Query psy14209
Match_columns 119
No_of_seqs 149 out of 1078
Neff 8.3
Searched_HMMs 46136
Date Fri Aug 16 22:14:08 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy14209.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/14209hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PRK10687 purine nucleoside pho 100.0 2.8E-35 6.1E-40 192.8 11.3 101 1-101 4-109 (119)
2 cd01276 PKCI_related Protein K 100.0 1E-33 2.3E-38 180.9 11.7 99 1-99 1-104 (104)
3 COG0537 Hit Diadenosine tetrap 100.0 5.9E-33 1.3E-37 186.1 12.7 101 1-101 2-106 (138)
4 cd01277 HINT_subgroup HINT (hi 100.0 4.7E-32 1E-36 172.7 12.5 99 1-99 1-103 (103)
5 KOG3275|consensus 100.0 7.1E-32 1.5E-36 172.2 10.4 105 1-106 17-125 (127)
6 cd01275 FHIT FHIT (fragile his 100.0 2.6E-31 5.7E-36 175.4 13.3 101 2-102 1-106 (126)
7 cd01278 aprataxin_related apra 100.0 2.7E-31 5.9E-36 169.8 12.2 98 1-98 1-104 (104)
8 PF01230 HIT: HIT domain; Int 100.0 2.8E-28 6.1E-33 154.4 10.1 92 10-101 3-97 (98)
9 KOG4359|consensus 99.9 2.4E-27 5.2E-32 155.8 9.2 118 1-119 32-155 (166)
10 PF11969 DcpS_C: Scavenger mRN 99.9 3.8E-27 8.3E-32 153.7 8.8 105 1-107 1-112 (116)
11 PRK11720 galactose-1-phosphate 99.9 2.1E-26 4.6E-31 174.1 10.6 99 1-99 195-302 (346)
12 TIGR00209 galT_1 galactose-1-p 99.9 4.7E-26 1E-30 172.3 10.7 99 1-99 195-302 (347)
13 cd00608 GalT Galactose-1-phosp 99.9 1.2E-25 2.6E-30 169.2 11.0 101 1-101 185-296 (329)
14 cd00468 HIT_like HIT family: H 99.9 3.9E-25 8.5E-30 136.3 9.8 83 16-98 1-86 (86)
15 PLN02643 ADP-glucose phosphory 99.9 3.6E-24 7.8E-29 161.5 11.3 99 1-102 199-305 (336)
16 KOG3379|consensus 99.9 2.8E-23 6E-28 136.2 9.5 102 12-113 16-120 (150)
17 PF02744 GalP_UDP_tr_C: Galact 99.7 6.4E-18 1.4E-22 116.4 8.7 99 1-99 14-120 (166)
18 COG1085 GalT Galactose-1-phosp 99.7 1.4E-16 3.1E-21 119.3 9.3 99 1-99 186-292 (338)
19 KOG2958|consensus 99.6 5.8E-15 1.3E-19 108.1 5.6 98 2-99 201-309 (354)
20 PF04677 CwfJ_C_1: Protein sim 99.2 3.8E-10 8.2E-15 74.1 12.1 92 1-98 12-107 (121)
21 KOG0562|consensus 99.2 3.4E-11 7.3E-16 81.8 5.6 88 10-99 12-105 (184)
22 KOG2476|consensus 98.8 5.5E-08 1.2E-12 75.6 10.6 94 1-98 320-415 (528)
23 KOG3969|consensus 98.6 7.9E-07 1.7E-11 65.2 9.3 87 11-99 158-256 (310)
24 PLN03103 GDP-L-galactose-hexos 98.5 5.7E-07 1.2E-11 69.4 7.6 73 19-98 168-241 (403)
25 KOG2720|consensus 98.0 6.6E-06 1.4E-10 62.2 4.1 69 23-98 169-238 (431)
26 KOG2477|consensus 97.7 0.0007 1.5E-08 53.8 10.3 96 1-98 408-506 (628)
27 TIGR00672 cdh CDP-diacylglycer 97.4 0.00069 1.5E-08 49.5 7.1 81 13-96 54-142 (250)
28 PRK05471 CDP-diacylglycerol py 97.4 0.00095 2.1E-08 48.8 7.3 83 12-97 54-144 (252)
29 PF02611 CDH: CDP-diacylglycer 97.3 0.00092 2E-08 48.1 6.4 83 12-97 25-115 (222)
30 COG5075 Uncharacterized conser 97.3 0.00063 1.4E-08 49.5 5.1 86 11-98 153-250 (305)
31 cd00608 GalT Galactose-1-phosp 96.9 0.0085 1.8E-07 45.5 8.5 61 35-98 95-161 (329)
32 COG2134 Cdh CDP-diacylglycerol 96.7 0.0098 2.1E-07 42.5 7.1 83 12-97 54-144 (252)
33 COG4360 APA2 ATP adenylyltrans 96.1 0.012 2.5E-07 43.0 4.6 67 22-98 94-162 (298)
34 PLN02643 ADP-glucose phosphory 95.8 0.14 3.1E-06 39.1 9.5 62 34-98 108-175 (336)
35 COG1085 GalT Galactose-1-phosp 95.1 0.21 4.6E-06 38.2 8.4 62 36-98 97-162 (338)
36 TIGR00209 galT_1 galactose-1-p 94.7 0.56 1.2E-05 36.1 9.8 62 34-98 106-171 (347)
37 PRK11720 galactose-1-phosphate 94.6 0.38 8.3E-06 36.9 8.8 62 34-98 106-171 (346)
38 PF01087 GalP_UDP_transf: Gala 88.3 2.7 5.8E-05 29.2 6.4 64 35-98 112-178 (183)
39 PF01076 Mob_Pre: Plasmid reco 79.2 8 0.00017 27.1 5.7 48 49-101 94-143 (196)
40 PF03432 Relaxase: Relaxase/Mo 78.6 4.8 0.0001 28.6 4.5 37 61-101 74-112 (242)
41 PF14317 YcxB: YcxB-like prote 77.2 7.3 0.00016 21.1 4.2 37 15-61 24-60 (62)
42 PRK13878 conjugal transfer rel 72.2 4.9 0.00011 34.1 3.5 33 63-99 88-122 (746)
43 PRK13863 type IV secretion sys 65.6 22 0.00047 28.2 5.6 34 62-99 99-139 (446)
44 TIGR03793 TOMM_pelo TOMM prope 55.2 18 0.00039 21.7 2.9 22 33-57 52-73 (77)
45 smart00537 DCX Domain in the D 52.3 14 0.00029 22.7 2.1 29 21-49 7-35 (89)
46 PF01446 Rep_1: Replication pr 49.1 85 0.0018 22.8 6.1 41 57-97 41-87 (233)
47 PF00552 IN_DBD_C: Integrase D 48.4 38 0.00083 18.9 3.3 31 12-45 21-51 (55)
48 cd01617 DCX Ubiquitin-like dom 46.8 28 0.00061 20.7 2.9 29 21-49 2-30 (80)
49 COG1655 Uncharacterized protei 40.5 33 0.00072 25.2 2.8 43 1-44 21-70 (267)
50 PF06619 DUF1149: Protein of u 40.2 90 0.002 20.7 4.6 41 39-79 79-125 (127)
51 PF04270 Strep_his_triad: Stre 39.1 71 0.0015 17.8 5.1 37 12-59 11-47 (53)
52 PRK09458 pspB phage shock prot 38.0 69 0.0015 19.2 3.5 23 48-70 34-56 (75)
53 PF02729 OTCace_N: Aspartate/o 33.1 86 0.0019 20.8 3.8 20 42-61 1-20 (142)
54 PRK03879 ribonuclease P protei 33.0 88 0.0019 19.5 3.6 34 12-50 32-65 (96)
55 smart00538 POP4 A domain found 32.4 88 0.0019 19.3 3.5 36 12-51 30-65 (92)
56 KOG4122|consensus 30.2 79 0.0017 16.2 2.4 18 14-31 15-32 (38)
57 PF06667 PspB: Phage shock pro 29.6 1.1E+02 0.0024 18.2 3.5 23 48-70 34-56 (75)
58 COG0564 RluA Pseudouridylate s 29.3 59 0.0013 24.4 2.7 17 11-27 76-92 (289)
59 cd00165 S4 S4/Hsp/ tRNA synthe 28.1 47 0.001 17.7 1.7 13 13-25 57-69 (70)
60 PF04835 Pox_A9: A9 protein co 28.0 14 0.0003 20.7 -0.6 11 109-119 15-25 (54)
61 COG2928 Uncharacterized conser 27.4 88 0.0019 22.7 3.2 35 19-54 152-187 (222)
62 COG0540 PyrB Aspartate carbamo 27.2 69 0.0015 24.5 2.7 21 40-60 6-26 (316)
63 PF01868 UPF0086: Domain of un 25.6 1.6E+02 0.0034 17.9 3.8 29 13-45 32-60 (89)
64 PF06907 Latexin: Latexin; In 22.5 1E+02 0.0022 22.4 2.7 23 75-97 176-198 (220)
65 PF08751 TrwC: TrwC relaxase; 22.5 52 0.0011 24.7 1.4 12 87-98 157-168 (296)
66 PF10335 DUF294_C: Putative nu 22.1 1.5E+02 0.0032 19.6 3.4 28 43-70 112-139 (145)
67 PF02893 GRAM: GRAM domain; I 21.7 1.5E+02 0.0032 16.5 3.0 35 13-47 31-65 (69)
68 PF12616 DUF3775: Protein of u 21.5 64 0.0014 19.3 1.4 20 47-66 10-29 (75)
69 PF03389 MobA_MobL: MobA/MobL 21.2 3.1E+02 0.0068 19.5 5.3 20 76-98 102-121 (216)
70 PF04986 Y2_Tnp: Putative tran 20.9 1.3E+02 0.0028 20.8 3.0 22 78-99 3-24 (183)
71 PF14394 DUF4423: Domain of un 20.7 2.9E+02 0.0063 18.9 4.7 51 41-98 119-170 (171)
72 PF05199 GMC_oxred_C: GMC oxid 20.1 2.4E+02 0.0053 17.7 4.3 41 30-70 1-46 (144)
No 1
>PRK10687 purine nucleoside phosphoramidase; Provisional
Probab=100.00 E-value=2.8e-35 Score=192.82 Aligned_cols=101 Identities=22% Similarity=0.205 Sum_probs=94.7
Q ss_pred CCccccccc-CCCceEEEECCcEEEEecCCCCCCeeEEEEecCccCCccCCCHhHHHHHHHHHHHHHHHHH--hcCCCce
Q psy14209 1 MSFLSKIIF-KPNTWWFVTDNDVVAFPDIKPAAKHHTLVISKQHVLNAKVLTSEHKALVQWLEDLSAITYL--CLMVIFH 77 (119)
Q Consensus 1 ~c~fc~ii~-e~~~~iv~e~~~~~a~~~~~p~~~gh~lViPk~H~~~~~~L~~~e~~~l~~~~~~~~~~~~--~~~~~~~ 77 (119)
.|+||+|++ |.|..+|||||.++||.|.+|.++||+||+||+|++++.+|+++++.++..++..++++++ .++.++|
T Consensus 4 ~CiFC~I~~g~~p~~~v~edd~~~aflD~~P~~~GH~LViPK~H~~~l~dl~~~~~~~l~~l~~~~~~~~~~~~~~~~g~ 83 (119)
T PRK10687 4 ETIFSKIIRREIPSDIVYQDELVTAFRDISPQAPTHILIIPNILIPTVNDVSAEHEQALGRMITVAAKIAEQEGIAEDGY 83 (119)
T ss_pred CCchhhhhcCCCCCCEEEECCCEEEEEcCCCCCCccEEEEehhHhCChhHCChHHHHHHHHHHHHHHHHHHHhCCCCCce
Confidence 499999999 9999999999999999999999999999999999999999999999999999999988875 5678899
Q ss_pred EEEEeCCC--CCccceeEEEEecCCC
Q psy14209 78 RYGFHWPP--FYSIGHLHLHVIAPVS 101 (119)
Q Consensus 78 ~~~~~~~~--~q~v~HlH~Hiip~~~ 101 (119)
++++|+|+ ||+|+|+|+|||||+.
T Consensus 84 ~l~~n~G~~agQ~V~HlHiHvI~g~~ 109 (119)
T PRK10687 84 RLIMNTNRHGGQEVYHIHMHLLGGRP 109 (119)
T ss_pred EEEEeCCCcCCcccCEEEEEECCCcc
Confidence 99999984 9999999999999866
No 2
>cd01276 PKCI_related Protein Kinase C Interacting protein related (PKCI): PKCI and related proteins belong to the ubiquitous HIT family of hydrolases that act on alpha-phosphates of ribonucleotides. The members of this subgroup have a conserved HxHxHxx motif (x is a hydrophobic residue) that is a signature for this family. No enzymatic activity has been reported however, for PKCI and its related members.
Probab=100.00 E-value=1e-33 Score=180.88 Aligned_cols=99 Identities=29% Similarity=0.266 Sum_probs=93.5
Q ss_pred CCccccccc-CCCceEEEECCcEEEEecCCCCCCeeEEEEecCccCCccCCCHhHHHHHHHHHHHHHHHHHhcC--CCce
Q psy14209 1 MSFLSKIIF-KPNTWWFVTDNDVVAFPDIKPAAKHHTLVISKQHVLNAKVLTSEHKALVQWLEDLSAITYLCLM--VIFH 77 (119)
Q Consensus 1 ~c~fc~ii~-e~~~~iv~e~~~~~a~~~~~p~~~gh~lViPk~H~~~~~~L~~~e~~~l~~~~~~~~~~~~~~~--~~~~ 77 (119)
.|+||+|++ |.+.++|+||+.++||+|.+|.+|||+||+||+|++++.+|+++++.+++.+++.++++.+.++ ..+|
T Consensus 1 ~C~fc~i~~~e~~~~iv~e~~~~~a~~~~~p~~~gh~lIiPk~H~~~~~dl~~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 80 (104)
T cd01276 1 DCIFCKIIRGEIPAKKVYEDDEVLAFHDINPQAPVHILVIPKKHIASLSDATEEDEELLGHLLSAAAKVAKDLGIAEDGY 80 (104)
T ss_pred CCcceecccCCCccCEEEECCCEEEEECCCCCCCCEEEEEecceeCChHHcccccHHHHHHHHHHHHHHHHHhCCCCCCE
Confidence 599999999 8889999999999999999999999999999999999999999999999999999998888765 6899
Q ss_pred EEEEeCCC--CCccceeEEEEecC
Q psy14209 78 RYGFHWPP--FYSIGHLHLHVIAP 99 (119)
Q Consensus 78 ~~~~~~~~--~q~v~HlH~Hiip~ 99 (119)
++++|+|+ ||+++|+|+|||++
T Consensus 81 n~~~~~g~~~g~~v~H~HiHii~~ 104 (104)
T cd01276 81 RLVINCGKDGGQEVFHLHLHLLGG 104 (104)
T ss_pred EEEEeCCCCCCCceeEEEEEEeCC
Confidence 99999986 89999999999974
No 3
>COG0537 Hit Diadenosine tetraphosphate (Ap4A) hydrolase and other HIT family hydrolases [Nucleotide transport and metabolism / Carbohydrate transport and metabolism / General function prediction only]
Probab=100.00 E-value=5.9e-33 Score=186.06 Aligned_cols=101 Identities=32% Similarity=0.294 Sum_probs=91.2
Q ss_pred CCccccccc-CCCceEEEECCcEEEEecCCCCCCeeEEEEecCccCCccCCCHhHHHHHHHHHHHHHHHHH-hcCCCceE
Q psy14209 1 MSFLSKIIF-KPNTWWFVTDNDVVAFPDIKPAAKHHTLVISKQHVLNAKVLTSEHKALVQWLEDLSAITYL-CLMVIFHR 78 (119)
Q Consensus 1 ~c~fc~ii~-e~~~~iv~e~~~~~a~~~~~p~~~gh~lViPk~H~~~~~~L~~~e~~~l~~~~~~~~~~~~-~~~~~~~~ 78 (119)
+|+||+|++ |.++.+||||++++||+|.+|.++||+||+||+|+.++.+|+++++..+..+.+.+.+.++ .++++|||
T Consensus 2 ~ciFc~ii~~e~~~~~Vye~~~~~afld~~P~~~gH~LviPk~h~~~l~~l~~~~~~~l~~~~~~ia~al~~~~~~~g~n 81 (138)
T COG0537 2 MCIFCKIIRGEIPANKVYEDEHVLAFLDIYPAAPGHTLVIPKRHVSDLEDLDPEELAELFLLAQKIAKALKEAFGADGYN 81 (138)
T ss_pred CceeeeeecCCCCceEEEeCCCEEEEecCCCCCCCeEEEEeccchhhhhhCCHHHHHHHHHHHHHHHHHHHHHhCCCceE
Confidence 699999999 9999999999999999999999999999999999999999999998777776665544444 77789999
Q ss_pred EEEeCCC--CCccceeEEEEecCCC
Q psy14209 79 YGFHWPP--FYSIGHLHLHVIAPVS 101 (119)
Q Consensus 79 ~~~~~~~--~q~v~HlH~Hiip~~~ 101 (119)
+++|+|. ||+|+|+|+|||||+.
T Consensus 82 i~~N~g~~agq~V~HlH~HvIPr~~ 106 (138)
T COG0537 82 IGINNGKAAGQEVFHLHIHIIPRYK 106 (138)
T ss_pred EEEecCcccCcCcceEEEEEcCCcC
Confidence 9999974 8999999999999866
No 4
>cd01277 HINT_subgroup HINT (histidine triad nucleotide-binding protein) subgroup: Members of this CD belong to the superfamily of histidine triad hydrolases that act on alpha-phosphate of ribonucleotides. This subgroup includes members from all three forms of cellular life. Although the biochemical function has not been characterised for many of the members of this subgroup, the proteins from Yeast have been shown to be involved in secretion, peroxisome formation and gene expression.
Probab=100.00 E-value=4.7e-32 Score=172.66 Aligned_cols=99 Identities=30% Similarity=0.246 Sum_probs=90.9
Q ss_pred CCccccccc-CCCceEEEECCcEEEEecCCCCCCeeEEEEecCccCCccCCCHhHHHHHHHHHHHHHHHHH-hcCCCceE
Q psy14209 1 MSFLSKIIF-KPNTWWFVTDNDVVAFPDIKPAAKHHTLVISKQHVLNAKVLTSEHKALVQWLEDLSAITYL-CLMVIFHR 78 (119)
Q Consensus 1 ~c~fc~ii~-e~~~~iv~e~~~~~a~~~~~p~~~gh~lViPk~H~~~~~~L~~~e~~~l~~~~~~~~~~~~-~~~~~~~~ 78 (119)
+|+||+|++ |.+.++|+|+++++||.|.+|.+|||++|+||+|++++.+|+++|+.+|+.+++.+.+.++ .+++.+||
T Consensus 1 ~C~~c~ii~~e~~~~iv~e~~~~~a~~~~~~~~pg~~lI~Pk~H~~~~~~l~~~e~~~l~~~~~~v~~~l~~~~~~~~~n 80 (103)
T cd01277 1 DCIFCKIIAGEIPSYKVYEDDHVLAFLDINPASKGHTLVIPKKHYENLLDLDPEELAELILAAKKVARALKKALKADGLN 80 (103)
T ss_pred CCccccccCCCCCCCEEEeCCCEEEEECCCCCCCeeEEEEeccccCChhhCCHHHHHHHHHHHHHHHHHHHHhcCCCceE
Confidence 599999999 8888899999999999999999999999999999999999999999999988886655555 67788999
Q ss_pred EEEeCCC--CCccceeEEEEecC
Q psy14209 79 YGFHWPP--FYSIGHLHLHVIAP 99 (119)
Q Consensus 79 ~~~~~~~--~q~v~HlH~Hiip~ 99 (119)
+++|+++ ||+++|+|+||+||
T Consensus 81 ~~~~~~~~~g~~~~H~HiHiiPR 103 (103)
T cd01277 81 ILQNNGRAAGQVVFHVHVHVIPR 103 (103)
T ss_pred EEEeCCcccCcccCEEEEEEccC
Confidence 9999875 89999999999986
No 5
>KOG3275|consensus
Probab=99.98 E-value=7.1e-32 Score=172.23 Aligned_cols=105 Identities=26% Similarity=0.270 Sum_probs=95.0
Q ss_pred CCccccccc-CCCceEEEECCcEEEEecCCCCCCeeEEEEecCccCCccCCCHhHHHHHHHHHHHHHHHHHhcCC-CceE
Q psy14209 1 MSFLSKIIF-KPNTWWFVTDNDVVAFPDIKPAAKHHTLVISKQHVLNAKVLTSEHKALVQWLEDLSAITYLCLMV-IFHR 78 (119)
Q Consensus 1 ~c~fc~ii~-e~~~~iv~e~~~~~a~~~~~p~~~gh~lViPk~H~~~~~~L~~~e~~~l~~~~~~~~~~~~~~~~-~~~~ 78 (119)
+|+||+|++ |.|..+|||||.+.||.|+.|.+|||+|||||+|++.++.+.+.+.++|+.+|.++++++++++- +|||
T Consensus 17 ~tIF~kIi~keIPa~ii~Edd~~lAF~Di~Pqap~HfLvIPK~hi~~~s~aed~~~e~Lg~ll~~~k~vak~~Gl~~gYr 96 (127)
T KOG3275|consen 17 PTIFCKIIRKEIPAKIIFEDDRCLAFHDIAPQAPGHFLVIPKKHITQLSKAEDRDDELLGHLLPVAKKVAKALGLEDGYR 96 (127)
T ss_pred CcEeeeeecccCCcceEeeccceEEEEecCCCCCceEEEeecccccchhhcccCCHHHHHHHHHHHHHHHHHhCccccee
Confidence 599999999 99999999999999999999999999999999998888888777778899999999999997764 6799
Q ss_pred EEEeCCC--CCccceeEEEEecCCCCCCCc
Q psy14209 79 YGFHWPP--FYSIGHLHLHVIAPVSEMSFL 106 (119)
Q Consensus 79 ~~~~~~~--~q~v~HlH~Hiip~~~~~~~~ 106 (119)
+.+|+|. .|+|+|+|+|++|+ .+++|.
T Consensus 97 vv~NnG~~g~QsV~HvH~HvlgG-rqm~WP 125 (127)
T KOG3275|consen 97 VVQNNGKDGHQSVYHVHLHVLGG-RQMQWP 125 (127)
T ss_pred EEEcCCcccceEEEEEEEEEeCC-cccCCC
Confidence 9999997 79999999999974 456553
No 6
>cd01275 FHIT FHIT (fragile histidine family): FHIT proteins, related to the HIT family carry a motif HxHxH/Qxx (x, is a hydrophobic amino acid), On the basis of sequence, substrate specificity, structure, evolution and mechanism, HIT proteins are classified into three branches: the Hint branch, which consists of adenosine 5' -monophosphoramide hydrolases, the Fhit branch, that consists of diadenosine polyphosphate hydrolases, and the GalT branch consisting of specific nucloside monophosphate transferases. Fhit plays a very important role in the development of tumours. Infact, Fhit deletions are among the earliest and most frequent genetic alterations in the development of tumours.
Probab=99.98 E-value=2.6e-31 Score=175.36 Aligned_cols=101 Identities=19% Similarity=0.157 Sum_probs=91.6
Q ss_pred Cccccccc-CCC-ceEEEECCcEEEEecCCCCCCeeEEEEecCccCCccCCCHhHHHHHHHHHHHHHHHHH-hcCCCceE
Q psy14209 2 SFLSKIIF-KPN-TWWFVTDNDVVAFPDIKPAAKHHTLVISKQHVLNAKVLTSEHKALVQWLEDLSAITYL-CLMVIFHR 78 (119)
Q Consensus 2 c~fc~ii~-e~~-~~iv~e~~~~~a~~~~~p~~~gh~lViPk~H~~~~~~L~~~e~~~l~~~~~~~~~~~~-~~~~~~~~ 78 (119)
|+||+|++ |.+ +++|+|++.++|++|.+|.++||+||+||+|++++.+|+++|+.+++.++..+.+.++ .++..+|+
T Consensus 1 C~fC~i~~~e~~~~~iv~e~~~~~~~~~~~p~~~gh~lIiPk~H~~~~~~L~~~e~~~l~~~~~~v~~~l~~~~~~~~~n 80 (126)
T cd01275 1 CVFCDIPIKPDEDNLVFYRTKHSFAVVNLYPYNPGHVLVVPYRHVPRLEDLTPEEIADLFKLVQLAMKALKVVYKPDGFN 80 (126)
T ss_pred CccccCccCCCccccEEEeCCCEEEEEcCCCCCCCcEEEEeccccCChhhCCHHHHHHHHHHHHHHHHHHHHhcCCCceE
Confidence 99999999 765 7999999999999999999999999999999999999999999999888887666666 66778999
Q ss_pred EEEeCCC--CCccceeEEEEecCCCC
Q psy14209 79 YGFHWPP--FYSIGHLHLHVIAPVSE 102 (119)
Q Consensus 79 ~~~~~~~--~q~v~HlH~Hiip~~~~ 102 (119)
+++|+++ ||+++|+|+|||||..+
T Consensus 81 ~~~~~g~~~gq~v~H~HiHiiPR~~~ 106 (126)
T cd01275 81 IGINDGKAGGGIVPHVHIHIVPRWNG 106 (126)
T ss_pred EEEeCCcccCCCcCEEEEEEeCCcCC
Confidence 9999987 89999999999998543
No 7
>cd01278 aprataxin_related aprataxin related: Aprataxin, a HINT family hydrolase is mutated in ataxia oculomotor apraxia syndrome. All the members of this subgroup have the conserved HxHxHxx (where x is a hydrophobic residue) signature motif. Members of this subgroup are predominantly eukaryotic in origin.
Probab=99.97 E-value=2.7e-31 Score=169.83 Aligned_cols=98 Identities=40% Similarity=0.595 Sum_probs=90.0
Q ss_pred CCccccccc-CC--CceEEEECCcEEEEecCCCCCCeeEEEEecCccCCccCCCHhHHHHHHHHHHHHHHHHH-h--cCC
Q psy14209 1 MSFLSKIIF-KP--NTWWFVTDNDVVAFPDIKPAAKHHTLVISKQHVLNAKVLTSEHKALVQWLEDLSAITYL-C--LMV 74 (119)
Q Consensus 1 ~c~fc~ii~-e~--~~~iv~e~~~~~a~~~~~p~~~gh~lViPk~H~~~~~~L~~~e~~~l~~~~~~~~~~~~-~--~~~ 74 (119)
.|+||+|++ |. ++++|+||+.++||.|++|.+|||+||+||+|+.++.+|+++++++++++++.+.+.++ . +++
T Consensus 1 ~c~fc~i~~~e~~~~~~iv~~~~~~~a~~~~~p~~~~h~lIiPk~h~~~~~~l~~~~~~~l~~~~~~~~~~l~~~~~~~~ 80 (104)
T cd01278 1 LCHFCDIAKRRDPDPEDQVYEDDRVVVFKDIYPKARHHYLVIPKEHIASLKALTKEDVPLLEHMETVGREKLLRSDNTDP 80 (104)
T ss_pred CCccccCccCCCCCCccEEEeCCCEEEEECCCCCCCceEEEEecCCCCChHHCCHhHHHHHHHHHHHHHHHHHHHcCCCc
Confidence 499999998 65 68999999999999999999999999999999999999999999999999998877554 2 567
Q ss_pred CceEEEEeCCCCCccceeEEEEec
Q psy14209 75 IFHRYGFHWPPFYSIGHLHLHVIA 98 (119)
Q Consensus 75 ~~~~~~~~~~~~q~v~HlH~Hiip 98 (119)
.+||+|+|.+|.|+++|+|+|||.
T Consensus 81 ~~~n~g~h~~p~~~v~H~H~Hvi~ 104 (104)
T cd01278 81 SEFRFGFHAPPFTSVSHLHLHVIA 104 (104)
T ss_pred cCeEEEeCCCCCcCeeeEEEEeeC
Confidence 899999999999999999999983
No 8
>PF01230 HIT: HIT domain; InterPro: IPR001310 The Histidine Triad (HIT) motif, His-x-His-x-His-x-x (x, a hydrophobic amino acid) was identified as being highly conserved in a variety of organisms []. Crystal structure of rabbit Hint, purified as an adenosine and AMP-binding protein, showed that proteins in the HIT superfamily are conserved as nucleotide-binding proteins and that Hint homologues, which are found in all forms of life, are structurally related to Fhit homologues and GalT-related enzymes, which have more restricted phylogenetic profiles []. Hint homologues including rabbit Hint and yeast Hnt1 hydrolyse adenosine 5' monophosphoramide substrates such as AMP-NH2 and AMP-lysine to AMP plus the amine product and function as positive regulators of Cdk7/Kin28 in vivo []. Fhit homologues are diadenosine polyphosphate hydrolases [] and function as tumour suppressors in human and mouse [] though the tumour suppressing function of Fhit does not depend on ApppA hydrolysis []. The third branch of the HIT superfamily, which includes GalT homologues, contains a related His-X-His-X-Gln motif and transfers nucleoside monophosphate moieties to phosphorylated second substrates rather than hydrolysing them [].; PDB: 3LB5_B 1EMS_A 1Y23_A 3ANO_B 1KPE_B 1KPC_A 4EQE_B 1KPA_A 1KPB_B 4EQG_B ....
Probab=99.96 E-value=2.8e-28 Score=154.43 Aligned_cols=92 Identities=29% Similarity=0.242 Sum_probs=80.6
Q ss_pred CCCceEEEECCcEEEEecCCCCCCeeEEEEecCccCCccCCCHhHHHHHHHHHHHHHHHHH-hcCCCceEEEEeCCC--C
Q psy14209 10 KPNTWWFVTDNDVVAFPDIKPAAKHHTLVISKQHVLNAKVLTSEHKALVQWLEDLSAITYL-CLMVIFHRYGFHWPP--F 86 (119)
Q Consensus 10 e~~~~iv~e~~~~~a~~~~~p~~~gh~lViPk~H~~~~~~L~~~e~~~l~~~~~~~~~~~~-~~~~~~~~~~~~~~~--~ 86 (119)
|.++++|||||.++||+|.+|.++||+||+||+|++++.+|+++++..+..+++.+.+.++ .++.++|+++.++++ |
T Consensus 3 e~~~~vv~e~~~~~~~~~~~p~~~gh~LVipk~H~~~l~dl~~~~~~~l~~~~~~v~~~l~~~~~~~~~~~~~~~g~~~g 82 (98)
T PF01230_consen 3 EIPARVVYEDDHFVAFLDIFPISPGHLLVIPKRHVESLSDLPPEERAELMQLVQKVAKALKEAFGPDGYNVIINNGPAAG 82 (98)
T ss_dssp SSHCEEEEE-SSEEEEEESSTSSTTEEEEEESSTGSSGGGSHHHHHHHHHHHHHHHHHHHHHHHTTSEEEEEEEESGGGT
T ss_pred CCCeeEEEECCCEEEEEcCCCCCCeEEEEEecccccchhcCCHHHHHHHHHHHHHHHHHHhcccccceeeccccchhhhc
Confidence 6789999999999999999999999999999999999999999998888877776555555 778899999999875 9
Q ss_pred CccceeEEEEecCCC
Q psy14209 87 YSIGHLHLHVIAPVS 101 (119)
Q Consensus 87 q~v~HlH~Hiip~~~ 101 (119)
|+++|+|+|||||++
T Consensus 83 q~v~HlH~HviPR~~ 97 (98)
T PF01230_consen 83 QSVPHLHFHVIPRYK 97 (98)
T ss_dssp SSSSS-EEEEEEEST
T ss_pred CccCEEEEEEecccC
Confidence 999999999999754
No 9
>KOG4359|consensus
Probab=99.95 E-value=2.4e-27 Score=155.83 Aligned_cols=118 Identities=41% Similarity=0.733 Sum_probs=106.9
Q ss_pred CCccccccc-C-CC-ceEEEECCcEEEEecCCCCCCeeEEEEecCccCCccCCCHhHHHHHHHHHHHHHHHHH---hcCC
Q psy14209 1 MSFLSKIIF-K-PN-TWWFVTDNDVVAFPDIKPAAKHHTLVISKQHVLNAKVLTSEHKALVQWLEDLSAITYL---CLMV 74 (119)
Q Consensus 1 ~c~fc~ii~-e-~~-~~iv~e~~~~~a~~~~~p~~~gh~lViPk~H~~~~~~L~~~e~~~l~~~~~~~~~~~~---~~~~ 74 (119)
.|.||+|+. . .+ .-...|++.+++|.|++|.+.-|.|++||+|+.+..+|+.++..++.+|+.+++.+++ ....
T Consensus 32 ~C~FCDia~r~~~~~ell~~En~~~V~fkDikPaA~~HYLvipK~Hi~~~~~L~k~~V~Lve~m~~~G~~~l~r~~~td~ 111 (166)
T KOG4359|consen 32 TCVFCDIAGRQDPGTELLHCENEDLVCFKDIKPAATHHYLVVPKKHIGNCRTLRKDQVELVENMVTVGKTILERNNFTDF 111 (166)
T ss_pred ceEEEEeecccCCCCceeEecCCcEEEEecCCccccceEEEechHHcCChhhcchhhHHHHHHHHHHHHHHHHHhccCCc
Confidence 499999998 4 33 4456899999999999999999999999999999999999999999999999998887 3345
Q ss_pred CceEEEEeCCCCCccceeEEEEecCCCCCCCceeeeeccCccccC
Q psy14209 75 IFHRYGFHWPPFYSIGHLHLHVIAPVSEMSFLSKIIFKPNTWWFV 119 (119)
Q Consensus 75 ~~~~~~~~~~~~q~v~HlH~Hiip~~~~~~~~~~~~~~~~~~w~~ 119 (119)
+..++|||.+|.-||.|||+|+|-|..||+|.+|+.|.| |.||+
T Consensus 112 ~~~r~GFHLPPf~SV~HLHlH~I~P~~DMgf~sKl~FrP-s~wFK 155 (166)
T KOG4359|consen 112 TNVRMGFHLPPFCSVSHLHLHVIAPVDDMGFLSKLVFRP-SYWFK 155 (166)
T ss_pred hheeEeccCCCcceeeeeeEeeecchHHhchhheeEeec-ceEee
Confidence 678999999999999999999999999999999999999 99985
No 10
>PF11969 DcpS_C: Scavenger mRNA decapping enzyme C-term binding; PDB: 1VLR_B 1XMM_D 1XML_B 1ST0_A 3BLA_B 3BL9_B 3BL7_B 1ST4_B 1XQU_B.
Probab=99.94 E-value=3.8e-27 Score=153.74 Aligned_cols=105 Identities=35% Similarity=0.480 Sum_probs=87.4
Q ss_pred CCccccccc-CCCceEEEECCcEEEEecCCCCCCeeEEEEecC-ccCCccCCCHhHHHHHHHHHHHHHHHHHhc-----C
Q psy14209 1 MSFLSKIIF-KPNTWWFVTDNDVVAFPDIKPAAKHHTLVISKQ-HVLNAKVLTSEHKALVQWLEDLSAITYLCL-----M 73 (119)
Q Consensus 1 ~c~fc~ii~-e~~~~iv~e~~~~~a~~~~~p~~~gh~lViPk~-H~~~~~~L~~~e~~~l~~~~~~~~~~~~~~-----~ 73 (119)
+|+||.|++ |.+++++|||+.+++|.|.+|.++.|+||+||+ |+.++.+|++++.++|..|...++++++.. .
T Consensus 1 ~cif~~i~~~~~~~~vly~d~~~v~~~D~~P~a~~H~LviPk~~~i~sl~~L~~~~~~lL~~m~~~~~~~~~~~~~~~~~ 80 (116)
T PF11969_consen 1 NCIFCIIIRGEEPERVLYEDDDFVVFKDIYPKAPVHLLVIPKDPHIRSLRDLTPEHLPLLERMREVARELLKEEYPGDLD 80 (116)
T ss_dssp HHHHHHHTTSSSGGGESEEETSEEEEE-TT-SCCEEEEEEESSSS-SSGGG--GGGHHHHHHHHHHHHHHHHHHH-TT-E
T ss_pred CccceEeEcCCCCCcEEEEeCCEEEeeCCCCCcCcEEEEEeecCCCCChHHcCHHHHHHHHHHHHHHHHHHHHhcccccc
Confidence 499999999 889999999999999999999999999999999 999999999999999999999999999822 3
Q ss_pred CCceEEEEeCCCCCccceeEEEEecCCCCCCCce
Q psy14209 74 VIFHRYGFHWPPFYSIGHLHLHVIAPVSEMSFLS 107 (119)
Q Consensus 74 ~~~~~~~~~~~~~q~v~HlH~Hiip~~~~~~~~~ 107 (119)
...+++|||.+| |+.|||+|+|.+..++++.+
T Consensus 81 ~~~~~~gfH~~P--S~~HLHlHvi~~~~~s~~lk 112 (116)
T PF11969_consen 81 SDDIRLGFHYPP--SVYHLHLHVISPDFDSPCLK 112 (116)
T ss_dssp GGGEEEEEESS---SSSS-EEEEEETTS--TTSB
T ss_pred hhhhcccccCCC--CcceEEEEEccCCCcCcccc
Confidence 568999999998 99999999998766665554
No 11
>PRK11720 galactose-1-phosphate uridylyltransferase; Provisional
Probab=99.94 E-value=2.1e-26 Score=174.05 Aligned_cols=99 Identities=20% Similarity=0.170 Sum_probs=86.9
Q ss_pred CCccccccc-CCC--ceEEEECCcEEEEecCCCCCCeeEEEEecCccCCccCCCHhHHHHHHHHHHHHHHHHH-hcC-CC
Q psy14209 1 MSFLSKIIF-KPN--TWWFVTDNDVVAFPDIKPAAKHHTLVISKQHVLNAKVLTSEHKALVQWLEDLSAITYL-CLM-VI 75 (119)
Q Consensus 1 ~c~fc~ii~-e~~--~~iv~e~~~~~a~~~~~p~~~gh~lViPk~H~~~~~~L~~~e~~~l~~~~~~~~~~~~-~~~-~~ 75 (119)
.|+||+|++ |.+ +++|+||+.|+||+|++|.+|||+||+||+|+.++.+|+++++..|+.+++.+.+.++ .++ ..
T Consensus 195 ~Clfcdii~~E~~~~~RiV~End~fvAf~p~~p~~P~h~lIiPKrH~~~~~dl~dee~~~La~~lk~v~~~l~~~~~~~~ 274 (346)
T PRK11720 195 SPLLVDYVQRELADGERIVVETEHWLAVVPYWAAWPFETLLLPKAHVLRLTDLTDAQRDDLALALKKLTSRYDNLFQCSF 274 (346)
T ss_pred CeEHHHHHHhhhhcCCeEEEECCCEEEEeccccCCCCeEEEecccCCCChhhCCHHHHHHHHHHHHHHHHHHHHHhCCCC
Confidence 499999999 765 6999999999999999999999999999999999999999999888888775544444 564 34
Q ss_pred ceEEEEeCCC----CCccceeEEEEecC
Q psy14209 76 FHRYGFHWPP----FYSIGHLHLHVIAP 99 (119)
Q Consensus 76 ~~~~~~~~~~----~q~v~HlH~Hiip~ 99 (119)
+|++++|++| +|+++|+|+||+||
T Consensus 275 pyn~~~h~~p~~~~~~~~~H~HihiiPr 302 (346)
T PRK11720 275 PYSMGWHGAPFNGEENDHWQLHAHFYPP 302 (346)
T ss_pred CCceeEEecccCCCCCeeEEEEEEEeCC
Confidence 7999999986 46899999999998
No 12
>TIGR00209 galT_1 galactose-1-phosphate uridylyltransferase, family 1. This enzyme is involved in glucose and galactose interconversion. This model describes one of two extremely distantly related branches of the model pfam01087 from PFAM.
Probab=99.93 E-value=4.7e-26 Score=172.25 Aligned_cols=99 Identities=19% Similarity=0.178 Sum_probs=86.4
Q ss_pred CCccccccc-CC--CceEEEECCcEEEEecCCCCCCeeEEEEecCccCCccCCCHhHHHHHHHHHHHHHHHHH-hcCC-C
Q psy14209 1 MSFLSKIIF-KP--NTWWFVTDNDVVAFPDIKPAAKHHTLVISKQHVLNAKVLTSEHKALVQWLEDLSAITYL-CLMV-I 75 (119)
Q Consensus 1 ~c~fc~ii~-e~--~~~iv~e~~~~~a~~~~~p~~~gh~lViPk~H~~~~~~L~~~e~~~l~~~~~~~~~~~~-~~~~-~ 75 (119)
.|+||+|++ |. +.++|+||+.|+||+|++|.+|||+||+||+|+.++.+|+++++..|+.+++.+.+.++ .++. .
T Consensus 195 ~clfcdIi~~E~~~~~riV~End~fvAf~p~~p~~Pgh~lIiPKrH~~~~~dl~d~e~~~La~~lk~v~~~l~~~~~~~~ 274 (347)
T TIGR00209 195 SPMLVDYVKRELADKSRTVVETEHWIAVVPYWAIWPFETLLLPKAHVLRITDLTDAQRSDLALILKKLTSKYDNLFETSF 274 (347)
T ss_pred CccHHHHHHhHhhcCCeEEEECCCEEEEeccCCCCCCeEEEeeccCCCChhhCCHHHHHHHHHHHHHHHHHHHHHhCCCC
Confidence 499999999 75 68999999999999999999999999999999999999999999999888876554444 5644 4
Q ss_pred ceEEEEeCCC--C--CccceeEEEEecC
Q psy14209 76 FHRYGFHWPP--F--YSIGHLHLHVIAP 99 (119)
Q Consensus 76 ~~~~~~~~~~--~--q~v~HlH~Hiip~ 99 (119)
+||+++|++| + +..+|+|+||+||
T Consensus 275 pYn~~~h~~p~~~~~~~~~H~HihiiPr 302 (347)
T TIGR00209 275 PYSMGWHGAPFNGEENQHWQLHAHFYPP 302 (347)
T ss_pred CcceeEEecccCCCCCcEEEEEEEEeCC
Confidence 8999999986 3 4667899999998
No 13
>cd00608 GalT Galactose-1-phosphate uridyl transferase (GalT): This enzyme plays a key role in galactose metabolism by catalysing the transfer of a uridine 5'-phosphoryl group from UDP-galactose 1-phosphate. The structure of E.coli GalT reveals that the enzyme contains two identical subunits. It also demonstrates that the active site is formed by amino acid residues from both subunits of the dimer.
Probab=99.93 E-value=1.2e-25 Score=169.20 Aligned_cols=101 Identities=17% Similarity=0.114 Sum_probs=89.2
Q ss_pred CCccccccc-CCC--ceEEEECCcEEEEecCCCCCCeeEEEEecCccCCccCCCHhHHHHHHHHHHHHHHHHH-hcC-CC
Q psy14209 1 MSFLSKIIF-KPN--TWWFVTDNDVVAFPDIKPAAKHHTLVISKQHVLNAKVLTSEHKALVQWLEDLSAITYL-CLM-VI 75 (119)
Q Consensus 1 ~c~fc~ii~-e~~--~~iv~e~~~~~a~~~~~p~~~gh~lViPk~H~~~~~~L~~~e~~~l~~~~~~~~~~~~-~~~-~~ 75 (119)
.|+||+|++ |.+ .++|+|||.|+||+|++|.+|||+||+||+|+.++.+|+++++..|+.+++.+.+.+. .++ ..
T Consensus 185 ~clfcdii~~E~~~~~riV~end~~va~~p~~~~~P~e~lIiPKrH~~~~~dl~~~e~~~La~~l~~v~~~l~~~~~~~~ 264 (329)
T cd00608 185 RCLLCDYLKLELESKERIVVENEHFVAVVPFWARWPFEVHILPKRHVSRFTDLTDEEREDLAEILKRLLARYDNLFNCSF 264 (329)
T ss_pred CccHHHHHHhhhhcCCeEEEeCCCEEEEEecCCCCCcEEEEecCCCcCChhHCCHHHHHHHHHHHHHHHHHHHHHhCCCC
Confidence 499999998 755 8999999999999999999999999999999999999999999999998886554444 666 56
Q ss_pred ceEEEEeCCC------CCccceeEEEEecCCC
Q psy14209 76 FHRYGFHWPP------FYSIGHLHLHVIAPVS 101 (119)
Q Consensus 76 ~~~~~~~~~~------~q~v~HlH~Hiip~~~ 101 (119)
+||+++|.+| +|.++|+|+|++||++
T Consensus 265 pyn~~~h~~P~~~~~~~~~~~H~Hihi~Pr~~ 296 (329)
T cd00608 265 PYSMGWHQAPTGGKELENWYYHWHFEIPPRRS 296 (329)
T ss_pred CeEEEEeccCCCCCcCCcceEEEEEEeCCCcC
Confidence 8999999876 3689999999999865
No 14
>cd00468 HIT_like HIT family: HIT (Histidine triad) proteins, named for a motif related to the sequence HxHxH/Qxx (x, a hydrophobic amino acid), are a superfamily of nucleotide hydrolases and transferases, which act on the alpha-phosphate of ribonucleotides. On the basis of sequence, substrate specificity, structure, evolution and mechanism, HIT proteins are classified in the literacture into three major branches: the Hint branch, which consists of adenosine 5' -monophosphoramide hydrolases, the Fhit branch, that consists of diadenosine polyphosphate hydrolases, and the GalT branch consisting of specific nucloside monophosphate transferases. Further sequence analysis reveals several new closely related, yet uncharacterized subgroups.
Probab=99.93 E-value=3.9e-25 Score=136.27 Aligned_cols=83 Identities=28% Similarity=0.183 Sum_probs=72.7
Q ss_pred EEECCcEEEEecCCCCCCeeEEEEecCccCCccCCCHhHHHHHHHHHHHHHHHHH-hcCCCceEEEEeCCC--CCcccee
Q psy14209 16 FVTDNDVVAFPDIKPAAKHHTLVISKQHVLNAKVLTSEHKALVQWLEDLSAITYL-CLMVIFHRYGFHWPP--FYSIGHL 92 (119)
Q Consensus 16 v~e~~~~~a~~~~~p~~~gh~lViPk~H~~~~~~L~~~e~~~l~~~~~~~~~~~~-~~~~~~~~~~~~~~~--~q~v~Hl 92 (119)
+||||.++||.|++|.++||+||+||+|+.++.+|+++++..+..+++...+.++ ..+.++|++.+|.++ ||+++|+
T Consensus 1 ~~e~~~~~a~~~~~p~~~gh~lIipk~H~~~~~~l~~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~n~g~~~g~~v~H~ 80 (86)
T cd00468 1 VPDDEHSFAFVNLKPAAPGHVLVCPKRHVETLPDLDEALLADLVITAQRVAAELEKHGNVPSLTVFVNDGAAAGQSVPHV 80 (86)
T ss_pred CeecCcEEEEECCCCCCCCcEEEeCchhhCChhHCCHHHHHHHHHHHHHHHHHHHHhcCCCceEEEEcCCccCCCcCCEE
Confidence 6899999999999999999999999999999999999998777777664433333 567789999999985 8999999
Q ss_pred EEEEec
Q psy14209 93 HLHVIA 98 (119)
Q Consensus 93 H~Hiip 98 (119)
|+||||
T Consensus 81 H~hiiP 86 (86)
T cd00468 81 HLHVLP 86 (86)
T ss_pred EEEeCC
Confidence 999997
No 15
>PLN02643 ADP-glucose phosphorylase
Probab=99.91 E-value=3.6e-24 Score=161.48 Aligned_cols=99 Identities=13% Similarity=0.090 Sum_probs=85.5
Q ss_pred CCccccccc-CCCceEEEECCcEEEEecCCCCCCeeEEEEecCccCCccCCCHhHHHHHHHHHHH-HHHHHHhcCCCceE
Q psy14209 1 MSFLSKIIF-KPNTWWFVTDNDVVAFPDIKPAAKHHTLVISKQHVLNAKVLTSEHKALVQWLEDL-SAITYLCLMVIFHR 78 (119)
Q Consensus 1 ~c~fc~ii~-e~~~~iv~e~~~~~a~~~~~p~~~gh~lViPk~H~~~~~~L~~~e~~~l~~~~~~-~~~~~~~~~~~~~~ 78 (119)
.|+||+|++ |. +|+||+.|+||+|++|.+|||+||+||+|+.++.+|+++|+..|+.+++. ++++.+.++..+||
T Consensus 199 ~Clfcdii~~E~---iV~en~~f~Af~p~ap~~P~evlIiPKrH~~~~~dl~~~e~~~La~ilk~v~~~l~~~~~~~pyN 275 (336)
T PLN02643 199 KCSLCEVVKKDL---LIDESSHFVSIAPFAATFPFEIWIIPRDHSSNFHEIDDDKAVDLGGLLKLMLQKISKQLNDPPYN 275 (336)
T ss_pred CCcHHHHHhCcc---EEEeCCCEEEEeccccCCCCEEEEEeccccCChhhCCHHHHHHHHHHHHHHHHHHHHhcCCCCce
Confidence 499999999 76 99999999999999999999999999999999999999999999998874 44555566777999
Q ss_pred EEEeCCC----CC--ccceeEEEEecCCCC
Q psy14209 79 YGFHWPP----FY--SIGHLHLHVIAPVSE 102 (119)
Q Consensus 79 ~~~~~~~----~q--~v~HlH~Hiip~~~~ 102 (119)
+++|++| +| ...|+|+||+||...
T Consensus 276 ~~~~~~P~~~~~~~~~~~H~hihi~PRl~~ 305 (336)
T PLN02643 276 YMIQTSPLGVEESNLPYTHWFLQIVPQLSG 305 (336)
T ss_pred eeeecCCCccccCcccceEEEEEEecCcCC
Confidence 9999987 34 445666799998654
No 16
>KOG3379|consensus
Probab=99.90 E-value=2.8e-23 Score=136.21 Aligned_cols=102 Identities=17% Similarity=0.118 Sum_probs=87.1
Q ss_pred CceEEEECCcEEEEecCCCCCCeeEEEEecCccCCccCCCHhHHHHHHHHHHHHHHHHH-hcCCCceEEEEeCCC--CCc
Q psy14209 12 NTWWFVTDNDVVAFPDIKPAAKHHTLVISKQHVLNAKVLTSEHKALVQWLEDLSAITYL-CLMVIFHRYGFHWPP--FYS 88 (119)
Q Consensus 12 ~~~iv~e~~~~~a~~~~~p~~~gh~lViPk~H~~~~~~L~~~e~~~l~~~~~~~~~~~~-~~~~~~~~~~~~~~~--~q~ 88 (119)
+..++|+++..+||.+..|..|||+||+|+|-+.++.||+++|.++|...++.+.+.++ .++....++++..|+ ||+
T Consensus 16 ~~~VFykT~~sfafvNlkPvvpgHVLv~P~R~vpRl~dLt~~E~aDlF~t~~~v~~~lek~~~~ts~ti~iQDG~~AGQT 95 (150)
T KOG3379|consen 16 PDHVFYKTKHSFAFVNLKPVVPGHVLVSPLRVVPRLTDLTAAETADLFTTVQKVQRVLEKHYNATSLTIAIQDGPEAGQT 95 (150)
T ss_pred cceEEEeccceEEEEeccccccceEEEeccccccccccCCcHHHHHHHHHHHHHHHHHHHHhcccceEEEeccccccCcc
Confidence 47899999999999999999999999999999999999999998888887777777777 666778999999986 999
Q ss_pred cceeEEEEecCCCCCCCceeeeecc
Q psy14209 89 IGHLHLHVIAPVSEMSFLSKIIFKP 113 (119)
Q Consensus 89 v~HlH~Hiip~~~~~~~~~~~~~~~ 113 (119)
|+|+|+||+||+.....-+..+|..
T Consensus 96 VpHvHvHIlPR~~gDf~~Nd~IY~~ 120 (150)
T KOG3379|consen 96 VPHVHVHILPRKAGDFGDNDLIYDE 120 (150)
T ss_pred cceeEEEEccccccccccchHHHHH
Confidence 9999999998765433333466654
No 17
>PF02744 GalP_UDP_tr_C: Galactose-1-phosphate uridyl transferase, C-terminal domain; InterPro: IPR005850 Galactose-1-phosphate uridyl transferase catalyses the conversion of UDP-glucose and alpha-D-galactose 1-phosphate to alpha-D-glucose 1-phosphate and UDP-galactose during galactose metabolism. The enzyme is present in prokaryotes and eukaryotes. Defects in GalT in humans is the cause of galactosemia, an inherited disorder of galactose metabolism that leads to jaundice, cataracts and mental retardation. This domain describes the C-terminal of Galactose-1-phosphate uridyl transferase. SCOP reports fold duplication of the C-terminal with the N-terminal domain. Both are involved in Zn and Fe binding; GO: 0008108 UDP-glucose:hexose-1-phosphate uridylyltransferase activity, 0006012 galactose metabolic process; PDB: 1GUP_C 1HXP_A 1HXQ_A 1GUQ_C.
Probab=99.75 E-value=6.4e-18 Score=116.40 Aligned_cols=99 Identities=15% Similarity=0.129 Sum_probs=62.3
Q ss_pred CCccccccc-C--CCceEEEECCcEEEEecCCCCCCeeEEEEecCccCCccCCCHhHHHHHHHHHHHH-HHHHHhcC-CC
Q psy14209 1 MSFLSKIIF-K--PNTWWFVTDNDVVAFPDIKPAAKHHTLVISKQHVLNAKVLTSEHKALVQWLEDLS-AITYLCLM-VI 75 (119)
Q Consensus 1 ~c~fc~ii~-e--~~~~iv~e~~~~~a~~~~~p~~~gh~lViPk~H~~~~~~L~~~e~~~l~~~~~~~-~~~~~~~~-~~ 75 (119)
.|+||++++ | ...|||+++++|+++.|..+++|++++|+||+|+.++.+|+++|...|+.++..+ +++-+.++ ..
T Consensus 14 s~L~~D~~~~E~~~~~Riv~en~~f~a~vP~~a~wP~ev~ilpkrh~~~l~~l~~~E~~dlA~~l~~i~~r~d~lf~~~~ 93 (166)
T PF02744_consen 14 SCLFCDHLQMELAEGERIVYENEHFVAFVPFAARWPFEVWILPKRHVPSLADLTDEERDDLAAILKPILRRYDNLFETSF 93 (166)
T ss_dssp S-HHHHHHHHHHHH-TTEEEE-SSEEEE--TT--STT-EEEEESS--SSGGG--HHHHHHHHHHHHHHHHHHHHHCTS--
T ss_pred CchHHHHHHHhhcCCCEEEEECCceEEEEECcccCCcEEEEecCCChhhHHHhhhHHHhhHHHHHHHHHHHhcccCCCCC
Confidence 599999998 6 4689999999999999999999999999999999999999999999998877743 44333454 46
Q ss_pred ceEEEEeCCCCCc---cceeEEEEecC
Q psy14209 76 FHRYGFHWPPFYS---IGHLHLHVIAP 99 (119)
Q Consensus 76 ~~~~~~~~~~~q~---v~HlH~Hiip~ 99 (119)
+|++|+|+.|.++ -.++|+|+-|+
T Consensus 94 pY~m~ihqaP~~~~~~~~~fH~H~e~~ 120 (166)
T PF02744_consen 94 PYNMGIHQAPVNGEDPEHWFHPHFEPP 120 (166)
T ss_dssp -EEEEEE---SSSS--TT--EEEEE--
T ss_pred CCchhhhcCCCCcccchhhhhcccccc
Confidence 9999999988322 12366666653
No 18
>COG1085 GalT Galactose-1-phosphate uridylyltransferase [Energy production and conversion]
Probab=99.69 E-value=1.4e-16 Score=119.34 Aligned_cols=99 Identities=19% Similarity=0.206 Sum_probs=84.0
Q ss_pred CCccccccc-CC--CceEEEECCcEEEEecCCCCCCeeEEEEecCccCCccCCCHhHHHHHHHHHHHHHHHHH-hcCC-C
Q psy14209 1 MSFLSKIIF-KP--NTWWFVTDNDVVAFPDIKPAAKHHTLVISKQHVLNAKVLTSEHKALVQWLEDLSAITYL-CLMV-I 75 (119)
Q Consensus 1 ~c~fc~ii~-e~--~~~iv~e~~~~~a~~~~~p~~~gh~lViPk~H~~~~~~L~~~e~~~l~~~~~~~~~~~~-~~~~-~ 75 (119)
.|.+|++++ |. .+|+|.|+|.++|++|+.+.+|++++|+||+|+..+.++++++.++|+.+++...+-.. .++. .
T Consensus 186 ~~~~~~~ve~E~~~~~R~v~e~~~~~a~~Pf~a~~pfEv~i~pk~hv~~l~~~sdee~~~lA~ilk~~~~~y~~~~~~~f 265 (338)
T COG1085 186 SCMYCDLVEREKGDGERIVVENDHFLAFVPFWARWPFEVLIYPKEHVSFLTDLSDEELKDLAEILKKLLARYDNLFGNSF 265 (338)
T ss_pred CchHHHHHHHHhccCceEEecCceeEEeccccccCceEEEeccHHHhhhhhhCCHHHHHHHHHHHHHHHHHHhhccCCCC
Confidence 499999999 75 47999999999999999999999999999999999999999998888887665433333 3333 3
Q ss_pred ceEEEEeCCCC---CccceeEEEEecC
Q psy14209 76 FHRYGFHWPPF---YSIGHLHLHVIAP 99 (119)
Q Consensus 76 ~~~~~~~~~~~---q~v~HlH~Hiip~ 99 (119)
.|+|++|..++ +.-.|+|+|++||
T Consensus 266 pY~m~~h~ap~~~~~~~~~~h~~~~p~ 292 (338)
T COG1085 266 PYSMGFHQAPFNEVNEHYHLHAEIYPP 292 (338)
T ss_pred ceeeeeecCCCCcccccceEEEEEccc
Confidence 79999999873 5788999999994
No 19
>KOG2958|consensus
Probab=99.55 E-value=5.8e-15 Score=108.06 Aligned_cols=98 Identities=19% Similarity=0.179 Sum_probs=81.5
Q ss_pred Cccccccc-C--CCceEEEECCcEEEEecCCCCCCeeEEEEecCccCCccCCCHhHHHHHHHHHHH-HHHHHHhcCC-Cc
Q psy14209 2 SFLSKIIF-K--PNTWWFVTDNDVVAFPDIKPAAKHHTLVISKQHVLNAKVLTSEHKALVQWLEDL-SAITYLCLMV-IF 76 (119)
Q Consensus 2 c~fc~ii~-e--~~~~iv~e~~~~~a~~~~~p~~~gh~lViPk~H~~~~~~L~~~e~~~l~~~~~~-~~~~~~~~~~-~~ 76 (119)
|++-+.++ | .+.+||.|+++|+++.|+...+|+++|+|||+|++++.+|++.+..+|+.+++. ..++.+.++. .+
T Consensus 201 ~ll~dy~~~E~l~Kervv~enehfivvvPywA~wPfEtllipk~h~~~~~~l~~~~k~dLasiLK~ll~KydnlfetsfP 280 (354)
T KOG2958|consen 201 CLLMDYVKQEALEKERVVVENEHFIVVVPYWATWPFETLLIPKRHVSRFHELDEVEKVDLASILKLLLIKYDNLFETSFP 280 (354)
T ss_pred chHHHHHHHHHhhhceEEeecCceEEEeehhhcCcceeeeechhhhhhhcccchHHHhhHHHHHHHHHHHHHHhhccCCc
Confidence 66767777 6 468999999999999999999999999999999999999999999999998874 5666655554 68
Q ss_pred eEEEEeCCC-C---C-ccce-eEEEEecC
Q psy14209 77 HRYGFHWPP-F---Y-SIGH-LHLHVIAP 99 (119)
Q Consensus 77 ~~~~~~~~~-~---q-~v~H-lH~Hiip~ 99 (119)
|+||+|.+| | + -..| +|+|..||
T Consensus 281 Ysmg~h~aPl~~t~~e~~n~W~h~hFypp 309 (354)
T KOG2958|consen 281 YSMGIHGAPLGSTEQENYNHWLHMHFYPP 309 (354)
T ss_pred cccccccCCcccccccccchhhhhhcccc
Confidence 999999887 2 1 1223 69999997
No 20
>PF04677 CwfJ_C_1: Protein similar to CwfJ C-terminus 1; InterPro: IPR006768 This group of sequences contain a conserved C-terminal domain which is found in the Schizosaccharomyces pombe (Fission yeast) protein Cwf19 (Q09909 from SWISSPROT) and its homologues. Cwf19 is part of the Cdc5p complex involved in mRNA splicing []. This domain is found in association with IPR006767 from INTERPRO, which is generally C-terminal and adjacent to this domain.
Probab=99.24 E-value=3.8e-10 Score=74.07 Aligned_cols=92 Identities=12% Similarity=0.047 Sum_probs=74.0
Q ss_pred CCccccccc-C-CCceEEEECCcEEEEecCCCCCCeeEEEEecCccCCccCCCHhHHHHHHHHHHHHHHHHHhcCCCc--
Q psy14209 1 MSFLSKIIF-K-PNTWWFVTDNDVVAFPDIKPAAKHHTLVISKQHVLNAKVLTSEHKALVQWLEDLSAITYLCLMVIF-- 76 (119)
Q Consensus 1 ~c~fc~ii~-e-~~~~iv~e~~~~~a~~~~~p~~~gh~lViPk~H~~~~~~L~~~e~~~l~~~~~~~~~~~~~~~~~~-- 76 (119)
.|.||- -+ + ...-||.-++.+++.++..|..+||++|+|-+|..++.+++++.++++....+.++++.+..+.+-
T Consensus 12 ~C~fCl-~n~~~~khliisiG~~~YLalpkg~L~~gH~lIvPi~H~~s~~~~de~~~~Ei~~f~~~L~~mf~~~~~~vvf 90 (121)
T PF04677_consen 12 NCWFCL-SNPNVEKHLIISIGDEVYLALPKGPLVPGHCLIVPIQHVPSLTELDEEVWEEIRNFQKSLRKMFASQGKDVVF 90 (121)
T ss_pred CCCCcc-CCCCccceEEEEEcCcEEEEeCCCCccCCEEEEEecceecccccCCHHHHHHHHHHHHHHHHHHHHcCCCEEE
Confidence 599993 44 4 346789999999999999999999999999999999999999999999988888888877544321
Q ss_pred eEEEEeCCCCCccceeEEEEec
Q psy14209 77 HRYGFHWPPFYSIGHLHLHVIA 98 (119)
Q Consensus 77 ~~~~~~~~~~q~v~HlH~Hiip 98 (119)
|... .....|.|+++||
T Consensus 91 ~E~~-----~~~~~H~~iq~vP 107 (121)
T PF04677_consen 91 FERV-----RKRNPHTHIQCVP 107 (121)
T ss_pred EEEe-----CCCCcEEEEEEEE
Confidence 2222 3456799999998
No 21
>KOG0562|consensus
Probab=99.20 E-value=3.4e-11 Score=81.82 Aligned_cols=88 Identities=28% Similarity=0.388 Sum_probs=72.5
Q ss_pred CCCceEEEEC-CcEEEEecCCCCCCeeEEEEec-CccCCccCCCHhHHHHHHHHHHHHHHHHHhcC----CCceEEEEeC
Q psy14209 10 KPNTWWFVTD-NDVVAFPDIKPAAKHHTLVISK-QHVLNAKVLTSEHKALVQWLEDLSAITYLCLM----VIFHRYGFHW 83 (119)
Q Consensus 10 e~~~~iv~e~-~~~~a~~~~~p~~~gh~lViPk-~H~~~~~~L~~~e~~~l~~~~~~~~~~~~~~~----~~~~~~~~~~ 83 (119)
+.+.+++.|+ |.++++.|.+|.+..|+||+|| .-+.++.++..+++.+|.++-.++..+...+. ...|++|||.
T Consensus 12 ~k~e~V~~es~d~vvvIrD~fPKa~~H~LvLpr~s~i~~l~~~~qe~l~ll~~~h~~~~~~v~~~~~~~~~~~f~vG~Ha 91 (184)
T KOG0562|consen 12 PKPENVYIESPDDVVVIRDKFPKARMHLLVLPRRSSIDSLFSVVQEHLSLLKEDHAVGPCWVDQLTNEALCNYFRVGFHA 91 (184)
T ss_pred CccceeeccCcccEEEEcccCccceeEEEEecccchhHHHHHHHHHHhhHhHHHhhcCchHHHHhcchhhhhheeeeecc
Confidence 3456666666 7999999999999999999995 45788888888888888888877777776443 3578999999
Q ss_pred CCCCccceeEEEEecC
Q psy14209 84 PPFYSIGHLHLHVIAP 99 (119)
Q Consensus 84 ~~~q~v~HlH~Hiip~ 99 (119)
.| |+.++|+|||..
T Consensus 92 vP--SM~~LHLHVISk 105 (184)
T KOG0562|consen 92 VP--SMNNLHLHVISK 105 (184)
T ss_pred Cc--chhheeEEEeec
Confidence 88 999999999974
No 22
>KOG2476|consensus
Probab=98.83 E-value=5.5e-08 Score=75.57 Aligned_cols=94 Identities=16% Similarity=0.124 Sum_probs=73.9
Q ss_pred CCccccccc-CC-CceEEEECCcEEEEecCCCCCCeeEEEEecCccCCccCCCHhHHHHHHHHHHHHHHHHHhcCCCceE
Q psy14209 1 MSFLSKIIF-KP-NTWWFVTDNDVVAFPDIKPAAKHHTLVISKQHVLNAKVLTSEHKALVQWLEDLSAITYLCLMVIFHR 78 (119)
Q Consensus 1 ~c~fc~ii~-e~-~~~iv~e~~~~~a~~~~~p~~~gh~lViPk~H~~~~~~L~~~e~~~l~~~~~~~~~~~~~~~~~~~~ 78 (119)
.|.|| +.+ +. ..-||--++.|++-++..|.+.+|+||+|-.|++++..|+++.++++...-..++++.+..+....
T Consensus 320 ~CwFC-LSnP~vEkHLIVsIG~~~YlAlaKGpLs~~HvlIipi~H~p~~~~ls~ev~~Ei~kykaal~~myk~~g~~~v- 397 (528)
T KOG2476|consen 320 SCWFC-LSNPNVEKHLIVSIGNHFYLALAKGPLSSDHVLIIPIEHIPSLVPLSAEVTQEINKYKAALRKMYKKQGKDAV- 397 (528)
T ss_pred ceEEE-ecCCChhhheEEEecceeEEeecCCCCCCCeEEEEEcccccccccCCHHHHHHHHHHHHHHHHHHHhcCCeEE-
Confidence 59999 555 53 467889999999999999999999999999999999999999988888888888888776554321
Q ss_pred EEEeCCCCCccceeEEEEec
Q psy14209 79 YGFHWPPFYSIGHLHLHVIA 98 (119)
Q Consensus 79 ~~~~~~~~q~v~HlH~Hiip 98 (119)
.+-.... -.-|+|+.+||
T Consensus 398 -vfE~~~~-rs~Hlq~Qvip 415 (528)
T KOG2476|consen 398 -VFERQSY-RSVHLQLQVIP 415 (528)
T ss_pred -EEEeecc-cceeeEEEEEe
Confidence 1111011 23499999998
No 23
>KOG3969|consensus
Probab=98.55 E-value=7.9e-07 Score=65.21 Aligned_cols=87 Identities=22% Similarity=0.286 Sum_probs=68.7
Q ss_pred CCceEEEECC----cEEEEecCC--C--CCCeeEEEEe-cCccCCccCCCHhHHHHHHHHHHHHHHHHH---hcCCCceE
Q psy14209 11 PNTWWFVTDN----DVVAFPDIK--P--AAKHHTLVIS-KQHVLNAKVLTSEHKALVQWLEDLSAITYL---CLMVIFHR 78 (119)
Q Consensus 11 ~~~~iv~e~~----~~~a~~~~~--p--~~~gh~lViP-k~H~~~~~~L~~~e~~~l~~~~~~~~~~~~---~~~~~~~~ 78 (119)
...+||||+. .|+.+.|.. + .-.-+++.|- |+-+.++.||++++++.|..+...++.++. +++.+..+
T Consensus 158 E~driV~ed~d~~nGFillPDlKWdgqtld~LyllaIvhr~dikSiRDL~~~h~~lL~n~r~k~~~~i~~~y~v~~dqlr 237 (310)
T KOG3969|consen 158 EDDRIVYEDPDPENGFILLPDLKWDGQTLDSLYLLAIVHRRDIKSIRDLRPSHLQLLRNIRNKSREAIPQRYGVDPDQLR 237 (310)
T ss_pred cccceEEecCCCcCCeEEccccccCcccccceeEEEEEecCCcchhhhCCHHHHHHHHHHHHHHHHHHHHHhCCCchhEE
Confidence 3478999884 377777763 3 3355666665 455899999999999999999998887776 55677899
Q ss_pred EEEeCCCCCccceeEEEEecC
Q psy14209 79 YGFHWPPFYSIGHLHLHVIAP 99 (119)
Q Consensus 79 ~~~~~~~~q~v~HlH~Hiip~ 99 (119)
|-+|..| |..|+|+||++-
T Consensus 238 mf~HYqP--SyYHlHVHi~ni 256 (310)
T KOG3969|consen 238 MFFHYQP--SYYHLHVHIVNI 256 (310)
T ss_pred EEEEecC--ceEEEEEEEEec
Confidence 9999988 999999999973
No 24
>PLN03103 GDP-L-galactose-hexose-1-phosphate guanyltransferase; Provisional
Probab=98.49 E-value=5.7e-07 Score=69.36 Aligned_cols=73 Identities=16% Similarity=0.192 Sum_probs=51.3
Q ss_pred CCcEEEEecCCCCCCeeEEEEecCccCCccCCCHhHHHHHHHHHHHHHHHHHhcCCCceEEEEeCC-CCCccceeEEEEe
Q psy14209 19 DNDVVAFPDIKPAAKHHTLVISKQHVLNAKVLTSEHKALVQWLEDLSAITYLCLMVIFHRYGFHWP-PFYSIGHLHLHVI 97 (119)
Q Consensus 19 ~~~~~a~~~~~p~~~gh~lViPk~H~~~~~~L~~~e~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~-~~q~v~HlH~Hii 97 (119)
+....++.+..|..+||+|++|+.--.-..-++++ ++..+..++...+..+|++|||.. +..++.|||+|..
T Consensus 168 ~s~~~VlINvsPI~~gH~LlvP~~~~~lPQ~i~~~-------~l~la~~~a~~~~~p~frvgYNSlGA~ASvNHLHFQa~ 240 (403)
T PLN03103 168 NSPNVVAINVSPIEYGHVLLVPRVLDCLPQRIDPD-------SFLLALYMAAEANNPYFRVGYNSLGAFATINHLHFQAY 240 (403)
T ss_pred CCccEEEEeCCCCccCeEEEcCCcccCCCeEecHH-------HHHHHHHHHHhcCCCcEEEEecCCccccCcceeeeeec
Confidence 44457889999999999999987633323335553 223344444444567899999983 4569999999997
Q ss_pred c
Q psy14209 98 A 98 (119)
Q Consensus 98 p 98 (119)
-
T Consensus 241 y 241 (403)
T PLN03103 241 Y 241 (403)
T ss_pred c
Confidence 4
No 25
>KOG2720|consensus
Probab=98.01 E-value=6.6e-06 Score=62.20 Aligned_cols=69 Identities=22% Similarity=0.269 Sum_probs=48.3
Q ss_pred EEEecCCCCCCeeEEEEecCccCCccCCCHhHHHHHHHHHHHHHHHHHhcCCCceEEEEeCC-CCCccceeEEEEec
Q psy14209 23 VAFPDIKPAAKHHTLVISKQHVLNAKVLTSEHKALVQWLEDLSAITYLCLMVIFHRYGFHWP-PFYSIGHLHLHVIA 98 (119)
Q Consensus 23 ~a~~~~~p~~~gh~lViPk~H~~~~~~L~~~e~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~-~~q~v~HlH~Hiip 98 (119)
++..+..|...||+||+|+----...-+|-+. +..+-.++...+.+.|++|+|.. +..+|.|||+|..-
T Consensus 169 vvaIN~sPie~~H~LiiP~V~kc~pQrit~~a-------l~lav~~m~~~dd~~frlgyNSlga~AsVNHLHfha~y 238 (431)
T KOG2720|consen 169 VVAINVSPIEYGHVLIIPRVLKCLPQRITHKA-------LLLAVTMMAEADDPYFRLGYNSLGAFASVNHLHFHAYY 238 (431)
T ss_pred eEEEecCccccCcEEEecchhccCcceeeHHH-------HHHHHHHHHhcCCchhheecccchhhhhhhhhhhhhhh
Confidence 56667789999999999987655444445442 12233333344567799999985 46799999999963
No 26
>KOG2477|consensus
Probab=97.67 E-value=0.0007 Score=53.78 Aligned_cols=96 Identities=13% Similarity=0.039 Sum_probs=68.0
Q ss_pred CCcccccccCCC-ceEEEECCcEEEEecCC-CCCCeeEEEEecCccCCccCCCHhHHHHHHHHHHHHHHHHHhcCCCceE
Q psy14209 1 MSFLSKIIFKPN-TWWFVTDNDVVAFPDIK-PAAKHHTLVISKQHVLNAKVLTSEHKALVQWLEDLSAITYLCLMVIFHR 78 (119)
Q Consensus 1 ~c~fc~ii~e~~-~~iv~e~~~~~a~~~~~-p~~~gh~lViPk~H~~~~~~L~~~e~~~l~~~~~~~~~~~~~~~~~~~~ 78 (119)
.|++|==-...| ..||--+...++.+|.. +...||++|+|-+|..+-..|++..++++...+..+..+....+.+ ..
T Consensus 408 ~C~rCfds~klpkhlviSlg~~tYLsLp~~~gL~~gHciIvptqH~~~t~slDEdvWDEIrnfrKcL~~Mfas~n~d-vi 486 (628)
T KOG2477|consen 408 TCPRCFDSEKLPKHLVISLGHRTYLSLPTQPGLAKGHCIIVPTQHRINTLSLDEDVWDEIRNFRKCLALMFASMNLD-VI 486 (628)
T ss_pred hchhhhcccccccceeEEeccceeEeccccCccccCceEEecccccccccccchHHHHHHHHHHHHHHHHHHhcCCC-eE
Confidence 488993222444 56677777777777765 5889999999999999999999999888888777666666533322 11
Q ss_pred EEEeCCC-CCccceeEEEEec
Q psy14209 79 YGFHWPP-FYSIGHLHLHVIA 98 (119)
Q Consensus 79 ~~~~~~~-~q~v~HlH~Hiip 98 (119)
-+-+.+ -+.-+|+-+|-||
T Consensus 487 -FyE~a~~l~rrpH~~IeCIP 506 (628)
T KOG2477|consen 487 -FYENAPSLQRRPHTAIECIP 506 (628)
T ss_pred -EEeccCccccCCceeEEEee
Confidence 122222 3568999999998
No 27
>TIGR00672 cdh CDP-diacylglycerol pyrophosphatase, bacterial type. Alternate names for this enzyme include CDP-diglyceride hydrolase and CDP-diacylglycerol hydrolase.
Probab=97.45 E-value=0.00069 Score=49.45 Aligned_cols=81 Identities=12% Similarity=0.072 Sum_probs=56.2
Q ss_pred ceEEEECCcEEEEecCCCCCCeeEEEEecCccCCccC---CCHhHHHHHHHHHHHHHHHHH-----hcCCCceEEEEeCC
Q psy14209 13 TWWFVTDNDVVAFPDIKPAAKHHTLVISKQHVLNAKV---LTSEHKALVQWLEDLSAITYL-----CLMVIFHRYGFHWP 84 (119)
Q Consensus 13 ~~iv~e~~~~~a~~~~~p~~~gh~lViPk~H~~~~~~---L~~~e~~~l~~~~~~~~~~~~-----~~~~~~~~~~~~~~ 84 (119)
-..|-.+..++++.|. ..|.|.|++|...++.+++ +++... ........++..+. .+......+.+|..
T Consensus 54 C~~Vd~~~gyvvlKD~--~Gp~qyLLmPt~rIsGIEsP~Ll~~~tp-nyf~~AW~aR~~v~~~~g~pipd~~lsLaINS~ 130 (250)
T TIGR00672 54 CAEVKPNAGYVVLKDL--NGPLQYLLMPTYRINGTESPLLLDPSTP-NFFWLAWQARDFMSKKYGQPIPDRAVSLAINSR 130 (250)
T ss_pred cceEcCCCCeEEEeCC--CCCceeEEeeccccCCccChhhcCCCCc-cHHHHHHHHhHHHHHhcCCCCChhheeEEecCC
Confidence 3445567888888887 6678999999999887764 333322 23333344544444 33445678899988
Q ss_pred CCCccceeEEEE
Q psy14209 85 PFYSIGHLHLHV 96 (119)
Q Consensus 85 ~~q~v~HlH~Hi 96 (119)
.|.|..|||+||
T Consensus 131 ~gRSQnQLHIHI 142 (250)
T TIGR00672 131 TGRSQNHFHIHI 142 (250)
T ss_pred CCcccccceeeH
Confidence 899999999998
No 28
>PRK05471 CDP-diacylglycerol pyrophosphatase; Provisional
Probab=97.40 E-value=0.00095 Score=48.75 Aligned_cols=83 Identities=10% Similarity=-0.075 Sum_probs=55.5
Q ss_pred CceEEEECCcEEEEecCCCCCCeeEEEEecCccCCccC---CCHhHHHHHHHHHHHHHHHHH-----hcCCCceEEEEeC
Q psy14209 12 NTWWFVTDNDVVAFPDIKPAAKHHTLVISKQHVLNAKV---LTSEHKALVQWLEDLSAITYL-----CLMVIFHRYGFHW 83 (119)
Q Consensus 12 ~~~iv~e~~~~~a~~~~~p~~~gh~lViPk~H~~~~~~---L~~~e~~~l~~~~~~~~~~~~-----~~~~~~~~~~~~~ 83 (119)
|-..|-....++++.| +..|.|.|++|...++.+++ +++... ........++..+. .+......+.+|.
T Consensus 54 PC~~Vd~~~gyvvlKD--~~Gp~qyLLiPt~rIsGIEsP~Ll~~~tp-nyf~~AW~aR~~v~~~~g~pipd~~lsLaINS 130 (252)
T PRK05471 54 PCAEVDPQAGYVLLKD--RNGPLQYLLMPTYRISGIESPLLLEPSTP-NYFALAWQARDFMSKKYGKPIPDSAVSLAINS 130 (252)
T ss_pred CCeeEccCCCeEEEec--CCCCcceEEeecccccCccCccccCCCCc-cHHHHHHHHhHHHHHhhCCCCChhheEEEecC
Confidence 3445556778888875 45677999999999877765 333322 22223333444443 4445667889998
Q ss_pred CCCCccceeEEEEe
Q psy14209 84 PPFYSIGHLHLHVI 97 (119)
Q Consensus 84 ~~~q~v~HlH~Hii 97 (119)
..|.|.++||+||=
T Consensus 131 ~~gRSQnQLHIHIs 144 (252)
T PRK05471 131 RYGRTQDQLHIHIS 144 (252)
T ss_pred CCCccccceeeehh
Confidence 88899999999993
No 29
>PF02611 CDH: CDP-diacylglycerol pyrophosphatase; InterPro: IPR003763 The CDP-diacylglycerol pyrophosphatases 3.6.1.26 from EC play a role in the regulation of phospholipid metabolism by inositol, as well as regulating the cellular levels of phosphatidylinositol [].; GO: 0008715 CDP-diacylglycerol diphosphatase activity, 0008654 phospholipid biosynthetic process, 0016020 membrane; PDB: 2POF_A.
Probab=97.32 E-value=0.00092 Score=48.15 Aligned_cols=83 Identities=11% Similarity=-0.060 Sum_probs=43.3
Q ss_pred CceEEEECCcEEEEecCCCCCCeeEEEEecCccCCccC---CCHhHHHHHHHHHHHH-----HHHHHhcCCCceEEEEeC
Q psy14209 12 NTWWFVTDNDVVAFPDIKPAAKHHTLVISKQHVLNAKV---LTSEHKALVQWLEDLS-----AITYLCLMVIFHRYGFHW 83 (119)
Q Consensus 12 ~~~iv~e~~~~~a~~~~~p~~~gh~lViPk~H~~~~~~---L~~~e~~~l~~~~~~~-----~~~~~~~~~~~~~~~~~~ 83 (119)
|-..|-.+..++++.| +..+.|.|++|...++.+++ +++.....++. ...+ +++-+.+....+.+++|.
T Consensus 25 pC~~Vd~~~gyvvlKd--~~G~~qyLL~Pt~rIsGIEsP~Ll~~~~pNyf~~-AW~aR~~v~~~~g~~lpd~~lsLaINS 101 (222)
T PF02611_consen 25 PCAQVDLQQGYVVLKD--RNGPLQYLLMPTDRISGIESPALLEPRTPNYFAD-AWQARGFVSQKLGKPLPDDDLSLAINS 101 (222)
T ss_dssp TSSEEETTTTEEEEE---SSSSS-EEEEESS---STT-GGGGSTTS--HHHH-HHHTTHHHHHHHTS---GGGEEEEEB-
T ss_pred CCeEEcCCCCEEEEeC--CCCCccEEEeeccccCCccChhhcCCCCccHHHH-HHHhhHHHHHhcCCCCCccceEEEecC
Confidence 3345556777888886 45578999999999877764 34433323332 2222 333235556788999998
Q ss_pred CCCCccceeEEEEe
Q psy14209 84 PPFYSIGHLHLHVI 97 (119)
Q Consensus 84 ~~~q~v~HlH~Hii 97 (119)
..|.|..+||+||=
T Consensus 102 ~~gRsQdQLHIHis 115 (222)
T PF02611_consen 102 QYGRSQDQLHIHIS 115 (222)
T ss_dssp GGG-S--S--EEEE
T ss_pred ccCccccceEeEhh
Confidence 87889999999993
No 30
>COG5075 Uncharacterized conserved protein [Function unknown]
Probab=97.27 E-value=0.00063 Score=49.48 Aligned_cols=86 Identities=20% Similarity=0.198 Sum_probs=58.0
Q ss_pred CCceEEEECCc----EEEEecCC--C--CCCeeEEEEec-CccCCccCCCHhHHHHHHHHHHHHHHHHH---hcCCCceE
Q psy14209 11 PNTWWFVTDND----VVAFPDIK--P--AAKHHTLVISK-QHVLNAKVLTSEHKALVQWLEDLSAITYL---CLMVIFHR 78 (119)
Q Consensus 11 ~~~~iv~e~~~----~~a~~~~~--p--~~~gh~lViPk-~H~~~~~~L~~~e~~~l~~~~~~~~~~~~---~~~~~~~~ 78 (119)
..++|+|||+. |+++.|.. + ...-|+++|-+ .-+.++.||...++..+..+-........ +++.+..+
T Consensus 153 e~erivyed~~~~ngfiiiPD~KWd~qt~dsL~l~aIv~~~diktiRDlr~~~i~~l~rl~~kiltevp~~f~vd~n~l~ 232 (305)
T COG5075 153 ENERIVYEDESVINGFIIIPDMKWDGQTVDSLYLVAIVYRTDIKTIRDLRYYHILWLIRLNNKILTEVPYQFGVDPNELR 232 (305)
T ss_pred ccceeEecCcccccCceeccccccCccceeeeeEEEEEecCCchhhhhCchhhhhHHHhhcccceEecchhcCcChhHeE
Confidence 45799999976 55566653 3 33456666554 46899999999987776664332211111 34456678
Q ss_pred EEEeCCCCCccceeEEEEec
Q psy14209 79 YGFHWPPFYSIGHLHLHVIA 98 (119)
Q Consensus 79 ~~~~~~~~q~v~HlH~Hiip 98 (119)
+-+|..| |..|+|+||+-
T Consensus 233 mfvHY~P--sYyhlHvHI~n 250 (305)
T COG5075 233 MFVHYQP--SYYHLHVHIVN 250 (305)
T ss_pred EEEEecc--ceEEEEEEEEe
Confidence 8888877 99999999984
No 31
>cd00608 GalT Galactose-1-phosphate uridyl transferase (GalT): This enzyme plays a key role in galactose metabolism by catalysing the transfer of a uridine 5'-phosphoryl group from UDP-galactose 1-phosphate. The structure of E.coli GalT reveals that the enzyme contains two identical subunits. It also demonstrates that the active site is formed by amino acid residues from both subunits of the dimer.
Probab=96.90 E-value=0.0085 Score=45.46 Aligned_cols=61 Identities=20% Similarity=0.004 Sum_probs=41.2
Q ss_pred eEEEEecCccCCccCCCHhHHHHHHHHHHHHHHHHHhcC---CCceEEEE-eCCC--CCccceeEEEEec
Q psy14209 35 HTLVISKQHVLNAKVLTSEHKALVQWLEDLSAITYLCLM---VIFHRYGF-HWPP--FYSIGHLHLHVIA 98 (119)
Q Consensus 35 h~lViPk~H~~~~~~L~~~e~~~l~~~~~~~~~~~~~~~---~~~~~~~~-~~~~--~q~v~HlH~Hiip 98 (119)
.++|..-+|..++.+++.+++..+ +.+.++..+.+. .-.|...| |.|+ |.|..|-|..|+.
T Consensus 95 eVii~sp~H~~~l~~~~~~~i~~v---~~~~~~r~~~l~~~~~~~yv~if~N~G~~aGaSl~HpH~Qi~a 161 (329)
T cd00608 95 EVICFSPDHNLTLAEMSVAEIREV---VEAWAERTRELGKNPRIKYVQIFENKGAEMGASLPHPHGQIWA 161 (329)
T ss_pred EEEEECCcccCChhhCCHHHHHHH---HHHHHHHHHHHhcCCCCcEEEEEeecCcccccCCCCCCeeeee
Confidence 677888999999999999985433 333333333222 23455555 4454 8999999999984
No 32
>COG2134 Cdh CDP-diacylglycerol pyrophosphatase [Lipid metabolism]
Probab=96.73 E-value=0.0098 Score=42.47 Aligned_cols=83 Identities=8% Similarity=-0.044 Sum_probs=53.6
Q ss_pred CceEEEECCcEEEEecCCCCCCeeEEEEecCccCCccC---CCHhHHHHHHHHHHHHHHHHH-----hcCCCceEEEEeC
Q psy14209 12 NTWWFVTDNDVVAFPDIKPAAKHHTLVISKQHVLNAKV---LTSEHKALVQWLEDLSAITYL-----CLMVIFHRYGFHW 83 (119)
Q Consensus 12 ~~~iv~e~~~~~a~~~~~p~~~gh~lViPk~H~~~~~~---L~~~e~~~l~~~~~~~~~~~~-----~~~~~~~~~~~~~ 83 (119)
|-.-|-+...++++.|.+- |...|++|..+++.+++ +++.. +.+-.....++.... .+...+..+.+|.
T Consensus 54 PCaeV~~~AG~av~Kd~~g--PlQyLLmPt~rItGiEsP~L~e~at-pNyf~~AWqAR~fms~kyg~~ipd~dvsLaINs 130 (252)
T COG2134 54 PCAEVKPQAGYAVLKDRNG--PLQYLLMPTARITGIESPLLLEPAT-PNYFYLAWQARDFMSKKYGNPIPDSDVSLAINS 130 (252)
T ss_pred CceeecCCCceEEEeccCC--CceeEeeeeecccCCcChhhcCCCC-ccHHHHHHHHHHHHHHHhCCCCCccceEEEecC
Confidence 3345666777777777653 44669999999887764 22222 223333445555444 3345577888887
Q ss_pred CCCCccceeEEEEe
Q psy14209 84 PPFYSIGHLHLHVI 97 (119)
Q Consensus 84 ~~~q~v~HlH~Hii 97 (119)
.-|.+.+|+|+||=
T Consensus 131 ~~gRtQdqlHIHIS 144 (252)
T COG2134 131 KNGRTQDQLHIHIS 144 (252)
T ss_pred ccCccccceEEEEE
Confidence 77889999999993
No 33
>COG4360 APA2 ATP adenylyltransferase (5',5'''-P-1,P-4-tetraphosphate phosphorylase II) [Nucleotide transport and metabolism]
Probab=96.11 E-value=0.012 Score=43.03 Aligned_cols=67 Identities=16% Similarity=0.105 Sum_probs=45.9
Q ss_pred EEEEecCCCCCCeeEEEEecCccCCccCCCHhHHHHHHHHHHHHHHHHHhcCCCceEEEEeCCC--CCccceeEEEEec
Q psy14209 22 VVAFPDIKPAAKHHTLVISKQHVLNAKVLTSEHKALVQWLEDLSAITYLCLMVIFHRYGFHWPP--FYSIGHLHLHVIA 98 (119)
Q Consensus 22 ~~a~~~~~p~~~gh~lViPk~H~~~~~~L~~~e~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~--~q~v~HlH~Hiip 98 (119)
...+.+.+|..+.|+|||.|+--..=+.||..+ +..+ -+++.+++ | -+-+|.|| |.|.+|=|+.++|
T Consensus 94 h~~llNKF~VVdeHlLiVTrefedQ~s~LTl~D---f~ta----~~vL~~ld--g-lvFYNsGp~aGaSq~HkHLQi~p 162 (298)
T COG4360 94 HKLLLNKFPVVDEHLLIVTREFEDQESALTLAD---FTTA----YAVLCGLD--G-LVFYNSGPIAGASQDHKHLQIVP 162 (298)
T ss_pred HhhhhhcCCcccceeEEeehhhhhccccCCHHH---HHHH----HHHHhccc--c-eEEecCCCCcCcCCCccceeEee
Confidence 455678999999999999998554445577766 3332 22333332 3 23456665 8899999999997
No 34
>PLN02643 ADP-glucose phosphorylase
Probab=95.78 E-value=0.14 Score=39.08 Aligned_cols=62 Identities=19% Similarity=0.108 Sum_probs=41.2
Q ss_pred eeEEEEecCccCCccCCCHhHHHHHHHHHHHHHHHHHhcC---CCceEEEE-eCCC--CCccceeEEEEec
Q psy14209 34 HHTLVISKQHVLNAKVLTSEHKALVQWLEDLSAITYLCLM---VIFHRYGF-HWPP--FYSIGHLHLHVIA 98 (119)
Q Consensus 34 gh~lViPk~H~~~~~~L~~~e~~~l~~~~~~~~~~~~~~~---~~~~~~~~-~~~~--~q~v~HlH~Hiip 98 (119)
..++|..-+|..++.+|+.+++..+ +.+-++....+. .-.|...| |.|+ |.|.+|-|-.|+.
T Consensus 108 ~eVii~sp~H~~~l~~~~~~~i~~v---~~~~~~r~~~l~~~~~i~yv~iF~N~G~~aGaSl~HPH~Qi~a 175 (336)
T PLN02643 108 HDVVIETPVHSVQLSDLPARHIGEV---LKAYKKRINQLQSDSRFKYVQVFKNHGASAGASMSHSHSQIIA 175 (336)
T ss_pred EEEEEeCCccCCChHHCCHHHHHHH---HHHHHHHHHHHhcCCCceEEEEEeecCccCCcCCCCCceeeEe
Confidence 4577777889999999999985443 333333333232 22455555 4454 8999999999984
No 35
>COG1085 GalT Galactose-1-phosphate uridylyltransferase [Energy production and conversion]
Probab=95.11 E-value=0.21 Score=38.22 Aligned_cols=62 Identities=19% Similarity=-0.072 Sum_probs=38.9
Q ss_pred EEEEecCccCCccCCCHhHHHHHHHHHH-HHHHHHHhcCCCceE-EEEeCCC--CCccceeEEEEec
Q psy14209 36 TLVISKQHVLNAKVLTSEHKALVQWLED-LSAITYLCLMVIFHR-YGFHWPP--FYSIGHLHLHVIA 98 (119)
Q Consensus 36 ~lViPk~H~~~~~~L~~~e~~~l~~~~~-~~~~~~~~~~~~~~~-~~~~~~~--~q~v~HlH~Hiip 98 (119)
++|..-.|-.++.+|+.++...+-.+.+ ..+++.+.- ...|. +..|.|. |.|.+|.|..|+.
T Consensus 97 VIvesp~H~~~l~~~~~~~~~~vv~~~~e~~~~L~~~~-~~~yV~iF~N~Gk~~G~S~~HPH~Qi~a 162 (338)
T COG1085 97 VIVESPDHSKTLPELPVEEIEEVVKLWQERVRELYERE-KYKYVQIFENKGKAAGASLPHPHGQIVA 162 (338)
T ss_pred EEEECCcccCccccCCHHHHHHHHHHHHHHHHHHhhcc-CcceEEeeeccCcccCccCCCCCcceee
Confidence 4555678999999999998544443322 233333321 12343 4445554 8999999999974
No 36
>TIGR00209 galT_1 galactose-1-phosphate uridylyltransferase, family 1. This enzyme is involved in glucose and galactose interconversion. This model describes one of two extremely distantly related branches of the model pfam01087 from PFAM.
Probab=94.69 E-value=0.56 Score=36.06 Aligned_cols=62 Identities=15% Similarity=-0.082 Sum_probs=41.8
Q ss_pred eeEEEEecCccCCccCCCHhHHHHHHHHHHHHHHHHHhc-CCCceEEEEeC-CC--CCccceeEEEEec
Q psy14209 34 HHTLVISKQHVLNAKVLTSEHKALVQWLEDLSAITYLCL-MVIFHRYGFHW-PP--FYSIGHLHLHVIA 98 (119)
Q Consensus 34 gh~lViPk~H~~~~~~L~~~e~~~l~~~~~~~~~~~~~~-~~~~~~~~~~~-~~--~q~v~HlH~Hiip 98 (119)
..++|-.-+|-.++.+|+.+++..+-.+ -++-...+ ..-.|...|-| |. |.|.+|-|-.|+.
T Consensus 106 ~eVii~sp~H~~~l~~m~~~~i~~v~~~---~~~r~~~l~~~i~yv~iF~N~G~~~GaSl~HPH~Qi~a 171 (347)
T TIGR00209 106 SRVICFSPDHSKTLPELSVAALTEIVKT---WQEQTAELGKTYPWVQIFENKGAAMGCSNPHPHGQIWA 171 (347)
T ss_pred EEEEEeCCCccCChhHCCHHHHHHHHHH---HHHHHHHHHhCCcEEEEEeecCcccCcCCCCCceeeee
Confidence 5677888899999999999996544333 22222222 22346666644 53 8999999999984
No 37
>PRK11720 galactose-1-phosphate uridylyltransferase; Provisional
Probab=94.64 E-value=0.38 Score=36.93 Aligned_cols=62 Identities=16% Similarity=-0.110 Sum_probs=42.1
Q ss_pred eeEEEEecCccCCccCCCHhHHHHHHHHHHHHHHHHHhcCC-CceEEEEeC-CC--CCccceeEEEEec
Q psy14209 34 HHTLVISKQHVLNAKVLTSEHKALVQWLEDLSAITYLCLMV-IFHRYGFHW-PP--FYSIGHLHLHVIA 98 (119)
Q Consensus 34 gh~lViPk~H~~~~~~L~~~e~~~l~~~~~~~~~~~~~~~~-~~~~~~~~~-~~--~q~v~HlH~Hiip 98 (119)
..++|..-+|..++.+|+.+++..+-. +-++..+.+.. -.|...|-| |+ |.|..|-|-.|+.
T Consensus 106 ~eViv~sp~H~~~l~~~~~~~i~~v~~---~~~~r~~~l~~~i~yv~iF~N~G~~~GaSl~HPH~Qi~a 171 (346)
T PRK11720 106 SRVICFSPDHSKTLPELSVAALREVVD---TWQEQTAELGKTYPWVQVFENKGAAMGCSNPHPHGQIWA 171 (346)
T ss_pred EEEEEECCCcCCChhHCCHHHHHHHHH---HHHHHHHHHHhCCcEEEEEeecCcccCcCCCCCceeeee
Confidence 567888899999999999998544433 33333332222 455555544 54 8999999999984
No 38
>PF01087 GalP_UDP_transf: Galactose-1-phosphate uridyl transferase, N-terminal domain; InterPro: IPR005849 Galactose-1-phosphate uridyl transferase catalyses the conversion of UDP-glucose and alpha-D-galactose 1-phosphate to alpha-D-glucose 1-phosphate and UDP-galactose during galactose metabolism. The enzyme is present in prokaryotes and eukaryotes. Defects in GalT in humans is the cause of galactosemia, an inherited disorder of galactose metabolism that leads to jaundice, cataracts and mental retardation. This domain describes the C-terminal of Galactose-1-phosphate uridyl transferase. SCOP reports fold duplication of the C-terminal with the N-terminal domain. Both are involved in Zn and Fe binding; GO: 0008108 UDP-glucose:hexose-1-phosphate uridylyltransferase activity, 0006012 galactose metabolic process; PDB: 1GUP_C 1HXP_A 1HXQ_A 1GUQ_C 1Z84_B 1ZWJ_A 2Q4L_A 2H39_B 2Q4H_A.
Probab=88.29 E-value=2.7 Score=29.22 Aligned_cols=64 Identities=14% Similarity=-0.078 Sum_probs=35.4
Q ss_pred eEEEEecCccCCccCCCHhHHHHHHHHHHHHHHHHHhcCCCceEEEEeC-CC--CCccceeEEEEec
Q psy14209 35 HTLVISKQHVLNAKVLTSEHKALVQWLEDLSAITYLCLMVIFHRYGFHW-PP--FYSIGHLHLHVIA 98 (119)
Q Consensus 35 h~lViPk~H~~~~~~L~~~e~~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~--~q~v~HlH~Hiip 98 (119)
.++|-.-+|-.++.+|+.++...+..+.....+-+..-+.-.|.+.|-| |. |.+..|-|-.|+.
T Consensus 112 EViIe~p~h~~~~~~~~~~~~~~i~~a~~~r~~~l~~~~~~~yv~~FeN~G~~~GaSl~HpHsQi~a 178 (183)
T PF01087_consen 112 EVIIESPKHERTLADMSVKEIKEILKAWRDRYRELSSDKYIKYVLIFENEGYEAGASLPHPHSQIIA 178 (183)
T ss_dssp EEEES-SSTT--GGGS-HHHHHHHHHHHHHHHHHHCT-TT-SEEEEEEEESGGGT-SSSSSEEEEEE
T ss_pred EEEEeCCCCCCChhhCCHHHHHHHHHHHHHHHHHHhccCCcceEEEEEecCCcCCCCCCCCceEEec
Confidence 6677778888999999999965444432211111112223356666644 53 7899999999984
No 39
>PF01076 Mob_Pre: Plasmid recombination enzyme; InterPro: IPR001668 With some plasmids, recombination can occur in a site specific manner that is independent of RecA. In such cases, the recombination event requires another protein called Pre. Pre is a plasmid recombination enzyme. This protein is also known as Mob (conjugative mobilisation) [].; GO: 0003677 DNA binding, 0006310 DNA recombination, 0005727 extrachromosomal circular DNA
Probab=79.20 E-value=8 Score=27.14 Aligned_cols=48 Identities=15% Similarity=-0.033 Sum_probs=29.0
Q ss_pred CCCHhHHHHHHHHHHHHHHHHH-hcC-CCceEEEEeCCCCCccceeEEEEecCCC
Q psy14209 49 VLTSEHKALVQWLEDLSAITYL-CLM-VIFHRYGFHWPPFYSIGHLHLHVIAPVS 101 (119)
Q Consensus 49 ~L~~~e~~~l~~~~~~~~~~~~-~~~-~~~~~~~~~~~~~q~v~HlH~Hiip~~~ 101 (119)
++++++ .........+.++ .++ ..-+++.+|.. .+.||+|+-++|-..
T Consensus 94 ~~~~e~---~~~~~~~~~~~~~~r~g~~ni~~a~vH~D--E~tPH~H~~~vP~~~ 143 (196)
T PF01076_consen 94 DLDPEQ---QKRWFEDSLEWLQERYGNENIVSAVVHLD--ETTPHMHFDVVPIDE 143 (196)
T ss_pred chhhHH---HHHHHHHHHHHHHHHCCchhEEEEEEECC--CCCcceEEEEeeccc
Confidence 455555 3333333333333 565 45567777764 478999999998533
No 40
>PF03432 Relaxase: Relaxase/Mobilisation nuclease domain ; InterPro: IPR005094 Relaxases/mobilisation proteins are required for the horizontal transfer of genetic information contained on plasmids that occurs during bacterial conjugation. The relaxase, in conjunction with several auxiliary proteins, forms the relaxation complex or relaxosome. Relaxases nick duplex DNA in a specific manner by catalysing trans-esterification [].
Probab=78.63 E-value=4.8 Score=28.57 Aligned_cols=37 Identities=11% Similarity=-0.026 Sum_probs=24.5
Q ss_pred HHHHHHHHHHhcCC--CceEEEEeCCCCCccceeEEEEecCCC
Q psy14209 61 LEDLSAITYLCLMV--IFHRYGFHWPPFYSIGHLHLHVIAPVS 101 (119)
Q Consensus 61 ~~~~~~~~~~~~~~--~~~~~~~~~~~~q~v~HlH~Hiip~~~ 101 (119)
+...+..+++.++. ..|.++.|.. -.|.|+||+-.+-
T Consensus 74 ~~~~~~~~~~~~~~~~~~~v~~~H~D----~~h~H~Hivin~v 112 (242)
T PF03432_consen 74 AHEIAREFAEEMGPGNHQYVVVVHTD----TDHPHVHIVINRV 112 (242)
T ss_pred HHHHHHHHHHHcCCCCcceEEEECCC----cCeeeeeEEEeec
Confidence 44556677775544 5677777764 4599999986433
No 41
>PF14317 YcxB: YcxB-like protein
Probab=77.17 E-value=7.3 Score=21.13 Aligned_cols=37 Identities=19% Similarity=0.206 Sum_probs=22.4
Q ss_pred EEEECCcEEEEecCCCCCCeeEEEEecCccCCccCCCHhHHHHHHHH
Q psy14209 15 WFVTDNDVVAFPDIKPAAKHHTLVISKQHVLNAKVLTSEHKALVQWL 61 (119)
Q Consensus 15 iv~e~~~~~a~~~~~p~~~gh~lViPk~H~~~~~~L~~~e~~~l~~~ 61 (119)
-+.|+++++.+.- .++..+++||+-. ++++.+.+..+
T Consensus 24 ~v~e~~~~~~l~~----~~~~~~~iPk~~f------~~~e~~~f~~~ 60 (62)
T PF14317_consen 24 KVVETKDYFYLYL----GKNQAFIIPKRAF------SEEEKEEFREF 60 (62)
T ss_pred EEEEeCCEEEEEE----CCCeEEEEEHHHC------CHhHHHHHHHH
Confidence 4667777666532 3458899999833 34555555543
No 42
>PRK13878 conjugal transfer relaxase TraI; Provisional
Probab=72.19 E-value=4.9 Score=34.10 Aligned_cols=33 Identities=12% Similarity=0.092 Sum_probs=23.3
Q ss_pred HHHHHHHHh--cCCCceEEEEeCCCCCccceeEEEEecC
Q psy14209 63 DLSAITYLC--LMVIFHRYGFHWPPFYSIGHLHLHVIAP 99 (119)
Q Consensus 63 ~~~~~~~~~--~~~~~~~~~~~~~~~q~v~HlH~Hiip~ 99 (119)
..+.++++. ++...|.++.|. ...|+|+||+-.
T Consensus 88 ~I~~~~~~~LG~~~hQ~Vva~H~----DTdh~HiHIviN 122 (746)
T PRK13878 88 AIEERICAGLGYGEHQRVSAVHH----DTDNLHIHIAIN 122 (746)
T ss_pred HHHHHHHHHhCCCCceEEEEEEC----CCCCceeEEEEe
Confidence 345566663 456678888886 457999999963
No 43
>PRK13863 type IV secretion system T-DNA border endonuclease VirD2; Provisional
Probab=65.63 E-value=22 Score=28.24 Aligned_cols=34 Identities=24% Similarity=0.047 Sum_probs=21.6
Q ss_pred HHHHHHHHH-hcCCC------ceEEEEeCCCCCccceeEEEEecC
Q psy14209 62 EDLSAITYL-CLMVI------FHRYGFHWPPFYSIGHLHLHVIAP 99 (119)
Q Consensus 62 ~~~~~~~~~-~~~~~------~~~~~~~~~~~q~v~HlH~Hiip~ 99 (119)
...+++.++ .++.. .|.+++|.. -.|-|+||+-.
T Consensus 99 rdAARefA~E~FgsG~~G~~~dYV~AlH~D----~dHPHVHLvVn 139 (446)
T PRK13863 99 YAASREWAAEMFGSGAGGGRYNYLTAFHID----RDHPHLHVVVN 139 (446)
T ss_pred HHHHHHHHHHHhCCCCCCCceeEEEEEecC----CCCCeEEEEEE
Confidence 334555554 34322 688888873 36899999765
No 44
>TIGR03793 TOMM_pelo TOMM propeptide domain. This model represents a domain that is conserved among a large number of putative thiazole/oxazole-modified microcins (TOMM). Oddly, most of this seqence region appears homologous to nitrile hydratase subunits. This family is expanded especially in Pelotomaculum thermopropionicum SI.
Probab=55.18 E-value=18 Score=21.72 Aligned_cols=22 Identities=23% Similarity=0.138 Sum_probs=17.2
Q ss_pred CeeEEEEecCccCCccCCCHhHHHH
Q psy14209 33 KHHTLVISKQHVLNAKVLTSEHKAL 57 (119)
Q Consensus 33 ~gh~lViPk~H~~~~~~L~~~e~~~ 57 (119)
.-|.+|+|.+-.. +||+++++.
T Consensus 52 ~~~~lVlP~~P~~---~lse~~L~~ 73 (77)
T TIGR03793 52 TVLYLVLPVNPDI---ELTDEQLDA 73 (77)
T ss_pred CeEEEEecCCCCC---CCCHHHHHH
Confidence 3488999999877 889998544
No 45
>smart00537 DCX Domain in the Doublecortin (DCX) gene product. Tandemly-repeated domain in doublin, the Doublecortin gene product. Proposed to bind tubulin. Doublecortin (DCX) is mutated in human X-linked neuronal migration defects.
Probab=52.27 E-value=14 Score=22.66 Aligned_cols=29 Identities=10% Similarity=0.107 Sum_probs=25.1
Q ss_pred cEEEEecCCCCCCeeEEEEecCccCCccC
Q psy14209 21 DVVAFPDIKPAAKHHTLVISKQHVLNAKV 49 (119)
Q Consensus 21 ~~~a~~~~~p~~~gh~lViPk~H~~~~~~ 49 (119)
.++++.+-.+..+|..++++++.+.++..
T Consensus 7 ~i~~~rNGD~~~~g~~~~v~~~~~~s~d~ 35 (89)
T smart00537 7 RIRFYRNGDRFFKGVRLVVNRKRFKSFEA 35 (89)
T ss_pred EEEEEeCCCCCCCCEEEEEChhhcCCHHH
Confidence 56788889999999999999999988753
No 46
>PF01446 Rep_1: Replication protein; InterPro: IPR000989 Replication proteins (rep) are involved in plasmid replication. The Rep protein binds to the plasmid DNA and nicks it at the double strand origin (dso) of replication. The 3'-hydroxyl end created is extended by the host DNA replicase, and the 5' end is displaced during synthesis. At the end of one replication round, Rep introduces a second single stranded break at the dso and ligates the ssDNA extremities generating one double-stranded plasmid and one circular ssDNA form. Complementary strand synthesis of the circular ssDNA is usually initiated at the single-stranded origin by the host RNA polymerase [].; GO: 0003677 DNA binding, 0006260 DNA replication, 0005727 extrachromosomal circular DNA
Probab=49.13 E-value=85 Score=22.79 Aligned_cols=41 Identities=12% Similarity=-0.002 Sum_probs=20.6
Q ss_pred HHHHHHHHHHHHHH--hc--CCCceEEEEeC--CCCCccceeEEEEe
Q psy14209 57 LVQWLEDLSAITYL--CL--MVIFHRYGFHW--PPFYSIGHLHLHVI 97 (119)
Q Consensus 57 ~l~~~~~~~~~~~~--~~--~~~~~~~~~~~--~~~q~v~HlH~Hii 97 (119)
.+..|...-+++.+ .. +..||.-.+-. +......|.|+||+
T Consensus 41 ~l~~m~~a~~rl~~~k~~~~~~~G~ir~~EvT~~~~~g~~HPH~Hvl 87 (233)
T PF01446_consen 41 TLDHMNKAFRRLFKRKRFKKNVLGYIRSTEVTYNKENGSWHPHFHVL 87 (233)
T ss_pred HHHHHHHHHHHHHhccchhcccceEEEEEEEecCCCCCeeccceEEE
Confidence 45666666677766 22 22333211111 11134578899987
No 47
>PF00552 IN_DBD_C: Integrase DNA binding domain The structure of the C-terminal DNA binding domain.; InterPro: IPR001037 Integrase comprises three domains capable of folding independently and whose three-dimensional structures are known. However, the manner in which the N-terminal, catalytic core, and C-terminal domains interact in the holoenzyme remains obscure. Numerous studies indicate that the enzyme functions as a multimer, minimally a dimer. The integrase proteins from Human immunodeficiency virus 1 (HIV-1) and Avian sarcoma virus (have been studied most carefully with respect to the structural basis of catalysis. Although the active site of avian virus integrase does not undergo significant conformational changes on binding the required metal cofactor, that of HIV-1 does. This active site-mediated conformational change in HIV-1 reorganises the catalytic core and C-terminal domains and appears to promote an interaction that is favourable for catalysis []. Retroviral integrase is synthesised as part of the POL polyprotein that contains; an aspartyl protease, a reverse transcriptase, RNase H and integrase. POL polyprotein undergoes specific enzymatic cleavage to yield the mature proteins. The presence of retrovirus integrase-related gene sequences in eukaryotes is known. Bacterial transposases involved in the transposition of the insertion sequence also belong to this group. HIV-1 integrase catalyses the incorporation of virally derived DNA into the human genome. This unique step in the virus life cycle provides a variety of points for intervention and hence is an attractive target for the development of new therapeutics for the treatment of AIDS []. Substrate recognition by the retroviral integrase enzyme is critical for retroviral integration. To catalyse this recombination event, integrase must recognise and act on two types of substrates, viral DNA and host DNA, yet the necessary interactions exhibit markedly different degrees of specificity [].; GO: 0003676 nucleic acid binding; PDB: 1QMC_B 1IHV_A 1IHW_B 1C6V_X 1C0M_B 1C1A_A 1EX4_A.
Probab=48.39 E-value=38 Score=18.94 Aligned_cols=31 Identities=10% Similarity=0.077 Sum_probs=23.8
Q ss_pred CceEEEECCcEEEEecCCCCCCeeEEEEecCccC
Q psy14209 12 NTWWFVTDNDVVAFPDIKPAAKHHTLVISKQHVL 45 (119)
Q Consensus 12 ~~~iv~e~~~~~a~~~~~p~~~gh~lViPk~H~~ 45 (119)
|..++++++..+++.+... .-.++||+|.+.
T Consensus 21 P~~vL~~G~Gav~v~~~~~---~~~~wvP~R~~K 51 (55)
T PF00552_consen 21 PDPVLWWGEGAVVVKDQES---DKPIWVPRRKVK 51 (55)
T ss_dssp EEEEEEECSSEEEEECSSC-----EEEEEGGGEE
T ss_pred hhHheeeccccEEEecCCc---cCEEEeehhHcE
Confidence 6789999999999886633 236899998864
No 48
>cd01617 DCX Ubiquitin-like domain of DCX. DCX The ubiquitin-like DCX domain is present in tandem within the N-terminal half of the doublecortin protein. Doublecortin is expressed in migrating neurons. Mutations in the gene encoding doublecortin cause lissencephaly in males and 'double-cortex syndrome' in females.
Probab=46.75 E-value=28 Score=20.70 Aligned_cols=29 Identities=17% Similarity=0.270 Sum_probs=24.7
Q ss_pred cEEEEecCCCCCCeeEEEEecCccCCccC
Q psy14209 21 DVVAFPDIKPAAKHHTLVISKQHVLNAKV 49 (119)
Q Consensus 21 ~~~a~~~~~p~~~gh~lViPk~H~~~~~~ 49 (119)
.++++.+-.+..+|..++++++.+.++..
T Consensus 2 ~I~~~rNGD~~~~g~~~~i~~~~~~sfd~ 30 (80)
T cd01617 2 RVVVYRNGDPFFKGVRLLVNRRRFKSFDA 30 (80)
T ss_pred EEEEEECCCCCCCCEEEEEChhhhCCHHH
Confidence 46788899999999999999998887753
No 49
>COG1655 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=40.52 E-value=33 Score=25.20 Aligned_cols=43 Identities=12% Similarity=0.081 Sum_probs=31.3
Q ss_pred CCccccccc--C----CCceEEEEC-CcEEEEecCCCCCCeeEEEEecCcc
Q psy14209 1 MSFLSKIIF--K----PNTWWFVTD-NDVVAFPDIKPAAKHHTLVISKQHV 44 (119)
Q Consensus 1 ~c~fc~ii~--e----~~~~iv~e~-~~~~a~~~~~p~~~gh~lViPk~H~ 44 (119)
.|++|...- | ...+|+..| +.+..+-+++|.. +|++|.|.--.
T Consensus 21 eCPvC~tkFkkeev~tgsiRiiagDld~~lkygninP~f-Y~VvvCP~C~y 70 (267)
T COG1655 21 ECPVCNTKFKKEEVKTGSIRIIAGDLDFFLKYGNINPYF-YDVVVCPICYY 70 (267)
T ss_pred ccCcccchhhhhheeccceeEecccccceeeccccCCce-eEEEEcchhhH
Confidence 599999663 3 246777766 5566777888876 79999998643
No 50
>PF06619 DUF1149: Protein of unknown function (DUF1149); InterPro: IPR009530 This entry consists of several hypothetical bacterial proteins of unknown function.; PDB: 2HNG_A 2O2A_C.
Probab=40.25 E-value=90 Score=20.67 Aligned_cols=41 Identities=20% Similarity=0.020 Sum_probs=21.5
Q ss_pred EecCccCCccCCCHhHHHHHHH-HHHHHHHHHH-----hcCCCceEE
Q psy14209 39 ISKQHVLNAKVLTSEHKALVQW-LEDLSAITYL-----CLMVIFHRY 79 (119)
Q Consensus 39 iPk~H~~~~~~L~~~e~~~l~~-~~~~~~~~~~-----~~~~~~~~~ 79 (119)
+..|-+.+.++++.+|.+.|+. ++...+++-- +++..|.++
T Consensus 79 i~~r~~~~~sd~~~~e~~~Ls~PL~d~i~rLTYEVTeIalD~PGinL 125 (127)
T PF06619_consen 79 IKDRYVGEPSDLSQEEVELLSRPLLDYIERLTYEVTEIALDEPGINL 125 (127)
T ss_dssp EET---SSGGGS-HHHHHHHHHHHHHHHHHHHHHHHHHHHTSS----
T ss_pred eeccccCChhhcCHHHHHHHHHHHHHHHHhheeEEEEEEecCCCCCc
Confidence 3445567788999999876655 4445555443 667676654
No 51
>PF04270 Strep_his_triad: Streptococcal histidine triad protein ; InterPro: IPR006270 This entry represents a repeated sequence region that includes a His-X-X-His-X-His (histidine triad) motif, which is found in family of Streptococcal proteins. Members of the family are suggested to cleave human complement component 3, and family member PhpA has been shown in vaccine studies to be a protective antigen in mice []. ; PDB: 2CS7_C.
Probab=39.14 E-value=71 Score=17.80 Aligned_cols=37 Identities=19% Similarity=0.087 Sum_probs=22.1
Q ss_pred CceEEEECCcEEEEecCCCCCCeeEEEEecCccCCccCCCHhHHHHHH
Q psy14209 12 NTWWFVTDNDVVAFPDIKPAAKHHTLVISKQHVLNAKVLTSEHKALVQ 59 (119)
Q Consensus 12 ~~~iv~e~~~~~a~~~~~p~~~gh~lViPk~H~~~~~~L~~~e~~~l~ 59 (119)
|..|+-+++.-+++..- +|.-.|||. +|++.|++...
T Consensus 11 p~dI~~~~~~gy~vpHg-----dH~HyI~k~------dLs~~E~~aA~ 47 (53)
T PF04270_consen 11 PADIISETGDGYVVPHG-----DHFHYIPKS------DLSASELKAAQ 47 (53)
T ss_dssp GGG--EE-SSEEEEEET-----TEEEEEEGG------GS-HHHHHHHH
T ss_pred HHHccccCCCeEEeeCC-----CcccCCchh------hCCHHHHHHHH
Confidence 56788888777766653 788888875 56777754433
No 52
>PRK09458 pspB phage shock protein B; Provisional
Probab=37.99 E-value=69 Score=19.21 Aligned_cols=23 Identities=13% Similarity=0.059 Sum_probs=19.3
Q ss_pred cCCCHhHHHHHHHHHHHHHHHHH
Q psy14209 48 KVLTSEHKALVQWLEDLSAITYL 70 (119)
Q Consensus 48 ~~L~~~e~~~l~~~~~~~~~~~~ 70 (119)
..|+++|.+.|.++...|+++-+
T Consensus 34 ~~Ls~~d~~~L~~L~~~A~rm~~ 56 (75)
T PRK09458 34 QGLSQEEQQRLAQLTEKAERMRE 56 (75)
T ss_pred CCCCHHHHHHHHHHHHHHHHHHH
Confidence 45899999999999888888776
No 53
>PF02729 OTCace_N: Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain; InterPro: IPR006132 This entry contains two related enzymes: Aspartate carbamoyltransferase (2.1.3.2 from EC) (ATCase) catalyzes the conversion of aspartate and carbamoyl phosphate to carbamoylaspartate, the second step in the de novo biosynthesis of pyrimidine nucleotides []. In prokaryotes ATCase consists of two subunits: a catalytic chain (gene pyrB) and a regulatory chain (gene pyrI), while in eukaryotes it is a domain in a multi- functional enzyme (called URA2 in yeast, rudimentary in Drosophila, and CAD in mammals []) that also catalyzes other steps of the biosynthesis of pyrimidines. Ornithine carbamoyltransferase (2.1.3.3 from EC) (OTCase) catalyzes the conversion of ornithine and carbamoyl phosphate to citrulline. In mammals this enzyme participates in the urea cycle [] and is located in the mitochondrial matrix. In prokaryotes and eukaryotic microorganisms it is involved in the biosynthesis of arginine. In some bacterial species it is also involved in the degradation of arginine [] (the arginine deaminase pathway). It has been shown [] that these two enzymes are evolutionary related. The predicted secondary structure of both enzymes are similar and there are some regions of sequence similarities. One of these regions includes three residues which have been shown, by crystallographic studies [], to be implicated in binding the phosphoryl group of carbamoyl phosphate and may also play a role in trimerization of the molecules []. The carboxyl-terminal, aspartate/ornithine-binding domain is is described by IPR006131 from INTERPRO. ; GO: 0016743 carboxyl- or carbamoyltransferase activity, 0006520 cellular amino acid metabolic process; PDB: 1ML4_A 2P2G_D 2I6U_A 2YFK_B 3D6N_B 3SDS_A 3GD5_A 3R7L_B 3R7F_A 3R7D_A ....
Probab=33.08 E-value=86 Score=20.81 Aligned_cols=20 Identities=30% Similarity=0.323 Sum_probs=13.9
Q ss_pred CccCCccCCCHhHHHHHHHH
Q psy14209 42 QHVLNAKVLTSEHKALVQWL 61 (119)
Q Consensus 42 ~H~~~~~~L~~~e~~~l~~~ 61 (119)
||.-++.+++++|+..+-..
T Consensus 1 r~~l~~~dls~~ei~~ll~~ 20 (142)
T PF02729_consen 1 RHLLSIKDLSPEEIEALLDL 20 (142)
T ss_dssp SEBSSGGGS-HHHHHHHHHH
T ss_pred CCcCchhhCCHHHHHHHHHH
Confidence 57889999999995544443
No 54
>PRK03879 ribonuclease P protein component 1; Validated
Probab=33.00 E-value=88 Score=19.52 Aligned_cols=34 Identities=6% Similarity=-0.004 Sum_probs=25.0
Q ss_pred CceEEEECCcEEEEecCCCCCCeeEEEEecCccCCccCC
Q psy14209 12 NTWWFVTDNDVVAFPDIKPAAKHHTLVISKQHVLNAKVL 50 (119)
Q Consensus 12 ~~~iv~e~~~~~a~~~~~p~~~gh~lViPk~H~~~~~~L 50 (119)
.+.+|.|+.+.+.+. ..+-...+||.+..=-.++
T Consensus 32 ~GiVv~ETknt~~I~-----~~~~~~~VPK~~~iF~f~~ 65 (96)
T PRK03879 32 KGRVVDETRNTLVIE-----TDGKEWMVPKDGATFEFEL 65 (96)
T ss_pred eEEEEEeceeEEEEE-----cCCcEEEEeCCCeEEEEEE
Confidence 467899999998888 2346788999986433444
No 55
>smart00538 POP4 A domain found in a protein subunit of human RNase MRP and RNase P ribonucleoprotein complexes and archaeal proteins.
Probab=32.37 E-value=88 Score=19.29 Aligned_cols=36 Identities=6% Similarity=-0.025 Sum_probs=26.0
Q ss_pred CceEEEECCcEEEEecCCCCCCeeEEEEecCccCCccCCC
Q psy14209 12 NTWWFVTDNDVVAFPDIKPAAKHHTLVISKQHVLNAKVLT 51 (119)
Q Consensus 12 ~~~iv~e~~~~~a~~~~~p~~~gh~lViPk~H~~~~~~L~ 51 (119)
.+.+|.|+.+.+.+.... +-+.+|||.+..=...++
T Consensus 30 ~GiVv~ET~nt~~I~t~~----~~~~~IpK~~~vF~f~l~ 65 (92)
T smart00538 30 EGIVVDETRNTLKIETKE----GRVKTVPKDGAVFEFELP 65 (92)
T ss_pred EEEEEEeeeeEEEEEeCC----CcEEEEECCCeEEEEEEC
Confidence 367899999998887543 568999999864333343
No 56
>KOG4122|consensus
Probab=30.20 E-value=79 Score=16.21 Aligned_cols=18 Identities=11% Similarity=0.167 Sum_probs=13.1
Q ss_pred eEEEECCcEEEEecCCCC
Q psy14209 14 WWFVTDNDVVAFPDIKPA 31 (119)
Q Consensus 14 ~iv~e~~~~~a~~~~~p~ 31 (119)
++|.+.+.+++++..+|+
T Consensus 15 y~VrRrgR~yViC~~~pr 32 (38)
T KOG4122|consen 15 YLVRRRGRVYVICKTHPR 32 (38)
T ss_pred eEEEEcccEEEEcCCCcc
Confidence 566677778888877765
No 57
>PF06667 PspB: Phage shock protein B; InterPro: IPR009554 This family consists of several bacterial phage shock protein B (PspB) sequences. The phage shock protein (psp) operon is induced in response to heat, ethanol, osmotic shock and infection by filamentous bacteriophages []. Expression of the operon requires the alternative sigma factor sigma54 and the transcriptional activator PspF. In addition, PspA plays a negative regulatory role, and the integral-membrane proteins PspB and PspC play a positive one [].; GO: 0006355 regulation of transcription, DNA-dependent, 0009271 phage shock
Probab=29.61 E-value=1.1e+02 Score=18.23 Aligned_cols=23 Identities=17% Similarity=0.030 Sum_probs=19.1
Q ss_pred cCCCHhHHHHHHHHHHHHHHHHH
Q psy14209 48 KVLTSEHKALVQWLEDLSAITYL 70 (119)
Q Consensus 48 ~~L~~~e~~~l~~~~~~~~~~~~ 70 (119)
..|+++|.+.|.++...++++-+
T Consensus 34 ~gLs~~d~~~L~~L~~~a~rm~e 56 (75)
T PF06667_consen 34 QGLSEEDEQRLQELYEQAERMEE 56 (75)
T ss_pred CCCCHHHHHHHHHHHHHHHHHHH
Confidence 45889999999998888888776
No 58
>COG0564 RluA Pseudouridylate synthases, 23S RNA-specific [Translation, ribosomal structure and biogenesis]
Probab=29.33 E-value=59 Score=24.35 Aligned_cols=17 Identities=12% Similarity=0.055 Sum_probs=13.6
Q ss_pred CCceEEEECCcEEEEec
Q psy14209 11 PNTWWFVTDNDVVAFPD 27 (119)
Q Consensus 11 ~~~~iv~e~~~~~a~~~ 27 (119)
.+-.||||||+++|+--
T Consensus 76 ~~l~IlyED~~llVvnK 92 (289)
T COG0564 76 IPLDILYEDEDLLVVNK 92 (289)
T ss_pred CCccEEEecCCEEEEEC
Confidence 34579999999999853
No 59
>cd00165 S4 S4/Hsp/ tRNA synthetase RNA-binding domain; The domain surface is populated by conserved, charged residues that define a likely RNA-binding site; Found in stress proteins, ribosomal proteins and tRNA synthetases; This may imply a hitherto unrecognized functional similarity between these three protein classes.
Probab=28.10 E-value=47 Score=17.74 Aligned_cols=13 Identities=8% Similarity=0.044 Sum_probs=10.2
Q ss_pred ceEEEECCcEEEE
Q psy14209 13 TWWFVTDNDVVAF 25 (119)
Q Consensus 13 ~~iv~e~~~~~a~ 25 (119)
..++|||+.++++
T Consensus 57 ~~i~~ed~~~lvv 69 (70)
T cd00165 57 EDIVYEDKKLLVV 69 (70)
T ss_pred cceeeccCCEEEe
Confidence 3788999988765
No 60
>PF04835 Pox_A9: A9 protein conserved region; InterPro: IPR006920 This entry represents a family of Chordopoxvirus A9 proteins. Chordopoxvirus belongs to the family Poxviridae and is the cause of vertebrate infections [].
Probab=27.96 E-value=14 Score=20.69 Aligned_cols=11 Identities=45% Similarity=1.238 Sum_probs=7.8
Q ss_pred eeeccCccccC
Q psy14209 109 IIFKPNTWWFV 119 (119)
Q Consensus 109 ~~~~~~~~w~~ 119 (119)
-+.++||+||+
T Consensus 15 ~k~R~NsF~fV 25 (54)
T PF04835_consen 15 NKLRPNSFWFV 25 (54)
T ss_pred hhcCCchHHHH
Confidence 35678888874
No 61
>COG2928 Uncharacterized conserved protein [Function unknown]
Probab=27.41 E-value=88 Score=22.73 Aligned_cols=35 Identities=20% Similarity=0.301 Sum_probs=27.2
Q ss_pred CCcEEEEecCCCC-CCeeEEEEecCccCCccCCCHhH
Q psy14209 19 DNDVVAFPDIKPA-AKHHTLVISKQHVLNAKVLTSEH 54 (119)
Q Consensus 19 ~~~~~a~~~~~p~-~~gh~lViPk~H~~~~~~L~~~e 54 (119)
++.+.+|.|-.|. +.|.++.+||+.+..+ |++.|+
T Consensus 152 ~~~v~VfvPTTPNPTsGfl~~Vpkedi~~l-dmtvEd 187 (222)
T COG2928 152 RPMVAVFVPTTPNPTSGFLLLVPKEDIVPL-DMTVED 187 (222)
T ss_pred CceEEEEcCCCCCCCcceEEEEEHHHceec-cccHHH
Confidence 4778899999884 5899999999988644 466665
No 62
>COG0540 PyrB Aspartate carbamoyltransferase, catalytic chain [Nucleotide transport and metabolism]
Probab=27.18 E-value=69 Score=24.54 Aligned_cols=21 Identities=19% Similarity=0.246 Sum_probs=16.6
Q ss_pred ecCccCCccCCCHhHHHHHHH
Q psy14209 40 SKQHVLNAKVLTSEHKALVQW 60 (119)
Q Consensus 40 Pk~H~~~~~~L~~~e~~~l~~ 60 (119)
..+|+-++.||+.+|+..+-+
T Consensus 6 ~~rhlis~~dls~~ei~~ll~ 26 (316)
T COG0540 6 KMRHLISIEDLSREELELLLD 26 (316)
T ss_pred cccceechHhCCHHHHHHHHH
Confidence 578999999999999554433
No 63
>PF01868 UPF0086: Domain of unknown function UPF0086; InterPro: IPR002730 The p29 subunit (also known as Rpp29 or Pop4) of the related ribonucleoproteins ribonuclease (RNase) P and RNase MRP can be found in both eukaryotes and arachea []. The structure of the RNase P subunit, Rpp29, from Methanobacterium thermoautotrophicum has been determined. Mth Rpp29 is a member of the oligonucleotide/oligosaccharide binding fold family. It contains a structured beta-barrel core and unstructured N- and C-terminal extensions bearing several highly conserved amino acid residues that could be involved in RNA contacts in the protein-RNA complex []. Rpp29 (3.1.26.5 from EC) catalyses the endonucleolytic cleavage of RNA, removing 5'-extranucleotides from tRNA precursor. It interacts with the Rpp25 and Pop5 subunits. RNase P is a ubiquitous ribonucleoprotein enzyme primarily responsible for cleaving the 5' leader sequence during maturation of tRNAs in all three domains of life. In eubacteria, this enzyme is made up of two subunits: a large RNA (approximately 120 kDa) responsible for mediating catalysis, and a small protein cofactor (approximately 15 kDa) that modulates substrate recognition and is required for efficient in vivo catalysis. In contrast, multiple proteins are associated with eukaryotic and archaeal RNase P, and these proteins exhibit no recognizable homology to the conserved bacterial protein subunit. In reconstitution experiments with recombinantly expressed and purified protein subunits Mth Rpp29, a homologue of the Rpp29 protein subunit from eukaryotic RNase P, is an essential protein component of the archaeal holoenzyme []. In Saccharomyces cerevisiae (Baker's yeast), RNase P consists of 9 protein subunits (Pop1, Pop3-8, Rpr2 and Rpp1), while in humans there are 10 subunits (Rpp14, 20, 21, 25, 29, 30, 38, 40, hPop1, 5). RNase MRP (mitochondrial RNA processing) is an rRNA processing enzyme that cleaves a specific site within precursor rRNA to generate the mature 5'-end of 5.8S rRNA []. RNase MRP also cleaves primers for mitochondrial DNA replication and CLB2 mRNA. In yeast, RNase MRP possesses one putatively catalytic RNA and at least 9 protein subunits and is highly related to RNase P (Pop1, Pop3-Pop8, Rpp1, Snm1 and Rmp1).; GO: 0003723 RNA binding, 0004540 ribonuclease activity, 0006364 rRNA processing, 0006379 mRNA cleavage, 0008033 tRNA processing, 0000172 ribonuclease MRP complex, 0030677 ribonuclease P complex; PDB: 1V76_B 2ZAE_C 1OQK_A 2KI7_A 1TSF_A 1TS9_A 1PC0_A.
Probab=25.65 E-value=1.6e+02 Score=17.93 Aligned_cols=29 Identities=7% Similarity=-0.047 Sum_probs=23.1
Q ss_pred ceEEEECCcEEEEecCCCCCCeeEEEEecCccC
Q psy14209 13 TWWFVTDNDVVAFPDIKPAAKHHTLVISKQHVL 45 (119)
Q Consensus 13 ~~iv~e~~~~~a~~~~~p~~~gh~lViPk~H~~ 45 (119)
+.+|.|+.+.+.+... .+.+..+||++..
T Consensus 32 GiVV~ETknt~~I~t~----~~~~~~IpK~~~v 60 (89)
T PF01868_consen 32 GIVVDETKNTFVIVTE----DGKVKTIPKAGSV 60 (89)
T ss_dssp EEEEEEETTEEEEEET----TEEEEEEESTTEE
T ss_pred EEEEEcccceEEEEec----CCcEEEEecCCEE
Confidence 5789999999888743 3568999999864
No 64
>PF06907 Latexin: Latexin; InterPro: IPR009684 This family consists of several animal specific latexin and proteins related to latexin that belong to MEROPS proteinase inhibitor family I47, clan I- []. Latexin, a protein possessing inhibitory activity against rat carboxypeptidase A1 (CPA1) and CPA2 (MEROPS peptidase family M14A), is expressed in a neuronal subset in the cerebral cortex and cells in other neural and non-neural tissues of rat [, ]. OCX-32, the 32 kDa eggshell matrix protein, is present at high levels in the uterine fluid during the terminal phase of eggshell formation, and is localised predominantly in the outer eggshell. The timing of OCX-32 secretion into the uterine fluid suggests that it may play a role in the termination of mineral deposition []. OCX-32 protein possesses limited identity (32%) to two unrelated proteins: latexin and to a skin protein that is encoded by a retinoic acid receptor-responsive gene, TIG1. Tazarotene Induced Gene 1 (TIG1) is a putative 228 transmembrane protein with a small N-terminal intracellular region, a single membrane-spanning hydrophobic region, and a large C-terminal extracellular region containing a glycosylation signal. TIG1 is up-regulated by retinoic acid receptor but not by retinoid X receptor-specific synthetic retinoids []. TIG1 may be a tumour suppressor gene whose diminished expression is involved in the malignant progression of prostate cancer [].; PDB: 1WNH_A 2BO9_B.
Probab=22.52 E-value=1e+02 Score=22.39 Aligned_cols=23 Identities=13% Similarity=-0.029 Sum_probs=20.2
Q ss_pred CceEEEEeCCCCCccceeEEEEe
Q psy14209 75 IFHRYGFHWPPFYSIGHLHLHVI 97 (119)
Q Consensus 75 ~~~~~~~~~~~~q~v~HlH~Hii 97 (119)
.+|.+-+|..+.|++-++|+|++
T Consensus 176 FdytVLLHe~~sQEIipc~m~l~ 198 (220)
T PF06907_consen 176 FDYTVLLHEMSSQEIIPCQMHLV 198 (220)
T ss_dssp EEEEEEEEETTTTEEEEEEEEEE
T ss_pred eceEEEEeecccccceeeEEEEE
Confidence 36888889888899999999998
No 65
>PF08751 TrwC: TrwC relaxase; InterPro: IPR014862 Relaxases are DNA strand transferases which function during the conjugative cell to cell DNA transfer. TrwC binds to the origin of transfer (oriT) and melts the double helix. ; PDB: 1ZM5_A 1S6M_A 1OSB_C 2CDM_C 1OMH_A 1QX0_A 3L57_A 3L6T_A 2A0I_A 2Q7U_A ....
Probab=22.49 E-value=52 Score=24.66 Aligned_cols=12 Identities=33% Similarity=0.401 Sum_probs=9.3
Q ss_pred CccceeEEEEec
Q psy14209 87 YSIGHLHLHVIA 98 (119)
Q Consensus 87 q~v~HlH~Hiip 98 (119)
..=||||.|++-
T Consensus 157 ~~DP~LHtH~vi 168 (296)
T PF08751_consen 157 AGDPQLHTHVVI 168 (296)
T ss_dssp TSSEEEEEEEEE
T ss_pred ccccCccceeee
Confidence 345899999974
No 66
>PF10335 DUF294_C: Putative nucleotidyltransferase substrate binding domain; InterPro: IPR018821 This entry is found associated with presumed nucleotidyltransferase domains and seems to be distantly related to other helical substrate binding domains.
Probab=22.06 E-value=1.5e+02 Score=19.59 Aligned_cols=28 Identities=4% Similarity=-0.071 Sum_probs=22.1
Q ss_pred ccCCccCCCHhHHHHHHHHHHHHHHHHH
Q psy14209 43 HVLNAKVLTSEHKALVQWLEDLSAITYL 70 (119)
Q Consensus 43 H~~~~~~L~~~e~~~l~~~~~~~~~~~~ 70 (119)
..-++.+|+..|+..|.+.++.++++-+
T Consensus 112 n~i~~~~Ls~~er~~Lk~al~~i~~lq~ 139 (145)
T PF10335_consen 112 NYIDPDELSKLERRRLKEALRVIKRLQR 139 (145)
T ss_pred CccCHHHCCHHHHHHHHHHHHHHHHHHH
Confidence 3446788999999999998888777654
No 67
>PF02893 GRAM: GRAM domain; InterPro: IPR004182 The GRAM domain is found in glucosyltransferases, myotubularins and other putative membrane-associated proteins. It is normally about 70 amino acids in length. It is thought to be an intracellular protein-binding or lipid-binding signalling domain, which has an important function in membrane-associated processes. Mutations in the GRAM domain of myotubularins cause a muscle disease, which suggests that the domain is essential for the full function of the enzyme []. Myotubularin-related proteins are a large subfamily of protein tyrosine phosphatases (PTPs) that dephosphorylate D3-phosphorylated inositol lipids [].; PDB: 1M7R_B 1LW3_A 1ZVR_A 1ZSQ_A.
Probab=21.71 E-value=1.5e+02 Score=16.51 Aligned_cols=35 Identities=17% Similarity=0.151 Sum_probs=25.6
Q ss_pred ceEEEECCcEEEEecCCCCCCeeEEEEecCccCCc
Q psy14209 13 TWWFVTDNDVVAFPDIKPAAKHHTLVISKQHVLNA 47 (119)
Q Consensus 13 ~~iv~e~~~~~a~~~~~p~~~gh~lViPk~H~~~~ 47 (119)
.-.+|=+++.++|.+..+......+++|-+-+.++
T Consensus 31 ~G~LyiT~~~lcF~s~~~~~~~~~~~ipl~~I~~i 65 (69)
T PF02893_consen 31 QGRLYITNNYLCFYSNKFGSKTCKFVIPLSDIKSI 65 (69)
T ss_dssp EEEEEEESSEEEEEESSSSS-E-EEEEEGGGEEEE
T ss_pred eeEEEECCCEEEEEECCCCCceEEEEEEhHheeEE
Confidence 34688888999998877766666799998877655
No 68
>PF12616 DUF3775: Protein of unknown function (DUF3775); InterPro: IPR022254 This domain family is found in bacteria, and is approximately 80 amino acids in length. There is a single completely conserved residue G that may be functionally important.
Probab=21.54 E-value=64 Score=19.25 Aligned_cols=20 Identities=15% Similarity=0.044 Sum_probs=14.4
Q ss_pred ccCCCHhHHHHHHHHHHHHH
Q psy14209 47 AKVLTSEHKALVQWLEDLSA 66 (119)
Q Consensus 47 ~~~L~~~e~~~l~~~~~~~~ 66 (119)
+.+|+++|+..|-.+|.+++
T Consensus 10 I~~l~~deqaeLvALmwiGR 29 (75)
T PF12616_consen 10 IEDLNEDEQAELVALMWIGR 29 (75)
T ss_pred HHhCCHHHHHHHHHHHHhcC
Confidence 56788888877777776554
No 69
>PF03389 MobA_MobL: MobA/MobL family; InterPro: IPR005053 This entry represents a domain found at the N terminus of MobA in Escherichia coli, and MobL in Thiobacillus ferrooxidans (Acidithiobacillus ferrooxidans), as well as in conjugal transfer protein TraA. MobA and MobL are mobilisation proteins, which are essential for specific plasmid transfer.; GO: 0009291 unidirectional conjugation; PDB: 2NS6_A.
Probab=21.23 E-value=3.1e+02 Score=19.47 Aligned_cols=20 Identities=15% Similarity=0.076 Sum_probs=10.6
Q ss_pred ceEEEEeCCCCCccceeEEEEec
Q psy14209 76 FHRYGFHWPPFYSIGHLHLHVIA 98 (119)
Q Consensus 76 ~~~~~~~~~~~q~v~HlH~Hiip 98 (119)
.+.+.+|... . ...|+||+-
T Consensus 102 ~~d~aIH~d~-~--~NpHaHim~ 121 (216)
T PF03389_consen 102 AADVAIHDDG-P--RNPHAHIMF 121 (216)
T ss_dssp -EEEEEEEET-T--TEEEEEEEE
T ss_pred EEEEEEecCC-C--CCCEEEEEe
Confidence 4667888522 1 345666653
No 70
>PF04986 Y2_Tnp: Putative transposase; InterPro: IPR007069 Transposases are needed for efficient transposition of the insertion sequence or transposon DNA. This family includes transposases IS1294 and IS801 []. More information about these proteins can be found at Protein of the Month: Transposase [].; GO: 0003677 DNA binding, 0004803 transposase activity, 0006313 transposition, DNA-mediated
Probab=20.95 E-value=1.3e+02 Score=20.80 Aligned_cols=22 Identities=18% Similarity=-0.049 Sum_probs=12.0
Q ss_pred EEEEeCCCCCccceeEEEEecC
Q psy14209 78 RYGFHWPPFYSIGHLHLHVIAP 99 (119)
Q Consensus 78 ~~~~~~~~~q~v~HlH~Hiip~ 99 (119)
...+|.=+.+--.|.|+|++-+
T Consensus 3 i~vLHT~Gr~L~~hpHiH~lVt 24 (183)
T PF04986_consen 3 IAVLHTWGRDLNWHPHIHCLVT 24 (183)
T ss_pred EEEEEecCcccccCCeEEEEEe
Confidence 3444442223445888888754
No 71
>PF14394 DUF4423: Domain of unknown function (DUF4423)
Probab=20.71 E-value=2.9e+02 Score=18.91 Aligned_cols=51 Identities=4% Similarity=-0.079 Sum_probs=24.5
Q ss_pred cCccCCc-cCCCHhHHHHHHHHHHHHHHHHHhcCCCceEEEEeCCCCCccceeEEEEec
Q psy14209 41 KQHVLNA-KVLTSEHKALVQWLEDLSAITYLCLMVIFHRYGFHWPPFYSIGHLHLHVIA 98 (119)
Q Consensus 41 k~H~~~~-~~L~~~e~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~v~HlH~Hiip 98 (119)
.|+++++ -.+++++.+.+.+.++..++=+..+... .+....|.++-++++|
T Consensus 119 ~R~~s~~T~~vs~~~~~ki~~~i~~fRk~i~~i~~~-------~~~~~~Vy~lN~qlFP 170 (171)
T PF14394_consen 119 ERDFSGLTMSVSREDYEKIKKEIREFRKKIIAIAEE-------DKEPDRVYQLNIQLFP 170 (171)
T ss_pred ccceeeeEEEeCHHHHHHHHHHHHHHHHHHHHHHhc-------CCCCCeEEEEEEEEec
Confidence 4455555 3466666665555555443322211111 0112466677777775
No 72
>PF05199 GMC_oxred_C: GMC oxidoreductase; InterPro: IPR007867 The glucose-methanol-choline (GMC) oxidoreductases are FAD flavoproteins oxidoreductases [, ]. These enzymes include a variety of proteins; choline dehydrogenase (CHD), methanol oxidase (MOX) and cellobiose dehydrogenase (1.1.99.18 from EC) [] which share a number of regions of sequence similarities. The function of this C-terminal conserved domain is not yet known.; GO: 0016614 oxidoreductase activity, acting on CH-OH group of donors, 0055114 oxidation-reduction process; PDB: 3BG7_F 2IGM_D 3BLY_A 3BG6_H 3LSK_A 2IGO_A 3K4B_A 3K4L_B 2IGN_B 3K4M_H ....
Probab=20.06 E-value=2.4e+02 Score=17.75 Aligned_cols=41 Identities=5% Similarity=-0.093 Sum_probs=23.1
Q ss_pred CCCCeeEEEEecCccC----Cc-cCCCHhHHHHHHHHHHHHHHHHH
Q psy14209 30 PAAKHHTLVISKQHVL----NA-KVLTSEHKALVQWLEDLSAITYL 70 (119)
Q Consensus 30 p~~~gh~lViPk~H~~----~~-~~L~~~e~~~l~~~~~~~~~~~~ 70 (119)
|.+.|++.+-++.... ++ ...++.+++.+.+.++.++++++
T Consensus 1 P~S~G~V~L~~~d~~~~p~i~~~y~~~~~D~~~~~~~~~~~~~i~~ 46 (144)
T PF05199_consen 1 PKSRGRVTLDSSDPFGQPLIDPNYLSDPRDLEALREGIKRARRILR 46 (144)
T ss_dssp -SS-BEEEESSSSTTSEEEEE--TTSSHHHHHHHHHHHHHHHHHHT
T ss_pred CCCCcEEEeCCCCCCCCcEEEeCCCCCHHHHHHHHHHHHHHHHHHh
Confidence 4556666666633211 11 23556777777777777777776
Done!