Query psy14209
Match_columns 119
No_of_seqs 149 out of 1078
Neff 8.3
Searched_HMMs 29240
Date Fri Aug 16 22:14:31 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy14209.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/14209hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3n1s_A HIT-like protein HINT; 100.0 7.7E-37 2.6E-41 199.2 10.4 101 1-101 4-109 (119)
2 4egu_A Histidine triad (HIT) p 100.0 5.5E-36 1.9E-40 194.9 10.7 103 1-103 5-112 (119)
3 3o1c_A Histidine triad nucleot 100.0 1.5E-35 5.2E-40 194.8 9.9 104 1-105 16-123 (126)
4 3oj7_A Putative histidine tria 100.0 3.4E-35 1.2E-39 190.7 10.8 102 2-105 9-114 (117)
5 3o0m_A HIT family protein; ssg 100.0 1.5E-34 5.1E-39 194.9 10.8 106 1-106 6-116 (149)
6 3ksv_A Uncharacterized protein 100.0 2.1E-34 7.1E-39 194.4 11.5 102 1-102 12-117 (149)
7 3lb5_A HIT-like protein involv 100.0 5.9E-34 2E-38 194.3 11.3 106 1-106 29-138 (161)
8 1xqu_A HIT family hydrolase; p 100.0 5.1E-34 1.7E-38 192.1 10.0 101 1-101 36-141 (147)
9 3imi_A HIT family protein; str 100.0 8.2E-34 2.8E-38 190.9 10.6 105 1-105 10-119 (147)
10 3l7x_A SMU.412C, putative HIT- 100.0 2.8E-33 9.7E-38 192.9 10.7 105 1-105 37-146 (173)
11 2eo4_A 150AA long hypothetical 100.0 9E-33 3.1E-37 186.0 10.7 102 2-103 1-106 (149)
12 3r6f_A HIT family protein; str 100.0 2.5E-33 8.5E-38 186.2 7.0 98 1-102 7-104 (135)
13 1y23_A HIT, histidine triad pr 100.0 1.2E-32 4.1E-37 184.4 9.0 102 1-102 6-111 (145)
14 3p0t_A Uncharacterized protein 100.0 7.5E-32 2.6E-36 179.4 10.0 98 1-101 6-105 (138)
15 3ano_A AP-4-A phosphorylase; d 100.0 1.4E-30 4.9E-35 185.0 9.6 102 1-102 70-177 (218)
16 2oik_A Histidine triad (HIT) p 100.0 1.6E-28 5.6E-33 166.0 11.8 96 1-102 11-107 (154)
17 1fit_A FragIle histidine prote 100.0 7.3E-28 2.5E-32 161.6 11.0 92 12-103 12-106 (147)
18 1z84_A Galactose-1-phosphate u 99.9 1.6E-26 5.4E-31 174.2 12.4 99 1-102 215-321 (351)
19 1gup_A Galactose-1-phosphate u 99.9 1.2E-26 4.2E-31 174.6 9.9 98 1-98 195-301 (348)
20 1ems_A Nitfhit, NIT-fragIle hi 99.9 4.6E-26 1.6E-30 175.3 11.2 100 1-102 298-401 (440)
21 3ohe_A Histidine triad (HIT) p 99.9 1.2E-23 4.3E-28 139.8 10.7 91 12-105 12-103 (137)
22 3i24_A HIT family hydrolase; s 99.9 3E-23 1E-27 139.7 10.4 89 12-103 12-101 (149)
23 3nrd_A Histidine triad (HIT) p 99.9 3.5E-21 1.2E-25 127.6 10.7 91 12-106 14-106 (135)
24 3i4s_A Histidine triad protein 99.8 5.2E-20 1.8E-24 123.8 10.6 90 13-106 18-109 (149)
25 3sp4_A Aprataxin-like protein; 99.8 2.7E-19 9.3E-24 125.3 8.2 90 15-106 23-132 (204)
26 3bl9_A Scavenger mRNA-decappin 99.6 4.6E-15 1.6E-19 108.9 10.8 95 6-102 142-250 (301)
27 1vlr_A MRNA decapping enzyme; 99.6 8.7E-15 3E-19 109.0 10.6 95 6-102 189-297 (350)
28 1z84_A Galactose-1-phosphate u 98.7 1.4E-07 4.9E-12 70.8 11.0 95 1-98 62-191 (351)
29 2pof_A CDP-diacylglycerol pyro 97.4 0.00057 1.9E-08 48.3 7.3 83 12-97 30-120 (227)
30 1gup_A Galactose-1-phosphate u 95.5 0.062 2.1E-06 40.0 7.8 61 35-98 107-171 (348)
31 3vg8_G Hypothetical protein TT 77.9 3.1 0.00011 25.8 3.8 24 74-97 76-100 (116)
32 2o2a_A Hypothetical protein GB 48.6 26 0.00089 22.2 3.9 43 39-81 78-126 (128)
33 3hfn_A ASL2047 protein; HFQ, S 48.3 19 0.00064 20.6 3.0 32 12-47 37-68 (72)
34 3hfo_A SSR3341 protein; HFQ, S 38.7 40 0.0014 19.1 3.4 33 11-47 34-66 (70)
35 3pqe_A L-LDH, L-lactate dehydr 36.6 34 0.0011 24.9 3.6 25 49-73 290-314 (326)
36 1mg4_A Doublecortin, doublecor 34.1 29 0.001 21.4 2.5 28 21-48 17-44 (113)
37 2zet_C Melanophilin; complex, 33.8 47 0.0016 21.6 3.6 23 43-65 10-32 (153)
38 2ljx_A Protein E6; metal bindi 33.0 16 0.00055 21.4 1.1 26 1-26 31-65 (84)
39 1ts9_A Ribonuclease P protein 32.6 61 0.0021 19.6 3.8 29 12-45 34-62 (102)
40 2hng_A Hypothetical protein; a 28.3 78 0.0027 20.0 3.7 40 39-78 79-124 (127)
41 1v76_A RNAse P protein PH1771P 27.3 90 0.0031 18.6 3.8 34 12-51 36-69 (96)
42 3gd5_A Otcase, ornithine carba 26.4 68 0.0023 23.4 3.7 28 40-70 12-39 (323)
43 2ns6_A Mobilization protein A; 26.3 1.4E+02 0.0047 19.8 5.0 45 48-98 80-124 (185)
44 2cs7_A Pneumococcal histidine 26.1 84 0.0029 16.9 4.7 33 12-55 14-46 (55)
45 1ml4_A Aspartate transcarbamoy 25.7 65 0.0022 23.3 3.5 26 41-66 5-30 (308)
46 1zbd_B Rabphilin-3A; G protein 25.2 52 0.0018 20.8 2.6 22 44-65 4-25 (134)
47 3qc5_X Platelet binding protei 24.4 1.2E+02 0.004 22.6 4.6 40 20-64 270-309 (360)
48 1pg5_A Aspartate carbamoyltran 23.7 69 0.0023 23.1 3.3 25 42-69 2-26 (299)
49 3by7_A Uncharacterized protein 23.5 76 0.0026 19.2 2.9 31 24-54 49-79 (100)
50 3d6n_B Aspartate carbamoyltran 23.3 72 0.0025 22.9 3.3 25 42-69 2-26 (291)
51 2ef0_A Ornithine carbamoyltran 23.3 84 0.0029 22.7 3.7 27 40-69 8-34 (301)
52 2zae_A Ribonuclease P protein 23.1 97 0.0033 19.5 3.5 34 12-51 67-100 (127)
53 2i6u_A Otcase, ornithine carba 23.0 83 0.0028 22.8 3.6 25 42-69 3-27 (307)
54 3r7f_A Aspartate carbamoyltran 22.9 75 0.0025 23.0 3.3 25 42-69 2-26 (304)
55 2dnf_A Doublecortin domain-con 22.4 23 0.00079 21.6 0.5 28 21-48 16-43 (108)
56 1pvv_A Otcase, ornithine carba 22.2 90 0.0031 22.7 3.7 26 41-66 7-32 (315)
57 1wgy_A RAP guanine nucleotide 22.1 44 0.0015 20.4 1.7 39 14-54 61-99 (104)
58 3tpf_A Otcase, ornithine carba 21.7 94 0.0032 22.5 3.7 25 42-69 3-27 (307)
59 1oth_A Protein (ornithine tran 21.5 95 0.0032 22.6 3.7 26 41-66 6-31 (321)
60 4ekn_B Aspartate carbamoyltran 21.5 1.2E+02 0.004 21.9 4.1 26 42-67 2-27 (306)
61 1vlv_A Otcase, ornithine carba 21.5 98 0.0034 22.6 3.8 27 40-66 18-44 (325)
62 3csu_A Protein (aspartate carb 21.3 95 0.0032 22.5 3.6 26 41-69 6-31 (310)
63 1omh_A TRWC protein; protein-D 20.9 37 0.0013 24.5 1.4 11 88-98 156-166 (293)
64 4h31_A Otcase, ornithine carba 20.9 1.2E+02 0.0041 22.4 4.2 23 41-63 31-53 (358)
65 1dxh_A Ornithine carbamoyltran 20.8 1E+02 0.0035 22.6 3.7 27 41-67 6-32 (335)
66 3sds_A Ornithine carbamoyltran 20.3 1.2E+02 0.004 22.5 4.0 24 40-63 22-45 (353)
67 1duv_G Octase-1, ornithine tra 20.3 1E+02 0.0036 22.6 3.7 26 41-66 5-30 (333)
68 3grf_A Ornithine carbamoyltran 20.2 1E+02 0.0035 22.5 3.6 26 41-69 7-32 (328)
No 1
>3n1s_A HIT-like protein HINT; histidine triad nucleotide binding protein, GMP, hydro; HET: 5GP; 1.45A {Escherichia coli} SCOP: d.13.1.0 PDB: 3n1t_A*
Probab=100.00 E-value=7.7e-37 Score=199.24 Aligned_cols=101 Identities=22% Similarity=0.209 Sum_probs=95.0
Q ss_pred CCccccccc-CCCceEEEECCcEEEEecCCCCCCeeEEEEecCccCCccCCCHhHHHHHHHHHHHHHHHHH--hcCCCce
Q psy14209 1 MSFLSKIIF-KPNTWWFVTDNDVVAFPDIKPAAKHHTLVISKQHVLNAKVLTSEHKALVQWLEDLSAITYL--CLMVIFH 77 (119)
Q Consensus 1 ~c~fc~ii~-e~~~~iv~e~~~~~a~~~~~p~~~gh~lViPk~H~~~~~~L~~~e~~~l~~~~~~~~~~~~--~~~~~~~ 77 (119)
.|+||+|++ |.++++|||||.++||.|++|.+|||+||+||+|++++.+|+++|+.++++++..++++++ .+++++|
T Consensus 4 ~CiFC~I~~ge~~~~iv~ede~~~af~d~~P~~pgH~LViPk~Hv~~l~dL~~~e~~~l~~l~~~~~~v~~~~~~~~~g~ 83 (119)
T 3n1s_A 4 ETIFSKIIRREIPSDIVYQDDLVTAFRDISPQAPTHILIIPNILIPTVNDVSAEHEQALGRMITVAAKIAEQEGIAEDGY 83 (119)
T ss_dssp CCHHHHHHTTSSCCCEEEECSSEEEEECSSCSSSEEEEEEESSCCCSGGGCCGGGHHHHHHHHHHHHHHHHHTTCTTTCE
T ss_pred CChhhhhhcCCCcCCEEEECCCEEEEECCCCCCCCeEEEEehhHhCCHhHcCHHHHHHHHHHHHHHHHHHHHhCCCCCCe
Confidence 499999999 9999999999999999999999999999999999999999999999999999999999998 4667899
Q ss_pred EEEEeCCC--CCccceeEEEEecCCC
Q psy14209 78 RYGFHWPP--FYSIGHLHLHVIAPVS 101 (119)
Q Consensus 78 ~~~~~~~~--~q~v~HlH~Hiip~~~ 101 (119)
|+++|+|+ ||+|+|+|+|||||+.
T Consensus 84 ni~~n~g~~agq~V~HlH~Hiipr~~ 109 (119)
T 3n1s_A 84 RLIMNTNRHGGQEVYHIHMHLLGGRP 109 (119)
T ss_dssp EEEEEEHHHHTCCSSSCCEEEEESSC
T ss_pred EEEEeCCCCcCCCcCEEEEEEeCCcc
Confidence 99999985 9999999999998754
No 2
>4egu_A Histidine triad (HIT) protein; structural genomics, center for structural genomics of infec diseases, csgid, HIT domain, unknown function; HET: 5GP; 0.95A {Clostridium difficile}
Probab=100.00 E-value=5.5e-36 Score=194.91 Aligned_cols=103 Identities=20% Similarity=0.150 Sum_probs=95.3
Q ss_pred CCccccccc-CCCceEEEECCcEEEEecCCCCCCeeEEEEecCccCCccCCCHhHHHHHHHHHHHHHHHHHhc--CCCce
Q psy14209 1 MSFLSKIIF-KPNTWWFVTDNDVVAFPDIKPAAKHHTLVISKQHVLNAKVLTSEHKALVQWLEDLSAITYLCL--MVIFH 77 (119)
Q Consensus 1 ~c~fc~ii~-e~~~~iv~e~~~~~a~~~~~p~~~gh~lViPk~H~~~~~~L~~~e~~~l~~~~~~~~~~~~~~--~~~~~ 77 (119)
.|+||+|++ |.+.++|||||.++||.|++|.+|||+||+||+|+.++.+|+++|+.++++++..++++++.+ ++++|
T Consensus 5 ~C~FC~i~~~e~~~~iv~e~e~~~af~d~~P~~pgH~LViPk~H~~~l~dL~~~e~~~l~~~~~~~~~~~~~~~~~~~~~ 84 (119)
T 4egu_A 5 DCIFCKIANGEIPSTKVYEDDRVLAFNDLNPVAPYHILVVPKKHYDSLIDIPDKEMDIVSHIHVVINKIAKEKGFDQTGF 84 (119)
T ss_dssp TCHHHHHHTTSSCCCEEEECSSEEEEECSSCSSSEEEEEEESSCCSSGGGSCGGGTHHHHHHHHHHHHHHHHHTHHHHCE
T ss_pred CccCeecccCCCCCCEEEECCCEEEEECCCCCCCceEEEEechhhCCHhHCCHhHHHHHHHHHHHHHHHHHHhCCCCCCE
Confidence 499999999 989999999999999999999999999999999999999999999999999999999998854 36799
Q ss_pred EEEEeCCC--CCccceeEEEEecCCCCC
Q psy14209 78 RYGFHWPP--FYSIGHLHLHVIAPVSEM 103 (119)
Q Consensus 78 ~~~~~~~~--~q~v~HlH~Hiip~~~~~ 103 (119)
|+++|+|+ ||+++|+|+|||||++-.
T Consensus 85 ni~~n~g~~agq~v~HlH~Hiip~~~~~ 112 (119)
T 4egu_A 85 RVINNCGSDGGQEVKHLHYHILAGKKLP 112 (119)
T ss_dssp EEEEEETTTTTCCSCSCCEEEEESSCCC
T ss_pred EEEEeCCCCCCCCcCEEEEEEeCCcccC
Confidence 99999986 899999999999986643
No 3
>3o1c_A Histidine triad nucleotide-binding protein 1; hydrolase, HINT protein, HIT protein, adenosine 5'- monophosphoramidase; HET: ADN; 1.08A {Oryctolagus cuniculus} SCOP: d.13.1.1 PDB: 3llj_A* 1rzy_A* 3qgz_A* 3o1z_A 3o1x_A* 4eqe_A* 4eqg_A* 4eqh_A* 3tw2_A* 1kpb_A 1kpf_A* 1kpa_A 1kpc_A 1av5_A* 1kpe_A* 4rhn_A* 3rhn_A* 5rhn_A* 6rhn_A
Probab=100.00 E-value=1.5e-35 Score=194.77 Aligned_cols=104 Identities=26% Similarity=0.259 Sum_probs=95.6
Q ss_pred CCccccccc-CCCceEEEECCcEEEEecCCCCCCeeEEEEecCccCCccCCCHhHHHHHHHHHHHHHHHHHhcC-CCceE
Q psy14209 1 MSFLSKIIF-KPNTWWFVTDNDVVAFPDIKPAAKHHTLVISKQHVLNAKVLTSEHKALVQWLEDLSAITYLCLM-VIFHR 78 (119)
Q Consensus 1 ~c~fc~ii~-e~~~~iv~e~~~~~a~~~~~p~~~gh~lViPk~H~~~~~~L~~~e~~~l~~~~~~~~~~~~~~~-~~~~~ 78 (119)
.|+||+|++ |.+.++|||||.++||.|++|.+|||+||+||+|+.++.+|+++|..++++++..++++++.++ +++||
T Consensus 16 ~CiFC~i~~~e~~~~iv~e~e~~~af~d~~P~~pgH~LViPk~H~~~l~dL~~~e~~~l~~l~~~~~~~~~~~~~~~g~n 95 (126)
T 3o1c_A 16 DTIFGKIIRKEIPAKIIFEDDQALAFHDISPQAPTHFLVIPKKHISQISAAEDADESLLGHLMIVGKKCAADLGLKKGYR 95 (126)
T ss_dssp SSHHHHHHHTSSCCCEEEECSSEEEEECSSCSSSEEEEEEESSCCCCGGGCCGGGHHHHHHHHHHHHHHHHHTTCTTCEE
T ss_pred CCCcchhhcCCCcCCEEEECCCEEEEECCCCCCCceEEEEechHhchHhhCchhHHHHHHHHHHHHHHHHHHhCCCCCeE
Confidence 499999999 9999999999999999999999999999999999999999999999999999999999998665 46999
Q ss_pred EEEeCCC--CCccceeEEEEecCCCCCCC
Q psy14209 79 YGFHWPP--FYSIGHLHLHVIAPVSEMSF 105 (119)
Q Consensus 79 ~~~~~~~--~q~v~HlH~Hiip~~~~~~~ 105 (119)
+++|+|+ ||+++|+|+|||||++ +++
T Consensus 96 i~~n~g~~agq~v~HlH~Hiipr~~-~~~ 123 (126)
T 3o1c_A 96 MVVNEGSDGGQSVYHVHLHVLGGRQ-MNW 123 (126)
T ss_dssp EECCCHHHHTCCSSSCCEEEEESSC-CCS
T ss_pred EEEecCCccCCccCEeEEEEeCCcc-cCC
Confidence 9999986 8999999999998754 443
No 4
>3oj7_A Putative histidine triad family protein; hydrolase, structural genomics, seattle structural genomics for infectious disease, ssgcid; 1.40A {Entamoeba histolytica} SCOP: d.13.1.0 PDB: 3omf_A* 3oxk_A*
Probab=100.00 E-value=3.4e-35 Score=190.71 Aligned_cols=102 Identities=23% Similarity=0.262 Sum_probs=93.7
Q ss_pred Cccccccc-CCCceEEEECCcEEEEecCCCCCCeeEEEEecCccCCccCCCHhHHHHHHHHHHHHHHHHH-hcCCCceEE
Q psy14209 2 SFLSKIIF-KPNTWWFVTDNDVVAFPDIKPAAKHHTLVISKQHVLNAKVLTSEHKALVQWLEDLSAITYL-CLMVIFHRY 79 (119)
Q Consensus 2 c~fc~ii~-e~~~~iv~e~~~~~a~~~~~p~~~gh~lViPk~H~~~~~~L~~~e~~~l~~~~~~~~~~~~-~~~~~~~~~ 79 (119)
|+||+|++ |.+.++|||||.++||.|++|.+|||+||+||+|++++.+|+++|+.++++++..++++++ .+. ++||+
T Consensus 9 CiFC~i~~~e~~~~iv~e~~~~~af~d~~P~~pgH~LViPk~H~~~l~dL~~~e~~~l~~l~~~~~~~~~~~~~-~g~ni 87 (117)
T 3oj7_A 9 CIFCKIAQKQIPSTIVYEDDEIFAFKDINPIAPIHILVIPKQHIASLNEITEENEAFIGKVLYKVSLIGKKECP-EGYRV 87 (117)
T ss_dssp CHHHHHHTTSSCCCEEEECSSEEEEECSSCSSSEEEEEEESSCCCSGGGCCTTTHHHHHHHHHHHHHHHHHHCT-TCEEE
T ss_pred CcccccccCCCCCCEEEECCcEEEEECCCCCCCceEEEEechHhCCHHHCCHHHHHHHHHHHHHHHHHHHhcCC-CCeEE
Confidence 99999999 8899999999999999999999999999999999999999999999999999999999888 454 49999
Q ss_pred EEeCCC--CCccceeEEEEecCCCCCCC
Q psy14209 80 GFHWPP--FYSIGHLHLHVIAPVSEMSF 105 (119)
Q Consensus 80 ~~~~~~--~q~v~HlH~Hiip~~~~~~~ 105 (119)
++|+|+ ||+++|+|+|||||++ +++
T Consensus 88 ~~n~g~~agq~v~H~H~Hiipr~~-~~~ 114 (117)
T 3oj7_A 88 VNNIGEDAGQTVKHIHFHILGGKK-LAW 114 (117)
T ss_dssp ECCCSTTTTCCSSSCCEEEEESSC-CCC
T ss_pred EEcCCCCCCeeeeEEEEEEeCCCC-CCC
Confidence 999986 8999999999998644 443
No 5
>3o0m_A HIT family protein; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, hydrola structural genomics; HET: AMP; 1.90A {Mycobacterium smegmatis str}
Probab=100.00 E-value=1.5e-34 Score=194.89 Aligned_cols=106 Identities=21% Similarity=0.222 Sum_probs=94.8
Q ss_pred CCccccccc-CCCceEEEECCcEEEEecCCCCCCeeEEEEecCccCCccCCCHhHHHHHHHHHHHHHHHHH-h-cCCCce
Q psy14209 1 MSFLSKIIF-KPNTWWFVTDNDVVAFPDIKPAAKHHTLVISKQHVLNAKVLTSEHKALVQWLEDLSAITYL-C-LMVIFH 77 (119)
Q Consensus 1 ~c~fc~ii~-e~~~~iv~e~~~~~a~~~~~p~~~gh~lViPk~H~~~~~~L~~~e~~~l~~~~~~~~~~~~-~-~~~~~~ 77 (119)
.|+||+|++ |.+.++||||+.++||+|++|.+|||+||+||+|+.++.+|+++++..+..+++.+.+.++ . +++++|
T Consensus 6 ~CiFC~i~~~e~~~~iv~e~~~~~af~d~~p~~pgh~lViPk~H~~~l~dl~~~~~~~l~~~~~~v~~~l~~~~~~~~~~ 85 (149)
T 3o0m_A 6 SCVFCAIVSGDAPAIRIYEDENFLGILDIRPFTRGHTLVIPKTHTVDLTDTPPETVAGMAAVGQRIARAARESGLHADGN 85 (149)
T ss_dssp TCHHHHHHTTSSCCCEEEECSSEEEEECSSCSSTTCEEEEESSCCCSTTTSCHHHHHHHHHHHHHHHHHHHHSTTCCSEE
T ss_pred CCccCccccCCCCCCEEEECCCEEEEEcCCCCCCCeEEEEechhhCCHhHCCHHHHHHHHHHHHHHHHHHHHcCCCCCce
Confidence 499999999 9999999999999999999999999999999999999999999998888877776555555 4 678899
Q ss_pred EEEEeCCC--CCccceeEEEEecCCCCCCCc
Q psy14209 78 RYGFHWPP--FYSIGHLHLHVIAPVSEMSFL 106 (119)
Q Consensus 78 ~~~~~~~~--~q~v~HlH~Hiip~~~~~~~~ 106 (119)
|+++|+++ ||+++|+|+|||||..+.+|+
T Consensus 86 ni~~n~g~~aGq~v~HlHiHiiPR~~~d~~~ 116 (149)
T 3o0m_A 86 NIAINDGKAAFQTVFHIHLHVVPRRNGDKLS 116 (149)
T ss_dssp EEECCCSGGGTCCSSSCCEEEEEECTTCCCC
T ss_pred EEEEecCCCCCCccceEEEEEECCccCCCcc
Confidence 99999986 899999999999987766664
No 6
>3ksv_A Uncharacterized protein; HIT family, structural genomics, structural genomics of PATH protozoa consortium, SGPP, unknown function; 1.90A {Leishmania major} SCOP: d.13.1.0
Probab=100.00 E-value=2.1e-34 Score=194.35 Aligned_cols=102 Identities=24% Similarity=0.186 Sum_probs=90.4
Q ss_pred CCccccccc-CCCceEEEECCcEEEEecCCCCCCeeEEEEecCccCCccCCCHhHHHHHHHHHHHHHHHHH-hcCCCceE
Q psy14209 1 MSFLSKIIF-KPNTWWFVTDNDVVAFPDIKPAAKHHTLVISKQHVLNAKVLTSEHKALVQWLEDLSAITYL-CLMVIFHR 78 (119)
Q Consensus 1 ~c~fc~ii~-e~~~~iv~e~~~~~a~~~~~p~~~gh~lViPk~H~~~~~~L~~~e~~~l~~~~~~~~~~~~-~~~~~~~~ 78 (119)
.|+||+|++ |.|+++|||||.++||+|++|.+|||+||+||+|+.++.+|+++++..+..+++.+.+.++ .+++++||
T Consensus 12 ~~iFc~Ii~geip~~iV~ed~~~~af~d~~P~~pgH~LViPk~H~~~l~dL~~~e~~~l~~~~~~v~~~l~~~~~~~g~n 91 (149)
T 3ksv_A 12 NCIFCKIIKGDIPCAKVAETSKALAFMDINPLSRGHMLVIPKEHASCLHELGMEDAADVGVLLAKASRAVAGPDGSMQYN 91 (149)
T ss_dssp TCHHHHHHHTSSCCCEEEECSSEEEEECSSCSSTTCEEEEESSCCSSGGGSCHHHHHHHHHHHHHHHHHHHCTTSCCEEE
T ss_pred cCHHHHHHcCCCCccEEEECCCEEEEECCCCCCCCEEEEEeChhhhhhhhCCHHHHHHHHHHHHHHHHHHHHhhCCCCEE
Confidence 599999999 9999999999999999999999999999999999999999999997777666655444444 56778999
Q ss_pred EEEeCCC--CCccceeEEEEecCCCC
Q psy14209 79 YGFHWPP--FYSIGHLHLHVIAPVSE 102 (119)
Q Consensus 79 ~~~~~~~--~q~v~HlH~Hiip~~~~ 102 (119)
+++|+|+ ||+++|+|+|||||..+
T Consensus 92 i~~n~g~~aGq~v~HlHiHiiPR~~~ 117 (149)
T 3ksv_A 92 VLQNNGSLAHQEVPHVHFHIIPKTDE 117 (149)
T ss_dssp EEECCSTTTTCCSSSCCEEEEEECCT
T ss_pred EEEecCcccCCCCCEEEEEEEecccC
Confidence 9999986 89999999999998654
No 7
>3lb5_A HIT-like protein involved in cell-cycle regulatio; niaid, seattle structural genomics center for infectious DIS ssgcid, histidine triad; 1.90A {Bartonella henselae}
Probab=100.00 E-value=5.9e-34 Score=194.33 Aligned_cols=106 Identities=25% Similarity=0.186 Sum_probs=93.4
Q ss_pred CCccccccc-CCCceEEEECCcEEEEecCCCCCCeeEEEEecCccCCccCCCHhHHHHHHHHHHHHHHHHH-hcCCCceE
Q psy14209 1 MSFLSKIIF-KPNTWWFVTDNDVVAFPDIKPAAKHHTLVISKQHVLNAKVLTSEHKALVQWLEDLSAITYL-CLMVIFHR 78 (119)
Q Consensus 1 ~c~fc~ii~-e~~~~iv~e~~~~~a~~~~~p~~~gh~lViPk~H~~~~~~L~~~e~~~l~~~~~~~~~~~~-~~~~~~~~ 78 (119)
.|+||+|++ |.+.++|||||.++||.|++|.+|||+||+||+|+.++.+|+++++..|..+++.+.+.++ .+++++||
T Consensus 29 ~CiFC~i~~~e~p~~iV~e~e~~~af~d~~P~~pgH~LViPk~H~~~l~dL~~ee~~~l~~~~~~v~~~l~~~~~~~g~n 108 (161)
T 3lb5_A 29 NNIFAKLIRNEIPSVRVYEDDDVIAFMDIMPQAPGHTLVIPKKGSRNLLDADTETLFPVIKAVQKIAKAVKKAFQADGIT 108 (161)
T ss_dssp TSHHHHHHTTSSCCCEEEECSSEEEEECSSCSSTTCEEEEESSCCSSTTTSCHHHHHHHHHHHHHHHHHHHHHHTCSEEE
T ss_pred CCcccccccCCCCccEEEECCCEEEEECCCcCCCcEEEEEEeeccchhhhCCHHHHHHHHHHHHHHHHHHHHhcCCCCEE
Confidence 499999999 9999999999999999999999999999999999999999999998877777765444444 67889999
Q ss_pred EEEeCCC--CCccceeEEEEecCCCCCCCc
Q psy14209 79 YGFHWPP--FYSIGHLHLHVIAPVSEMSFL 106 (119)
Q Consensus 79 ~~~~~~~--~q~v~HlH~Hiip~~~~~~~~ 106 (119)
+++|+++ ||+++|+|+|||||..+.+++
T Consensus 109 i~~n~g~~aGq~V~HlHiHiiPR~~~d~~~ 138 (161)
T 3lb5_A 109 VMQFNEAASQQTVYHLHFHIIPRMEGIELT 138 (161)
T ss_dssp EEEEESGGGTCCSCSCCEEEEEECTTCCC-
T ss_pred EEEecCcccCCCCCEEEEEEEcccCCCCCC
Confidence 9999986 899999999999986655443
No 8
>1xqu_A HIT family hydrolase; protein STRU initiative, PSI, southeast collaboratory for structural GEN secsg; 2.30A {Clostridium thermocellum} SCOP: d.13.1.1
Probab=100.00 E-value=5.1e-34 Score=192.09 Aligned_cols=101 Identities=25% Similarity=0.253 Sum_probs=94.4
Q ss_pred CCccccccc-CCCceEEEECCcEEEEecCCCCCCeeEEEEecCccCCccCCCHhHHHHHHHHHHHHHHHHHhcC--CCce
Q psy14209 1 MSFLSKIIF-KPNTWWFVTDNDVVAFPDIKPAAKHHTLVISKQHVLNAKVLTSEHKALVQWLEDLSAITYLCLM--VIFH 77 (119)
Q Consensus 1 ~c~fc~ii~-e~~~~iv~e~~~~~a~~~~~p~~~gh~lViPk~H~~~~~~L~~~e~~~l~~~~~~~~~~~~~~~--~~~~ 77 (119)
.|+||+|++ |.+.++|||||.++||.|++|.+|||+||+||+|+.++.+|+++|..++++++++++++++.++ +++|
T Consensus 36 ~CiFC~ii~~e~~~~iV~e~e~~~af~d~~P~~pgH~LViPkrHv~~l~dL~~~e~~~l~~l~~~~~~v~~~~~~~~~gy 115 (147)
T 1xqu_A 36 NCVFCKIIKRELPSTIYYEDERVIAIKDINPAAPVHVLIIPKEHIANVKEINESNAQILIDIHKAANKVAEDLGIAEKGY 115 (147)
T ss_dssp TCHHHHHHTTSSCBCEEEECSSEEEEECSSCSSSEEEEEEESSCCSSGGGCCTTTTTHHHHHHHHHHHHHHHTTCTTTCE
T ss_pred CCcccccccCCCCcEEEEECCcEEEEEecCCCCccEEEEEeCcccCChhHCCHHHHHHHHHHHHHHHHHHHHhCCCCCCE
Confidence 399999999 8999999999999999999999999999999999999999999999999999999999999665 5699
Q ss_pred EEEEeCCC--CCccceeEEEEecCCC
Q psy14209 78 RYGFHWPP--FYSIGHLHLHVIAPVS 101 (119)
Q Consensus 78 ~~~~~~~~--~q~v~HlH~Hiip~~~ 101 (119)
|+++|+|+ ||+++|+|+|||||++
T Consensus 116 ni~~n~g~~aGq~v~HlHlHiiP~~~ 141 (147)
T 1xqu_A 116 RLITNCGVAAGQTVFHLHYHLLGGVD 141 (147)
T ss_dssp EEECCCSTTTTCCSCSCCEEEEESSC
T ss_pred EEEEecCcccCCCccEEEEEEeCCCc
Confidence 99999986 7999999999998754
No 9
>3imi_A HIT family protein; structural genomics, infectious diseases for structural genomics of infectious diseases, unknown FUN csgid; 2.01A {Bacillus anthracis str} SCOP: d.13.1.1
Probab=100.00 E-value=8.2e-34 Score=190.88 Aligned_cols=105 Identities=26% Similarity=0.167 Sum_probs=92.7
Q ss_pred CCccccccc-CCCceEEEECCcEEEEecCCCCCCeeEEEEecCccCCccCCCHhHHHHHHHHHHHHHHHHH-hcCCCceE
Q psy14209 1 MSFLSKIIF-KPNTWWFVTDNDVVAFPDIKPAAKHHTLVISKQHVLNAKVLTSEHKALVQWLEDLSAITYL-CLMVIFHR 78 (119)
Q Consensus 1 ~c~fc~ii~-e~~~~iv~e~~~~~a~~~~~p~~~gh~lViPk~H~~~~~~L~~~e~~~l~~~~~~~~~~~~-~~~~~~~~ 78 (119)
.|+||+|++ |.+.++||||+.++||.|++|.+|||+||+||+|+.++.+|+++++..|..+++.+.+.++ .+++++||
T Consensus 10 ~CifC~i~~~e~~~~iV~e~~~~~a~~d~~p~~pgh~lViPk~H~~~l~dL~~~e~~~l~~~~~~v~~~l~~~~~~~~~n 89 (147)
T 3imi_A 10 NCIFCKIIDGQILCSKVYEDEHVLAFLDISQVTKGHTLVIPKVHKQDIFALTPEIASHIFSVVPKIANAIKAEFNPVGFN 89 (147)
T ss_dssp GCHHHHHHTTSSCCCEEEECSSEEEEECTTCSSTTCEEEEESSCCCSGGGCCHHHHHHHHHTHHHHHHHHHHHHCCSEEE
T ss_pred CCcCcccccCCCcCCEEEECCCEEEEEcCCCCCCcEEEEEEeeccCChhhCCHHHHHHHHHHHHHHHHHHHHhcCCCCEE
Confidence 399999999 9999999999999999999999999999999999999999999998877777665444444 67889999
Q ss_pred EEEeCCC--CCccceeEEEEecCCC-CCCC
Q psy14209 79 YGFHWPP--FYSIGHLHLHVIAPVS-EMSF 105 (119)
Q Consensus 79 ~~~~~~~--~q~v~HlH~Hiip~~~-~~~~ 105 (119)
+++|+|+ ||+++|+|+|||||.. +.+|
T Consensus 90 i~~n~g~~aGq~v~HlHiHiiPR~~~~~~~ 119 (147)
T 3imi_A 90 LLNNNGEKAGQTVFHFHLHLIPRYGENDGF 119 (147)
T ss_dssp EEEEESGGGTCCSSSCCEEEEEECSTTCSE
T ss_pred EEEeCCcccCCCcCEEEEEEeCCccCCCCc
Confidence 9999986 9999999999999866 4444
No 10
>3l7x_A SMU.412C, putative HIT-like protein involved in cell-cycle regulation; 1.70A {Streptococcus mutans}
Probab=100.00 E-value=2.8e-33 Score=192.89 Aligned_cols=105 Identities=27% Similarity=0.183 Sum_probs=92.7
Q ss_pred CCccccccc-CCCceEEEECCcEEEEecCCCCCCeeEEEEecCccCCccCCCHhHHHHHHHHHHHHHHHH-HhcCCCceE
Q psy14209 1 MSFLSKIIF-KPNTWWFVTDNDVVAFPDIKPAAKHHTLVISKQHVLNAKVLTSEHKALVQWLEDLSAITY-LCLMVIFHR 78 (119)
Q Consensus 1 ~c~fc~ii~-e~~~~iv~e~~~~~a~~~~~p~~~gh~lViPk~H~~~~~~L~~~e~~~l~~~~~~~~~~~-~~~~~~~~~ 78 (119)
.|+||+|++ |.+.++||||+.++||+|++|.+|||+||+||+|+.++.+|+++++..|..+++.+.+.+ +.+++++||
T Consensus 37 ~CiFC~Ii~~e~p~~iV~e~e~~~afld~~P~~pgH~LVIPkrHv~~l~dL~~ee~~~L~~~~~~v~~~l~~~~~~~g~n 116 (173)
T 3l7x_A 37 DCLFCKIVAGDIPSSKVYEDEDVLAFLDISQATKGHTLVIPKEHVRNALEMTQTQAANLFARIPKIARALQKATKADGLN 116 (173)
T ss_dssp TCHHHHHHHTSSCCCEEEECSSEEEEECTTCSSTTCEEEEESSCCSCGGGCCHHHHHHHHHTHHHHHHHHHHHHTCSEEE
T ss_pred CCcccccccCCCCceEEEECCCEEEEEcCCCCCCcEEEEEeccccCChhhCCHHHHHHHHHHHHHHHHHHHHhcCCCCEE
Confidence 499999999 999999999999999999999999999999999999999999999887777766544444 467889999
Q ss_pred EEEeCCC--CCccceeEEEEecCCC-CCCC
Q psy14209 79 YGFHWPP--FYSIGHLHLHVIAPVS-EMSF 105 (119)
Q Consensus 79 ~~~~~~~--~q~v~HlH~Hiip~~~-~~~~ 105 (119)
+++|+|+ ||+++|+|+|||||.. +.+|
T Consensus 117 i~~n~g~~aGq~V~HlHiHiIPR~~~d~gf 146 (173)
T 3l7x_A 117 IINNNEETAGQTVFHAHVHLVPRFADSDEF 146 (173)
T ss_dssp EEECCSGGGTCCSCSCCEEEEEECC-CCSC
T ss_pred EEEecCcccCCCcCEEEEEEEecccCCCCc
Confidence 9999986 8999999999999866 4444
No 11
>2eo4_A 150AA long hypothetical histidine triad nucleotid protein; HIT family, structural genomics, NPPSFA; 1.80A {Sulfolobus tokodaii}
Probab=100.00 E-value=9e-33 Score=185.98 Aligned_cols=102 Identities=23% Similarity=0.168 Sum_probs=91.6
Q ss_pred Cccccccc-CCCceEEEECCcEEEEecCCCCCCeeEEEEecCccCCccCCCHhHHHHHHHHHHHHHHHHH-hcCCCceEE
Q psy14209 2 SFLSKIIF-KPNTWWFVTDNDVVAFPDIKPAAKHHTLVISKQHVLNAKVLTSEHKALVQWLEDLSAITYL-CLMVIFHRY 79 (119)
Q Consensus 2 c~fc~ii~-e~~~~iv~e~~~~~a~~~~~p~~~gh~lViPk~H~~~~~~L~~~e~~~l~~~~~~~~~~~~-~~~~~~~~~ 79 (119)
|+||+|++ |.+.++|+||+.++||+|++|.+|||+||+||+|+.++.+|+++++..|..+++.+.+.++ .+++++||+
T Consensus 1 CiFC~i~~~e~~~~iv~e~~~~~a~~d~~p~~pgh~lViPk~H~~~~~dL~~~e~~~l~~~~~~v~~~l~~~~~~~~~ni 80 (149)
T 2eo4_A 1 CTFCSIINRELEGYFVYEDEKFAAILDKYPVSLGHTLVIPKKHFENYLEADEDTLAELAKVVKLVSLGIKDAVKADGLRL 80 (149)
T ss_dssp CHHHHHHTTSSCCCEEEECSSEEEEECSSCSSTTCEEEEESSCCSSGGGSCHHHHHHHHHHHHHHHHHHHHHTTCSEEEE
T ss_pred CcCcccccCCCCccEEEECCCEEEEECCCCCCCCeEEEEechhhCCHhHCCHHHHHHHHHHHHHHHHHHHHhcCCCCeEE
Confidence 99999999 9999999999999999999999999999999999999999999998888777765544444 677889999
Q ss_pred EEeCCC--CCccceeEEEEecCCCCC
Q psy14209 80 GFHWPP--FYSIGHLHLHVIAPVSEM 103 (119)
Q Consensus 80 ~~~~~~--~q~v~HlH~Hiip~~~~~ 103 (119)
++|+|+ ||+++|+|+|||||..+.
T Consensus 81 ~~n~g~~~gq~v~HlHiHviPr~~~d 106 (149)
T 2eo4_A 81 LTNIGRSAGQVIFHLHVHIIPTWEGD 106 (149)
T ss_dssp ECCCSGGGTCCSCSCCEEEEEECSSC
T ss_pred EEecCcCCCCCcCEEEEEEECCcCCC
Confidence 999986 899999999999986543
No 12
>3r6f_A HIT family protein; structural genomics, seattle structural genomics center for infectious disease, ssgcid, protozoan parasite; 1.85A {Encephalitozoon cuniculi}
Probab=100.00 E-value=2.5e-33 Score=186.15 Aligned_cols=98 Identities=19% Similarity=0.071 Sum_probs=87.7
Q ss_pred CCcccccccCCCceEEEECCcEEEEecCCCCCCeeEEEEecCccCCccCCCHhHHHHHHHHHHHHHHHHHhcCCCceEEE
Q psy14209 1 MSFLSKIIFKPNTWWFVTDNDVVAFPDIKPAAKHHTLVISKQHVLNAKVLTSEHKALVQWLEDLSAITYLCLMVIFHRYG 80 (119)
Q Consensus 1 ~c~fc~ii~e~~~~iv~e~~~~~a~~~~~p~~~gh~lViPk~H~~~~~~L~~~e~~~l~~~~~~~~~~~~~~~~~~~~~~ 80 (119)
.|+||+|++ .+.++|||||.++||.|++|.+|||+||+||+|+.++.+|+++++ .+++..++++.+.++.++||++
T Consensus 7 ~C~fC~i~~-~~~~iv~e~~~~~af~d~~p~~pgh~lViPk~H~~~l~dL~~~~~---~~l~~~~~~v~~~~~~~~~ni~ 82 (135)
T 3r6f_A 7 GCIFCTLYR-KGANIIYETDRLFALIDRYPLSKGHFLVIPKAHHPYLHNYKPEEL---SGVLDTIRHLVQKFGFERYNIL 82 (135)
T ss_dssp CCHHHHHHH-HCCSCCEECSSEEEEECSSCSSTTCEEEEESSCCSSGGGSCGGGG---TTHHHHHHHHHHHHTCCSEEEE
T ss_pred CCcCccccc-CCceEEEECCCEEEEECCCCCCCCeEEEEEhhHhCCHhHCCHHHH---HHHHHHHHHHHHHhCCCCeEEE
Confidence 499999999 778999999999999999999999999999999999999999985 4445556677777788899999
Q ss_pred EeCCCCCccceeEEEEecCCCC
Q psy14209 81 FHWPPFYSIGHLHLHVIAPVSE 102 (119)
Q Consensus 81 ~~~~~~q~v~HlH~Hiip~~~~ 102 (119)
+|+++||+++|+|+|||||..+
T Consensus 83 ~n~g~gq~v~HlH~HiiPR~~~ 104 (135)
T 3r6f_A 83 QNNGNHQEVFHVHFHVIPFVSA 104 (135)
T ss_dssp CCSSSSCSSSSCCEEEEECCBT
T ss_pred EEcCCCCCccEEEEEEeccccC
Confidence 9998899999999999998643
No 13
>1y23_A HIT, histidine triad protein; HIT protein, PKCI-1, cell-cycle regulation, NYSGXRC, structural genomics, protein structure initiative; 2.30A {Bacillus subtilis} SCOP: d.13.1.1
Probab=99.98 E-value=1.2e-32 Score=184.37 Aligned_cols=102 Identities=26% Similarity=0.161 Sum_probs=91.2
Q ss_pred CCccccccc-CCCceEEEECCcEEEEecCCCCCCeeEEEEecCccCCccCCCHhHHHHHHHHHHHHHHHHH-hcCCCceE
Q psy14209 1 MSFLSKIIF-KPNTWWFVTDNDVVAFPDIKPAAKHHTLVISKQHVLNAKVLTSEHKALVQWLEDLSAITYL-CLMVIFHR 78 (119)
Q Consensus 1 ~c~fc~ii~-e~~~~iv~e~~~~~a~~~~~p~~~gh~lViPk~H~~~~~~L~~~e~~~l~~~~~~~~~~~~-~~~~~~~~ 78 (119)
.|+||+|++ |.+.++||||+.++||.|.+|.+|||+||+||+|+.++.+|+++++..|..+++.+.+.++ .+++++|+
T Consensus 6 ~C~fC~i~~~e~~~~iv~e~~~~~a~~~~~p~~pgh~LViPk~h~~~l~dL~~~~~~~l~~~~~~v~~~l~~~~~~~~~n 85 (145)
T 1y23_A 6 NCIFCKIIAGDIPSAKVYEDEHVLAFLDISQVTKGHTLVIPKTHIENVYEFTDELAKQYFHAVPKIARAIRDEFEPIGLN 85 (145)
T ss_dssp CCHHHHHHHTSSCCCEEEECSSEEEEECTTCSSTTCEEEEESSCCSSGGGCCHHHHHTTTTHHHHHHHHHHHHHCCSEEE
T ss_pred CCcCCccccCCCCCCEEEECCCEEEEECCCCCCCCeEEEEEhhhhhhHHhCCHHHHHHHHHHHHHHHHHHHHhcCCCCEE
Confidence 499999999 8999999999999999999999999999999999999999999998877777665444444 67888999
Q ss_pred EEEeCCC--CCccceeEEEEecCCCC
Q psy14209 79 YGFHWPP--FYSIGHLHLHVIAPVSE 102 (119)
Q Consensus 79 ~~~~~~~--~q~v~HlH~Hiip~~~~ 102 (119)
+++|+|+ ||+++|+|+|||||..+
T Consensus 86 i~~n~g~~~g~~v~HlH~HiiPr~~~ 111 (145)
T 1y23_A 86 TLNNNGEKAGQSVFHYHMHIIPRYGK 111 (145)
T ss_dssp EEEEESGGGTCCSSSCCEEEEEECST
T ss_pred EEEcCCcCCCCCcCEEEEEEEccccC
Confidence 9999986 89999999999998654
No 14
>3p0t_A Uncharacterized protein; ssgcid, HIT-like protein, mycobacerium paratuberculosis, STR genomics; 1.90A {Mycobacterium avium subsp}
Probab=99.97 E-value=7.5e-32 Score=179.42 Aligned_cols=98 Identities=27% Similarity=0.292 Sum_probs=84.8
Q ss_pred CCccccccc-CCCceEEEECCcEEEEecCCCCCCeeEEEEecCccCCccCCCHhHHHHHHHHHHHHHHHHH-hcCCCceE
Q psy14209 1 MSFLSKIIF-KPNTWWFVTDNDVVAFPDIKPAAKHHTLVISKQHVLNAKVLTSEHKALVQWLEDLSAITYL-CLMVIFHR 78 (119)
Q Consensus 1 ~c~fc~ii~-e~~~~iv~e~~~~~a~~~~~p~~~gh~lViPk~H~~~~~~L~~~e~~~l~~~~~~~~~~~~-~~~~~~~~ 78 (119)
.|+||+|++ |.++++||||+.++||.|++|.+|||+||+||+|+.++.+|+++++..+..+++.+.+.++ .++..+++
T Consensus 6 ~CiFC~i~~~e~p~~iV~e~~~~~af~d~~P~~pgH~LViPk~H~~~l~dL~~~e~~~l~~~~~~v~~~l~~~~~~~~~n 85 (138)
T 3p0t_A 6 ASIFTKIINRELPGRFVYEDDDVVAFLTIEPMTQGHTLVVPREEIDNWQDVDSAAFNRVMGVSQLIGKAVCKAFRTERSG 85 (138)
T ss_dssp HHHHHHHHTTSSCCCEEEECSSEEEEECSSCSSTTCEEEEESSCCCCGGGSCHHHHHHHHHHHHHHHHHHHHHHTCSEEE
T ss_pred CChhhHHhcCCCCcCEEEeCCCEEEEecCCCCCCcEEEEEEhHHhCchhhCCHHHHHHHHHHHHHHHHHHHHhcCCCCCc
Confidence 399999999 9999999999999999999999999999999999999999999998777777665444443 67777666
Q ss_pred EEEeCCCCCccceeEEEEecCCC
Q psy14209 79 YGFHWPPFYSIGHLHLHVIAPVS 101 (119)
Q Consensus 79 ~~~~~~~~q~v~HlH~Hiip~~~ 101 (119)
+.. +||+|+|+|+|||||..
T Consensus 86 ~~~---~gq~v~HlH~HiiPr~~ 105 (138)
T 3p0t_A 86 LII---AGLEVPHLHVHVFPTRS 105 (138)
T ss_dssp EEE---CCSSCSSCCEEEEEESC
T ss_pred EEE---CCcccCEEEEEEecccc
Confidence 542 68999999999999865
No 15
>3ano_A AP-4-A phosphorylase; diadenosine polyphosphate, HIT transferase; HET: PG4; 1.89A {Mycobacterium tuberculosis}
Probab=99.97 E-value=1.4e-30 Score=184.96 Aligned_cols=102 Identities=17% Similarity=0.091 Sum_probs=93.5
Q ss_pred CCccccccc-C-CCceEEEECCcEEEEecCCCCCCeeEEEEecCccCCccCCCHhHHHHHHHHHHHHHHHHH-hcCCCce
Q psy14209 1 MSFLSKIIF-K-PNTWWFVTDNDVVAFPDIKPAAKHHTLVISKQHVLNAKVLTSEHKALVQWLEDLSAITYL-CLMVIFH 77 (119)
Q Consensus 1 ~c~fc~ii~-e-~~~~iv~e~~~~~a~~~~~p~~~gh~lViPk~H~~~~~~L~~~e~~~l~~~~~~~~~~~~-~~~~~~~ 77 (119)
.|+||+|++ | .+.++||||+.++||+|++|.+|||+||+||+|+.++.+|+++++.+|..+++.+.++++ .+++++|
T Consensus 70 ~CiFC~i~~~e~~~~~iV~edd~~~afld~~P~~pGH~LVIPkrHv~~l~dL~~ee~~~L~~l~~~v~~~l~~~~~~~g~ 149 (218)
T 3ano_A 70 AQPFTEIPQLSDEEGLVVARGKLVYAVLNLYPYNPGHLMVVPYRRVSELEDLTDLESAELMAFTQKAIRVIKNVSRPHGF 149 (218)
T ss_dssp CCHHHHGGGSCHHHHTEEEECSSEEEEECSSCSSTTCEEEEESSCCCCGGGSCHHHHHHHHHHHHHHHHHHHHHCCCSEE
T ss_pred CCcCcccccCCCCCceEEEECCcEEEEEccCCCCCcEEEEEechhhCChhhCCHHHHHHHHHHHHHHHHHHHHhcCCCCE
Confidence 399999998 5 688999999999999999999999999999999999999999999999999998777777 6778899
Q ss_pred EEEEeCCC--CCcc-ceeEEEEecCCCC
Q psy14209 78 RYGFHWPP--FYSI-GHLHLHVIAPVSE 102 (119)
Q Consensus 78 ~~~~~~~~--~q~v-~HlH~Hiip~~~~ 102 (119)
|+++|+|+ ||++ +|+|+|||||...
T Consensus 150 ni~~n~G~~aGq~V~~HlHiHIIPR~~g 177 (218)
T 3ano_A 150 NVGLNLGTSAGGSLAEHLHVHVVPRWGG 177 (218)
T ss_dssp EEEEEESGGGTCTTTTSCCEEEEEECTT
T ss_pred EEEEecCcccCCcccCEEEEEEEcccCC
Confidence 99999986 8999 9999999998554
No 16
>2oik_A Histidine triad (HIT) protein; HIT-like fold, structural genomics, joint center for structu genomics, JCSG; HET: MSE; 1.65A {Methylobacillus flagellatus} SCOP: d.13.1.1
Probab=99.96 E-value=1.6e-28 Score=166.00 Aligned_cols=96 Identities=13% Similarity=-0.045 Sum_probs=83.6
Q ss_pred CCcccccccCCCceEEEECCcEEEEecCCCCCCeeEEEEecCccCCccCCCHhHHHHHHHHHHHHHHHHH-hcCCCceEE
Q psy14209 1 MSFLSKIIFKPNTWWFVTDNDVVAFPDIKPAAKHHTLVISKQHVLNAKVLTSEHKALVQWLEDLSAITYL-CLMVIFHRY 79 (119)
Q Consensus 1 ~c~fc~ii~e~~~~iv~e~~~~~a~~~~~p~~~gh~lViPk~H~~~~~~L~~~e~~~l~~~~~~~~~~~~-~~~~~~~~~ 79 (119)
.|+||++ .+.++||||+.++||.|++|.+|||+||+||+|+.++.+|+++++..|..+++.+.+.++ .+++++||+
T Consensus 11 ~C~FC~~---~~~~iv~e~~~~~a~~d~~p~~pgh~LViPk~H~~~l~dL~~~~~~~l~~~~~~v~~~l~~~~~~~g~ni 87 (154)
T 2oik_A 11 NCELCTT---AGGEILWQDALCRVVHVENQDYPGFCRVILNRHVKEMSDLRPAERDHLMLVVFAVEEAVREVMRPDKINL 87 (154)
T ss_dssp TCHHHHS---CCSEEEEECSSEEEEECCCTTCTTCEEEEESSCCSCGGGSCHHHHHHHHHHHHHHHHHHHHHHCCSEEEE
T ss_pred CCccCCC---CCCeEEEECCcEEEEEcCCCCCCeEEEEEecCCcCChHHCCHHHHHHHHHHHHHHHHHHHHHhCCCcEEh
Confidence 4999984 467999999999999999999999999999999999999999998888887776555555 677888888
Q ss_pred EEeCCCCCccceeEEEEecCCCC
Q psy14209 80 GFHWPPFYSIGHLHLHVIAPVSE 102 (119)
Q Consensus 80 ~~~~~~~q~v~HlH~Hiip~~~~ 102 (119)
+ ..||+++|+|+|||||..+
T Consensus 88 ~---~~gq~v~HlHiHiiPr~~~ 107 (154)
T 2oik_A 88 A---SLGNMTPHVHWHVIPRFKR 107 (154)
T ss_dssp E---ECCSSSCSCEEEEEEECTT
T ss_pred H---HhCCCCCEEEEEEeCCCCC
Confidence 7 3589999999999998654
No 17
>1fit_A FragIle histidine protein; FHIT, fragIle histidine triad protein, putative human tumor suppressor, advanced photon source, APS; HET: FRU; 1.85A {Homo sapiens} SCOP: d.13.1.1 PDB: 1fhi_A* 2fit_A* 3fit_A* 4fit_A 5fit_A* 6fit_A* 2fhi_A*
Probab=99.95 E-value=7.3e-28 Score=161.61 Aligned_cols=92 Identities=16% Similarity=0.114 Sum_probs=81.0
Q ss_pred CceEEEECCcEEEEecCCCCCCeeEEEEecCccCCccCCCHhHHHHHHHHHHHHHHHHH-hcCCCceEEEEeCCC--CCc
Q psy14209 12 NTWWFVTDNDVVAFPDIKPAAKHHTLVISKQHVLNAKVLTSEHKALVQWLEDLSAITYL-CLMVIFHRYGFHWPP--FYS 88 (119)
Q Consensus 12 ~~~iv~e~~~~~a~~~~~p~~~gh~lViPk~H~~~~~~L~~~e~~~l~~~~~~~~~~~~-~~~~~~~~~~~~~~~--~q~ 88 (119)
+.++||||+.++||+|++|.+|||+||+||+|+.++.+|+++++..+..+++.+.+.++ .+++++||+++|+|+ ||+
T Consensus 12 ~~~iv~e~~~~~a~~d~~p~~pgh~LViPk~h~~~~~dL~~~e~~~l~~~~~~v~~~l~~~~~~~~~ni~~n~g~~agq~ 91 (147)
T 1fit_A 12 PSVVFLKTELSFALVNRKPVVPGHVLVCPLRPVERFHDLRPDEVADLFQTTQRVGTVVEKHFHGTSLTFSMQDGPEAGQT 91 (147)
T ss_dssp GGGEEEECSSEEEEECSSCSSTTCEEEEESSCCSSGGGSCHHHHHHHHHHHHHHHHHHHHHTTCSEEEEEECCSGGGTCC
T ss_pred CcEEEEECCCEEEEECCCCCCCcEEEEEEccccCChhhCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEecCCccCCC
Confidence 47899999999999999999999999999999999999999998777777765544444 677889999999986 899
Q ss_pred cceeEEEEecCCCCC
Q psy14209 89 IGHLHLHVIAPVSEM 103 (119)
Q Consensus 89 v~HlH~Hiip~~~~~ 103 (119)
++|+|+|||||..+.
T Consensus 92 v~HlH~HiiPr~~~d 106 (147)
T 1fit_A 92 VKHVHVHVLPRKAGD 106 (147)
T ss_dssp SSSCCEEEEEECTTC
T ss_pred ccEEEEEEECCcCCC
Confidence 999999999976543
No 18
>1z84_A Galactose-1-phosphate uridyl transferase-like protein; GALT, zinc, AMP, structural genomics, protein structure initiative, CESG; HET: AMP; 1.83A {Arabidopsis thaliana} SCOP: d.13.1.2 d.13.1.2 PDB: 1zwj_A 2q4h_A* 2q4l_A 2h39_A*
Probab=99.94 E-value=1.6e-26 Score=174.17 Aligned_cols=99 Identities=15% Similarity=0.073 Sum_probs=89.3
Q ss_pred CCccccccc-CCCceEEEECCcEEEEecCCCCCCeeEEEEecCccCCccCCCHhHHHHHHHHHHHH-HHHHHhcCCCceE
Q psy14209 1 MSFLSKIIF-KPNTWWFVTDNDVVAFPDIKPAAKHHTLVISKQHVLNAKVLTSEHKALVQWLEDLS-AITYLCLMVIFHR 78 (119)
Q Consensus 1 ~c~fc~ii~-e~~~~iv~e~~~~~a~~~~~p~~~gh~lViPk~H~~~~~~L~~~e~~~l~~~~~~~-~~~~~~~~~~~~~ 78 (119)
.|+||+|++ |. +|+|||.++||+|++|.+|||+||+||+|+.++.+|+++++..|+.+++.+ +++.+.++.++||
T Consensus 215 ~ciFc~ii~~E~---iV~E~e~~~af~~~~p~~P~h~lViPk~Hv~~l~dl~~~e~~~La~~l~~v~~~l~~~~~~~~yn 291 (351)
T 1z84_A 215 KCCLCEAKSKHF---VIDESSHFVSVAPFAATYPFEIWIIPKDHSSHFHHLDDVKAVDLGGLLKLMLQKIAKQLNDPPYN 291 (351)
T ss_dssp SCTTTTHHHHSE---EEEECSSEEEEECTTCSSTTCEEEEESSCCSCGGGCCHHHHHHHHHHHHHHHHHHHHHTTSCCEE
T ss_pred CCHHHHHHhcCe---EEecCCcEEEEeccCCCCCeEEEEEeccccCChHHCCHHHHHHHHHHHHHHHHHHHHhcCCCCEE
Confidence 499999999 87 999999999999999999999999999999999999999999999988854 5555577778999
Q ss_pred EEEeCCC--C----CccceeEEEEecCCCC
Q psy14209 79 YGFHWPP--F----YSIGHLHLHVIAPVSE 102 (119)
Q Consensus 79 ~~~~~~~--~----q~v~HlH~Hiip~~~~ 102 (119)
+++|.++ | |+++|+|+||+||.+.
T Consensus 292 ~~~n~gp~~g~~~~q~v~HlHiHiiPR~~~ 321 (351)
T 1z84_A 292 YMIHTSPLKVTESQLPYTHWFLQIVPQLSG 321 (351)
T ss_dssp EEEECCCTTCCGGGGGGCCCEEEEEECCCC
T ss_pred EEEeCCCccCCCCCCccceEEEEEEccCCC
Confidence 9999986 4 7999999999998654
No 19
>1gup_A Galactose-1-phosphate uridylyltransferase; nucleotidyltransferase, galactose metabolism; HET: GDU; 1.80A {Escherichia coli} SCOP: d.13.1.2 d.13.1.2 PDB: 1guq_A* 1hxq_A* 1hxp_A*
Probab=99.94 E-value=1.2e-26 Score=174.60 Aligned_cols=98 Identities=18% Similarity=0.111 Sum_probs=87.2
Q ss_pred CCccccccc-CCCc--eEEEECCcEEEEecCCCCCCeeEEEEecCccCCccCCCHhHHHHHHHHHHH-HHHHHHhcCCC-
Q psy14209 1 MSFLSKIIF-KPNT--WWFVTDNDVVAFPDIKPAAKHHTLVISKQHVLNAKVLTSEHKALVQWLEDL-SAITYLCLMVI- 75 (119)
Q Consensus 1 ~c~fc~ii~-e~~~--~iv~e~~~~~a~~~~~p~~~gh~lViPk~H~~~~~~L~~~e~~~l~~~~~~-~~~~~~~~~~~- 75 (119)
.|+||+|++ |.+. ++|+||+.++||+|++|.+|||+||+||+|+.++.+|+++++..|+.+++. ++++.+.++.+
T Consensus 195 ~Cifc~ii~~E~~~~~~iV~E~e~~~af~~~~p~~pgh~lViPK~Hv~~l~dL~~~e~~~La~~l~~v~~~l~~~~~~~~ 274 (348)
T 1gup_A 195 SPMLVDYVQRELADGSRTVVETEHWLAVVPYWAAWPFETLLLPKAHVLRITDLTDAQRSDLALALKKLTSRYDNLFQCSF 274 (348)
T ss_dssp SCHHHHHHHHHHHHCTTEEEECSSEEEECCTTCCSTTCEEEEESSCCSSGGGCCHHHHHHHHHHHHHHHHHHHHHHTSCC
T ss_pred CCchhHHHhhccccCceEEEeCCcEEEEEccCCCCceEEEEEeCcccCChHHCCHHHHHHHHHHHHHHHHHHHHHhCCCC
Confidence 499999998 7654 999999999999999999999999999999999999999999988888764 44444567775
Q ss_pred ceEEEEeCCC----CCccceeEEEEec
Q psy14209 76 FHRYGFHWPP----FYSIGHLHLHVIA 98 (119)
Q Consensus 76 ~~~~~~~~~~----~q~v~HlH~Hiip 98 (119)
+||+|+|.++ +|+++|+|+||+|
T Consensus 275 ~Yn~g~~~~p~~g~~q~v~HlHiHiiP 301 (348)
T 1gup_A 275 PYSMGWHGAPFNGEENQHWQLHAHFYP 301 (348)
T ss_dssp CEEEEEECCCSSSSCCTTCCCEEEEEC
T ss_pred CeEEEEEeCCCCCCCCcccEEEEEEec
Confidence 9999999875 3899999999999
No 20
>1ems_A Nitfhit, NIT-fragIle histidine triad fusion protein; WORM, nitrilase, nucleotide-binding protein, cancer; 2.80A {Caenorhabditis elegans} SCOP: d.13.1.1 d.160.1.1
Probab=99.93 E-value=4.6e-26 Score=175.25 Aligned_cols=100 Identities=17% Similarity=0.148 Sum_probs=86.5
Q ss_pred CCcccccccCCCc-eEEEECCcEEEEecCCCCCCeeEEEEecCccCCccCCCHhHHHHHHHHHHHHHHHHH-hcCCCceE
Q psy14209 1 MSFLSKIIFKPNT-WWFVTDNDVVAFPDIKPAAKHHTLVISKQHVLNAKVLTSEHKALVQWLEDLSAITYL-CLMVIFHR 78 (119)
Q Consensus 1 ~c~fc~ii~e~~~-~iv~e~~~~~a~~~~~p~~~gh~lViPk~H~~~~~~L~~~e~~~l~~~~~~~~~~~~-~~~~~~~~ 78 (119)
.|+||+ .|.+. ++||||+.++||.|++|.+|||+||+||+|+.++.+|+++++..|..+++.+.+.++ .+++++||
T Consensus 298 ~c~fc~--~e~p~~~iv~e~~~~~a~~~~~p~~pgh~lviPk~h~~~~~~l~~~~~~~l~~~~~~v~~~l~~~~~~~~~n 375 (440)
T 1ems_A 298 GLKFAR--FNIPADHIFYSTPHSFVFVNLKPVTDGHVLVSPKRVVPRLTDLTDAETADLFIVAKKVQAMLEKHHNVTSTT 375 (440)
T ss_dssp CCEETT--EECCGGGEEEECSSEEEEECSSCSSTTCEEEEESSCCSCGGGSCHHHHHHHHHHHHHHHHHHHHHTTCSEEE
T ss_pred ceeeec--cccCCceEEEECCCEEEEEcCCcCCCCeEEEEEccccCChhHCCHHHHHHHHHHHHHHHHHHHhhcCCCCeE
Confidence 499998 55554 799999999999999999999999999999999999999998777777665444444 67788999
Q ss_pred EEEeCCC--CCccceeEEEEecCCCC
Q psy14209 79 YGFHWPP--FYSIGHLHLHVIAPVSE 102 (119)
Q Consensus 79 ~~~~~~~--~q~v~HlH~Hiip~~~~ 102 (119)
+++|+|+ ||+++|+|+|||||...
T Consensus 376 ~~~~~g~~~gq~v~HlH~Hiipr~~~ 401 (440)
T 1ems_A 376 ICVQDGKDAGQTVPHVHIHILPRRAG 401 (440)
T ss_dssp EECCCSGGGTCCSSSCCEEEEEECSS
T ss_pred EEEecCCCCCCCccEEEEEEeCCCCC
Confidence 9999986 89999999999997554
No 21
>3ohe_A Histidine triad (HIT) protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-biology; HET: MSE; 1.20A {Marinobacter aquaeolei}
Probab=99.90 E-value=1.2e-23 Score=139.78 Aligned_cols=91 Identities=13% Similarity=-0.073 Sum_probs=76.9
Q ss_pred CceEEEECCcEEEEecCCCCCCeeEEEEecCccCCccCCCHhHHHHHHHHHH-HHHHHHHhcCCCceEEEEeCCCCCccc
Q psy14209 12 NTWWFVTDNDVVAFPDIKPAAKHHTLVISKQHVLNAKVLTSEHKALVQWLED-LSAITYLCLMVIFHRYGFHWPPFYSIG 90 (119)
Q Consensus 12 ~~~iv~e~~~~~a~~~~~p~~~gh~lViPk~H~~~~~~L~~~e~~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~q~v~ 90 (119)
...+|+|++.+.++++.+|.+|||+||+||+|+.++.+|++++...+...+. +++.+.+.++++++|++ .+||+|+
T Consensus 12 d~~~v~~~~~~~v~l~~~p~~pGh~lV~~k~h~~~l~dl~~~~~~~l~~~~~~v~~~l~~~~~~~~~N~~---~aGq~V~ 88 (137)
T 3ohe_A 12 DTHKLGESRLCDVLLMNDNTWPWVILVPRVSGIREIYELPNEQQQRLLFESSALSEGMMELFGGDKMNVA---ALGNMVP 88 (137)
T ss_dssp HEEEEEECSSEEEEEESCTTSCEEEEEESCTTCCSGGGSCHHHHHHHHHHHHHHHHHHHHHTTCSEEEEE---ECCSSCC
T ss_pred ccEEEEECCcEEEEEcCCCCCCEEEEEecccccCChHHCCHHHHHHHHHHHHHHHHHHHHHhCCCeEEEe---eccCcCC
Confidence 3578999999999999999999999999999999999999999875655554 45555558888888887 4689999
Q ss_pred eeEEEEecCCCCCCC
Q psy14209 91 HLHLHVIAPVSEMSF 105 (119)
Q Consensus 91 HlH~Hiip~~~~~~~ 105 (119)
|+|+|||||+.+...
T Consensus 89 HlH~HviPR~~~D~~ 103 (137)
T 3ohe_A 89 QLHLHHIVRYQGDPA 103 (137)
T ss_dssp SCCEEEEEECTTSTT
T ss_pred EEEEEEeCCCCCCCC
Confidence 999999998665433
No 22
>3i24_A HIT family hydrolase; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; 1.50A {Vibrio fischeri ES114}
Probab=99.90 E-value=3e-23 Score=139.72 Aligned_cols=89 Identities=11% Similarity=-0.061 Sum_probs=75.8
Q ss_pred CceEEEECCcEEEEecCCCCCCeeEEEEecCccCCccCCCHhHHHHHHHHHH-HHHHHHHhcCCCceEEEEeCCCCCccc
Q psy14209 12 NTWWFVTDNDVVAFPDIKPAAKHHTLVISKQHVLNAKVLTSEHKALVQWLED-LSAITYLCLMVIFHRYGFHWPPFYSIG 90 (119)
Q Consensus 12 ~~~iv~e~~~~~a~~~~~p~~~gh~lViPk~H~~~~~~L~~~e~~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~q~v~ 90 (119)
...+|+|++.++++++.+|.+|||+||+||+|+.++.+|++++...+...+. +++.+.+.++++++|++. +||+|+
T Consensus 12 d~~~v~~~~~~~v~L~~~p~~pGh~LV~pk~Hv~~l~dL~~e~~~~l~~~~~~va~al~~~~~~~~~Ni~~---aGq~V~ 88 (149)
T 3i24_A 12 DCIVLGNLPLCKVLLIKEDIGPWLILVPRIEELKEIHHMTDEQQIQFIKESSAVAQLLEDNFSPDKINIGA---LGNLVP 88 (149)
T ss_dssp HEEEEEECSSEEEEEECBSSTTEEEEEESCTTCSSGGGSCHHHHHHHHHHHHHHHHHHHHHHCCSEEEEEE---CCSSCC
T ss_pred CCEEEEECCCEEEEEcCCCCCCEEEEEeCccccCChhHCCHHHHHHHHHHHHHHHHHHHHhhCCCeEEEhh---hhCCCC
Confidence 4578999999999999999999999999999999999999999876655555 455555578888888873 699999
Q ss_pred eeEEEEecCCCCC
Q psy14209 91 HLHLHVIAPVSEM 103 (119)
Q Consensus 91 HlH~Hiip~~~~~ 103 (119)
|+|+|||||..+.
T Consensus 89 HlH~HvIPR~~~D 101 (149)
T 3i24_A 89 QLHIHHIARFTTD 101 (149)
T ss_dssp SCCEEEEEECTTS
T ss_pred EEEEEEeCCccCC
Confidence 9999999986644
No 23
>3nrd_A Histidine triad (HIT) protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE; 2.06A {Sinorhizobium meliloti}
Probab=99.86 E-value=3.5e-21 Score=127.63 Aligned_cols=91 Identities=13% Similarity=-0.040 Sum_probs=73.9
Q ss_pred CceEEEECCcEEEEecCCCCCCeeEEEEec-CccCCccCCCHhHHHHHHHHHH-HHHHHHHhcCCCceEEEEeCCCCCcc
Q psy14209 12 NTWWFVTDNDVVAFPDIKPAAKHHTLVISK-QHVLNAKVLTSEHKALVQWLED-LSAITYLCLMVIFHRYGFHWPPFYSI 89 (119)
Q Consensus 12 ~~~iv~e~~~~~a~~~~~p~~~gh~lViPk-~H~~~~~~L~~~e~~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~q~v 89 (119)
...+|++++.+.++++.+|.+|| +||||| +|+.++.+|++++...+...+. +++.+.+.++++++|++ .+||+|
T Consensus 14 ~~~~v~~~~~~~v~l~~~~~~p~-~lvVpkr~h~~~l~dl~~~~~~~l~~~~~~v~~~l~~~~~~~~~N~~---~aGq~V 89 (135)
T 3nrd_A 14 DGIPIGTLGLCQMRLMNDRRWPW-LILVPQRADIKEVFELTPLDQAMLTFETNLVAAGLKKATGAEKINIG---ALGNIV 89 (135)
T ss_dssp HEEEEEECSSEEEEEESCTTSCE-EEEEECCTTCCSGGGSCHHHHHHHHHHHHHHHHHHHHHHTCSEEEEE---ECCSSC
T ss_pred CCEEEEECCcEEEEEcCCCCCCE-EEEEcCccccCChHHCCHHHHHHHHHHHHHHHHHHHHhcCCCeEEEe---eccCCC
Confidence 45799999999999999999996 577787 7999999999999865655555 45555557888888887 368999
Q ss_pred ceeEEEEecCCCCCCCc
Q psy14209 90 GHLHLHVIAPVSEMSFL 106 (119)
Q Consensus 90 ~HlH~Hiip~~~~~~~~ 106 (119)
+|+|+|||||..+...|
T Consensus 90 ~HlH~HviPR~~~D~~~ 106 (135)
T 3nrd_A 90 RQLHVHVIARREGDPNW 106 (135)
T ss_dssp CSCCEEEEEECTTSTTT
T ss_pred CEEEEEEecCCCCCCCC
Confidence 99999999987655444
No 24
>3i4s_A Histidine triad protein; hydrolase, phosphatase, HIT superfamily, PSI-2, NYSGXRC, STR genomics, protein structure initiative; 1.75A {Bradyrhizobium japonicum}
Probab=99.83 E-value=5.2e-20 Score=123.81 Aligned_cols=90 Identities=10% Similarity=-0.097 Sum_probs=71.3
Q ss_pred ceEEEECCcEEEEecCCCCCCeeEEEEecC-ccCCccCCCHhHHHHHHHHHHHHHHHH-HhcCCCceEEEEeCCCCCccc
Q psy14209 13 TWWFVTDNDVVAFPDIKPAAKHHTLVISKQ-HVLNAKVLTSEHKALVQWLEDLSAITY-LCLMVIFHRYGFHWPPFYSIG 90 (119)
Q Consensus 13 ~~iv~e~~~~~a~~~~~p~~~gh~lViPk~-H~~~~~~L~~~e~~~l~~~~~~~~~~~-~~~~~~~~~~~~~~~~~q~v~ 90 (119)
..++.|.+.+.++.+..+ +.+|+|||||+ |+.++.+|+++++..+..++..+.+.+ +.++++++|++ .+||+|+
T Consensus 18 ~~~~~e~p~~~v~l~~~~-~~~H~LVIPk~~H~~~l~dL~~e~~~~l~~~~~~va~~l~~~~~~~g~N~~---~aGq~V~ 93 (149)
T 3i4s_A 18 TIDIGDLPLSKVLVIKDA-NYPWLLLVPRRPDAVEIIDLDEVQQAQLMTEISRVSRALKEITKCDKLNIA---ALGNLVP 93 (149)
T ss_dssp EEEEEECSSEEEEEESCT-TSCEEEEEECCTTCCSGGGSCHHHHHHHHHHHHHHHHHHHHHHTCSEEEEE---ECCSSCC
T ss_pred CEEEEEcCceEEEECCCC-CCCEEEEEecccccCChhHCCHHHHHHHHHHHHHHHHHHHHhcCCCeEEEe---ecCCcCC
Confidence 568899999999998554 56699999999 899999999999877766666444444 36778888776 3689999
Q ss_pred eeEEEEecCCCCCCCc
Q psy14209 91 HLHLHVIAPVSEMSFL 106 (119)
Q Consensus 91 HlH~Hiip~~~~~~~~ 106 (119)
|+|+|||||..+...|
T Consensus 94 HlH~HvIPR~~~D~~~ 109 (149)
T 3i4s_A 94 QLHVHIIARRTGDAAW 109 (149)
T ss_dssp SCCEEEEEECTTSTTT
T ss_pred EEEEEEECCcCCCCCC
Confidence 9999999986654443
No 25
>3sp4_A Aprataxin-like protein; HIT domain, zinc finger, DNA-binding protein, DNA deadenylas hydrolase; 1.80A {Schizosaccharomyces pombe} PDB: 3spd_A* 3spl_A* 3szq_A*
Probab=99.79 E-value=2.7e-19 Score=125.31 Aligned_cols=90 Identities=27% Similarity=0.347 Sum_probs=70.8
Q ss_pred EEEECCcEEEEecCCCCCCeeEEEEecCccCCccCCCH---hHHHHHHHHHHHHH-HHHH-h----------cCC-----
Q psy14209 15 WFVTDNDVVAFPDIKPAAKHHTLVISKQHVLNAKVLTS---EHKALVQWLEDLSA-ITYL-C----------LMV----- 74 (119)
Q Consensus 15 iv~e~~~~~a~~~~~p~~~gh~lViPk~H~~~~~~L~~---~e~~~l~~~~~~~~-~~~~-~----------~~~----- 74 (119)
+|||||.++||.|++|.++||+|||||+|+.++.++++ ++..++..|...++ ++++ . +..
T Consensus 23 ~v~edd~~~af~D~~P~a~~H~LVIPk~h~~~~~~p~~al~d~~~Ll~~m~~la~~~~l~~~~~~~~~~~~~~~~~~~~~ 102 (204)
T 3sp4_A 23 VIYYDDDVVLVRDMFPKSKMHLLLMTRDPHLTHVHPLEIMMKHRSLVEKLVSYVQGDLSGLIFDEARNCLSQQLTNEALC 102 (204)
T ss_dssp EEEECSSEEEEECSSCSSSSEEEEEECCTTTTTSCHHHHHHHCHHHHHHHHHHHHTTTHHHHHHHHHHHSCTTCCHHHHH
T ss_pred EEEEcCCEEEEeCCCCCCCccEEEEeccccCcccchhhhhhhhHHHHHHHHHHHHHHHHHHHHhhhhhhhcccCCcCCee
Confidence 99999999999999999999999999999999887554 34567888877777 5333 1 111
Q ss_pred CceEEEEeCCCCCccceeEEEEecCCCCCCCc
Q psy14209 75 IFHRYGFHWPPFYSIGHLHLHVIAPVSEMSFL 106 (119)
Q Consensus 75 ~~~~~~~~~~~~q~v~HlH~Hiip~~~~~~~~ 106 (119)
..+++|+|.+| |+.|||+|||.+....+-+
T Consensus 103 ~~i~~GfHa~P--Sm~HLHLHVIS~Df~s~~l 132 (204)
T 3sp4_A 103 NYIKVGFHAGP--SMNNLHLHIMTLDHVSPSL 132 (204)
T ss_dssp TTEEEEEESSC--SSSSCCEEEEESCCCCTTC
T ss_pred eeEeccCCCCC--cccceeEEEeccCCCChhh
Confidence 26899999876 9999999999864444433
No 26
>3bl9_A Scavenger mRNA-decapping enzyme DCPS; ligand complex, cytoplasm, hydrolase, nonsense-mediated mRNA decay, nucleus, polymorphism, structural genomics; HET: DD2; 1.80A {Homo sapiens} SCOP: d.13.1.3 d.246.1.1 PDB: 3bl7_A* 3bla_A*
Probab=99.61 E-value=4.6e-15 Score=108.93 Aligned_cols=95 Identities=24% Similarity=0.261 Sum_probs=83.3
Q ss_pred cccc--CCCceEEEECCc----EEEEecCC----CCCCeeEEEEecCc-cCCccCCCHhHHHHHHHHHHHHHHHHH---h
Q psy14209 6 KIIF--KPNTWWFVTDND----VVAFPDIK----PAAKHHTLVISKQH-VLNAKVLTSEHKALVQWLEDLSAITYL---C 71 (119)
Q Consensus 6 ~ii~--e~~~~iv~e~~~----~~a~~~~~----p~~~gh~lViPk~H-~~~~~~L~~~e~~~l~~~~~~~~~~~~---~ 71 (119)
+|+. +.+++++|||+. |+++.|.+ |...-|+|+||++| +.|+.+|+.++.++|..|...++++++ +
T Consensus 142 nIl~~~~E~e~ilyeD~d~~~gFvllpDlkWd~~~~~~lhlLaI~~~~~I~SlrdL~~~HlpLL~~M~~~~~~~i~~~y~ 221 (301)
T 3bl9_A 142 NILDKKAEADRIVFENPDPSDGFVLIPDLKWNQQQLDDLYLIAICHRRGIRSLRDLTPEHLPLLRNILHQGQEAILQRYR 221 (301)
T ss_dssp HHHTTSSSGGGCCEEECCTTTCEEEEECTTCCSSCSTTCEEEEEESSSCCCSGGGCCGGGHHHHHHHHHHHHHHHHHHHC
T ss_pred HHhhCCCccccEEEecCCCCcCEEEeccCccCCCcccccEEEEEecccCCCChHHCCHhHHHHHHHHHHHHHHHHHHhcC
Confidence 3554 456899999988 99999987 78999999999988 999999999999999999999999987 3
Q ss_pred cCCCceEEEEeCCCCCccceeEEEEecCCCC
Q psy14209 72 LMVIFHRYGFHWPPFYSIGHLHLHVIAPVSE 102 (119)
Q Consensus 72 ~~~~~~~~~~~~~~~q~v~HlH~Hiip~~~~ 102 (119)
++...+++|+|..| |+.|+|+||+....+
T Consensus 222 ~~~~~~rlgfHy~P--S~yHLHlHvis~~~~ 250 (301)
T 3bl9_A 222 MKGDHLRVYLHYLP--SYYHLHVHFTALGFE 250 (301)
T ss_dssp CCGGGEEEEEESSC--SSSSCEEEEEETTSC
T ss_pred CChHHeEEEecCCC--CcceEEEEEEecCCC
Confidence 55788999999999 999999999976543
No 27
>1vlr_A MRNA decapping enzyme; 16740816, structural genomics, JCSG, protein structure initiative, PSI, joint center for structural genomics; 1.83A {Mus musculus} SCOP: d.13.1.3 d.246.1.1 PDB: 1xmm_B* 1xml_B 1st0_B* 1st4_B*
Probab=99.59 E-value=8.7e-15 Score=108.98 Aligned_cols=95 Identities=24% Similarity=0.242 Sum_probs=81.7
Q ss_pred cccc--CCCceEEEECCc----EEEEecCC----CCCCeeEEEEecCc-cCCccCCCHhHHHHHHHHHHHHHHHHH---h
Q psy14209 6 KIIF--KPNTWWFVTDND----VVAFPDIK----PAAKHHTLVISKQH-VLNAKVLTSEHKALVQWLEDLSAITYL---C 71 (119)
Q Consensus 6 ~ii~--e~~~~iv~e~~~----~~a~~~~~----p~~~gh~lViPk~H-~~~~~~L~~~e~~~l~~~~~~~~~~~~---~ 71 (119)
+|+. +.+.+++|||+. |+++.|.+ |...-|+|+||++| +.|+.+|+.+++++|..|...++++++ +
T Consensus 189 nIl~~~~E~e~vlyeD~d~~~gFvllpDlKWd~~~~~~lhlLaI~~~~dI~SlRdL~~~HlpLL~~M~~~~~~ii~~~yg 268 (350)
T 1vlr_A 189 NILDKKAEADRIVFENPDPSDGFVLIPDLKWNQQQLDDLYLIAICHRRGIRSLRDLTPEHLPLLRNILREGQEAILKRYQ 268 (350)
T ss_dssp HHHTC----CCCSEEECCTTTCEEEEECTTCCSSCSTTCEEEEEESSSCCCSGGGCCGGGHHHHHHHHHHHHHHHHHHHC
T ss_pred HHhhCCCccccEEEecCCCCCCeEEeccCccCCCccccceEEEEecccCCCChHHCCHhHHHHHHHHHHHHHHHHHHhcC
Confidence 3554 456899999988 99999987 78999999999988 999999999999999999999999987 3
Q ss_pred cCCCceEEEEeCCCCCccceeEEEEecCCCC
Q psy14209 72 LMVIFHRYGFHWPPFYSIGHLHLHVIAPVSE 102 (119)
Q Consensus 72 ~~~~~~~~~~~~~~~q~v~HlH~Hiip~~~~ 102 (119)
+....+++|||..| |+.|||+|||....+
T Consensus 269 ~~~~~lRlgfHy~P--S~yHLHlHvis~~~~ 297 (350)
T 1vlr_A 269 VTGDRLRVYLHYLP--SYYHLHVHFTALGFE 297 (350)
T ss_dssp CCGGGEEEEEESSC--SSSSCEEEEEETTSC
T ss_pred CChHHeEEEecCCC--CcceEEEEEEeccCC
Confidence 55788999999999 999999999976543
No 28
>1z84_A Galactose-1-phosphate uridyl transferase-like protein; GALT, zinc, AMP, structural genomics, protein structure initiative, CESG; HET: AMP; 1.83A {Arabidopsis thaliana} SCOP: d.13.1.2 d.13.1.2 PDB: 1zwj_A 2q4h_A* 2q4l_A 2h39_A*
Probab=98.72 E-value=1.4e-07 Score=70.81 Aligned_cols=95 Identities=9% Similarity=-0.039 Sum_probs=67.8
Q ss_pred CCccccccc-CCCceEEE-----ECCcEEEEecCCCCCC------------e-----------eEEEEecCccCCccCCC
Q psy14209 1 MSFLSKIIF-KPNTWWFV-----TDNDVVAFPDIKPAAK------------H-----------HTLVISKQHVLNAKVLT 51 (119)
Q Consensus 1 ~c~fc~ii~-e~~~~iv~-----e~~~~~a~~~~~p~~~------------g-----------h~lViPk~H~~~~~~L~ 51 (119)
.|+||.--. ..+..+.. .+-.+++|.+.+|..+ | +++|.+.+|..++.+|+
T Consensus 62 ~CpfCpg~~~~t~~e~~~~~~~~~~~~~~v~~N~fP~l~~~~~~~~~~~~~~l~~~~~~~G~~~Vii~sp~H~~~l~~ls 141 (351)
T 1z84_A 62 SCPFCIGREQECAPELFRVPDHDPNWKLRVIENLYPALSRNLETQSTQPETGTSRTIVGFGFHDVVIESPVHSIQLSDID 141 (351)
T ss_dssp CCTTSTTCGGGSSCEEEEESTTCSSCSEEEEECSSCSSBGGGTTTC--------CEEECBCEEEEEECCSSSSCCGGGSC
T ss_pred CCcCCCCCcccCCcccccccccCCCceEEEEcCCCccccCCCCCcccccccchhhccccCcceEEEEeCCCCCCCcHHCC
Confidence 399998544 44544433 3566899999999883 4 88999999999999999
Q ss_pred HhHHHHHHHHHHHHHHHHHhc----CCCceEEEEeCCC--CCccceeEEEEec
Q psy14209 52 SEHKALVQWLEDLSAITYLCL----MVIFHRYGFHWPP--FYSIGHLHLHVIA 98 (119)
Q Consensus 52 ~~e~~~l~~~~~~~~~~~~~~----~~~~~~~~~~~~~--~q~v~HlH~Hiip 98 (119)
.+++..+..+ .++-.+.+ +...+.+..|.|+ |.|.+|.|.||+.
T Consensus 142 ~~e~~~vi~~---~~~~~~~L~~~~~~~yv~iF~N~G~~aGaSl~HpH~QI~a 191 (351)
T 1z84_A 142 PVGIGDILIA---YKKRINQIAQHDSINYIQVFKNQGASAGASMSHSHSQMMA 191 (351)
T ss_dssp HHHHHHHHHH---HHHHHHHHTTCTTCCEEEEEEEESGGGTCCCSSCEEEEEE
T ss_pred HHHHHHHHHH---HHHHHHHHhcccCCCEEEEEEEcCcccCCCCcCccceeEe
Confidence 9995544443 33333322 2345667778775 8999999999985
No 29
>2pof_A CDP-diacylglycerol pyrophosphatase; NYSGXRC, PFAM02611, PSI-2, phospholipid biosynthesis structural genomics, protein structure initiative; 1.40A {Escherichia coli} SCOP: d.13.1.4
Probab=97.41 E-value=0.00057 Score=48.27 Aligned_cols=83 Identities=8% Similarity=-0.032 Sum_probs=55.6
Q ss_pred CceEEEECCcEEEEecCCCCCCeeEEEEecCccCCccC---CCHhHHHHHHHHHHHH-----HHHHHhcCCCceEEEEeC
Q psy14209 12 NTWWFVTDNDVVAFPDIKPAAKHHTLVISKQHVLNAKV---LTSEHKALVQWLEDLS-----AITYLCLMVIFHRYGFHW 83 (119)
Q Consensus 12 ~~~iv~e~~~~~a~~~~~p~~~gh~lViPk~H~~~~~~---L~~~e~~~l~~~~~~~-----~~~~~~~~~~~~~~~~~~ 83 (119)
|-.-|-....++++.| +..|.|.|++|...++.+++ +++.....+. ....+ +++-+.+......+.+|.
T Consensus 30 PC~~Vd~~~gyvvlKD--~~Gp~qyLLmPt~rItGIEsP~Ll~~~~pnYf~-~AW~aR~~v~~~~g~pipd~~lsLaINS 106 (227)
T 2pof_A 30 PCAEVKPNAGYVVLKD--LNGPLQYLLMPTYRINGTESPLLTDPSTPNFFW-LAWQARDFMSKKYGQPVPDRAVSLAINS 106 (227)
T ss_dssp TSSEEETTTTEEEEEC--SSSSSCEEEEESSCCCSTTCGGGGSTTSCCHHH-HHHHTTHHHHHHHTSCCCGGGEEEEEBC
T ss_pred CCceEccCCCEEEEeC--CCCCceEEEeccccccCccChhhcCCCCCcHHH-HHHHHhHHHHHhhCCCCCccceEEEecC
Confidence 3445667788888888 45788999999999877764 3322211122 22222 222235556678899998
Q ss_pred CCCCccceeEEEEe
Q psy14209 84 PPFYSIGHLHLHVI 97 (119)
Q Consensus 84 ~~~q~v~HlH~Hii 97 (119)
..|.|..|||+||=
T Consensus 107 ~~gRSQnQLHIHIs 120 (227)
T 2pof_A 107 RTGRTQNHFHIHIS 120 (227)
T ss_dssp GGGCSCCSCCEEEE
T ss_pred CCCccccceeeehh
Confidence 87889999999994
No 30
>1gup_A Galactose-1-phosphate uridylyltransferase; nucleotidyltransferase, galactose metabolism; HET: GDU; 1.80A {Escherichia coli} SCOP: d.13.1.2 d.13.1.2 PDB: 1guq_A* 1hxq_A* 1hxp_A*
Probab=95.49 E-value=0.062 Score=39.96 Aligned_cols=61 Identities=13% Similarity=-0.106 Sum_probs=39.8
Q ss_pred eEEEEecCccCCccCCCHhHHHHHHHHH-HHHHHHHHhcCCCceEEEE-eCCC--CCccceeEEEEec
Q psy14209 35 HTLVISKQHVLNAKVLTSEHKALVQWLE-DLSAITYLCLMVIFHRYGF-HWPP--FYSIGHLHLHVIA 98 (119)
Q Consensus 35 h~lViPk~H~~~~~~L~~~e~~~l~~~~-~~~~~~~~~~~~~~~~~~~-~~~~--~q~v~HlH~Hiip 98 (119)
.++|...+|-.++.+|+.++...+..+. ...+++. ..-.|...| |.|+ |.|.+|-|..|+.
T Consensus 107 ~VIi~sp~H~~~l~~l~~~~~~~vi~~~~~r~~~l~---~~~~yV~iF~N~G~~~G~Sl~HpH~Qi~a 171 (348)
T 1gup_A 107 RVICFSPDHSKTLPELSVAALTEIVKTWQEQTAELG---KTYPWVQVFENKGAAMGCSNPHPGGQIWA 171 (348)
T ss_dssp EEEESCSCTTCCGGGSCHHHHHHHHHHHHHHHHHHH---HHCSEEEEEEEESGGGTCSCCSSEEEEEE
T ss_pred EEEEcCCcccCChhhCCHHHHHHHHHHHHHHHHHHh---hcCCEEEEecccCCcCCcCCCCCceeEEe
Confidence 5556667899999999999865443332 2233332 122455555 4454 8999999999984
No 31
>3vg8_G Hypothetical protein TTHB210; alpha and beta proteins (A+B), unknown function; 2.20A {Thermus thermophilus}
Probab=77.89 E-value=3.1 Score=25.83 Aligned_cols=24 Identities=21% Similarity=0.164 Sum_probs=19.5
Q ss_pred CCceEEEEeCC-CCCccceeEEEEe
Q psy14209 74 VIFHRYGFHWP-PFYSIGHLHLHVI 97 (119)
Q Consensus 74 ~~~~~~~~~~~-~~q~v~HlH~Hii 97 (119)
.+..++-+|.+ +|-++||.|+|+.
T Consensus 76 vDHVdi~~~~gHpGve~PHyhI~l~ 100 (116)
T 3vg8_G 76 IDHVNMIPSGPHPGVSEPHYHIELV 100 (116)
T ss_dssp CCEEEEEECCCCTTCCSCEEEEEEE
T ss_pred cceEEEecCCCCCCcccCceEEEEE
Confidence 35678888765 5899999999997
No 32
>2o2a_A Hypothetical protein GBS1413; structural genomics, PSI-2, protei structure initiative; 2.10A {Streptococcus agalactiae} SCOP: d.33.1.2
Probab=48.59 E-value=26 Score=22.24 Aligned_cols=43 Identities=9% Similarity=-0.015 Sum_probs=28.1
Q ss_pred EecCccCCccCCCHhHHHHHHH-HHHHHHHHHH-----hcCCCceEEEE
Q psy14209 39 ISKQHVLNAKVLTSEHKALVQW-LEDLSAITYL-----CLMVIFHRYGF 81 (119)
Q Consensus 39 iPk~H~~~~~~L~~~e~~~l~~-~~~~~~~~~~-----~~~~~~~~~~~ 81 (119)
+..|-+.+.++++.+|.+.|+. ++...+++-- +++..|.++-|
T Consensus 78 i~~r~~~~~sd~~q~ev~~LsrPL~d~i~rLTYEVTeIAlD~PGinL~F 126 (128)
T 2o2a_A 78 IQGRLINEPSEFSQDEVENLAAPLLEIVKRLTYEVTEIALDRPGVTLEF 126 (128)
T ss_dssp EETCCCSCGGGSCHHHHHHHHHHHHHHHHHHHHHHHHHHTTSSCCCCCC
T ss_pred ecccccCCcccCCHHHHHHHHHHHHHHHhhheeEEEEEEecCCccceec
Confidence 3444566788999999877765 4455555443 67777666544
No 33
>3hfn_A ASL2047 protein; HFQ, SM, RNA-binding protein, sRNA, translational regulation binding protein; 2.31A {Nostoc SP}
Probab=48.27 E-value=19 Score=20.59 Aligned_cols=32 Identities=19% Similarity=0.113 Sum_probs=23.1
Q ss_pred CceEEEECCcEEEEecCCCCCCeeEEEEecCccCCc
Q psy14209 12 NTWWFVTDNDVVAFPDIKPAAKHHTLVISKQHVLNA 47 (119)
Q Consensus 12 ~~~iv~e~~~~~a~~~~~p~~~gh~lViPk~H~~~~ 47 (119)
.+++.++|.+|+++.+.+ ++-.+|-|+.+..+
T Consensus 37 ~G~i~WQD~~cl~L~~~~----~~~~LI~R~AI~~I 68 (72)
T 3hfn_A 37 TGRVLWQDPTCVCIADEN----SRQTTIWKQAIAYL 68 (72)
T ss_dssp EEEEEEECSSEEEEEC-------CEEEEEGGGEEEE
T ss_pred EEEEEEECCCEEEEEcCC----CCeEEEEeeeeEEE
Confidence 578999999999999765 45577777776544
No 34
>3hfo_A SSR3341 protein; HFQ, SM, RNA-binding protein, sRNA, translational regulation binding protein; 1.30A {Synechocystis SP}
Probab=38.72 E-value=40 Score=19.08 Aligned_cols=33 Identities=9% Similarity=-0.035 Sum_probs=24.5
Q ss_pred CCceEEEECCcEEEEecCCCCCCeeEEEEecCccCCc
Q psy14209 11 PNTWWFVTDNDVVAFPDIKPAAKHHTLVISKQHVLNA 47 (119)
Q Consensus 11 ~~~~iv~e~~~~~a~~~~~p~~~gh~lViPk~H~~~~ 47 (119)
..+++.+.|.+|+++.+.+ ++-.+|-|+.+..+
T Consensus 34 l~G~i~WQD~~cl~L~~~~----~~~~LI~r~AI~~I 66 (70)
T 3hfo_A 34 LFGTIRWQDTDGLGLVDDS----ERSTIVRLAAIAYI 66 (70)
T ss_dssp EEEEEEEECSSEEEEECTT----CCEEEEEGGGEEEE
T ss_pred EEEEEEEeCCCEEEEEcCC----CCeEEEEeeeeEEE
Confidence 3578999999999998764 45567777766543
No 35
>3pqe_A L-LDH, L-lactate dehydrogenase; FBP, oxidoreductase; 2.20A {Bacillus subtilis} PDB: 3pqf_A* 3pqd_A*
Probab=36.58 E-value=34 Score=24.90 Aligned_cols=25 Identities=8% Similarity=-0.106 Sum_probs=18.0
Q ss_pred CCCHhHHHHHHHHHHHHHHHHHhcC
Q psy14209 49 VLTSEHKALVQWLEDLSAITYLCLM 73 (119)
Q Consensus 49 ~L~~~e~~~l~~~~~~~~~~~~~~~ 73 (119)
+|+++|.+.|.......++..+.+.
T Consensus 290 ~L~~~E~~~l~~s~~~l~~~~~~~~ 314 (326)
T 3pqe_A 290 NLNEKEKEQFLHSAGVLKNILKPHF 314 (326)
T ss_dssp CCCHHHHHHHHHHHHHHHHHHTTTC
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHhh
Confidence 6899998888776666666665443
No 36
>1mg4_A Doublecortin, doublecortin-like kinase (N-terminal domain); DCX domain, microtubule bundling, cortex development, transferase; 1.50A {Homo sapiens} SCOP: d.15.11.1 PDB: 1mfw_A 1mjd_A 2bqq_A 2xrp_I*
Probab=34.12 E-value=29 Score=21.41 Aligned_cols=28 Identities=14% Similarity=0.016 Sum_probs=23.5
Q ss_pred cEEEEecCCCCCCeeEEEEecCccCCcc
Q psy14209 21 DVVAFPDIKPAAKHHTLVISKQHVLNAK 48 (119)
Q Consensus 21 ~~~a~~~~~p~~~gh~lViPk~H~~~~~ 48 (119)
.+.++.+-.+..+|-.+++.++.+.++.
T Consensus 17 ~I~~yrNGD~~~~G~~~~v~~~~~~tfd 44 (113)
T 1mg4_A 17 KVRFYRNGDRYFKGIVYAISPDRFRSFE 44 (113)
T ss_dssp EEEEEETTCSSCCCEEEEECTTTCSSHH
T ss_pred EEEEEECCCCCCCCEEEEECccccCCHH
Confidence 3567778899999999999999988774
No 37
>2zet_C Melanophilin; complex, GTP-binding protein, GTPase, G-protein, RAB, RAB27B, effector, SLP homology domain, acetylation, lipoprotein, membrane; HET: GTP; 3.00A {Mus musculus}
Probab=33.82 E-value=47 Score=21.57 Aligned_cols=23 Identities=22% Similarity=0.127 Sum_probs=16.3
Q ss_pred ccCCccCCCHhHHHHHHHHHHHH
Q psy14209 43 HVLNAKVLTSEHKALVQWLEDLS 65 (119)
Q Consensus 43 H~~~~~~L~~~e~~~l~~~~~~~ 65 (119)
...|++.||++|++.+..+++..
T Consensus 10 ~~~dLs~LteeEr~~Il~VL~Rd 32 (153)
T 2zet_C 10 KRLDLSTLTDEEAEHVWAVVQRD 32 (153)
T ss_dssp -CCCCTTSCHHHHHHHHHHHHHH
T ss_pred cCCCcccCCHHHHHHHHHHHHhH
Confidence 34688999999987776655443
No 38
>2ljx_A Protein E6; metal binding protein; NMR {Human papillomavirus} PDB: 2ljy_A
Probab=32.99 E-value=16 Score=21.36 Aligned_cols=26 Identities=12% Similarity=0.071 Sum_probs=18.6
Q ss_pred CCcccc-ccc--C------CCceEEEECCcEEEEe
Q psy14209 1 MSFLSK-IIF--K------PNTWWFVTDNDVVAFP 26 (119)
Q Consensus 1 ~c~fc~-ii~--e------~~~~iv~e~~~~~a~~ 26 (119)
+|+||+ .+. | ..-++||+++...+..
T Consensus 31 ~CvFC~~~Lt~~E~~~F~~k~L~lVwR~~~pya~C 65 (84)
T 2ljx_A 31 ECVYCKQQLLRREVYDFARRDLCIVYRDGNPYAVC 65 (84)
T ss_dssp EETTTCCBCCHHHHHHHHHTTCCCEEETTEEEECC
T ss_pred EeeecCCcCCHHHHHHHhhcCeEEEEECCEeeEEc
Confidence 488998 443 3 3568999999887764
No 39
>1ts9_A Ribonuclease P protein component 1; anti-parallel, beta-sheet, alpha helix, internal salt bridge, selenomethionine, SM-fold, hydrolase; 1.70A {Archaeoglobus fulgidus} SCOP: b.137.1.1 PDB: 1tsf_A 1pc0_A
Probab=32.62 E-value=61 Score=19.57 Aligned_cols=29 Identities=7% Similarity=-0.027 Sum_probs=23.4
Q ss_pred CceEEEECCcEEEEecCCCCCCeeEEEEecCccC
Q psy14209 12 NTWWFVTDNDVVAFPDIKPAAKHHTLVISKQHVL 45 (119)
Q Consensus 12 ~~~iv~e~~~~~a~~~~~p~~~gh~lViPk~H~~ 45 (119)
.+.+|.|+.+.+.+.. .+.+.++||++..
T Consensus 34 ~GiVV~ETkntf~I~t-----~~~~k~VPK~~~v 62 (102)
T 1ts9_A 34 KGEVVDETQNTLKIMT-----EKGLKVVAKRGRT 62 (102)
T ss_dssp EEEEEEECSSEEEEEE-----SSSEEEEECTTCE
T ss_pred EEEEEEeccceEEEEe-----CCcEEEEECCCEE
Confidence 3578999999988876 4678999999863
No 40
>2hng_A Hypothetical protein; alpha-beta, structural genomics, PSI-2, protein structure in midwest center for structural genomics, MCSG; HET: MSE; 1.63A {Streptococcus pneumoniae} SCOP: d.33.1.2
Probab=28.31 E-value=78 Score=20.00 Aligned_cols=40 Identities=13% Similarity=-0.043 Sum_probs=25.6
Q ss_pred EecCccCCccCCCHhHHHHHHH-HHHHHHHHHH-----hcCCCceE
Q psy14209 39 ISKQHVLNAKVLTSEHKALVQW-LEDLSAITYL-----CLMVIFHR 78 (119)
Q Consensus 39 iPk~H~~~~~~L~~~e~~~l~~-~~~~~~~~~~-----~~~~~~~~ 78 (119)
+..|-+.+.++++.+|.+.|+. ++...+++-- +++..|.+
T Consensus 79 i~dr~~~~~sd~~q~ev~~LsrPL~d~i~rLTYEVTeIAlD~PGin 124 (127)
T 2hng_A 79 IDGRIVNEPSELNQEEVETLARPCLNMLNRLTYEVTEIALDLPGIN 124 (127)
T ss_dssp EETCCCSSGGGSCHHHHHHHHHHHHHHHHHHHHHHHHHHHTSSCCC
T ss_pred ecccccCCcccCCHHHHHHHHHHHHHHHhhheeEEEEEEecCCCcc
Confidence 3445567789999999877765 4445555442 56666544
No 41
>1v76_A RNAse P protein PH1771P; RNA binding protein, archaeal RNAse P protein; 2.00A {Pyrococcus horikoshii} SCOP: b.137.1.1
Probab=27.30 E-value=90 Score=18.57 Aligned_cols=34 Identities=3% Similarity=0.028 Sum_probs=25.8
Q ss_pred CceEEEECCcEEEEecCCCCCCeeEEEEecCccCCccCCC
Q psy14209 12 NTWWFVTDNDVVAFPDIKPAAKHHTLVISKQHVLNAKVLT 51 (119)
Q Consensus 12 ~~~iv~e~~~~~a~~~~~p~~~gh~lViPk~H~~~~~~L~ 51 (119)
.+.+|.|+.+.+.+.. ..+.+|||++..=..+++
T Consensus 36 ~GiVV~ET~ntf~I~t------~~~~~VPK~~~vF~f~~~ 69 (96)
T 1v76_A 36 EGYVIDETRNMLVIAG------DRIWKVPKDVSIFEFEAD 69 (96)
T ss_dssp EEEEEEECSSEEEEES------SSEEEEESTTEEEEEECT
T ss_pred EEEEEEeccceEEEEc------CCEEEEECCCEEEEEEEC
Confidence 3568999999988886 388999999865333444
No 42
>3gd5_A Otcase, ornithine carbamoyltransferase; structural genomics, NYSGXRC, target 9454P, operon, amino-acid biosynthesis, ARGI biosynthesis; 2.10A {Gloeobacter violaceus}
Probab=26.41 E-value=68 Score=23.44 Aligned_cols=28 Identities=14% Similarity=0.027 Sum_probs=19.6
Q ss_pred ecCccCCccCCCHhHHHHHHHHHHHHHHHHH
Q psy14209 40 SKQHVLNAKVLTSEHKALVQWLEDLSAITYL 70 (119)
Q Consensus 40 Pk~H~~~~~~L~~~e~~~l~~~~~~~~~~~~ 70 (119)
..+|.-++.|++.+|+ ..++..|.++-+
T Consensus 12 ~~rhllsi~dls~~ei---~~ll~~A~~lk~ 39 (323)
T 3gd5_A 12 FRPDLLSLDDLDEAQL---HALLTLAHQLKR 39 (323)
T ss_dssp CCSCBSSGGGSCHHHH---HHHHHHHHHHHH
T ss_pred cCCCccchHhCCHHHH---HHHHHHHHHHHh
Confidence 4589999999999994 444445555443
No 43
>2ns6_A Mobilization protein A; nickase, 5-strand antiparallel beta sheet, metalloenzyme, hydrolase; 2.10A {Pseudomonas aeruginosa}
Probab=26.33 E-value=1.4e+02 Score=19.84 Aligned_cols=45 Identities=11% Similarity=0.003 Sum_probs=22.0
Q ss_pred cCCCHhHHHHHHHHHHHHHHHHHhcCCCceEEEEeCCCCCccceeEEEEec
Q psy14209 48 KVLTSEHKALVQWLEDLSAITYLCLMVIFHRYGFHWPPFYSIGHLHLHVIA 98 (119)
Q Consensus 48 ~~L~~~e~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~v~HlH~Hiip 98 (119)
.+|+.++...|.. ..+++.+...+ ..+.+.+|... . ...|.||+-
T Consensus 80 ~EL~~eq~~~L~~--~f~~~~~~~~G-~~~d~AIH~~~-~--~NpHaHim~ 124 (185)
T 2ns6_A 80 VELTLDQQKALAS--EFAQHLTGAER-LPYTLAIHAGG-G--ENPHCHLMI 124 (185)
T ss_dssp TTSCHHHHHHHHH--HHHHHHHTTTT-CCEEEEEEEET-T--TEEEEEEEE
T ss_pred ccCCHHHHHHHHH--HHHHHHHHhcC-CEEEEEEEcCC-C--CCceEEEEE
Confidence 3577776533321 22333332111 23667888732 2 356777764
No 44
>2cs7_A Pneumococcal histidine triad A protein; PHTA, pneumococcal histidine triad protein, structural genomics, unknown function; 1.20A {Streptococcus pneumoniae} SCOP: d.9.2.1
Probab=26.13 E-value=84 Score=16.89 Aligned_cols=33 Identities=18% Similarity=0.136 Sum_probs=24.4
Q ss_pred CceEEEECCcEEEEecCCCCCCeeEEEEecCccCCccCCCHhHH
Q psy14209 12 NTWWFVTDNDVVAFPDIKPAAKHHTLVISKQHVLNAKVLTSEHK 55 (119)
Q Consensus 12 ~~~iv~e~~~~~a~~~~~p~~~gh~lViPk~H~~~~~~L~~~e~ 55 (119)
|.+||-+++.-+++..- .|.-.|||. +|++.|+
T Consensus 14 p~dIvs~~~~gyvv~HG-----dH~HyIpk~------~Ls~~el 46 (55)
T 2cs7_A 14 ASDIIEDTGDAYIVPHG-----DHYHYIPKN------ELSASEL 46 (55)
T ss_dssp GGGCCEECSSEEEEEET-----TEEEEEEGG------GSCHHHH
T ss_pred HHHheecCCCeEEEecC-----CeEEEeEhH------HCCHHHH
Confidence 67888888888887765 588888875 4566664
No 45
>1ml4_A Aspartate transcarbamoylase; beta pleated sheet, protein inhibitor complex, transferase; HET: PAL; 1.80A {Pyrococcus abyssi} SCOP: c.78.1.1 c.78.1.1
Probab=25.75 E-value=65 Score=23.33 Aligned_cols=26 Identities=12% Similarity=0.084 Sum_probs=18.5
Q ss_pred cCccCCccCCCHhHHHHHHHHHHHHH
Q psy14209 41 KQHVLNAKVLTSEHKALVQWLEDLSA 66 (119)
Q Consensus 41 k~H~~~~~~L~~~e~~~l~~~~~~~~ 66 (119)
.+|.-++.||+.+|+..+-+.....+
T Consensus 5 ~rh~l~~~dls~~ei~~ll~~A~~lk 30 (308)
T 1ml4_A 5 GRDVISIRDFSKEDIETVLATAERLE 30 (308)
T ss_dssp TCCBCCGGGCCHHHHHHHHHHHHHHH
T ss_pred CCcCcchhhCCHHHHHHHHHHHHHHH
Confidence 58999999999999655544443333
No 46
>1zbd_B Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: g.50.1.1
Probab=25.23 E-value=52 Score=20.84 Aligned_cols=22 Identities=18% Similarity=0.247 Sum_probs=13.1
Q ss_pred cCCccCCCHhHHHHHHHHHHHH
Q psy14209 44 VLNAKVLTSEHKALVQWLEDLS 65 (119)
Q Consensus 44 ~~~~~~L~~~e~~~l~~~~~~~ 65 (119)
..+++.||++|++.+..++...
T Consensus 4 ~~dls~LteeE~~~Il~Vl~Rd 25 (134)
T 1zbd_B 4 MRKQEELTDEEKEIINRVIARA 25 (134)
T ss_dssp ----CCCCSSHHHHHHHHHHHH
T ss_pred CCCcccCCHHHHHHHHHHHhhH
Confidence 3577889999987776655443
No 47
>3qc5_X Platelet binding protein GSPB; carbohydrate/sugar binding, sugar binding protein; HET: GOL; 1.40A {Streptococcus gordonii} PDB: 3qc6_X 4i8e_X* 3qd1_X*
Probab=24.45 E-value=1.2e+02 Score=22.63 Aligned_cols=40 Identities=18% Similarity=0.077 Sum_probs=27.9
Q ss_pred CcEEEEecCCCCCCeeEEEEecCccCCccCCCHhHHHHHHHHHHH
Q psy14209 20 NDVVAFPDIKPAAKHHTLVISKQHVLNAKVLTSEHKALVQWLEDL 64 (119)
Q Consensus 20 ~~~~a~~~~~p~~~gh~lViPk~H~~~~~~L~~~e~~~l~~~~~~ 64 (119)
..|....++.|..|+ .|--+.+...|+++|.+.+.+-++.
T Consensus 270 G~fklviKy~P~vP~-----~KV~V~DPnnLTd~EKekVkeaVKk 309 (360)
T 3qc5_X 270 GQFKLIIRFRIKTPE-----NTVFVNNPNQLTEVEKNLVREAVKK 309 (360)
T ss_dssp TEEEEEEECCCCCCS-----SCEEESCTTSCCHHHHHHHHHHHHH
T ss_pred ccEEEEEecCCCCCC-----cceEecCcccCCHHHHHHHHHHHHH
Confidence 445555678888876 4446789999999997666654443
No 48
>1pg5_A Aspartate carbamoyltransferase; 2.60A {Sulfolobus acidocaldarius} SCOP: c.78.1.1 c.78.1.1 PDB: 2be9_A*
Probab=23.67 E-value=69 Score=23.11 Aligned_cols=25 Identities=12% Similarity=0.150 Sum_probs=18.2
Q ss_pred CccCCccCCCHhHHHHHHHHHHHHHHHH
Q psy14209 42 QHVLNAKVLTSEHKALVQWLEDLSAITY 69 (119)
Q Consensus 42 ~H~~~~~~L~~~e~~~l~~~~~~~~~~~ 69 (119)
+|.-++.||+.+|+ ..++..|.++-
T Consensus 2 rh~ls~~dls~~ei---~~ll~~A~~lk 26 (299)
T 1pg5_A 2 KHIISAYNFSRDEL---EDIFALTDKYS 26 (299)
T ss_dssp CCBCSGGGCCHHHH---HHHHHHHHHHH
T ss_pred CccCchhhCCHHHH---HHHHHHHHHHH
Confidence 78899999999994 44555555554
No 49
>3by7_A Uncharacterized protein; metagenomics, structural genomics, joint center for structur genomics, JCSG, protein structure initiative; 2.60A {Uncultured marine organism}
Probab=23.49 E-value=76 Score=19.21 Aligned_cols=31 Identities=13% Similarity=0.267 Sum_probs=26.0
Q ss_pred EEecCCCCCCeeEEEEecCccCCccCCCHhH
Q psy14209 24 AFPDIKPAAKHHTLVISKQHVLNAKVLTSEH 54 (119)
Q Consensus 24 a~~~~~p~~~gh~lViPk~H~~~~~~L~~~e 54 (119)
-|.+..|.+.--.++++.+|+-++.+++++-
T Consensus 49 gF~pW~plsde~~~ii~~~~ViT~~e~~~eV 79 (100)
T 3by7_A 49 VLSPWQPYTDDKEIVIDDSKVITITSPKDDI 79 (100)
T ss_dssp EEEESCTTBCCSEEEEEGGGEEEEECBCHHH
T ss_pred eeecccccCcCceEEEchhhEEEEEeCCHHH
Confidence 3667778888888999999999999998863
No 50
>3d6n_B Aspartate carbamoyltransferase; reactor, chamber, pores, internal cavity, hydrolase, metal-B pyrimidine biosynthesis, hydrolase-transferase; HET: FLC; 2.30A {Aquifex aeolicus}
Probab=23.32 E-value=72 Score=22.93 Aligned_cols=25 Identities=12% Similarity=0.044 Sum_probs=18.2
Q ss_pred CccCCccCCCHhHHHHHHHHHHHHHHHH
Q psy14209 42 QHVLNAKVLTSEHKALVQWLEDLSAITY 69 (119)
Q Consensus 42 ~H~~~~~~L~~~e~~~l~~~~~~~~~~~ 69 (119)
+|.-++.|++.+|+ ..+++.|.++-
T Consensus 2 rh~ls~~dls~~ei---~~ll~~A~~lk 26 (291)
T 3d6n_B 2 RSLISSLDLTREEV---EEILKYAKEFK 26 (291)
T ss_dssp CCBCCGGGCCHHHH---HHHHHHHHHHH
T ss_pred CccCchhhCCHHHH---HHHHHHHHHHH
Confidence 68899999999994 44555555544
No 51
>2ef0_A Ornithine carbamoyltransferase; TTHA1199, thermus thermophil structural genomics, NPPSFA; 2.00A {Thermus thermophilus}
Probab=23.27 E-value=84 Score=22.69 Aligned_cols=27 Identities=15% Similarity=0.032 Sum_probs=19.0
Q ss_pred ecCccCCccCCCHhHHHHHHHHHHHHHHHH
Q psy14209 40 SKQHVLNAKVLTSEHKALVQWLEDLSAITY 69 (119)
Q Consensus 40 Pk~H~~~~~~L~~~e~~~l~~~~~~~~~~~ 69 (119)
..+|+-++.|++.+|+. .+++.|.++-
T Consensus 8 ~~rhlls~~dls~~ei~---~ll~~A~~lk 34 (301)
T 2ef0_A 8 LPKDLLDFSGYGPKELQ---ALLDLAEQLK 34 (301)
T ss_dssp CCSCBSSSTTCCHHHHH---HHHHHHHHHH
T ss_pred ccCCCcchhhCCHHHHH---HHHHHHHHHH
Confidence 45899999999999954 4444454443
No 52
>2zae_A Ribonuclease P protein component 1; ribonuclease P protein subunits, hetero dimer, hydrolase, TR processing; 2.21A {Pyrococcus horikoshii} PDB: 2ki7_A
Probab=23.10 E-value=97 Score=19.52 Aligned_cols=34 Identities=3% Similarity=0.028 Sum_probs=26.1
Q ss_pred CceEEEECCcEEEEecCCCCCCeeEEEEecCccCCccCCC
Q psy14209 12 NTWWFVTDNDVVAFPDIKPAAKHHTLVISKQHVLNAKVLT 51 (119)
Q Consensus 12 ~~~iv~e~~~~~a~~~~~p~~~gh~lViPk~H~~~~~~L~ 51 (119)
.+.+|.|+.+.+.+.. ..+.+|||.+..=..+++
T Consensus 67 ~GiVV~ETknTf~I~t------~~~k~VPK~~~vF~f~l~ 100 (127)
T 2zae_A 67 EGYVIDETRNMLVIAG------DRIWKVPKDVSIFEFEAD 100 (127)
T ss_dssp EEEEEEEETTEEEEES------SSEEEEESTTEEEEEECT
T ss_pred EEEEEEcccceEEEEc------CCEEEEECCCeEEEEEeC
Confidence 3568999999998886 388999999875444444
No 53
>2i6u_A Otcase, ornithine carbamoyltransferase; X-RAY crystallography, ornithine carbamyoltransferase, carbamoyl phosphate, L- norvaline; 2.20A {Mycobacterium tuberculosis} PDB: 2p2g_A
Probab=23.03 E-value=83 Score=22.75 Aligned_cols=25 Identities=20% Similarity=0.210 Sum_probs=18.1
Q ss_pred CccCCccCCCHhHHHHHHHHHHHHHHHH
Q psy14209 42 QHVLNAKVLTSEHKALVQWLEDLSAITY 69 (119)
Q Consensus 42 ~H~~~~~~L~~~e~~~l~~~~~~~~~~~ 69 (119)
+|.-++.||+.+|+ ..+++.|.++-
T Consensus 3 rhlls~~dls~~ei---~~ll~~A~~lk 27 (307)
T 2i6u_A 3 RHFLRDDDLSPAEQ---AEVLELAAELK 27 (307)
T ss_dssp CCBSSGGGSCHHHH---HHHHHHHHHHH
T ss_pred cccCchhhCCHHHH---HHHHHHHHHHH
Confidence 78999999999994 44455555544
No 54
>3r7f_A Aspartate carbamoyltransferase; aspartate transcarbamoylase, carbamoyl phosphate, transferas catalytic cycle; 2.10A {Bacillus subtilis} PDB: 3r7d_A 3r7l_A* 2at2_A
Probab=22.95 E-value=75 Score=23.01 Aligned_cols=25 Identities=16% Similarity=0.093 Sum_probs=18.0
Q ss_pred CccCCccCCCHhHHHHHHHHHHHHHHHH
Q psy14209 42 QHVLNAKVLTSEHKALVQWLEDLSAITY 69 (119)
Q Consensus 42 ~H~~~~~~L~~~e~~~l~~~~~~~~~~~ 69 (119)
+|.-++.|++.+|+ ..++..|.++-
T Consensus 2 rhlls~~dls~~ei---~~ll~~A~~lk 26 (304)
T 3r7f_A 2 KHLTTMSELSTEEI---KDLLQTAQELK 26 (304)
T ss_dssp CCBCCGGGSCHHHH---HHHHHHHHHHH
T ss_pred CccCchhhCCHHHH---HHHHHHHHHHH
Confidence 78889999999994 44555555544
No 55
>2dnf_A Doublecortin domain-containing protein 2; structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; NMR {Homo sapiens}
Probab=22.43 E-value=23 Score=21.60 Aligned_cols=28 Identities=7% Similarity=0.083 Sum_probs=22.9
Q ss_pred cEEEEecCCCCCCeeEEEEecCccCCcc
Q psy14209 21 DVVAFPDIKPAAKHHTLVISKQHVLNAK 48 (119)
Q Consensus 21 ~~~a~~~~~p~~~gh~lViPk~H~~~~~ 48 (119)
.+.++.+-.+..+|..++++++...++.
T Consensus 16 ~I~v~rNGD~~~~g~~v~i~~~~~~sfe 43 (108)
T 2dnf_A 16 TIFLIANGDLINPASRLLIPRKTLNQWD 43 (108)
T ss_dssp EEEECBTTCSSSCCEEEEECHHHHTCHH
T ss_pred EEEEEeCCCCCCCCEEEEECCccccCHH
Confidence 5677888889999999999988777663
No 56
>1pvv_A Otcase, ornithine carbamoyltransferase; dodecamer; 1.87A {Pyrococcus furiosus} SCOP: c.78.1.1 c.78.1.1 PDB: 1a1s_A
Probab=22.22 E-value=90 Score=22.66 Aligned_cols=26 Identities=12% Similarity=-0.013 Sum_probs=18.4
Q ss_pred cCccCCccCCCHhHHHHHHHHHHHHH
Q psy14209 41 KQHVLNAKVLTSEHKALVQWLEDLSA 66 (119)
Q Consensus 41 k~H~~~~~~L~~~e~~~l~~~~~~~~ 66 (119)
.+|.-++.|++.+|+..|-+.....+
T Consensus 7 ~rhlls~~dls~~ei~~ll~~A~~lk 32 (315)
T 1pvv_A 7 GRDLLCLQDYTAEEIWTILETAKMFK 32 (315)
T ss_dssp TCCBSCGGGSCHHHHHHHHHHHHHHH
T ss_pred CCCCcchhhCCHHHHHHHHHHHHHHH
Confidence 48999999999999655544443333
No 57
>1wgy_A RAP guanine nucleotide exchange factor 5; ubiquitin fold, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: d.15.1.5
Probab=22.07 E-value=44 Score=20.41 Aligned_cols=39 Identities=15% Similarity=0.083 Sum_probs=25.7
Q ss_pred eEEEECCcEEEEecCCCCCCeeEEEEecCccCCccCCCHhH
Q psy14209 14 WWFVTDNDVVAFPDIKPAAKHHTLVISKQHVLNAKVLTSEH 54 (119)
Q Consensus 14 ~iv~e~~~~~a~~~~~p~~~gh~lViPk~H~~~~~~L~~~e 54 (119)
+++++.+...++.-. ...|++.|.+|.|+..+.-|++++
T Consensus 61 k~~lqp~d~si~tsL--~~NgRLfvc~kd~~d~LtPlpeq~ 99 (104)
T 1wgy_A 61 KHELQPNDLVISKSL--EASGRIYVYRKDLADTLNPFAENS 99 (104)
T ss_dssp CCBCCTTSBSSCCSS--CSSCEEEEEECCSSSCCCCCCCCC
T ss_pred EeecCCcceEEEeec--cccceEEEeehHhcccccCCcccc
Confidence 444444444333322 235899999999999998887754
No 58
>3tpf_A Otcase, ornithine carbamoyltransferase; structural genomics, center for structural genomics of infec diseases, csgid, rossman fold; 2.70A {Campylobacter jejuni subsp}
Probab=21.68 E-value=94 Score=22.48 Aligned_cols=25 Identities=16% Similarity=0.133 Sum_probs=17.8
Q ss_pred CccCCccCCCHhHHHHHHHHHHHHHHHH
Q psy14209 42 QHVLNAKVLTSEHKALVQWLEDLSAITY 69 (119)
Q Consensus 42 ~H~~~~~~L~~~e~~~l~~~~~~~~~~~ 69 (119)
+|.-++.|++.+|+ ..++..|.++-
T Consensus 3 rhll~~~dls~~ei---~~ll~~A~~lk 27 (307)
T 3tpf_A 3 KHFLTLRDFSKEEI---LSLVNHASELK 27 (307)
T ss_dssp CCBSCGGGSCHHHH---HHHHHHHHHHH
T ss_pred CcCCchhhCCHHHH---HHHHHHHHHHH
Confidence 78999999999995 44444555443
No 59
>1oth_A Protein (ornithine transcarbamoylase); transferase; HET: PAO; 1.85A {Homo sapiens} SCOP: c.78.1.1 c.78.1.1 PDB: 1ep9_A 1fvo_A 1c9y_A* 1fb5_A
Probab=21.48 E-value=95 Score=22.62 Aligned_cols=26 Identities=23% Similarity=0.321 Sum_probs=18.2
Q ss_pred cCccCCccCCCHhHHHHHHHHHHHHH
Q psy14209 41 KQHVLNAKVLTSEHKALVQWLEDLSA 66 (119)
Q Consensus 41 k~H~~~~~~L~~~e~~~l~~~~~~~~ 66 (119)
.+|+-++.||+.+|+..+-+.....+
T Consensus 6 ~rhlls~~dls~~ei~~ll~~A~~lk 31 (321)
T 1oth_A 6 GRDLLTLKNFTGEEIKYMLWLSADLK 31 (321)
T ss_dssp TCCBSCGGGSCHHHHHHHHHHHHHHH
T ss_pred CCCCcchhhCCHHHHHHHHHHHHHHH
Confidence 48999999999999655444433333
No 60
>4ekn_B Aspartate carbamoyltransferase; atcase, aspartate transcarbamoylase, pyrimidine biosynthesis thermostability, substrate channeling; 2.50A {Methanocaldococcus jannaschii} PDB: 3e2p_A 2rgw_A
Probab=21.47 E-value=1.2e+02 Score=21.94 Aligned_cols=26 Identities=12% Similarity=-0.006 Sum_probs=18.0
Q ss_pred CccCCccCCCHhHHHHHHHHHHHHHH
Q psy14209 42 QHVLNAKVLTSEHKALVQWLEDLSAI 67 (119)
Q Consensus 42 ~H~~~~~~L~~~e~~~l~~~~~~~~~ 67 (119)
+|.-++.|++.+|+..+-+.....++
T Consensus 2 rhll~~~dls~~ei~~ll~~A~~lk~ 27 (306)
T 4ekn_B 2 KHLISMKDIGKEEILEILDEARKMEE 27 (306)
T ss_dssp CCBCCGGGCCHHHHHHHHHHHHHHHH
T ss_pred CccCchhhCCHHHHHHHHHHHHHHHh
Confidence 78899999999996555444333333
No 61
>1vlv_A Otcase, ornithine carbamoyltransferase; TM1097, structural genomics, protein structure initiative, PSI, joint center for structu genomics; 2.25A {Thermotoga maritima} SCOP: c.78.1.1 c.78.1.1
Probab=21.46 E-value=98 Score=22.60 Aligned_cols=27 Identities=7% Similarity=0.016 Sum_probs=18.7
Q ss_pred ecCccCCccCCCHhHHHHHHHHHHHHH
Q psy14209 40 SKQHVLNAKVLTSEHKALVQWLEDLSA 66 (119)
Q Consensus 40 Pk~H~~~~~~L~~~e~~~l~~~~~~~~ 66 (119)
..+|.-++.|++.+|+..|-+.....+
T Consensus 18 ~~rh~ls~~dls~~ei~~ll~~A~~lk 44 (325)
T 1vlv_A 18 KGRSLLTLLDFSPEEIRYLLDISKQVK 44 (325)
T ss_dssp TTCCBSCGGGSCHHHHHHHHHHHHHHH
T ss_pred cCCCccchhhCCHHHHHHHHHHHHHHH
Confidence 357999999999999655544433333
No 62
>3csu_A Protein (aspartate carbamoyltransferase); transferase (carbamoyl-P; 1.88A {Escherichia coli} SCOP: c.78.1.1 c.78.1.1 PDB: 1r0b_A* 1q95_A* 1raa_A* 1rab_A* 1rac_A* 1rad_A* 1rae_A* 1raf_A* 1rag_A* 1rah_A* 1rai_A* 1r0c_A* 1za2_A* 1za1_A* 2fzc_A* 2fzg_A* 2fzk_A* 2h3e_A* 2ipo_A* 2qg9_A ...
Probab=21.33 E-value=95 Score=22.50 Aligned_cols=26 Identities=12% Similarity=0.176 Sum_probs=18.4
Q ss_pred cCccCCccCCCHhHHHHHHHHHHHHHHHH
Q psy14209 41 KQHVLNAKVLTSEHKALVQWLEDLSAITY 69 (119)
Q Consensus 41 k~H~~~~~~L~~~e~~~l~~~~~~~~~~~ 69 (119)
.+|.-++.|++.+|+. .++..|.++-
T Consensus 6 ~rh~ls~~dls~~ei~---~ll~~A~~lk 31 (310)
T 3csu_A 6 QKHIISINDLSRDDLN---LVLATAAKLK 31 (310)
T ss_dssp TCCBCCGGGCCHHHHH---HHHHHHHHHH
T ss_pred CCCccchhhCCHHHHH---HHHHHHHHHH
Confidence 4799999999999954 4444455443
No 63
>1omh_A TRWC protein; protein-DNA complex, bacterial conjugation, relaxase, DNA replication, transferase/DNA complex; HET: DNA; 1.95A {Escherichia coli} SCOP: d.89.1.5 PDB: 1osb_A* 1qx0_A* 1s6m_A* 1zm5_A* 2cdm_A
Probab=20.94 E-value=37 Score=24.46 Aligned_cols=11 Identities=27% Similarity=0.386 Sum_probs=8.4
Q ss_pred ccceeEEEEec
Q psy14209 88 SIGHLHLHVIA 98 (119)
Q Consensus 88 ~v~HlH~Hiip 98 (119)
.-||+|.|++-
T Consensus 156 ~DP~lHtH~vv 166 (293)
T 1omh_A 156 RDPQLHTHAVI 166 (293)
T ss_dssp CCEEEEEEEEE
T ss_pred CCCCceeEEEE
Confidence 34899999763
No 64
>4h31_A Otcase, ornithine carbamoyltransferase; structural genomics, niaid, national institute of allergy AN infectious diseases; HET: PE5; 1.70A {Vibrio vulnificus} PDB: 3upd_A*
Probab=20.87 E-value=1.2e+02 Score=22.38 Aligned_cols=23 Identities=9% Similarity=0.105 Sum_probs=16.9
Q ss_pred cCccCCccCCCHhHHHHHHHHHH
Q psy14209 41 KQHVLNAKVLTSEHKALVQWLED 63 (119)
Q Consensus 41 k~H~~~~~~L~~~e~~~l~~~~~ 63 (119)
.||.-++.|++.+|+..+-+...
T Consensus 31 grhlLsi~dls~eei~~ll~~A~ 53 (358)
T 4h31_A 31 NRNFLKLLDFSTKEIQFLIDLSA 53 (358)
T ss_dssp TCCBCCGGGSCHHHHHHHHHHHH
T ss_pred CCCcCchhhCCHHHHHHHHHHHH
Confidence 47999999999999654444333
No 65
>1dxh_A Ornithine carbamoyltransferase; transcarbamylase; 2.50A {Pseudomonas aeruginosa} SCOP: c.78.1.1 c.78.1.1 PDB: 1ort_A
Probab=20.77 E-value=1e+02 Score=22.62 Aligned_cols=27 Identities=7% Similarity=-0.061 Sum_probs=19.0
Q ss_pred cCccCCccCCCHhHHHHHHHHHHHHHH
Q psy14209 41 KQHVLNAKVLTSEHKALVQWLEDLSAI 67 (119)
Q Consensus 41 k~H~~~~~~L~~~e~~~l~~~~~~~~~ 67 (119)
.+|.-++.|++.+|+..|-++....++
T Consensus 6 ~rh~Ls~~dls~~ei~~ll~~A~~lk~ 32 (335)
T 1dxh_A 6 NRNLLSLMHHSTRELRYLLDLSRDLKR 32 (335)
T ss_dssp TCCBSSSTTCCHHHHHHHHHHHHHHHH
T ss_pred CCCCCchHhCCHHHHHHHHHHHHHHHh
Confidence 589999999999996555444443333
No 66
>3sds_A Ornithine carbamoyltransferase, mitochondrial; structural genomics, seattle structural genomics center for infectious disease, ssgcid; 2.80A {Coccidioides immitis}
Probab=20.34 E-value=1.2e+02 Score=22.51 Aligned_cols=24 Identities=21% Similarity=0.171 Sum_probs=17.8
Q ss_pred ecCccCCccCCCHhHHHHHHHHHH
Q psy14209 40 SKQHVLNAKVLTSEHKALVQWLED 63 (119)
Q Consensus 40 Pk~H~~~~~~L~~~e~~~l~~~~~ 63 (119)
..+|+-++.||+.+|+..|-+...
T Consensus 22 ~~rhlLsi~dls~~ei~~ll~~A~ 45 (353)
T 3sds_A 22 TPRHLLSIADLTPTEFATLVRNAS 45 (353)
T ss_dssp CCCCBSCGGGSCHHHHHHHHHHHH
T ss_pred cCCCcCchhhCCHHHHHHHHHHHH
Confidence 468999999999999654444333
No 67
>1duv_G Octase-1, ornithine transcarbamoylase; enzyme-inhibitor complex, transferase; HET: PSQ; 1.70A {Escherichia coli} SCOP: c.78.1.1 c.78.1.1 PDB: 1akm_A* 2otc_A*
Probab=20.25 E-value=1e+02 Score=22.55 Aligned_cols=26 Identities=15% Similarity=0.056 Sum_probs=18.5
Q ss_pred cCccCCccCCCHhHHHHHHHHHHHHH
Q psy14209 41 KQHVLNAKVLTSEHKALVQWLEDLSA 66 (119)
Q Consensus 41 k~H~~~~~~L~~~e~~~l~~~~~~~~ 66 (119)
.+|.-++.|++.+|+..|-+.....+
T Consensus 5 ~rh~Ls~~dls~~ei~~ll~~A~~lk 30 (333)
T 1duv_G 5 HKHFLKLLDFTPAELNSLLQLAAKLK 30 (333)
T ss_dssp TCCBSCGGGSCHHHHHHHHHHHHHHH
T ss_pred CCCccchhhCCHHHHHHHHHHHHHHH
Confidence 58999999999999655544444333
No 68
>3grf_A Ornithine carbamoyltransferase; ornithine transcarbamoylase, arginine degradation pathway, giardia lamblia, drug target; 2.00A {Giardia intestinalis}
Probab=20.25 E-value=1e+02 Score=22.53 Aligned_cols=26 Identities=23% Similarity=0.263 Sum_probs=18.1
Q ss_pred cCccCCccCCCHhHHHHHHHHHHHHHHHH
Q psy14209 41 KQHVLNAKVLTSEHKALVQWLEDLSAITY 69 (119)
Q Consensus 41 k~H~~~~~~L~~~e~~~l~~~~~~~~~~~ 69 (119)
.+|+-++.|++.+|+. .++..|.++-
T Consensus 7 ~rhlls~~dls~~ei~---~ll~~A~~lk 32 (328)
T 3grf_A 7 TRHLLTISALCPKELA---YLIDRALDMK 32 (328)
T ss_dssp SCCBSSGGGSCHHHHH---HHHHHHHHHH
T ss_pred CcccCchhhCCHHHHH---HHHHHHHHHH
Confidence 4899999999999954 4444454443
Done!