BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy1421
(89 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1RHW|A Chain A, The Solution Structure Of The Ph-Induced Monomer Of
Dynein Light Chain Lc8 From Drosophila
pdb|2P2T|A Chain A, Crystal Structure Of Dynein Light Chain Lc8 Bound To
Residues 123-138 Of Intermediate Chain Ic74
pdb|3E2B|A Chain A, Crystal Structure Of Dynein Light Chain Lc8 In Complex
With A Peptide Derived From Swallow
pdb|3BRI|A Chain A, Crystal Structure Of Apo-Lc8
pdb|3FM7|E Chain E, Quaternary Structure Of Drosophila Melanogaster
IcTCTEX-1LC8; Allosteric Interactions Of Dynein Light
Chains With Dynein Intermediate Chain
pdb|3FM7|F Chain F, Quaternary Structure Of Drosophila Melanogaster
IcTCTEX-1LC8; Allosteric Interactions Of Dynein Light
Chains With Dynein Intermediate Chain
pdb|3GLW|A Chain A, Quaternary Structure Of Drosophila Melanogaster
IcTCTEX-1LC8; Allosteric Interactions Of Dynein Light
Chains With Dynein Intermediate Chain
Length = 89
Score = 189 bits (480), Expect = 3e-49, Method: Compositional matrix adjust.
Identities = 89/89 (100%), Positives = 89/89 (100%)
Query: 1 MSDRKAVIKNADMSEEMQQDAVDCATQALEKYNIEKDIAAYIKKEFDKKYNPTWHCIVGR 60
MSDRKAVIKNADMSEEMQQDAVDCATQALEKYNIEKDIAAYIKKEFDKKYNPTWHCIVGR
Sbjct: 1 MSDRKAVIKNADMSEEMQQDAVDCATQALEKYNIEKDIAAYIKKEFDKKYNPTWHCIVGR 60
Query: 61 NFGSYVTHETRHFIYFYLGQVAILLFKSG 89
NFGSYVTHETRHFIYFYLGQVAILLFKSG
Sbjct: 61 NFGSYVTHETRHFIYFYLGQVAILLFKSG 89
>pdb|2PG1|A Chain A, Structural Analysis Of A Cytoplasmic Dynein Light Chain-
Intermediate Chain Complex
pdb|2PG1|B Chain B, Structural Analysis Of A Cytoplasmic Dynein Light Chain-
Intermediate Chain Complex
pdb|2PG1|C Chain C, Structural Analysis Of A Cytoplasmic Dynein Light Chain-
Intermediate Chain Complex
pdb|2PG1|D Chain D, Structural Analysis Of A Cytoplasmic Dynein Light Chain-
Intermediate Chain Complex
pdb|3DVT|A Chain A, Biochemical And Structural Characterization Of The Pak1-
Lc8 Interaction
pdb|3DVT|B Chain B, Biochemical And Structural Characterization Of The Pak1-
Lc8 Interaction
pdb|3DVT|C Chain C, Biochemical And Structural Characterization Of The Pak1-
Lc8 Interaction
pdb|3DVT|D Chain D, Biochemical And Structural Characterization Of The Pak1-
Lc8 Interaction
pdb|3DVT|E Chain E, Biochemical And Structural Characterization Of The Pak1-
Lc8 Interaction
pdb|3DVT|F Chain F, Biochemical And Structural Characterization Of The Pak1-
Lc8 Interaction
Length = 91
Score = 189 bits (480), Expect = 4e-49, Method: Compositional matrix adjust.
Identities = 89/89 (100%), Positives = 89/89 (100%)
Query: 1 MSDRKAVIKNADMSEEMQQDAVDCATQALEKYNIEKDIAAYIKKEFDKKYNPTWHCIVGR 60
MSDRKAVIKNADMSEEMQQDAVDCATQALEKYNIEKDIAAYIKKEFDKKYNPTWHCIVGR
Sbjct: 3 MSDRKAVIKNADMSEEMQQDAVDCATQALEKYNIEKDIAAYIKKEFDKKYNPTWHCIVGR 62
Query: 61 NFGSYVTHETRHFIYFYLGQVAILLFKSG 89
NFGSYVTHETRHFIYFYLGQVAILLFKSG
Sbjct: 63 NFGSYVTHETRHFIYFYLGQVAILLFKSG 91
>pdb|3BRL|A Chain A, Crystal Structure Of Lc8 S88e SWA
Length = 89
Score = 187 bits (475), Expect = 1e-48, Method: Compositional matrix adjust.
Identities = 88/89 (98%), Positives = 88/89 (98%)
Query: 1 MSDRKAVIKNADMSEEMQQDAVDCATQALEKYNIEKDIAAYIKKEFDKKYNPTWHCIVGR 60
MSDRKAVIKNADMSEEMQQDAVDCATQALEKYNIEKDIAAYIKKEFDKKYNPTWHCIVGR
Sbjct: 1 MSDRKAVIKNADMSEEMQQDAVDCATQALEKYNIEKDIAAYIKKEFDKKYNPTWHCIVGR 60
Query: 61 NFGSYVTHETRHFIYFYLGQVAILLFKSG 89
NFGSYVTHETRHFIYFYLGQVAILLFK G
Sbjct: 61 NFGSYVTHETRHFIYFYLGQVAILLFKEG 89
>pdb|3DVH|A Chain A, Lc8 Point Mutant K36p
pdb|3DVH|B Chain B, Lc8 Point Mutant K36p
pdb|3DVH|C Chain C, Lc8 Point Mutant K36p
pdb|3DVP|A Chain A, Pak1 Peptide Bound Lc8
pdb|3DVP|B Chain B, Pak1 Peptide Bound Lc8
Length = 91
Score = 187 bits (475), Expect = 1e-48, Method: Compositional matrix adjust.
Identities = 88/89 (98%), Positives = 88/89 (98%)
Query: 1 MSDRKAVIKNADMSEEMQQDAVDCATQALEKYNIEKDIAAYIKKEFDKKYNPTWHCIVGR 60
MSDRKAVIKNADMSEEMQQDAVDCATQALEKYNIE DIAAYIKKEFDKKYNPTWHCIVGR
Sbjct: 3 MSDRKAVIKNADMSEEMQQDAVDCATQALEKYNIEPDIAAYIKKEFDKKYNPTWHCIVGR 62
Query: 61 NFGSYVTHETRHFIYFYLGQVAILLFKSG 89
NFGSYVTHETRHFIYFYLGQVAILLFKSG
Sbjct: 63 NFGSYVTHETRHFIYFYLGQVAILLFKSG 91
>pdb|1RE6|A Chain A, Localisation Of Dynein Light Chains 1 And 2 And Their
Pro- Apoptotic Ligands
pdb|1RE6|B Chain B, Localisation Of Dynein Light Chains 1 And 2 And Their
Pro- Apoptotic Ligands
Length = 94
Score = 185 bits (470), Expect = 5e-48, Method: Compositional matrix adjust.
Identities = 86/89 (96%), Positives = 89/89 (100%)
Query: 1 MSDRKAVIKNADMSEEMQQDAVDCATQALEKYNIEKDIAAYIKKEFDKKYNPTWHCIVGR 60
MSDRKAVIKNADMSE+MQQDAVDCATQA+EKYNIEKDIAAYIKKEFDKKYNPTWHCIVGR
Sbjct: 6 MSDRKAVIKNADMSEDMQQDAVDCATQAMEKYNIEKDIAAYIKKEFDKKYNPTWHCIVGR 65
Query: 61 NFGSYVTHETRHFIYFYLGQVAILLFKSG 89
NFGSYVTHET+HFIYFYLGQVAILLFKSG
Sbjct: 66 NFGSYVTHETKHFIYFYLGQVAILLFKSG 94
>pdb|1PWJ|A Chain A, Structure Of The Monomeric 8-Kda Dynein Light Chain And
Mechanism Of Domain Swapped Dimer Assembly
pdb|2XQQ|A Chain A, Human Dynein Light Chain (Dynll2) In Complex With An In
Vitro Evolved Peptide (Ac-Srgtqte).
pdb|2XQQ|B Chain B, Human Dynein Light Chain (Dynll2) In Complex With An In
Vitro Evolved Peptide (Ac-Srgtqte).
pdb|2XQQ|C Chain C, Human Dynein Light Chain (Dynll2) In Complex With An In
Vitro Evolved Peptide (Ac-Srgtqte).
pdb|2XQQ|D Chain D, Human Dynein Light Chain (Dynll2) In Complex With An In
Vitro Evolved Peptide (Ac-Srgtqte)
Length = 89
Score = 185 bits (470), Expect = 5e-48, Method: Compositional matrix adjust.
Identities = 86/89 (96%), Positives = 89/89 (100%)
Query: 1 MSDRKAVIKNADMSEEMQQDAVDCATQALEKYNIEKDIAAYIKKEFDKKYNPTWHCIVGR 60
MSDRKAVIKNADMSE+MQQDAVDCATQA+EKYNIEKDIAAYIKKEFDKKYNPTWHCIVGR
Sbjct: 1 MSDRKAVIKNADMSEDMQQDAVDCATQAMEKYNIEKDIAAYIKKEFDKKYNPTWHCIVGR 60
Query: 61 NFGSYVTHETRHFIYFYLGQVAILLFKSG 89
NFGSYVTHET+HFIYFYLGQVAILLFKSG
Sbjct: 61 NFGSYVTHETKHFIYFYLGQVAILLFKSG 89
>pdb|3P8M|A Chain A, Human Dynein Light Chain (Dynll2) In Complex With An In
Vitro Evolved Peptide Dimerized By Leucine Zipper
pdb|3P8M|B Chain B, Human Dynein Light Chain (Dynll2) In Complex With An In
Vitro Evolved Peptide Dimerized By Leucine Zipper
Length = 92
Score = 185 bits (470), Expect = 5e-48, Method: Compositional matrix adjust.
Identities = 86/89 (96%), Positives = 89/89 (100%)
Query: 1 MSDRKAVIKNADMSEEMQQDAVDCATQALEKYNIEKDIAAYIKKEFDKKYNPTWHCIVGR 60
MSDRKAVIKNADMSE+MQQDAVDCATQA+EKYNIEKDIAAYIKKEFDKKYNPTWHCIVGR
Sbjct: 4 MSDRKAVIKNADMSEDMQQDAVDCATQAMEKYNIEKDIAAYIKKEFDKKYNPTWHCIVGR 63
Query: 61 NFGSYVTHETRHFIYFYLGQVAILLFKSG 89
NFGSYVTHET+HFIYFYLGQVAILLFKSG
Sbjct: 64 NFGSYVTHETKHFIYFYLGQVAILLFKSG 92
>pdb|1F3C|A Chain A, Refined Solution Structure Of 8kda Dynein Light Chain
(Dlc8)
pdb|1F3C|B Chain B, Refined Solution Structure Of 8kda Dynein Light Chain
(Dlc8)
pdb|1F95|A Chain A, Solution Structure Of Dynein Light Chain 8 (Dlc8) And
Bim Peptide Complex
pdb|1F95|B Chain B, Solution Structure Of Dynein Light Chain 8 (Dlc8) And
Bim Peptide Complex
pdb|1F96|A Chain A, Solution Structure Of Dynein Light Chain 8 (Dlc8) And
Nnos Peptide Complex
pdb|1F96|B Chain B, Solution Structure Of Dynein Light Chain 8 (Dlc8) And
Nnos Peptide Complex
Length = 89
Score = 181 bits (458), Expect = 1e-46, Method: Compositional matrix adjust.
Identities = 84/89 (94%), Positives = 88/89 (98%)
Query: 1 MSDRKAVIKNADMSEEMQQDAVDCATQALEKYNIEKDIAAYIKKEFDKKYNPTWHCIVGR 60
M DRKAVIKNADMSEEMQQD+V+CATQALEKYNIEKDIAA+IKKEFDKKYNPTWHCIVGR
Sbjct: 1 MCDRKAVIKNADMSEEMQQDSVECATQALEKYNIEKDIAAHIKKEFDKKYNPTWHCIVGR 60
Query: 61 NFGSYVTHETRHFIYFYLGQVAILLFKSG 89
NFGSYVTHET+HFIYFYLGQVAILLFKSG
Sbjct: 61 NFGSYVTHETKHFIYFYLGQVAILLFKSG 89
>pdb|1PWK|A Chain A, Structure Of The Monomeric 8-Kda Dynein Light Chain And
Mechanism Of Domain Swapped Dimer Assembly
Length = 91
Score = 180 bits (457), Expect = 2e-46, Method: Compositional matrix adjust.
Identities = 86/91 (94%), Positives = 89/91 (97%), Gaps = 2/91 (2%)
Query: 1 MSDRKAVIKNADMSEEMQQDAVDCATQALEKYNIEKDIAAYIKKEFDKKYNPTWHCIVGR 60
MSDRKAVIKNADMSE+MQQDAVDCATQA+EKYNIEKDIAAYIKKEFDKKYNPTWHCIVGR
Sbjct: 1 MSDRKAVIKNADMSEDMQQDAVDCATQAMEKYNIEKDIAAYIKKEFDKKYNPTWHCIVGR 60
Query: 61 --NFGSYVTHETRHFIYFYLGQVAILLFKSG 89
NFGSYVTHET+HFIYFYLGQVAILLFKSG
Sbjct: 61 SGNFGSYVTHETKHFIYFYLGQVAILLFKSG 91
>pdb|1CMI|A Chain A, Structure Of The Human PinLC8 DIMER WITH A BOUND PEPTIDE
pdb|1CMI|B Chain B, Structure Of The Human PinLC8 DIMER WITH A BOUND PEPTIDE
Length = 85
Score = 174 bits (442), Expect = 8e-45, Method: Compositional matrix adjust.
Identities = 81/85 (95%), Positives = 85/85 (100%)
Query: 5 KAVIKNADMSEEMQQDAVDCATQALEKYNIEKDIAAYIKKEFDKKYNPTWHCIVGRNFGS 64
KAVIKNADMSEEMQQD+V+CATQALEKYNIEKDIAA+IKKEFDKKYNPTWHCIVGRNFGS
Sbjct: 1 KAVIKNADMSEEMQQDSVECATQALEKYNIEKDIAAHIKKEFDKKYNPTWHCIVGRNFGS 60
Query: 65 YVTHETRHFIYFYLGQVAILLFKSG 89
YVTHET+HFIYFYLGQVAILLFKSG
Sbjct: 61 YVTHETKHFIYFYLGQVAILLFKSG 85
>pdb|3RJS|A Chain A, Crystal Structure Of Dynein Light Chain 8a (Dlc8) From
Toxoplasma Gondii At 1.5 A Resolution
Length = 89
Score = 172 bits (436), Expect = 5e-44, Method: Compositional matrix adjust.
Identities = 76/89 (85%), Positives = 86/89 (96%)
Query: 1 MSDRKAVIKNADMSEEMQQDAVDCATQALEKYNIEKDIAAYIKKEFDKKYNPTWHCIVGR 60
M+DRKAVIKNADM E++QQDA+DCA QALEKYNIEKDIAA+IKKEFD+K+NPTWHC+VGR
Sbjct: 1 MADRKAVIKNADMPEDLQQDAIDCANQALEKYNIEKDIAAFIKKEFDRKHNPTWHCVVGR 60
Query: 61 NFGSYVTHETRHFIYFYLGQVAILLFKSG 89
NFGSYVTHET HFIYFY+GQVA+LLFKSG
Sbjct: 61 NFGSYVTHETHHFIYFYIGQVAVLLFKSG 89
>pdb|1YO3|A Chain A, 1.65 Angstrom Structure Of The Dynein Light Chain 1 From
Plasmodium Falciparum
pdb|1YO3|B Chain B, 1.65 Angstrom Structure Of The Dynein Light Chain 1 From
Plasmodium Falciparum
pdb|1YO3|C Chain C, 1.65 Angstrom Structure Of The Dynein Light Chain 1 From
Plasmodium Falciparum
Length = 102
Score = 159 bits (401), Expect = 5e-40, Method: Compositional matrix adjust.
Identities = 69/89 (77%), Positives = 83/89 (93%)
Query: 1 MSDRKAVIKNADMSEEMQQDAVDCATQALEKYNIEKDIAAYIKKEFDKKYNPTWHCIVGR 60
+ R +V+KN DM+EEMQ DA+DCA QAL+KYN+EKDIAA+IKKEFD+KY+PTWHC+VGR
Sbjct: 14 LVPRGSVVKNVDMTEEMQIDAIDCANQALQKYNVEKDIAAHIKKEFDRKYDPTWHCVVGR 73
Query: 61 NFGSYVTHETRHFIYFYLGQVAILLFKSG 89
NFGSYVTHET++FIYFY+GQVAILLFKSG
Sbjct: 74 NFGSYVTHETKNFIYFYIGQVAILLFKSG 102
>pdb|4DS1|A Chain A, The Structure Of A Yeast Dyn2-Nup159 Complex And The
Molecular Basis For The Dynein Light Chain - Nuclear
Pore Interaction
pdb|4DS1|C Chain C, The Structure Of A Yeast Dyn2-Nup159 Complex And The
Molecular Basis For The Dynein Light Chain - Nuclear
Pore Interaction
Length = 97
Score = 104 bits (259), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 44/91 (48%), Positives = 67/91 (73%), Gaps = 3/91 (3%)
Query: 1 MSDRK---AVIKNADMSEEMQQDAVDCATQALEKYNIEKDIAAYIKKEFDKKYNPTWHCI 57
MSD ++K +D+++++++D + + AL+KY +E+DIA +KK+ D KY TWH I
Sbjct: 6 MSDENKSTPIVKASDITDKLKEDILTISKDALDKYQLERDIAGTVKKQLDVKYGNTWHVI 65
Query: 58 VGRNFGSYVTHETRHFIYFYLGQVAILLFKS 88
VG+NFGSYVTHE HF+YFY+G +A L+FK+
Sbjct: 66 VGKNFGSYVTHEKGHFVYFYIGPLAFLVFKT 96
>pdb|2V4J|B Chain B, The Crystal Structure Of Desulfovibrio Vulgaris
Dissimilatory Sulfite Reductase Bound To Dsrc Provides
Novel Insights Into The Mechanism Of Sulfate
Respiration
pdb|2V4J|E Chain E, The Crystal Structure Of Desulfovibrio Vulgaris
Dissimilatory Sulfite Reductase Bound To Dsrc Provides
Novel Insights Into The Mechanism Of Sulfate
Respiration
Length = 381
Score = 29.6 bits (65), Expect = 0.41, Method: Composition-based stats.
Identities = 13/38 (34%), Positives = 23/38 (60%)
Query: 32 YNIEKDIAAYIKKEFDKKYNPTWHCIVGRNFGSYVTHE 69
YN EK +A I +K++ + ++ +NFGS++ HE
Sbjct: 8 YNPEKPMANRITDIGPRKFDEFFPPVIAKNFGSWLYHE 45
>pdb|3M6K|A Chain A, Crystal Structure Of N-Terminal 44 Kda Fragment Of
Topoisomerase V In The Presence Of Guanidium
Hydrochloride
pdb|3M6K|B Chain B, Crystal Structure Of N-Terminal 44 Kda Fragment Of
Topoisomerase V In The Presence Of Guanidium
Hydrochloride
pdb|3M6Z|A Chain A, Crystal Structure Of An N-Terminal 44 Kda Fragment Of
Topoisomerase V In The Presence Of Guanidium
Hydrochloride
pdb|3M6Z|B Chain B, Crystal Structure Of An N-Terminal 44 Kda Fragment Of
Topoisomerase V In The Presence Of Guanidium
Hydrochloride
pdb|3M7D|A Chain A, Crystal Structure Of An N-Terminal 44 Kda Fragment Of
Topoisomerase V In The Presence Of Dioxane
Length = 380
Score = 29.3 bits (64), Expect = 0.52, Method: Composition-based stats.
Identities = 11/35 (31%), Positives = 21/35 (60%)
Query: 13 MSEEMQQDAVDCATQALEKYNIEKDIAAYIKKEFD 47
M ++Q V+CA + ++Y I +D+A + + FD
Sbjct: 286 MRRYLEQRIVECALKLQDRYGIREDVALCLARAFD 320
>pdb|2CSD|A Chain A, Crystal Structure Of Topoisomerase V (61 Kda Fragment)
pdb|2CSD|B Chain B, Crystal Structure Of Topoisomerase V (61 Kda Fragment)
Length = 519
Score = 29.3 bits (64), Expect = 0.53, Method: Composition-based stats.
Identities = 11/35 (31%), Positives = 21/35 (60%)
Query: 13 MSEEMQQDAVDCATQALEKYNIEKDIAAYIKKEFD 47
M ++Q V+CA + ++Y I +D+A + + FD
Sbjct: 286 MRRYLEQRIVECALKLQDRYGIREDVALCLARAFD 320
>pdb|4GFJ|A Chain A, Crystal Structure Of Topo-78, An N-Terminal 78kda Fragment
Of Topoisomerase V
Length = 685
Score = 29.3 bits (64), Expect = 0.54, Method: Composition-based stats.
Identities = 11/35 (31%), Positives = 21/35 (60%)
Query: 13 MSEEMQQDAVDCATQALEKYNIEKDIAAYIKKEFD 47
M ++Q V+CA + ++Y I +D+A + + FD
Sbjct: 286 MRRYLEQRIVECALKLQDRYGIREDVALCLARAFD 320
>pdb|3T9N|A Chain A, Crystal Structure Of A Membrane Protein
pdb|3T9N|B Chain B, Crystal Structure Of A Membrane Protein
pdb|3T9N|C Chain C, Crystal Structure Of A Membrane Protein
pdb|3T9N|D Chain D, Crystal Structure Of A Membrane Protein
pdb|3T9N|E Chain E, Crystal Structure Of A Membrane Protein
pdb|3T9N|F Chain F, Crystal Structure Of A Membrane Protein
pdb|3T9N|G Chain G, Crystal Structure Of A Membrane Protein
Length = 282
Score = 29.3 bits (64), Expect = 0.55, Method: Compositional matrix adjust.
Identities = 15/44 (34%), Positives = 24/44 (54%)
Query: 6 AVIKNADMSEEMQQDAVDCATQALEKYNIEKDIAAYIKKEFDKK 49
V+ DM + V TQ ++K+ +E+DI +KK FD+K
Sbjct: 220 TVLGITDMQDSKLVIMVYAKTQPMQKWAVERDIRYRVKKMFDQK 263
>pdb|3UDC|A Chain A, Crystal Structure Of A Membrane Protein
pdb|3UDC|B Chain B, Crystal Structure Of A Membrane Protein
pdb|3UDC|C Chain C, Crystal Structure Of A Membrane Protein
pdb|3UDC|D Chain D, Crystal Structure Of A Membrane Protein
pdb|3UDC|E Chain E, Crystal Structure Of A Membrane Protein
pdb|3UDC|F Chain F, Crystal Structure Of A Membrane Protein
pdb|3UDC|G Chain G, Crystal Structure Of A Membrane Protein
Length = 285
Score = 28.9 bits (63), Expect = 0.70, Method: Compositional matrix adjust.
Identities = 15/44 (34%), Positives = 24/44 (54%)
Query: 6 AVIKNADMSEEMQQDAVDCATQALEKYNIEKDIAAYIKKEFDKK 49
V+ DM + V TQ ++K+ +E+DI +KK FD+K
Sbjct: 220 TVLGITDMQDSKLVIMVYAKTQPMQKWAVERDIRYRVKKMFDQK 263
>pdb|2CSB|A Chain A, Crystal Structure Of Topoisomerase V From Methanopyrus
Kandleri (61 Kda Fragment)
pdb|2CSB|B Chain B, Crystal Structure Of Topoisomerase V From Methanopyrus
Kandleri (61 Kda Fragment)
Length = 519
Score = 28.5 bits (62), Expect = 1.1, Method: Composition-based stats.
Identities = 10/31 (32%), Positives = 20/31 (64%)
Query: 17 MQQDAVDCATQALEKYNIEKDIAAYIKKEFD 47
++Q V+CA + ++Y I +D+A + + FD
Sbjct: 290 LEQRIVECALKLQDRYGIREDVALCLARAFD 320
>pdb|1T72|A Chain A, Crystal Structure Of Phosphate Transport System Protein
Phou From Aquifex Aeolicus
pdb|1T72|B Chain B, Crystal Structure Of Phosphate Transport System Protein
Phou From Aquifex Aeolicus
pdb|1T72|D Chain D, Crystal Structure Of Phosphate Transport System Protein
Phou From Aquifex Aeolicus
pdb|1T72|E Chain E, Crystal Structure Of Phosphate Transport System Protein
Phou From Aquifex Aeolicus
pdb|1T72|F Chain F, Crystal Structure Of Phosphate Transport System Protein
Phou From Aquifex Aeolicus
pdb|1T72|G Chain G, Crystal Structure Of Phosphate Transport System Protein
Phou From Aquifex Aeolicus
Length = 227
Score = 25.4 bits (54), Expect = 7.7, Method: Compositional matrix adjust.
Identities = 14/32 (43%), Positives = 21/32 (65%), Gaps = 4/32 (12%)
Query: 4 RKAVIKNADMSEEMQQDAVDCATQALEKYNIE 35
++ VIK A + Q+A+D AT+AL K N+E
Sbjct: 17 KEQVIKXAKLV----QEAIDKATEALNKQNVE 44
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.322 0.135 0.404
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 2,560,207
Number of Sequences: 62578
Number of extensions: 92097
Number of successful extensions: 237
Number of sequences better than 100.0: 25
Number of HSP's better than 100.0 without gapping: 24
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 212
Number of HSP's gapped (non-prelim): 25
length of query: 89
length of database: 14,973,337
effective HSP length: 56
effective length of query: 33
effective length of database: 11,468,969
effective search space: 378475977
effective search space used: 378475977
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 45 (21.9 bits)