESL---LGHL 77
Query: 65 SAITYLCLMVIFHRYGFHW------PPFYSIGHLHLHVIA 98
+ C + G+ S+ H+HLHV+
Sbjct: 78 MIVGKKCAADLGLNKGYRMVVNEGSDGGQSVYHVHLHVLG 117
>sp|P61797|APTX_CANFA Aprataxin OS=Canis familiaris GN=APTX PE=2 SV=1
Length = 342
Score = 34.3 bits (77), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 28/96 (29%), Positives = 44/96 (45%), Gaps = 5/96 (5%)
Query: 6 KIIFKPNTWWFVTDNDVVAFPDIKPAAKHHTLVISKQHVLNAKVLTSEHKALVQWLEDLS 65
KI + D VV D P A++H LV+ V + K +T EH L++ + +
Sbjct: 172 KISMQDPKMQVYKDEQVVVIKDKYPKARYHWLVLPWASVSSLKAVTGEHLELLKHMHTVG 231
Query: 66 A---ITYLCLMVIFHRYGFHWPPFYSIGHLHLHVIA 98
+ + R G+H P S+ H+HLHVI+
Sbjct: 232 EKMIADFAGSSKLRFRLGYHAIP--SMSHVHLHVIS 265
>sp|Q7YRZ1|APTX_PIG Aprataxin OS=Sus scrofa GN=APTX PE=2 SV=1
Length = 356
Score = 33.9 bits (76), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 27/96 (28%), Positives = 45/96 (46%), Gaps = 5/96 (5%)
Query: 6 KIIFKPNTWWFVTDNDVVAFPDIKPAAKHHTLVISKQHVLNAKVLTSEHKALVQWLEDLS 65
KI + D+ VV D P A++H LV+ + + K +T EH L++ + +
Sbjct: 186 KISMEDPKMQVYKDDQVVVIKDKYPKARYHWLVLPWASISSLKAVTREHLELLRHMHTVG 245
Query: 66 A---ITYLCLMVIFHRYGFHWPPFYSIGHLHLHVIA 98
+ + R G+H P S+ H+HLHVI+
Sbjct: 246 EKVIADFAGSSKLRFRLGYHAIP--SMSHVHLHVIS 279
>sp|P49773|HINT1_HUMAN Histidine triad nucleotide-binding protein 1 OS=Homo sapiens
GN=HINT1 PE=1 SV=2
Length = 126
Score = 33.5 bits (75), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 29/100 (29%), Positives = 44/100 (44%), Gaps = 17/100 (17%)
Query: 5 SKIIFKPNTWWFVTDNDVVAFPDIKPAAKHHTLVISKQHVLNAKVLTSEHKALVQWLEDL 64
+KIIF+ D+ +AF DI P A H LVI K+H+ V + ++L L L
Sbjct: 29 AKIIFE--------DDRCLAFHDISPQAPTHFLVIPKKHISQISVAEDDDESL---LGHL 77
Query: 65 SAITYLCLMVIFHRYGFHW------PPFYSIGHLHLHVIA 98
+ C + G+ S+ H+HLHV+
Sbjct: 78 MIVGKKCAADLGLNKGYRMVVNEGSDGGQSVYHVHLHVLG 117
>sp|Q7Z2E3|APTX_HUMAN Aprataxin OS=Homo sapiens GN=APTX PE=1 SV=2
Length = 356
Score = 33.1 bits (74), Expect = 0.55, Method: Compositional matrix adjust.
Identities = 26/96 (27%), Positives = 44/96 (45%), Gaps = 5/96 (5%)
Query: 6 KIIFKPNTWWFVTDNDVVAFPDIKPAAKHHTLVISKQHVLNAKVLTSEHKALVQWLEDLS 65
KI + D VV D P A++H LV+ + + K + EH L++ + +
Sbjct: 186 KISMQDPKMQVYKDEQVVVIKDKYPKARYHWLVLPWTSISSLKAVAREHLELLKHMHTVG 245
Query: 66 A---ITYLCLMVIFHRYGFHWPPFYSIGHLHLHVIA 98
+ + + R G+H P S+ H+HLHVI+
Sbjct: 246 EKVIVDFAGSSKLRFRLGYHAIP--SMSHVHLHVIS 279
>sp|P80912|HINT1_RABIT Histidine triad nucleotide-binding protein 1 OS=Oryctolagus
cuniculus GN=HINT1 PE=1 SV=2
Length = 126
Score = 33.1 bits (74), Expect = 0.57, Method: Compositional matrix adjust.
Identities = 28/100 (28%), Positives = 44/100 (44%), Gaps = 17/100 (17%)
Query: 5 SKIIFKPNTWWFVTDNDVVAFPDIKPAAKHHTLVISKQHVLNAKVLTSEHKALVQWLEDL 64
+KIIF+ D+ +AF DI P A H LVI K+H+ +++ A L L
Sbjct: 29 AKIIFE--------DDQCLAFHDISPQAPTHFLVIPKKHISQ---ISAAEDADESLLGHL 77
Query: 65 SAITYLCLMVIFHRYGFHW------PPFYSIGHLHLHVIA 98
+ C + + G+ S+ H+HLHV+
Sbjct: 78 MIVGKKCAADLGLKKGYRMVVNEGSDGGQSVYHVHLHVLG 117
>sp|B6IP82|DAPF_RHOCS Diaminopimelate epimerase OS=Rhodospirillum centenum (strain ATCC
51521 / SW) GN=dapF PE=1 SV=1
Length = 291
Score = 32.7 bits (73), Expect = 0.66, Method: Compositional matrix adjust.
Identities = 18/64 (28%), Positives = 32/64 (50%), Gaps = 1/64 (1%)
Query: 8 IFKPNTWWFVTDNDVVAFPDIKPAAKHHTLVISKQHVLNAKVLTSEHKALVQWLEDLSAI 67
+ P+ +FV D + V + P +HH+L + ++ A+VL +H + W E + I
Sbjct: 154 MGNPHAVFFVDDAEAVDLATLGPVLEHHSLFPQRCNIEVAQVLAPDHIRMRVW-ERGAGI 212
Query: 68 TYLC 71
T C
Sbjct: 213 TRAC 216
>sp|O74859|APTX_SCHPO Aprataxin-like protein OS=Schizosaccharomyces pombe (strain 972 /
ATCC 24843) GN=hnt3 PE=1 SV=1
Length = 232
Score = 32.3 bits (72), Expect = 0.84, Method: Compositional matrix adjust.
Identities = 29/101 (28%), Positives = 52/101 (51%), Gaps = 24/101 (23%)
Query: 19 DNDVVAFPDIKPAAKHHTLVISKQ----HVLNAKVLTSEHKALVQWL-----EDLSAITY 69
D+DVV D+ P +K H L++++ HV +++ +H++LV+ L DLS + +
Sbjct: 55 DDDVVLVRDMFPKSKMHLLLMTRDPHLTHVHPLEIMM-KHRSLVEKLVSYVQGDLSGLIF 113
Query: 70 L----CL--------MVIFHRYGFHWPPFYSIGHLHLHVIA 98
CL + + + GFH P S+ +LHLH++
Sbjct: 114 DEARNCLSQQLTNEALCNYIKVGFHAGP--SMNNLHLHIMT 152
>sp|O07513|HIT_BACSU Protein hit OS=Bacillus subtilis (strain 168) GN=hit PE=1 SV=1
Length = 145
Score = 31.6 bits (70), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 17/35 (48%), Positives = 19/35 (54%)
Query: 19 DNDVVAFPDIKPAAKHHTLVISKQHVLNAKVLTSE 53
D V+AF DI K HTLVI K H+ N T E
Sbjct: 25 DEHVLAFLDISQVTKGHTLVIPKTHIENVYEFTDE 59
>sp|Q7YRZ2|APTX_BOVIN Aprataxin OS=Bos taurus GN=APTX PE=2 SV=1
Length = 356
Score = 31.6 bits (70), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 29/96 (30%), Positives = 43/96 (44%), Gaps = 5/96 (5%)
Query: 6 KIIFKPNTWWFVTDNDVVAFPDIKPAAKHHTLVISKQHVLNAKVLTSEHKALVQWLEDLS 65
KI + D VV D P A+ H LV+ + + K +T EH L++ + +
Sbjct: 186 KISMEDPKMQVYKDEQVVVIKDKYPKARFHWLVLPWASISSLKAVTREHLELLRHMHAVG 245
Query: 66 A--ITYLCLMVIFH-RYGFHWPPFYSIGHLHLHVIA 98
I F R G+H P S+ H+HLHVI+
Sbjct: 246 EKVIADFAGSSKFRFRLGYHAIP--SMSHVHLHVIS 279
>sp|P73481|YHIT_SYNY3 Uncharacterized HIT-like protein slr1234 OS=Synechocystis sp.
(strain PCC 6803 / Kazusa) GN=slr1234 PE=4 SV=1
Length = 114
Score = 31.2 bits (69), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 29/102 (28%), Positives = 46/102 (45%), Gaps = 6/102 (5%)
Query: 2 SFLSKIIFKPNTWWFVTDNDV-VAFPDIKPAAKHHTLVISKQHVLNAKVLTSEHKALVQW 60
+ SKII + V ++D+ +AF D+ P A H L+I K+ + T E AL+
Sbjct: 5 TIFSKIIRREIPAAIVYEDDLCLAFKDVNPQAPVHVLLIPKKPLPQLSAATPEDHALLGH 64
Query: 61 LEDLSAITYLCLMVIFHRYGFHWPPFYSIG----HLHLHVIA 98
L L A + I ++ +G HLHLH++
Sbjct: 65 LL-LKAKEVAADLGIGDQFRLVINNGAEVGQTVFHLHLHILG 105
>sp|Q9QJ38|V120_HHV6Z Protein U30 OS=Human herpesvirus 6B (strain Z29) GN=U30 PE=3 SV=1
Length = 1082
Score = 30.8 bits (68), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 24/56 (42%), Positives = 32/56 (57%), Gaps = 5/56 (8%)
Query: 17 VTDNDVVAFPDIKPAAKHHTLVISKQHV---LNAKVLTSEHKALVQWL--EDLSAI 67
VT N V+AF + P K+H +I + V LN+ LTSE+K L L E+LS I
Sbjct: 188 VTHNRVIAFINRLPPKKYHFDLIREYTVFYFLNSTTLTSENKLLSAELLHEELSQI 243
>sp|P62958|HINT1_BOVIN Histidine triad nucleotide-binding protein 1 OS=Bos taurus GN=HINT1
PE=1 SV=2
Length = 126
Score = 30.8 bits (68), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 27/104 (25%), Positives = 44/104 (42%), Gaps = 10/104 (9%)
Query: 2 SFLSKIIFKPNTWWFV-TDNDVVAFPDIKPAAKHHTLVISKQHVLNAKVLTSEHKALVQW 60
+ KII K + D+ +AF DI P A H LVI K+++ + ++L
Sbjct: 17 TIFGKIIRKEIPAKIIYEDDQCLAFHDISPQAPTHFLVIPKKYISQISAAEDDDESL--- 73
Query: 61 LEDLSAITYLCLMVIFHRYGFHW------PPFYSIGHLHLHVIA 98
L L + C + + G+ S+ H+HLHV+
Sbjct: 74 LGHLMIVGKKCAADLGLKKGYRMVVNEGSDGGQSVYHVHLHVLG 117
>sp|P93149|C93B1_GLYEC Licodione synthase OS=Glycyrrhiza echinata GN=CYP93B1 PE=1 SV=2
Length = 523
Score = 30.8 bits (68), Expect = 2.9, Method: Composition-based stats.
Identities = 15/42 (35%), Positives = 23/42 (54%), Gaps = 3/42 (7%)
Query: 67 ITYLCLMVIFHRYGFHWP--PFYSIGHL-HLHVIAPVSEMSF 105
I Y FHRYG + P PF+ + + H+H++ P+ SF
Sbjct: 16 ICYFFFRPYFHRYGKNLPPSPFFRLPIIGHMHMLGPLLHQSF 57
>sp|P94252|YHIT_BORBU Uncharacterized HIT-like protein BB_0379 OS=Borrelia burgdorferi
(strain ATCC 35210 / B31 / CIP 102532 / DSM 4680)
GN=BB_0379 PE=4 SV=1
Length = 139
Score = 30.8 bits (68), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 19/39 (48%), Positives = 24/39 (61%), Gaps = 1/39 (2%)
Query: 6 KIIFKPNTWWFVTDNDVV-AFPDIKPAAKHHTLVISKQH 43
KII K + V ++D+V AF DI P HTLVI K+H
Sbjct: 8 KIINKELPSYKVYEDDLVLAFLDINPLTVGHTLVIPKEH 46
>sp|Q58276|Y866_METJA Uncharacterized HIT-like protein MJ0866 OS=Methanocaldococcus
jannaschii (strain ATCC 43067 / DSM 2661 / JAL-1 / JCM
10045 / NBRC 100440) GN=MJ0866 PE=4 SV=2
Length = 129
Score = 30.4 bits (67), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 14/26 (53%), Positives = 17/26 (65%)
Query: 18 TDNDVVAFPDIKPAAKHHTLVISKQH 43
D V+AF DI P K HTLV+ K+H
Sbjct: 19 EDEHVLAFLDINPRNKGHTLVVPKKH 44
>sp|P61798|APTX_CHICK Aprataxin (Fragment) OS=Gallus gallus GN=APTX PE=2 SV=1
Length = 316
Score = 30.4 bits (67), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 27/86 (31%), Positives = 40/86 (46%), Gaps = 11/86 (12%)
Query: 19 DNDVVAFPDIKPAAKHHTLVISKQHVLNAKVLTSEHKALVQWLEDLSAITYLCLM----- 73
D V D P A++H LV+ + + K +T EH L LE + A+ +
Sbjct: 159 DEKTVVIKDKYPKARYHWLVLPWDSISSLKSVTREHLGL---LEHMHAVGQKMIQQCPAK 215
Query: 74 -VIFHRYGFHWPPFYSIGHLHLHVIA 98
+ R G+H P S+ LHLHVI+
Sbjct: 216 ESLEFRLGYHAIP--SMSQLHLHVIS 239
>sp|Q558W0|Y2839_DICDI HIT domain-containing protein DDB_G0272839 OS=Dictyostelium
discoideum GN=DDB_G0272839 PE=2 SV=1
Length = 390
Score = 30.0 bits (66), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 30/105 (28%), Positives = 44/105 (41%), Gaps = 21/105 (20%)
Query: 10 KPNTWWFVT---DNDVVAFPDIKPAAKHHTLVISKQHVLNAKVLTSEHKALVQWLEDLSA 66
KP ++ V D+ VA D P AKHH LVI + + LT + + LE +
Sbjct: 236 KPESFLDVVLYYDDKTVAVLDKYPKAKHHYLVIPRVEINTLDELTP---SFIPMLEHMYN 292
Query: 67 ITYLCLMVIFH-------------RYGFHWPPFYSIGHLHLHVIA 98
+ + I + GFH P S+ LHLH+I+
Sbjct: 293 VADAIINEIISKDNDDDNLKKSDFKLGFHAIP--SMKRLHLHIIS 335
>sp|Q6FV04|RU2A_CANGA U2 small nuclear ribonucleoprotein A' OS=Candida glabrata (strain
ATCC 2001 / CBS 138 / JCM 3761 / NBRC 0622 / NRRL Y-65)
GN=LEA1 PE=3 SV=1
Length = 266
Score = 30.0 bits (66), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 20/52 (38%), Positives = 31/52 (59%), Gaps = 2/52 (3%)
Query: 8 IFKPNTWWFVTDNDVVAFPDIKPAAKHHTLVISKQH--VLNAKVLTSEHKAL 57
+ KP +T+ND+V FPD+ TL++SK VL+A +L S+ K+L
Sbjct: 50 LAKPTHILDLTNNDLVFFPDLHHRDDIETLLLSKNRLMVLDAALLPSKLKSL 101
>sp|O07817|HITA_NEIGO Protein HitA OS=Neisseria gonorrhoeae GN=hitA PE=4 SV=1
Length = 107
Score = 29.6 bits (65), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 16/43 (37%), Positives = 23/43 (53%)
Query: 19 DNDVVAFPDIKPAAKHHTLVISKQHVLNAKVLTSEHKALVQWL 61
D ++V F DI PAA H L+I K H + EH+ L+ +
Sbjct: 22 DGEMVCFKDINPAAPLHLLLIPKVHFDSLAHAAPEHQPLLGKM 64
>sp|O94586|HNT1_SCHPO Hit family protein 1 OS=Schizosaccharomyces pombe (strain 972 /
ATCC 24843) GN=hnt1 PE=3 SV=1
Length = 133
Score = 29.3 bits (64), Expect = 8.2, Method: Compositional matrix adjust.
Identities = 15/34 (44%), Positives = 19/34 (55%)
Query: 23 VAFPDIKPAAKHHTLVISKQHVLNAKVLTSEHKA 56
+AF DI P +K H LVI K+H L+ E A
Sbjct: 25 LAFLDIAPTSKGHALVIPKEHAAKMHELSDESCA 58
>sp|Q20701|GPA5_CAEEL Guanine nucleotide-binding protein alpha-5 subunit
OS=Caenorhabditis elegans GN=gpa-5 PE=2 SV=1
Length = 385
Score = 28.9 bits (63), Expect = 8.7, Method: Composition-based stats.
Identities = 19/74 (25%), Positives = 37/74 (50%), Gaps = 7/74 (9%)
Query: 16 FVTDNDVV-AFPDIKPAAKHHTLVISKQHVLNAKVLTSEHKA--LVQWLEDLSAIT---- 68
FV N+++ AF +I H + ++++ + K+ E L+Q +++L+ I
Sbjct: 71 FVIRNNIIDAFKNICNIILHSDITVTQEEKVLVKLFAYESGKIELMQEVDELNVINAVSG 130
Query: 69 YLCLMVIFHRYGFH 82
Y C+ F R+ FH
Sbjct: 131 YECIKQFFERFAFH 144
>sp|B2IEM1|DAPF_BEII9 Diaminopimelate epimerase OS=Beijerinckia indica subsp. indica
(strain ATCC 9039 / DSM 1715 / NCIB 8712) GN=dapF PE=1
SV=1
Length = 297
Score = 28.9 bits (63), Expect = 9.7, Method: Compositional matrix adjust.
Identities = 17/64 (26%), Positives = 28/64 (43%), Gaps = 1/64 (1%)
Query: 8 IFKPNTWWFVTDNDVVAFPDIKPAAKHHTLVISKQHVLNAKVLTSEHKALVQWLEDLSAI 67
+ P+ FV D D + P +HH L + ++ A V++ +H L W E +
Sbjct: 170 MGNPHAVLFVADQDACDLALVGPVLEHHPLFPDRANISIATVVSPDHIVLKVW-ERGAGA 228
Query: 68 TYLC 71
T C
Sbjct: 229 TLAC 232
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.329 0.139 0.479
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 45,086,125
Number of Sequences: 539616
Number of extensions: 1570346
Number of successful extensions: 4190
Number of sequences better than 100.0: 47
Number of HSP's better than 100.0 without gapping: 36
Number of HSP's successfully gapped in prelim test: 11
Number of HSP's that attempted gapping in prelim test: 4126
Number of HSP's gapped (non-prelim): 55
length of query: 119
length of database: 191,569,459
effective HSP length: 86
effective length of query: 33
effective length of database: 145,162,483
effective search space: 4790361939
effective search space used: 4790361939
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.8 bits)
S2: 55 (25.8 bits)