RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy14209
(119 letters)
>d1guqa2 d.13.1.2 (A:178-348) Galactose-1-phosphate
uridylyltransferase {Escherichia coli [TaxId: 562]}
Length = 171
Score = 45.8 bits (108), Expect = 8e-08
Identities = 21/97 (21%), Positives = 31/97 (31%), Gaps = 6/97 (6%)
Query: 10 KPNTWWFVTDNDVVAFPDIKPAAKHHTLVISKQHVLNAKVLTSEHKALVQWLEDLSAITY 69
+ V +A A TL++ K HVL LT ++ + Y
Sbjct: 30 ADGSRTVVETEHWLAVVPYWAAWPFETLLLPKAHVLRITDLTDAQRSDLALALKKLTSRY 89
Query: 70 --LCLMVIFHRYGFHWPPF----YSIGHLHLHVIAPV 100
L + G+H PF LH H P+
Sbjct: 90 DNLFQCSFPYSMGWHGAPFNGEENQHWQLHAHFYPPL 126
>d1vlra1 d.13.1.3 (A:146-337) mRNA decapping enzyme DcpS C-terminal
domain {Mouse (Mus musculus) [TaxId: 10090]}
Length = 192
Score = 45.9 bits (109), Expect = 8e-08
Identities = 19/90 (21%), Positives = 33/90 (36%), Gaps = 12/90 (13%)
Query: 19 DNDVVAFPDIK----PAAKHHTLVISKQHVL-NAKVLTSEHKALVQWLEDLSAITYLCLM 73
+ V PD+K + + I + + + + LT EH L++ + +
Sbjct: 51 SDGFVLIPDLKWNQQQLDDLYLIAICHRRGIRSLRDLTPEHLPLLRNILRE-GQEAILKR 109
Query: 74 VIFH----RYGFHWPPFYSIGHLHLHVIAP 99
R H+ P Y HLH+H A
Sbjct: 110 YQVTGDRLRVYLHYLPSYY--HLHVHFTAL 137
>d1emsa1 d.13.1.1 (A:281-440) NIT-FHIT fusion protein, C-terminal
domain {Nematode (Caenorhabditis elegans) [TaxId: 6239]}
Length = 160
Score = 42.5 bits (99), Expect = 1e-06
Identities = 19/92 (20%), Positives = 32/92 (34%), Gaps = 7/92 (7%)
Query: 11 PNTWWFVTDNDVVAFPDIKPAAKHHTLVISKQHVLNAKVLTSEHKA-----LVQWLEDLS 65
P F + F ++KP H LV K+ V LT A + L
Sbjct: 27 PADHIFYSTPHSFVFVNLKPVTDGHVLVSPKRVVPRLTDLTDAETADLFIVAKKVQAMLE 86
Query: 66 AITYLCLMVIFHRYGFHWPPFYSIGHLHLHVI 97
+ I + G ++ H+H+H++
Sbjct: 87 KHHNVTSTTICVQDGKDA--GQTVPHVHIHIL 116
>d1kpfa_ d.13.1.1 (A:) Protein kinase C inhibitor-1, PKCI-1 {Human
(Homo sapiens) [TaxId: 9606]}
Length = 111
Score = 39.7 bits (92), Expect = 9e-06
Identities = 25/86 (29%), Positives = 38/86 (44%), Gaps = 9/86 (10%)
Query: 19 DNDVVAFPDIKPAAKHHTLVISKQHVLNAKVLTSEHKALVQWLEDLSAITYLCLMVIFHR 78
D+ +AF DI P A H LVI K+H+ V + ++L L L + C +
Sbjct: 20 DDRCLAFHDISPQAPTHFLVIPKKHISQISVAEDDDESL---LGHLMIVGKKCAADLGLN 76
Query: 79 YGF------HWPPFYSIGHLHLHVIA 98
G+ S+ H+HLHV+
Sbjct: 77 KGYRMVVNEGSDGGQSVYHVHLHVLG 102
>d1xqua_ d.13.1.1 (A:) Putative hydrolase {Clostridium thermocellum
[TaxId: 1515]}
Length = 113
Score = 37.9 bits (87), Expect = 4e-05
Identities = 20/85 (23%), Positives = 35/85 (41%), Gaps = 4/85 (4%)
Query: 19 DNDVVAFPDIKPAAKHHTLVISKQHVLNAKVLTSEHKALVQWLEDLSAITYLCLMV---- 74
D V+A DI PAA H L+I K+H+ N K + + ++ + + L +
Sbjct: 22 DERVIAIKDINPAAPVHVLIIPKEHIANVKEINESNAQILIDIHKAANKVAEDLGIAEKG 81
Query: 75 IFHRYGFHWPPFYSIGHLHLHVIAP 99
++ HLH H++
Sbjct: 82 YRLITNCGVAAGQTVFHLHYHLLGG 106
>d2oika1 d.13.1.1 (A:6-144) Histidine triad protein Mfla2506
{Methylobacillus flagellatus [TaxId: 405]}
Length = 139
Score = 36.0 bits (82), Expect = 3e-04
Identities = 12/80 (15%), Positives = 18/80 (22%), Gaps = 2/80 (2%)
Query: 19 DNDVVAFPDIKPAAKHHTLVISKQHVLNAKVLTSEHKALVQWLEDLSAITYLCLMVIFHR 78
D VI +HV L + + + +M
Sbjct: 20 DALCRVVHVENQDYPGFCRVILNRHVKEMSDLRPAERDHLMLVVFAVEEAVREVMRPDKI 79
Query: 79 YGFHWPPFYSIGHLHLHVIA 98
H+H HVI
Sbjct: 80 NLASL--GNMTPHVHWHVIP 97
>d1fita_ d.13.1.1 (A:) FHIT (fragile histidine triad protein)
{Human (Homo sapiens) [TaxId: 9606]}
Length = 146
Score = 35.2 bits (80), Expect = 6e-04
Identities = 13/82 (15%), Positives = 23/82 (28%), Gaps = 3/82 (3%)
Query: 19 DNDVVAFPDIKPAAKHHTLVISKQHVLNAKVLTSEHKALVQWLEDLSAITY---LCLMVI 75
A + KP H LV + V L + A + +
Sbjct: 18 TELSFALVNRKPVVPGHVLVCPLRPVERFHDLRPDEVADLFQTTQRVGTVVEKHFHGTSL 77
Query: 76 FHRYGFHWPPFYSIGHLHLHVI 97
++ H+H+HV+
Sbjct: 78 TFSMQDGPEAGQTVKHVHVHVL 99
>d1y23a_ d.13.1.1 (A:) Hit {Bacillus subtilis [TaxId: 1423]}
Length = 139
Score = 34.1 bits (77), Expect = 0.001
Identities = 22/82 (26%), Positives = 32/82 (39%), Gaps = 3/82 (3%)
Query: 19 DNDVVAFPDIKPAAKHHTLVISKQHVLN-AKVLTSEHKALVQWLEDLSAITYLCLMVIFH 77
D V+AF DI K HTLVI K H+ N + K + ++ I
Sbjct: 21 DEHVLAFLDISQVTKGHTLVIPKTHIENVYEFTDELAKQYFHAVPKIARAIRDEFEPIGL 80
Query: 78 RYGFH--WPPFYSIGHLHLHVI 97
+ S+ H H+H+I
Sbjct: 81 NTLNNNGEKAGQSVFHYHMHII 102
>d1z84a2 d.13.1.2 (A:196-351) Galactose-1-phosphate
uridylyltransferase {Thale cress (Arabidopsis thaliana)
[TaxId: 3702]}
Length = 156
Score = 31.6 bits (71), Expect = 0.010
Identities = 12/90 (13%), Positives = 21/90 (23%), Gaps = 7/90 (7%)
Query: 19 DNDVVAFPDIKPAAKHHTLVISKQHVLNAKVLTSEHKALVQWLEDLSAITYLCLMVIFHR 78
+ V+ +I K H + L + L L +
Sbjct: 36 SSHFVSVAPFAATYPFEIWIIPKDHSSHFHHLDDVKAVDLGGLLKLMLQKIAKQLNDPPY 95
Query: 79 YG-FHWPPF------YSIGHLHLHVIAPVS 101
H P H L ++ +S
Sbjct: 96 NYMIHTSPLKVTESQLPYTHWFLQIVPQLS 125
>d2a5yb2 a.77.1.3 (B:1-108) Cell death protein 4, CED-4
{Caenorhabditis elegans [TaxId: 6239]}
Length = 108
Score = 27.7 bits (61), Expect = 0.19
Identities = 10/29 (34%), Positives = 15/29 (51%)
Query: 48 KVLTSEHKALVQWLEDLSAITYLCLMVIF 76
+ L++ H L+ E A+TYL IF
Sbjct: 8 RALSTAHTRLIHDFEPRDALTYLEGKNIF 36
>d1aora1 a.110.1.1 (A:211-605) Aldehyde ferredoxin oxidoreductase
{Archaeon Pyrococcus furiosus [TaxId: 2261]}
Length = 395
Score = 26.0 bits (57), Expect = 1.2
Identities = 7/40 (17%), Positives = 18/40 (45%), Gaps = 1/40 (2%)
Query: 51 TSEHKA-LVQWLEDLSAITYLCLMVIFHRYGFHWPPFYSI 89
S+ K ++ +DL+A+ + +F +G + +
Sbjct: 260 VSDDKIKMLILFQDLTALIDSAGLCLFTTFGLGADDYRDL 299
>d1zbpa1 e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {Vibrio
parahaemolyticus [TaxId: 670]}
Length = 264
Score = 24.6 bits (53), Expect = 3.2
Identities = 6/44 (13%), Positives = 13/44 (29%)
Query: 60 WLEDLSAITYLCLMVIFHRYGFHWPPFYSIGHLHLHVIAPVSEM 103
+ D+ + + + P SI L + + E
Sbjct: 143 DVRDIDDRLGGYIELFSTAGNYFLVPIASINTLEIKSATSLLES 186
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.329 0.139 0.479
Gapped
Lambda K H
0.267 0.0560 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 494,268
Number of extensions: 19342
Number of successful extensions: 106
Number of sequences better than 10.0: 1
Number of HSP's gapped: 98
Number of HSP's successfully gapped: 24
Length of query: 119
Length of database: 2,407,596
Length adjustment: 74
Effective length of query: 45
Effective length of database: 1,391,576
Effective search space: 62620920
Effective search space used: 62620920
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.8 bits)
S2: 47 (22.3 bits)