Query psy1421
Match_columns 89
No_of_seqs 119 out of 542
Neff 7.3
Searched_HMMs 29240
Date Fri Aug 16 22:15:40 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy1421.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/1421hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3rjs_A Dynein light chain moto 100.0 1.2E-46 4.1E-51 230.0 9.4 89 1-89 1-89 (89)
2 4ds1_A Dynein light chain 1, c 100.0 9.5E-45 3.3E-49 224.6 10.2 86 4-89 12-97 (97)
3 1yo3_A Dynein light chain 1; s 100.0 1.3E-43 4.4E-48 221.2 10.9 87 3-89 16-102 (102)
4 1eci_A Ectatomin; pore-forming 70.1 7.9 0.00027 18.8 4.9 33 14-48 4-36 (37)
5 1use_A VAsp, vasodilator-stimu 64.7 11 0.00036 19.5 3.4 34 15-50 10-43 (45)
6 3e9v_A Protein BTG2; B-cell tr 61.4 9.7 0.00033 23.5 3.5 44 12-55 1-48 (120)
7 3gzx_A Biphenyl dioxygenase su 58.9 27 0.00093 25.9 6.2 44 40-88 44-88 (457)
8 3frr_A Uncharacterized protein 55.3 9.2 0.00032 25.4 2.8 42 11-53 92-133 (191)
9 1eci_B Ectatomin; pore-forming 54.6 3.6 0.00012 19.7 0.5 14 35-48 21-34 (34)
10 2bmo_A Oxygenase-alpha NBDO; n 49.3 49 0.0017 24.0 6.2 42 42-88 25-67 (447)
11 2gbw_A Biphenyl 2,3-dioxygenas 49.1 49 0.0017 24.1 6.2 42 42-88 26-68 (454)
12 3vca_A Ring-hydroxylating diox 46.9 56 0.0019 23.8 6.1 44 40-88 30-74 (412)
13 2b1x_A Naphthalene dioxygenase 46.6 57 0.0019 23.9 6.2 42 42-88 34-76 (470)
14 1uli_A Biphenyl dioxygenase la 46.1 58 0.002 23.8 6.2 43 41-88 43-86 (460)
15 3n0q_A Putative aromatic-ring 44.9 64 0.0022 23.4 6.2 44 40-88 28-72 (409)
16 3idw_A Actin cytoskeleton-regu 44.5 5.4 0.00018 22.7 0.3 18 35-53 51-68 (72)
17 3id6_A NOP5, PRE mRNA splicing 43.8 32 0.0011 24.0 4.2 40 10-49 222-261 (268)
18 2z15_A Protein TOB1; human TOB 41.7 13 0.00046 23.1 1.8 44 12-55 7-52 (130)
19 1u84_A Hypothetical protein; s 38.2 29 0.00099 20.3 2.8 28 25-52 37-64 (90)
20 3gxq_A Putative regulator of t 38.0 43 0.0015 17.2 4.5 38 9-48 14-52 (54)
21 1qwg_A PSL synthase;, (2R)-pho 37.1 98 0.0033 21.3 5.8 48 10-60 108-169 (251)
22 1wyo_A Protein EB3, microtubul 36.3 35 0.0012 22.0 3.2 42 10-52 71-128 (159)
23 3ggy_A Increased sodium tolera 33.5 19 0.00066 23.9 1.7 41 11-53 99-139 (193)
24 2jt1_A PEFI protein; solution 33.1 53 0.0018 18.3 3.3 29 13-41 1-33 (77)
25 2b61_A Homoserine O-acetyltran 32.7 21 0.00071 23.8 1.8 33 35-67 136-168 (377)
26 3icx_A PRE mRNA splicing prote 32.1 62 0.0021 22.3 4.1 39 10-48 89-127 (255)
27 2xzr_A Immunoglobulin-binding 32.0 51 0.0018 19.8 3.2 28 16-44 77-104 (114)
28 3i1i_A Homoserine O-acetyltran 31.6 15 0.00051 24.3 0.9 32 36-67 130-161 (377)
29 2xyk_A 2-ON-2 hemoglobin; oxyg 30.9 85 0.0029 18.9 4.3 36 12-47 84-119 (133)
30 2zet_C Melanophilin; complex, 30.6 67 0.0023 20.3 3.8 38 11-48 15-52 (153)
31 1dlw_A Hemoglobin; oxygen stor 30.0 83 0.0028 18.1 4.9 37 12-48 72-108 (116)
32 2ozb_B U4/U6 small nuclear rib 29.5 73 0.0025 22.0 4.1 39 10-48 103-141 (260)
33 3k6g_A Telomeric repeat-bindin 27.8 25 0.00084 21.4 1.3 21 14-34 6-26 (111)
34 1wj7_A Hypothetical protein (R 27.6 14 0.0005 22.3 0.2 35 24-60 56-91 (104)
35 2qjz_A Microtubule-associated 27.2 40 0.0014 20.7 2.3 42 10-52 54-111 (123)
36 3byp_A CZRB protein; membrane 25.9 54 0.0019 18.1 2.6 22 37-59 61-82 (94)
37 3vba_A Isopropylmalate/citrama 24.6 29 0.001 22.7 1.3 17 49-65 50-66 (176)
38 1zoq_C CREB-binding protein, i 24.1 82 0.0028 16.1 3.9 28 14-47 15-42 (47)
39 3kyz_A Sensor protein PFES; AP 23.8 1.3E+02 0.0046 18.4 5.4 54 6-61 8-63 (125)
40 2hcu_A 3-isopropylmalate dehyd 23.4 36 0.0012 22.9 1.6 17 49-65 82-98 (213)
41 2bkm_A Truncated hemoglobin fr 23.2 1.2E+02 0.0041 17.8 3.9 36 12-47 79-114 (128)
42 2dst_A Hypothetical protein TT 23.0 60 0.002 18.4 2.4 31 36-67 64-94 (131)
43 2l48_A N-acetylmuramoyl-L-alan 22.9 30 0.001 20.1 1.0 15 35-51 65-79 (85)
44 2pkp_A Homoaconitase small sub 22.5 33 0.0011 22.2 1.3 17 49-65 48-64 (170)
45 2bmm_A Thermostable hemoglobin 22.4 1.2E+02 0.0042 17.5 4.4 36 12-47 77-112 (123)
46 4fz4_A 0197-18KD, uncharacteri 22.3 1.6E+02 0.0053 18.9 4.4 29 24-52 88-116 (154)
47 2hjq_A Hypothetical protein YQ 22.1 96 0.0033 18.7 3.1 39 11-49 63-101 (111)
48 2kl8_A OR15; structural genomi 21.8 1.1E+02 0.0039 16.9 4.3 29 4-32 40-68 (85)
49 3zzp_A TS9, ribosomal protein 21.2 1.2E+02 0.004 16.8 3.7 26 6-31 49-74 (77)
50 3vp5_A Transcriptional regulat 20.9 1.5E+02 0.005 17.8 4.5 31 11-41 7-41 (189)
51 2pl5_A Homoserine O-acetyltran 20.9 45 0.0016 21.9 1.7 33 35-67 127-159 (366)
52 1zbd_B Rabphilin-3A; G protein 20.8 72 0.0024 19.7 2.5 39 10-48 7-45 (134)
53 2k42_B Espfu; WAsp, GBD, autoi 20.5 51 0.0017 16.0 1.4 12 37-48 6-17 (36)
54 1rm1_A Tata-box binding protei 20.5 78 0.0027 21.6 2.9 38 52-89 65-119 (240)
55 3pla_A NOP5, PRE mRNA splicing 20.4 1.3E+02 0.0044 22.1 4.1 38 10-47 222-259 (388)
56 1ux8_A YJBI protein; oxygen st 20.1 1.4E+02 0.0046 17.7 3.7 36 12-47 80-115 (132)
No 1
>3rjs_A Dynein light chain motor protein; parasite, LC8, DLC8, TGDLC8, LIG PIN, DLC1, dynll1, transport protein; 1.50A {Toxoplasma gondii} PDB: 1pwj_A 2xqq_A 1re6_A 3p8m_A 3dvt_A 2pg1_A 1rhw_A 2p1k_A 2p2t_A 3bri_A 3e2b_A 3fm7_E 3glw_A 3brl_A 3dvh_A 3dvp_A 1pwk_A 1f3c_A 1f95_A 1f96_A ...
Probab=100.00 E-value=1.2e-46 Score=230.03 Aligned_cols=89 Identities=85% Similarity=1.397 Sum_probs=86.2
Q ss_pred CCCCccEEEeCCCCHHHHHHHHHHHHHHHhhcCchHHHHHHHHHHhcccCCCceEEEEeCCceeeEEEcCCcEEEEEeCC
Q psy1421 1 MSDRKAVIKNADMSEEMQQDAVDCATQALEKYNIEKDIAAYIKKEFDKKYNPTWHCIVGRNFGSYVTHETRHFIYFYLGQ 80 (89)
Q Consensus 1 m~~~~~~v~~~dM~~~mq~~i~~~~~~a~~~~~~~~~iA~~iK~~lD~~yG~~Wh~vVG~~fg~~~th~~~~~~~f~~~~ 80 (89)
|++.+++|+.+|||++||++|+++|.+|+++++.++++|++||++||++|||+||||||++|||++||++++|+||++|+
T Consensus 1 m~~~k~~i~~~dM~~emq~~a~~~a~~al~~~~~ek~iA~~IK~~fD~kyg~~WhciVG~~Fgs~vthe~~~fiyF~~g~ 80 (89)
T 3rjs_A 1 MADRKAVIKNADMPEDLQQDAIDCANQALEKYNIEKDIAAFIKKEFDRKHNPTWHCVVGRNFGSYVTHETHHFIYFYIGQ 80 (89)
T ss_dssp --CCCCEEEEEESCHHHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHCSCCEEEEESSCCCCCCEEEEEEEEEEETT
T ss_pred CCCCccEEEECCCCHHHHHHHHHHHHHHHHHCCcHHHHHHHHHHHHhcccCCCCEEEEecCeeEEEEEcCCcEEEEEECC
Confidence 88899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEEEeeC
Q psy1421 81 VAILLFKSG 89 (89)
Q Consensus 81 ~~~lv~kt~ 89 (89)
++|||||||
T Consensus 81 ~~iLlfKtg 89 (89)
T 3rjs_A 81 VAVLLFKSG 89 (89)
T ss_dssp EEEEEEEEC
T ss_pred EEEEEEecC
Confidence 999999998
No 2
>4ds1_A Dynein light chain 1, cytoplasmic; dynein light chain fold, peptide binding, nucle structural protein-transport protein complex; 1.85A {Saccharomyces cerevisiae}
Probab=100.00 E-value=9.5e-45 Score=224.65 Aligned_cols=86 Identities=48% Similarity=0.986 Sum_probs=84.9
Q ss_pred CccEEEeCCCCHHHHHHHHHHHHHHHhhcCchHHHHHHHHHHhcccCCCceEEEEeCCceeeEEEcCCcEEEEEeCCEEE
Q psy1421 4 RKAVIKNADMSEEMQQDAVDCATQALEKYNIEKDIAAYIKKEFDKKYNPTWHCIVGRNFGSYVTHETRHFIYFYLGQVAI 83 (89)
Q Consensus 4 ~~~~v~~~dM~~~mq~~i~~~~~~a~~~~~~~~~iA~~iK~~lD~~yG~~Wh~vVG~~fg~~~th~~~~~~~f~~~~~~~ 83 (89)
.+++|+.+|||++||++|+++|.+|++++++++++|++||++||++|||+||||||++|||++||++++|+||++|+++|
T Consensus 12 ~k~~I~~~DM~~emq~~a~~~a~~al~~~~~ek~iA~~IK~~fDkkyG~~WhcIVG~~Fgs~vThe~~~fiyF~~g~~ai 91 (97)
T 4ds1_A 12 STPIVKASDITDKLKEDILTISKDALDKYQLERDIAGTVKKQLDVKYGNTWHVIVGKNFGSYVTHEKGHFVYFYIGPLAF 91 (97)
T ss_dssp CCCEEEEEEECHHHHHHHHHHHHHHHHHCSSHHHHHHHHHHHHHHHHCSCEEEEEEEEEEEEEEECTTEEEEEEETTEEE
T ss_pred CccEEEECCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCccCCCCEEEEccCccEEEEEcCCcEEEEEECCEEE
Confidence 78999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEeeC
Q psy1421 84 LLFKSG 89 (89)
Q Consensus 84 lv~kt~ 89 (89)
||||||
T Consensus 92 LlfKtg 97 (97)
T 4ds1_A 92 LVFKTA 97 (97)
T ss_dssp EEEECC
T ss_pred EEEecC
Confidence 999997
No 3
>1yo3_A Dynein light chain 1; structural genomics consortium, microtub malaria, SGC, transport protein; 1.65A {Plasmodium falciparum} PDB: 1f3c_A 1f95_A 1f96_A 1rhw_A 2p1k_A 2p2t_A 3bri_A 3e2b_A 3fm7_E 3glw_A 3dvt_A 2pg1_A 3p8m_A 1pwj_A 2xqq_A 3brl_A 1re6_A 1cmi_A 3dvh_A 3dvp_A ...
Probab=100.00 E-value=1.3e-43 Score=221.24 Aligned_cols=87 Identities=79% Similarity=1.337 Sum_probs=84.0
Q ss_pred CCccEEEeCCCCHHHHHHHHHHHHHHHhhcCchHHHHHHHHHHhcccCCCceEEEEeCCceeeEEEcCCcEEEEEeCCEE
Q psy1421 3 DRKAVIKNADMSEEMQQDAVDCATQALEKYNIEKDIAAYIKKEFDKKYNPTWHCIVGRNFGSYVTHETRHFIYFYLGQVA 82 (89)
Q Consensus 3 ~~~~~v~~~dM~~~mq~~i~~~~~~a~~~~~~~~~iA~~iK~~lD~~yG~~Wh~vVG~~fg~~~th~~~~~~~f~~~~~~ 82 (89)
..+++|+.+|||++||++|+++|.+|++++++++++|++||++||++|||+||||||++|||++||++++|+||++|+++
T Consensus 16 ~~~~~I~~~DM~~emq~~a~~~a~~Al~k~~~ekdiA~~IK~~fDkkyG~~WHcIVG~~FGs~vThe~~~fiyF~~g~~a 95 (102)
T 1yo3_A 16 PRGSVVKNVDMTEEMQIDAIDCANQALQKYNVEKDIAAHIKKEFDRKYDPTWHCVVGRNFGSYVTHETKNFIYFYIGQVA 95 (102)
T ss_dssp --CCCEEETTSCHHHHHHHHHHHHHHHHHCSSHHHHHHHHHHHHHHHHCSCEEEEESSSCCCEEESCCCEEEEEEETTEE
T ss_pred CCCCEEEECCCCHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHhhhcCCCCEEEEccCeeEEEEEeCCcEEEEEECCEE
Confidence 36799999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEeeC
Q psy1421 83 ILLFKSG 89 (89)
Q Consensus 83 ~lv~kt~ 89 (89)
|||||||
T Consensus 96 iLlfKt~ 102 (102)
T 1yo3_A 96 ILLFKSG 102 (102)
T ss_dssp EEEEECC
T ss_pred EEEEecC
Confidence 9999997
No 4
>1eci_A Ectatomin; pore-forming toxins, ANT venoms; NMR {Ectatomma tuberculatum} SCOP: a.33.1.1
Probab=70.06 E-value=7.9 Score=18.75 Aligned_cols=33 Identities=27% Similarity=0.379 Sum_probs=20.8
Q ss_pred CHHHHHHHHHHHHHHHhhcCchHHHHHHHHHHhcc
Q psy1421 14 SEEMQQDAVDCATQALEKYNIEKDIAAYIKKEFDK 48 (89)
Q Consensus 14 ~~~mq~~i~~~~~~a~~~~~~~~~iA~~iK~~lD~ 48 (89)
|...-+.|.-....-.+++. .++|.+||+..|+
T Consensus 4 pkkiweticpt~~~~akkc~--g~iat~ik~~c~k 36 (37)
T 1eci_A 4 PKKIWETVCPTVEPWAKKCS--GDIATYIKRECGK 36 (37)
T ss_dssp CHHHHHHHHHHHHHHHHTBC--HHHHHHHHHHHHC
T ss_pred hHHHHHHhCcchHHHHHHcc--chHHHHHHHHhcc
Confidence 44444445444444444444 7899999999886
No 5
>1use_A VAsp, vasodilator-stimulated phosphoprotein; signaling protein, null; 1.3A {Homo sapiens} SCOP: h.1.29.1 PDB: 1usd_A
Probab=64.74 E-value=11 Score=19.50 Aligned_cols=34 Identities=18% Similarity=0.336 Sum_probs=25.2
Q ss_pred HHHHHHHHHHHHHHHhhcCchHHHHHHHHHHhcccC
Q psy1421 15 EEMQQDAVDCATQALEKYNIEKDIAAYIKKEFDKKY 50 (89)
Q Consensus 15 ~~mq~~i~~~~~~a~~~~~~~~~iA~~iK~~lD~~y 50 (89)
+.++++|++..+.-+++-+ +||-..|++.|.++.
T Consensus 10 e~~KqEIL~E~RkElqK~K--~EIIeAi~~El~~~~ 43 (45)
T 1use_A 10 QRVKQELLEEVKKELQKVK--EEIIEAFVQELRKRG 43 (45)
T ss_dssp HHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHC-
T ss_pred HHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHhcC
Confidence 3477888888887777655 568888899888763
No 6
>3e9v_A Protein BTG2; B-cell translocation gene 2, structural genomics, PSI- 2, protein structure initiative; 1.70A {Homo sapiens} SCOP: d.370.1.1 PDB: 3dju_B 3djn_B
Probab=61.42 E-value=9.7 Score=23.50 Aligned_cols=44 Identities=14% Similarity=0.217 Sum_probs=28.2
Q ss_pred CCCHHHHHHHHHHHHHHHhh--cCc--hHHHHHHHHHHhcccCCCceE
Q psy1421 12 DMSEEMQQDAVDCATQALEK--YNI--EKDIAAYIKKEFDKKYNPTWH 55 (89)
Q Consensus 12 dM~~~mq~~i~~~~~~a~~~--~~~--~~~iA~~iK~~lD~~yG~~Wh 55 (89)
||-.|.+..|-=++.-...+ .+. -...++.|.+.|-++|-+.|+
T Consensus 1 ~M~~EI~~av~Fl~~~l~~~~~l~~~~v~~F~~~L~~~L~~~y~~HW~ 48 (120)
T 3e9v_A 1 DMLPEIAAAVGFLSSLLRTRGCVSEQRLKVFSGALQEALTEHYKHHWF 48 (120)
T ss_dssp CCHHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHHTTSCC
T ss_pred ChHHHHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHHHHhcCCC
Confidence 45556555554444444434 222 234688899999999999998
No 7
>3gzx_A Biphenyl dioxygenase subunit alpha; rieskie, non-heme iron, 2Fe-2S, aromatic hydroc catabolism, iron, iron-sulfur, metal-binding, NAD; HET: BNL MES; 1.58A {Comamonas testosteroni} PDB: 3gzy_A* 1wql_A 2xso_A 2xsh_A 2xrx_A* 2xr8_A* 2yfi_A 2yfj_A* 2yfl_A*
Probab=58.86 E-value=27 Score=25.86 Aligned_cols=44 Identities=9% Similarity=0.426 Sum_probs=33.2
Q ss_pred HHHHHHhcccCCCceEEEEeC-CceeeEEEcCCcEEEEEeCCEEEEEEee
Q psy1421 40 AYIKKEFDKKYNPTWHCIVGR-NFGSYVTHETRHFIYFYLGQVAILLFKS 88 (89)
Q Consensus 40 ~~iK~~lD~~yG~~Wh~vVG~-~fg~~~th~~~~~~~f~~~~~~~lv~kt 88 (89)
+....++++-|++.|++|.-. ... +++.++-+.+++..++|||.
T Consensus 44 ~~~~~E~~~if~~~W~~v~~~~elp-----~~G~~~~~~i~~~~vvv~R~ 88 (457)
T 3gzx_A 44 DLYQLELERVFGRSWLMLGHETHIP-----KIGDYLTTYMGEDPVIMVRQ 88 (457)
T ss_dssp HHHHHHHHHTTTTSCEEEEEGGGSC-----STTEEEEEEETTEEEEEEEC
T ss_pred HHHHHHHHHHHhcCCEEEeEHHHcC-----CCCCeEEEEECCEEEEEEEC
Confidence 334578889999999988655 233 45677778889999999984
No 8
>3frr_A Uncharacterized protein KIAA0174; ESCRT, ESCRT-III, CHMP, IST1, alternative splicing, phosphoprotein, protein binding; 1.80A {Homo sapiens} PDB: 3frs_A
Probab=55.31 E-value=9.2 Score=25.40 Aligned_cols=42 Identities=7% Similarity=0.116 Sum_probs=32.0
Q ss_pred CCCCHHHHHHHHHHHHHHHhhcCchHHHHHHHHHHhcccCCCc
Q psy1421 11 ADMSEEMQQDAVDCATQALEKYNIEKDIAAYIKKEFDKKYNPT 53 (89)
Q Consensus 11 ~dM~~~mq~~i~~~~~~a~~~~~~~~~iA~~iK~~lD~~yG~~ 53 (89)
.+.|+++++.|..++-.|-.-.++.+|+.. |++.|-.+||+.
T Consensus 92 k~cp~~l~EAvsslIyAa~R~~~elpEL~~-ir~~l~~KyGke 133 (191)
T 3frr_A 92 KELDSGLAESVSTLIWAAPRLQSEVAELKI-VADQLCAKYSKE 133 (191)
T ss_dssp SSCCGGGHHHHHHHHHHHHHHTTTCHHHHH-HHHHHHHHHCHH
T ss_pred CCCCHHHHHHHHHHHHhhhcccccChHHHH-HHHHHHHHhCHH
Confidence 578899988887777766443366677776 899999999964
No 9
>1eci_B Ectatomin; pore-forming toxins, ANT venoms; NMR {Ectatomma tuberculatum} SCOP: a.33.1.1
Probab=54.59 E-value=3.6 Score=19.67 Aligned_cols=14 Identities=57% Similarity=0.679 Sum_probs=11.5
Q ss_pred hHHHHHHHHHHhcc
Q psy1421 35 EKDIAAYIKKEFDK 48 (89)
Q Consensus 35 ~~~iA~~iK~~lD~ 48 (89)
+.++|.+||+..|+
T Consensus 21 ~g~iat~ik~~c~k 34 (34)
T 1eci_B 21 EGSIATMIKKKCDK 34 (34)
T ss_dssp STTHHHHHHHHSCC
T ss_pred cccHHHHHHHHhCC
Confidence 35799999998875
No 10
>2bmo_A Oxygenase-alpha NBDO; nitrobenzene dioxygenase, nitroarene, rieske non-heme dioxygenase, substrate specificity iron- sulfur, metal-binding, NAD; 1.2A {Comamonas SP} SCOP: b.33.1.2 d.129.3.3 PDB: 2bmq_A 2bmr_A* 2hmj_A 2hml_A* 2hmn_A* 1o7n_A 1ndo_A 1o7g_A* 1o7h_A 1o7m_A 1eg9_A 1o7p_A* 1o7w_A 1uuv_A 1uuw_A 2hmk_A* 2hmm_A* 2hmo_A*
Probab=49.33 E-value=49 Score=24.00 Aligned_cols=42 Identities=7% Similarity=0.309 Sum_probs=31.3
Q ss_pred HHHHhcccCCCceEEEEeCC-ceeeEEEcCCcEEEEEeCCEEEEEEee
Q psy1421 42 IKKEFDKKYNPTWHCIVGRN-FGSYVTHETRHFIYFYLGQVAILLFKS 88 (89)
Q Consensus 42 iK~~lD~~yG~~Wh~vVG~~-fg~~~th~~~~~~~f~~~~~~~lv~kt 88 (89)
...++++-|...|++|.-.+ .. +++.++-+.+++..++|||.
T Consensus 25 ~~~E~~~if~~~W~~v~~~~el~-----~~g~~~~~~~~~~~vvv~R~ 67 (447)
T 2bmo_A 25 FQHELKTIFARNWLFLTHDSLIP-----SPGDYVKAKMGVDEVIVSRQ 67 (447)
T ss_dssp HHHHHHHTTTTSCEEEEEGGGSC-----STTEEEEEEETTEEEEEEEC
T ss_pred HHHHHHHhhccCCeEEeEHHHCC-----CCCCeEEEEECCeeEEEEEC
Confidence 35677888999999975432 32 35778888899999999984
No 11
>2gbw_A Biphenyl 2,3-dioxygenase alpha subunit; rieske oxygenase, oxidoreductase, non heme iron; 1.70A {Sphingobium yanoikuyae} PDB: 2gbx_A* 2ckf_A
Probab=49.11 E-value=49 Score=24.07 Aligned_cols=42 Identities=14% Similarity=0.325 Sum_probs=31.0
Q ss_pred HHHHhcccCCCceEEEEeC-CceeeEEEcCCcEEEEEeCCEEEEEEee
Q psy1421 42 IKKEFDKKYNPTWHCIVGR-NFGSYVTHETRHFIYFYLGQVAILLFKS 88 (89)
Q Consensus 42 iK~~lD~~yG~~Wh~vVG~-~fg~~~th~~~~~~~f~~~~~~~lv~kt 88 (89)
...++++-|...|++|.-. ... +++.++-+.+++..++|||.
T Consensus 26 ~~~E~~~if~~~W~~v~~~~el~-----~~g~~~~~~~~~~~vvv~R~ 68 (454)
T 2gbw_A 26 YALEIERIFSRAWLMLGHESLVP-----KPGDFITTYMAEDKVILSHQ 68 (454)
T ss_dssp HHHHHHHTTTTSCEEEEEGGGSC-----STTEEEEEEETTEEEEEEEC
T ss_pred HHHHHHHHhhcCcEEEeEHHHCC-----CCCCeEEEEECCeEEEEEEc
Confidence 3567788899999997543 232 35677778889999999984
No 12
>3vca_A Ring-hydroxylating dioxygenase; rieske-type, mononuclear non-heme iron, N-demethylase, oxido; 1.59A {Sinorhizobium meliloti} PDB: 3vcp_A
Probab=46.86 E-value=56 Score=23.76 Aligned_cols=44 Identities=9% Similarity=0.305 Sum_probs=33.8
Q ss_pred HHHHHHhcccCCCceEEEEeC-CceeeEEEcCCcEEEEEeCCEEEEEEee
Q psy1421 40 AYIKKEFDKKYNPTWHCIVGR-NFGSYVTHETRHFIYFYLGQVAILLFKS 88 (89)
Q Consensus 40 ~~iK~~lD~~yG~~Wh~vVG~-~fg~~~th~~~~~~~f~~~~~~~lv~kt 88 (89)
+....++++-|...|++|.-. ... ++|.++-+.+++..++|||.
T Consensus 30 ~~~~~E~~~if~~~W~~v~~~~elp-----~~G~~~~~~i~g~~vvv~R~ 74 (412)
T 3vca_A 30 EVYALDLQHIFYKQWLYAVPVCQLA-----KAGSYTTLRVGAYEVVIVRS 74 (412)
T ss_dssp HHHHHHHHHTTTTSCEEEEEGGGGC-----STTEEEEEEETTEEEEEEEC
T ss_pred HHHHHHHHHHHhccCEEEEEHHHCC-----CCCCeEEEEECCEEEEEEEc
Confidence 344678888999999997655 232 45778888899999999985
No 13
>2b1x_A Naphthalene dioxygenase large subunit; rieske non-heme iron oxygenase, oxidoreductase; 2.00A {Rhodococcus SP} SCOP: b.33.1.2 d.129.3.3 PDB: 2b24_A
Probab=46.58 E-value=57 Score=23.90 Aligned_cols=42 Identities=10% Similarity=0.344 Sum_probs=30.6
Q ss_pred HHHHhcccCCCceEEEEeC-CceeeEEEcCCcEEEEEeCCEEEEEEee
Q psy1421 42 IKKEFDKKYNPTWHCIVGR-NFGSYVTHETRHFIYFYLGQVAILLFKS 88 (89)
Q Consensus 42 iK~~lD~~yG~~Wh~vVG~-~fg~~~th~~~~~~~f~~~~~~~lv~kt 88 (89)
...++++-|...|++|.-. ... +++.++-+.+++..++|||.
T Consensus 34 ~~~E~~~if~~~W~~v~~~~el~-----~~g~~~~~~~~g~~vvv~R~ 76 (470)
T 2b1x_A 34 HDVERERIFGHAWVFLAHESEIP-----ERGDYVVRYISEDQFIVCRD 76 (470)
T ss_dssp HHHHHHHTTTTSCEEEEEGGGSC-----STTEEEEEEETTEEEEEEEC
T ss_pred HHHHHHHHhhcCCeEeeeHHHCC-----CCCCeEEEEECCeEEEEEEc
Confidence 3466777899999997544 232 34677778889999999984
No 14
>1uli_A Biphenyl dioxygenase large subunit; alpha3 BETA3 hetero hexamer, oxidoreductase; 2.20A {Rhodococcus SP} SCOP: b.33.1.2 d.129.3.3 PDB: 1ulj_A* 3en1_A* 3eqq_A
Probab=46.09 E-value=58 Score=23.79 Aligned_cols=43 Identities=12% Similarity=0.457 Sum_probs=31.2
Q ss_pred HHHHHhcccCCCceEEEEeC-CceeeEEEcCCcEEEEEeCCEEEEEEee
Q psy1421 41 YIKKEFDKKYNPTWHCIVGR-NFGSYVTHETRHFIYFYLGQVAILLFKS 88 (89)
Q Consensus 41 ~iK~~lD~~yG~~Wh~vVG~-~fg~~~th~~~~~~~f~~~~~~~lv~kt 88 (89)
....++++-|...|++|--. ... +++.++-+.+++..++|||.
T Consensus 43 ~~~~E~~~if~~~W~~v~~~~el~-----~~g~~~~~~i~~~~vvv~R~ 86 (460)
T 1uli_A 43 LYEQELERIFGRSWLLMGHETQIP-----KAGDFMTNYMGEDPVMVVRQ 86 (460)
T ss_dssp HHHHHHHHTTTTSCEEEEEGGGSC-----STTEEEEEEETTEEEEEEEC
T ss_pred HHHHHHHHhhhcCceEEEEHHHCC-----CCCCeEEEEECCeEEEEEEc
Confidence 34577788899999997543 232 34667778889988999884
No 15
>3n0q_A Putative aromatic-ring hydroxylating dioxygenase; rieske [2Fe-2S] domain, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.80A {Ruegeria SP}
Probab=44.89 E-value=64 Score=23.43 Aligned_cols=44 Identities=5% Similarity=0.365 Sum_probs=33.8
Q ss_pred HHHHHHhcccCCCceEEEEeC-CceeeEEEcCCcEEEEEeCCEEEEEEee
Q psy1421 40 AYIKKEFDKKYNPTWHCIVGR-NFGSYVTHETRHFIYFYLGQVAILLFKS 88 (89)
Q Consensus 40 ~~iK~~lD~~yG~~Wh~vVG~-~fg~~~th~~~~~~~f~~~~~~~lv~kt 88 (89)
+....++++-|...|++|.-. ... ++|.++-+.+++..++|||.
T Consensus 28 ~~~~~E~~~if~~~W~~v~~~~elp-----~~G~~~~~~i~g~~vvv~R~ 72 (409)
T 3n0q_A 28 EVFQTDLQEIFYKEWLFAIPACELD-----KPGSYVTHQVGNYNVIIVRG 72 (409)
T ss_dssp HHHHHHHHHTTTTSCEEEEEGGGSC-----STTEEEEEEETTEEEEEEEC
T ss_pred HHHHHHHHHHHhcCCEEEEEHHHCC-----CCCCeEEEEECCEEEEEEEc
Confidence 344677888999999998755 243 45778888999999999984
No 16
>3idw_A Actin cytoskeleton-regulatory complex protein SLA; clathrin adaptor, endocytosis, SAM domain, yeast, actin-BIND membrane, endosome; 1.85A {Saccharomyces cerevisiae}
Probab=44.50 E-value=5.4 Score=22.67 Aligned_cols=18 Identities=39% Similarity=0.623 Sum_probs=13.3
Q ss_pred hHHHHHHHHHHhcccCCCc
Q psy1421 35 EKDIAAYIKKEFDKKYNPT 53 (89)
Q Consensus 35 ~~~iA~~iK~~lD~~yG~~ 53 (89)
+.|+-+ |.+++|++||+.
T Consensus 51 eGDIIr-Vmk~l~~k~~r~ 68 (72)
T 3idw_A 51 EGDIVR-VMKHLDKKFGRE 68 (72)
T ss_dssp HHHHHH-HHHHHHHHTTC-
T ss_pred hhhHHH-HHHHHHHHhCcC
Confidence 566766 778899999874
No 17
>3id6_A NOP5, PRE mRNA splicing protein; C/D guide RNA, 2'-O-methylation, coiled-coil, methyltransfer binding, rRNA processing; HET: SAM; 2.60A {Sulfolobus solfataricus}
Probab=43.83 E-value=32 Score=23.96 Aligned_cols=40 Identities=25% Similarity=0.395 Sum_probs=30.1
Q ss_pred eCCCCHHHHHHHHHHHHHHHhhcCchHHHHHHHHHHhccc
Q psy1421 10 NADMSEEMQQDAVDCATQALEKYNIEKDIAAYIKKEFDKK 49 (89)
Q Consensus 10 ~~dM~~~mq~~i~~~~~~a~~~~~~~~~iA~~iK~~lD~~ 49 (89)
.+||+++.-..|.+.|...++.+..-+++.++|+..|.+-
T Consensus 222 G~~ise~DL~~I~~~a~~v~~L~e~R~~L~~Yl~srM~~~ 261 (268)
T 3id6_A 222 GADISEDDLSAMRMIANTILDLYNIRRNLNNYLEGVMKEV 261 (268)
T ss_dssp CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC--
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4688888888888888888776655577888998888763
No 18
>2z15_A Protein TOB1; human TOB1 protein, phosphorylation, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.30A {Homo sapiens} SCOP: d.370.1.1 PDB: 2d5r_B
Probab=41.73 E-value=13 Score=23.14 Aligned_cols=44 Identities=18% Similarity=0.183 Sum_probs=25.9
Q ss_pred CCCHHHHHHHHHHHHHHHhhcCc--hHHHHHHHHHHhcccCCCceE
Q psy1421 12 DMSEEMQQDAVDCATQALEKYNI--EKDIAAYIKKEFDKKYNPTWH 55 (89)
Q Consensus 12 dM~~~mq~~i~~~~~~a~~~~~~--~~~iA~~iK~~lD~~yG~~Wh 55 (89)
.|-.|.+..|-=+++-...+.+. .+..++.|.+.|-++|-+.|+
T Consensus 7 ~M~~EI~~av~Fl~~~L~~klp~~~v~~F~~~L~~~L~~~y~~HWy 52 (130)
T 2z15_A 7 GMQLEIQVALNFIISYLYNKLPRRRVNIFGEELERLLKKKYEGHWY 52 (130)
T ss_dssp CSHHHHHHHHHHHHTTTTTTSCHHHHHHHHHHHHHHHHHHHTTCCC
T ss_pred hHHHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHhcCCCC
Confidence 44444444433333333233332 235788899999999999993
No 19
>1u84_A Hypothetical protein; structural genomics, protein structure initiative, MCSG, PSI center for structural genomics; 1.60A {Geobacillus stearothermophilus} SCOP: a.230.1.1 PDB: 3r2x_C*
Probab=38.24 E-value=29 Score=20.32 Aligned_cols=28 Identities=18% Similarity=0.260 Sum_probs=20.6
Q ss_pred HHHHHhhcCchHHHHHHHHHHhcccCCC
Q psy1421 25 ATQALEKYNIEKDIAAYIKKEFDKKYNP 52 (89)
Q Consensus 25 ~~~a~~~~~~~~~iA~~iK~~lD~~yG~ 52 (89)
+..|+...++...+|+.|..-+...||.
T Consensus 37 Iv~av~~~d~~~~LA~~Iq~If~~SFee 64 (90)
T 1u84_A 37 VLQAVYETEDARTLAARIQSIYEFAFDE 64 (90)
T ss_dssp HHHHHTTCSCHHHHHHHHHHHHHHHHSS
T ss_pred HHHHHHhCCCHHHHHHHHHHHHHHHHhc
Confidence 3446666677788999998888877754
No 20
>3gxq_A Putative regulator of transfer genes ARTA; ribbon-helix-helix, plasmid, DNA binding protein/DNA complex; HET: DNA; 2.35A {Staphylococcus aureus subsp}
Probab=38.01 E-value=43 Score=17.22 Aligned_cols=38 Identities=11% Similarity=0.271 Sum_probs=23.5
Q ss_pred EeCCCCHHHHHHHHHHHHHHHhhcCchHHHHH-HHHHHhcc
Q psy1421 9 KNADMSEEMQQDAVDCATQALEKYNIEKDIAA-YIKKEFDK 48 (89)
Q Consensus 9 ~~~dM~~~mq~~i~~~~~~a~~~~~~~~~iA~-~iK~~lD~ 48 (89)
.+--.+++|+.+|+..+.+. .+++-....+ .+|+-|++
T Consensus 14 lhllvdpdmkdeiikyaqek--dfdnvsqagreilkkgleq 52 (54)
T 3gxq_A 14 LHLLVDPDMKDEIIKYAQEK--DFDNVSQAGREILKKGLEQ 52 (54)
T ss_dssp EEEEECHHHHHHHHHHHHHH--STTCHHHHHHHHHHHHHHT
T ss_pred EEEeeCCchhHHHHHHHHHc--cchhHHHHHHHHHHHHHHh
Confidence 44456789999998887753 4555444433 34666653
No 21
>1qwg_A PSL synthase;, (2R)-phospho-3-sulfolactate synthase; beta-alpha-barrel, lyase; 1.60A {Methanocaldococcus jannaschii} SCOP: c.1.27.1
Probab=37.15 E-value=98 Score=21.34 Aligned_cols=48 Identities=19% Similarity=0.157 Sum_probs=34.6
Q ss_pred eCCCCHHHHHHHHHHHHHH-Hhh-------c------CchHHHHHHHHHHhcccCCCceEEEEeC
Q psy1421 10 NADMSEEMQQDAVDCATQA-LEK-------Y------NIEKDIAAYIKKEFDKKYNPTWHCIVGR 60 (89)
Q Consensus 10 ~~dM~~~mq~~i~~~~~~a-~~~-------~------~~~~~iA~~iK~~lD~~yG~~Wh~vVG~ 60 (89)
..+||++.+...++.+.+. ++- . .+..+..+.+++.||. +.|.|+|=-
T Consensus 108 ~i~l~~~~~~~~I~~~~~~G~~v~~EvG~k~~~~~~~~~~~~~I~~~~~~LeA---GA~~ViiEa 169 (251)
T 1qwg_A 108 SSDISLEERNNAIKRAKDNGFMVLTEVGKKMPDKDKQLTIDDRIKLINFDLDA---GADYVIIEG 169 (251)
T ss_dssp SSCCCHHHHHHHHHHHHHTTCEEEEEECCSSHHHHTTCCHHHHHHHHHHHHHH---TCSEEEECC
T ss_pred cccCCHHHHHHHHHHHHHCCCEEeeeccccCCcccCCCCHHHHHHHHHHHHHC---CCcEEEEee
Confidence 3589999999999988776 321 1 1235688889999998 677777743
No 22
>1wyo_A Protein EB3, microtubule-associated protein RP/EB family member 3; CH domain, microtubule-binding, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=36.30 E-value=35 Score=21.98 Aligned_cols=42 Identities=21% Similarity=0.392 Sum_probs=30.8
Q ss_pred eCCCCHHHHHHHHHHHHHHHhhcCc----------------hHHHHHHHHHHhcccCCC
Q psy1421 10 NADMSEEMQQDAVDCATQALEKYNI----------------EKDIAAYIKKEFDKKYNP 52 (89)
Q Consensus 10 ~~dM~~~mq~~i~~~~~~a~~~~~~----------------~~~iA~~iK~~lD~~yG~ 52 (89)
.+.++-++.+++ .+..+|+++++. .-|.++.+|+.+|+.|++
T Consensus 71 ~a~~e~e~~~N~-k~lQ~af~k~gV~k~ipV~kLvkgk~qdNlEFlqWfk~f~d~n~~~ 128 (159)
T 1wyo_A 71 QAKLEHEYIHNF-KVLQAAFKKMGVDKIIPVEKLVKGKFQDNFEFIQWFKKFFDANYDG 128 (159)
T ss_dssp TCCSSHHHHHHH-HHHHHHHHHHTCCCCCCHHHHTTTCSHHHHHHHHHHHHHHHTTCCS
T ss_pred CCCChHHHHHHH-HHHHHHHHHcCCCCccCHHHHhcCCchhHHHHHHHHHHHHHHcCCC
Confidence 677777777776 455567776532 237999999999999975
No 23
>3ggy_A Increased sodium tolerance protein 1; ESCRT-III like, phosphoprotein, protein transport, endocytosis; 1.70A {Saccharomyces cerevisiae} PDB: 3ggz_A
Probab=33.45 E-value=19 Score=23.88 Aligned_cols=41 Identities=15% Similarity=0.140 Sum_probs=30.6
Q ss_pred CCCCHHHHHHHHHHHHHHHhhcCchHHHHHHHHHHhcccCCCc
Q psy1421 11 ADMSEEMQQDAVDCATQALEKYNIEKDIAAYIKKEFDKKYNPT 53 (89)
Q Consensus 11 ~dM~~~mq~~i~~~~~~a~~~~~~~~~iA~~iK~~lD~~yG~~ 53 (89)
.+.|+++++.|..++-.|- .+++.+|+.. |+..|-.+||+.
T Consensus 99 k~cp~~l~EAvsslIyAa~-R~~elpEL~~-ir~~l~~KyGke 139 (193)
T 3ggy_A 99 EHMDDGINEAIRSLIYAIL-FVDEVKELSQ-LKDLMAWKINVE 139 (193)
T ss_dssp HSSSSSHHHHHHHHHHHGG-GCTTCTTHHH-HHHHHHHHTCHH
T ss_pred cCCCHHHHHHHHHHHHhcc-cCCCChHHHH-HHHHHHHHhCHH
Confidence 4678888888877776553 4566667766 899999999964
No 24
>2jt1_A PEFI protein; solution structure, winged helix-turn-helix, transcripti regulatory protein, structural genomics, PSI-2; NMR {Salmonella typhimurium LT2}
Probab=33.10 E-value=53 Score=18.25 Aligned_cols=29 Identities=21% Similarity=0.216 Sum_probs=19.5
Q ss_pred CCHHHHHHHHHHHHHHHhh---cC-chHHHHHH
Q psy1421 13 MSEEMQQDAVDCATQALEK---YN-IEKDIAAY 41 (89)
Q Consensus 13 M~~~mq~~i~~~~~~a~~~---~~-~~~~iA~~ 41 (89)
|++.-+++|++.+.+.++. ++ +-.|+|+.
T Consensus 1 ~~~~r~~~IL~~I~~~i~~~~g~~psv~EIa~~ 33 (77)
T 2jt1_A 1 MSESIVTKIISIVQERQNMDDGAPVKTRDIADA 33 (77)
T ss_dssp CCCTHHHHHHHHHHHHHHHHTTSCEEHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHhhccCCCcCHHHHHHH
Confidence 6777888899988887665 22 24556553
No 25
>2b61_A Homoserine O-acetyltransferase; acyl-enzyme, aspartate pathway, coenzyme A, structure-functi studies, alpha-beta hydrolase fold; 1.65A {Haemophilus influenzae} SCOP: c.69.1.40
Probab=32.74 E-value=21 Score=23.83 Aligned_cols=33 Identities=21% Similarity=0.288 Sum_probs=23.6
Q ss_pred hHHHHHHHHHHhcccCCCceEEEEeCCceeeEE
Q psy1421 35 EKDIAAYIKKEFDKKYNPTWHCIVGRNFGSYVT 67 (89)
Q Consensus 35 ~~~iA~~iK~~lD~~yG~~Wh~vVG~~fg~~~t 67 (89)
..++|+.+...+|..-....+++||.|+|+.+.
T Consensus 136 ~~~~~~~l~~~l~~l~~~~~~~lvGhS~Gg~ia 168 (377)
T 2b61_A 136 VQDIVKVQKALLEHLGISHLKAIIGGSFGGMQA 168 (377)
T ss_dssp HHHHHHHHHHHHHHTTCCCEEEEEEETHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCcceeEEEEEChhHHHH
Confidence 456777777777655446677799999997754
No 26
>3icx_A PRE mRNA splicing protein; C/D guide RNA, 2'-O-methylation, coiled-coil, RNA binding PR; 3.10A {Sulfolobus solfataricus}
Probab=32.15 E-value=62 Score=22.35 Aligned_cols=39 Identities=26% Similarity=0.419 Sum_probs=26.9
Q ss_pred eCCCCHHHHHHHHHHHHHHHhhcCchHHHHHHHHHHhcc
Q psy1421 10 NADMSEEMQQDAVDCATQALEKYNIEKDIAAYIKKEFDK 48 (89)
Q Consensus 10 ~~dM~~~mq~~i~~~~~~a~~~~~~~~~iA~~iK~~lD~ 48 (89)
..+++++....|.+.|...++-...-+++.++|+..|..
T Consensus 89 G~~ls~~dl~~i~~~~~~v~~L~~~r~~l~~yl~srM~~ 127 (255)
T 3icx_A 89 GADISEDDLSAMRMIANTILDLYNIRRNLNNYLEGVMKE 127 (255)
T ss_dssp CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 357778788888888877766555445677777766643
No 27
>2xzr_A Immunoglobulin-binding protein EIBD; cell adhesion, trimeric autotransporter adhesin, TAA; 2.80A {Enterobacteria phage p-eibd}
Probab=31.96 E-value=51 Score=19.76 Aligned_cols=28 Identities=39% Similarity=0.417 Sum_probs=14.4
Q ss_pred HHHHHHHHHHHHHHhhcCchHHHHHHHHH
Q psy1421 16 EMQQDAVDCATQALEKYNIEKDIAAYIKK 44 (89)
Q Consensus 16 ~mq~~i~~~~~~a~~~~~~~~~iA~~iK~ 44 (89)
+|++.+-..+--+-+.|-.++++|. ||+
T Consensus 77 EMKq~aaqsaaLlsk~yh~ene~ar-~kk 104 (114)
T 2xzr_A 77 EMKQIEDKIEEILSKIYHIENEIAR-IKK 104 (114)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH-HHH
T ss_pred HHHHHHHHHHHHHHHhhHHHHHHHH-HHH
Confidence 3444444444334445556777776 444
No 28
>3i1i_A Homoserine O-acetyltransferase; structural genomics, IDP01610, O-acetyltransfera bacillus anthracis; HET: MSE; 2.44A {Bacillus anthracis str}
Probab=31.61 E-value=15 Score=24.35 Aligned_cols=32 Identities=16% Similarity=0.212 Sum_probs=22.9
Q ss_pred HHHHHHHHHHhcccCCCceEEEEeCCceeeEE
Q psy1421 36 KDIAAYIKKEFDKKYNPTWHCIVGRNFGSYVT 67 (89)
Q Consensus 36 ~~iA~~iK~~lD~~yG~~Wh~vVG~~fg~~~t 67 (89)
.++|+.+..-+|..-.+.-+++||.|+|+.+.
T Consensus 130 ~~~~~d~~~~l~~l~~~~~~ilvGhS~Gg~ia 161 (377)
T 3i1i_A 130 LDVARMQCELIKDMGIARLHAVMGPSAGGMIA 161 (377)
T ss_dssp HHHHHHHHHHHHHTTCCCBSEEEEETHHHHHH
T ss_pred HHHHHHHHHHHHHcCCCcEeeEEeeCHhHHHH
Confidence 56777777777665445566799999997654
No 29
>2xyk_A 2-ON-2 hemoglobin; oxygen storage-transport complex; HET: HEM; 2.10A {Agrobacterium tumefaciens}
Probab=30.88 E-value=85 Score=18.88 Aligned_cols=36 Identities=8% Similarity=0.151 Sum_probs=28.4
Q ss_pred CCCHHHHHHHHHHHHHHHhhcCchHHHHHHHHHHhc
Q psy1421 12 DMSEEMQQDAVDCATQALEKYNIEKDIAAYIKKEFD 47 (89)
Q Consensus 12 dM~~~mq~~i~~~~~~a~~~~~~~~~iA~~iK~~lD 47 (89)
.++++.....++...+|+++.....+.++.+...+.
T Consensus 84 ~I~~~~fd~Wl~~~~~al~e~~~~~~~~~~l~~~~~ 119 (133)
T 2xyk_A 84 PIGPAERDEWLLCFRRAMDETIENAKLREIIWAPVE 119 (133)
T ss_dssp CCCHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHH
T ss_pred CcCHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHH
Confidence 468889999999999999998766666666666654
No 30
>2zet_C Melanophilin; complex, GTP-binding protein, GTPase, G-protein, RAB, RAB27B, effector, SLP homology domain, acetylation, lipoprotein, membrane; HET: GTP; 3.00A {Mus musculus}
Probab=30.59 E-value=67 Score=20.33 Aligned_cols=38 Identities=11% Similarity=0.175 Sum_probs=27.4
Q ss_pred CCCCHHHHHHHHHHHHHHHhhcCchHHHHHHHHHHhcc
Q psy1421 11 ADMSEEMQQDAVDCATQALEKYNIEKDIAAYIKKEFDK 48 (89)
Q Consensus 11 ~dM~~~mq~~i~~~~~~a~~~~~~~~~iA~~iK~~lD~ 48 (89)
+-++++.++.|++....+.+.-..|.+.-..||+.|++
T Consensus 15 s~LteeEr~~Il~VL~Rd~~l~~~EeeRi~kLk~~l~~ 52 (153)
T 2zet_C 15 STLTDEEAEHVWAVVQRDFDLRRREEERLQGLKGKIQK 52 (153)
T ss_dssp TTSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccCCHHHHHHHHHHHHhHHHHHHhHHHHHHHHHHHHHH
Confidence 56788999999888887766555555666667776665
No 31
>1dlw_A Hemoglobin; oxygen storage/transport complex; HET: HEM; 1.54A {Paramecium caudatum} SCOP: a.1.1.1 PDB: 1uvy_A*
Probab=30.02 E-value=83 Score=18.11 Aligned_cols=37 Identities=8% Similarity=0.047 Sum_probs=29.1
Q ss_pred CCCHHHHHHHHHHHHHHHhhcCchHHHHHHHHHHhcc
Q psy1421 12 DMSEEMQQDAVDCATQALEKYNIEKDIAAYIKKEFDK 48 (89)
Q Consensus 12 dM~~~mq~~i~~~~~~a~~~~~~~~~iA~~iK~~lD~ 48 (89)
.++++.....++...+|+++.....+.++.+...+..
T Consensus 72 ~I~~~~f~~wl~~~~~al~~~~~~~~~~~~~~~~~~~ 108 (116)
T 1dlw_A 72 GVSNAQFTTVIGHLRSALTGAGVAAALVEQTVAVAET 108 (116)
T ss_dssp CCCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHT
T ss_pred CcCHHHHHHHHHHHHHHHHHcCcCHHHHHHHHHHHHH
Confidence 4778889999999999999987666677777666653
No 32
>2ozb_B U4/U6 small nuclear ribonucleoprotein PRP31; RNA-protein complex, ribonucleoprotein particle (RNP), PRE-M splicing, U4/U6 DI-snRNA, U4/U6 DI-snRNP; 2.60A {Homo sapiens} SCOP: a.183.1.1 PDB: 3siu_B 3siv_B
Probab=29.48 E-value=73 Score=21.96 Aligned_cols=39 Identities=21% Similarity=0.256 Sum_probs=28.5
Q ss_pred eCCCCHHHHHHHHHHHHHHHhhcCchHHHHHHHHHHhcc
Q psy1421 10 NADMSEEMQQDAVDCATQALEKYNIEKDIAAYIKKEFDK 48 (89)
Q Consensus 10 ~~dM~~~mq~~i~~~~~~a~~~~~~~~~iA~~iK~~lD~ 48 (89)
..+++++.-..|.+.|..+++-...-+++.++|+..|..
T Consensus 103 G~~ls~~dl~~i~~~~~~v~~L~~~r~~l~~yl~~rM~~ 141 (260)
T 2ozb_B 103 GQQLSEEELERLEEACDMALELNASKHRIYEYVESRMSF 141 (260)
T ss_dssp CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 578888888888888888876555445677777776643
No 33
>3k6g_A Telomeric repeat-binding factor 2-interacting Pro; helix, chromosomal protein, nucleus, phosphoprotein, telomer cycle, DNA-binding, protein binding; 1.95A {Homo sapiens}
Probab=27.79 E-value=25 Score=21.37 Aligned_cols=21 Identities=29% Similarity=0.403 Sum_probs=12.7
Q ss_pred CHHHHHHHHHHHHHHHhhcCc
Q psy1421 14 SEEMQQDAVDCATQALEKYNI 34 (89)
Q Consensus 14 ~~~mq~~i~~~~~~a~~~~~~ 34 (89)
++.--..++++++.++.+++.
T Consensus 6 s~~~vg~~~~~i~~lMeef~~ 26 (111)
T 3k6g_A 6 SQPEVGAAIKIIRQLMEKFNL 26 (111)
T ss_dssp CHHHHHHHHHHHHHHHHHTTC
T ss_pred CCCcccHHHHHHHHHHHHHhh
Confidence 344445556777777777653
No 34
>1wj7_A Hypothetical protein (RSGI RUH-015); UBA domain, ubiquitin associated domain, structural genomics, riken structural genomics/proteomics initiative; NMR {Mus musculus} SCOP: a.5.2.1
Probab=27.56 E-value=14 Score=22.26 Aligned_cols=35 Identities=17% Similarity=0.230 Sum_probs=22.8
Q ss_pred HHHHHHhhcCchHHHHHHHHHHhcccC-CCceEEEEeC
Q psy1421 24 CATQALEKYNIEKDIAAYIKKEFDKKY-NPTWHCIVGR 60 (89)
Q Consensus 24 ~~~~a~~~~~~~~~iA~~iK~~lD~~y-G~~Wh~vVG~ 60 (89)
.|+.||..++. |+++.|..-|+..- ...|.++.++
T Consensus 56 eAr~AL~~~ng--Dl~~AI~~Lleg~~~~~~W~~~~kK 91 (104)
T 1wj7_A 56 ECVIALHDCNG--DVNRAINVLLEGNPDTHSWEMVGKK 91 (104)
T ss_dssp HHHHHHHHHTS--CHHHHHHHHHTCSSSCSSCSSCCCC
T ss_pred HHHHHHHHcCC--CHHHHHHHHHhCCCcCCceeeeccc
Confidence 36677776653 35555666666553 4679998877
No 35
>2qjz_A Microtubule-associated protein RP/EB family member 1; calponin homology domain, microtubule plus END, +TIP, protein binding; 1.25A {Homo sapiens} SCOP: a.40.1.1 PDB: 1pa7_A 1ueg_A 3co1_A 1v5k_A
Probab=27.25 E-value=40 Score=20.66 Aligned_cols=42 Identities=19% Similarity=0.383 Sum_probs=29.3
Q ss_pred eCCCCHHHHHHHHHHHHHHHhhcCc----------------hHHHHHHHHHHhcccCCC
Q psy1421 10 NADMSEEMQQDAVDCATQALEKYNI----------------EKDIAAYIKKEFDKKYNP 52 (89)
Q Consensus 10 ~~dM~~~mq~~i~~~~~~a~~~~~~----------------~~~iA~~iK~~lD~~yG~ 52 (89)
.+.++-++.+++ .+..+|+++++. .-|.++.+|+.+|+.|++
T Consensus 54 ~a~~e~e~~~N~-k~lq~af~k~gV~k~i~v~kLvkgk~qdnleflqW~k~f~d~n~~~ 111 (123)
T 2qjz_A 54 QAKLEHEYIQNF-KILQAGFKRMGVDKIIPVDKLVKGKFQDNFEFVQWFKKFFDANYDG 111 (123)
T ss_dssp TCCSHHHHHHHH-HHHHHHHHHHTCCCCCCHHHHTTCCHHHHHHHHHHHHHHHHHHCCC
T ss_pred CCCChHHHHHHH-HHHHHHHHHcCCCCccCHHHHHcCCchhHHHHHHHHHHHHHHcCCC
Confidence 566666666665 445556666532 137899999999999974
No 36
>3byp_A CZRB protein; membrane protein, zinc transporter, transport protein; 1.70A {Thermus thermophilus} SCOP: d.52.9.1 PDB: 3byr_A
Probab=25.86 E-value=54 Score=18.09 Aligned_cols=22 Identities=0% Similarity=0.208 Sum_probs=18.0
Q ss_pred HHHHHHHHHhcccCCCceEEEEe
Q psy1421 37 DIAAYIKKEFDKKYNPTWHCIVG 59 (89)
Q Consensus 37 ~iA~~iK~~lD~~yG~~Wh~vVG 59 (89)
+++..|++.|-++||.. |+.|-
T Consensus 61 ~i~~~ie~~l~~~~~~~-~vtIh 82 (94)
T 3byp_A 61 RLCDELERALAQAFPGL-QATIH 82 (94)
T ss_dssp HHHHHHHHHHHHHSTTE-EEEEE
T ss_pred HHHHHHHHHHHHHCCCC-EEEEE
Confidence 57888899998889877 88774
No 37
>3vba_A Isopropylmalate/citramalate isomerase small subun; lyase, LEUD, cytosol; 2.00A {Methanocaldococcus jannaschii}
Probab=24.62 E-value=29 Score=22.66 Aligned_cols=17 Identities=35% Similarity=0.462 Sum_probs=12.4
Q ss_pred cCCCceEEEEeCCceee
Q psy1421 49 KYNPTWHCIVGRNFGSY 65 (89)
Q Consensus 49 ~yG~~Wh~vVG~~fg~~ 65 (89)
++-+.+=+|.|+|||+=
T Consensus 50 ~~~~g~IlVaG~NFG~G 66 (176)
T 3vba_A 50 KVKPGDIIVGGKNFGCG 66 (176)
T ss_dssp HCCTTCEEEECTTBTBS
T ss_pred hcCCCCEEEeCCCccCC
Confidence 45566778888899863
No 38
>1zoq_C CREB-binding protein, interferon regulatory factor 3; transcription regulation, transferase, transcription/transferase complex; 2.37A {Homo sapiens} SCOP: a.153.1.1 PDB: 1jjs_A
Probab=24.07 E-value=82 Score=16.12 Aligned_cols=28 Identities=25% Similarity=0.296 Sum_probs=19.6
Q ss_pred CHHHHHHHHHHHHHHHhhcCchHHHHHHHHHHhc
Q psy1421 14 SEEMQQDAVDCATQALEKYNIEKDIAAYIKKEFD 47 (89)
Q Consensus 14 ~~~mq~~i~~~~~~a~~~~~~~~~iA~~iK~~lD 47 (89)
+++.|..|+.+-+ .+..-||.+||++--
T Consensus 15 sp~qqqqvl~ILk------snPqLMAAfIkQR~~ 42 (47)
T 1zoq_C 15 SPQQQQQVLNILK------SNPQLMAAFIKQRTA 42 (47)
T ss_dssp CHHHHHHHHHHHH------TCHHHHHHHHHHTTT
T ss_pred CHHHHHHHHHHHH------cCHHHHHHHHHHHHH
Confidence 6777888777654 234558999998743
No 39
>3kyz_A Sensor protein PFES; APC37897.4, the sensor domain of two-component sensor PFES, pseudomonas aeruginosa PA01, structural genomics, PSI-2; 1.50A {Pseudomonas aeruginosa}
Probab=23.81 E-value=1.3e+02 Score=18.43 Aligned_cols=54 Identities=19% Similarity=0.246 Sum_probs=33.6
Q ss_pred cEEEeCCCCHHHHHHHHHHHHHHHhhc--CchHHHHHHHHHHhcccCCCceEEEEeCC
Q psy1421 6 AVIKNADMSEEMQQDAVDCATQALEKY--NIEKDIAAYIKKEFDKKYNPTWHCIVGRN 61 (89)
Q Consensus 6 ~~v~~~dM~~~mq~~i~~~~~~a~~~~--~~~~~iA~~iK~~lD~~yG~~Wh~vVG~~ 61 (89)
.+-..+-+|++-|+.+.+.|.+|-.-. ++..++++.+++ |-++ .++|=.||+.+
T Consensus 8 ~e~~~~~l~~~~q~~L~~~A~~Ae~~~~~g~~~~L~~W~~~-l~~~-e~~w~~Vl~~~ 63 (125)
T 3kyz_A 8 VERSTYFLAPADRHYLADYARQAEDAWRREGAAGAERFRKE-LSAK-EDTWVALVGPH 63 (125)
T ss_dssp -----CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHH-HTSCEEEECTT
T ss_pred HHHHHccCCHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHH-HHhh-cCEEEEEecCC
Confidence 445667889999999999999984433 233445555443 1111 47899999884
No 40
>2hcu_A 3-isopropylmalate dehydratase small subunit; beta barrel, lyase; 2.10A {Streptococcus mutans}
Probab=23.37 E-value=36 Score=22.88 Aligned_cols=17 Identities=35% Similarity=0.534 Sum_probs=13.4
Q ss_pred cCCCceEEEEeCCceee
Q psy1421 49 KYNPTWHCIVGRNFGSY 65 (89)
Q Consensus 49 ~yG~~Wh~vVG~~fg~~ 65 (89)
+|.+..=+|+|++|||=
T Consensus 82 ~~~~~~IlvaG~NfGcG 98 (213)
T 2hcu_A 82 EYREASILITGDNFGAG 98 (213)
T ss_dssp GGTTCCEEEECSSBTCS
T ss_pred hhcCCcEEEecCCCCCC
Confidence 46677888999999863
No 41
>2bkm_A Truncated hemoglobin from geobacillus stearothermophilus; hypothetical protein, oxygen transport, transport, oxygen storage; HET: HEM; 1.5A {Geobacillus stearothermophilus}
Probab=23.19 E-value=1.2e+02 Score=17.77 Aligned_cols=36 Identities=6% Similarity=0.197 Sum_probs=25.6
Q ss_pred CCCHHHHHHHHHHHHHHHhhcCchHHHHHHHHHHhc
Q psy1421 12 DMSEEMQQDAVDCATQALEKYNIEKDIAAYIKKEFD 47 (89)
Q Consensus 12 dM~~~mq~~i~~~~~~a~~~~~~~~~iA~~iK~~lD 47 (89)
.++++.....++....|+++.....++++.+...++
T Consensus 79 ~I~~~~fd~wl~~~~~al~e~~~~~~~~~~~~~~~~ 114 (128)
T 2bkm_A 79 EITPKRAEAWLACMRAAMDEIGLSGPAREQFYHRLV 114 (128)
T ss_dssp CCCHHHHHHHHHHHHHHHHHTTCCSHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHH
Confidence 468888999999999999987644445555544443
No 42
>2dst_A Hypothetical protein TTHA1544; conserved hypothetical protein, structural genomics, NPPSFA; 2.00A {Thermus thermophilus} SCOP: c.69.1.39
Probab=23.03 E-value=60 Score=18.43 Aligned_cols=31 Identities=10% Similarity=0.027 Sum_probs=18.6
Q ss_pred HHHHHHHHHHhcccCCCceEEEEeCCceeeEE
Q psy1421 36 KDIAAYIKKEFDKKYNPTWHCIVGRNFGSYVT 67 (89)
Q Consensus 36 ~~iA~~iK~~lD~~yG~~Wh~vVG~~fg~~~t 67 (89)
.+.++.+...+|..-.... ++||.|+|+.++
T Consensus 64 ~~~~~~~~~~~~~~~~~~~-~lvG~S~Gg~~a 94 (131)
T 2dst_A 64 EELAHFVAGFAVMMNLGAP-WVLLRGLGLALG 94 (131)
T ss_dssp HHHHHHHHHHHHHTTCCSC-EEEECGGGGGGH
T ss_pred HHHHHHHHHHHHHcCCCcc-EEEEEChHHHHH
Confidence 3455556555554433344 478999997653
No 43
>2l48_A N-acetylmuramoyl-L-alanine amidase; bacillus anthracis gamma- phage endolysin, PLYG, cell WALL B domain, homodimer, ACT-type domain; NMR {Bacillus phage gamma}
Probab=22.92 E-value=30 Score=20.11 Aligned_cols=15 Identities=27% Similarity=0.561 Sum_probs=11.2
Q ss_pred hHHHHHHHHHHhcccCC
Q psy1421 35 EKDIAAYIKKEFDKKYN 51 (89)
Q Consensus 35 ~~~iA~~iK~~lD~~yG 51 (89)
..++.+ +|.+||+| |
T Consensus 65 ~~eLdk-~t~wLD~r-g 79 (85)
T 2l48_A 65 DAQLKA-MKEYLDRK-G 79 (85)
T ss_dssp HHHHHH-HHHHHHHT-T
T ss_pred HHHHHH-HHHHHhcc-C
Confidence 345554 99999998 5
No 44
>2pkp_A Homoaconitase small subunit; beta barrel, amino-acid biosynthesis, leucine biosynthesis, structural genomics, NPPSFA; 2.10A {Methanocaldococcus jannaschii}
Probab=22.53 E-value=33 Score=22.16 Aligned_cols=17 Identities=29% Similarity=0.329 Sum_probs=12.8
Q ss_pred cCCCceEEEEeCCceee
Q psy1421 49 KYNPTWHCIVGRNFGSY 65 (89)
Q Consensus 49 ~yG~~Wh~vVG~~fg~~ 65 (89)
++-+.|=+|.|++||+=
T Consensus 48 ~~~~~~iivaG~nfG~G 64 (170)
T 2pkp_A 48 KVKEGDVIVAGENFGCG 64 (170)
T ss_dssp HCCTTCEEEECTTBTBS
T ss_pred hCCCCCEEEecCCCCCC
Confidence 34567888999999863
No 45
>2bmm_A Thermostable hemoglobin from thermobifida fusca; bacterial hemoglobin, thermostable protein, oxygen storage/transport; HET: HEM; 2.48A {Thermobifida fusca}
Probab=22.37 E-value=1.2e+02 Score=17.51 Aligned_cols=36 Identities=6% Similarity=0.088 Sum_probs=26.7
Q ss_pred CCCHHHHHHHHHHHHHHHhhcCchHHHHHHHHHHhc
Q psy1421 12 DMSEEMQQDAVDCATQALEKYNIEKDIAAYIKKEFD 47 (89)
Q Consensus 12 dM~~~mq~~i~~~~~~a~~~~~~~~~iA~~iK~~lD 47 (89)
.++++.....++...+|+++.....++++.+...+.
T Consensus 77 ~I~~~~f~~wl~~~~~al~e~~~~~~~~~~~~~~~~ 112 (123)
T 2bmm_A 77 RIGAEERDRWLTHMRAAVDDLALPAHLEQQLWEYLV 112 (123)
T ss_dssp CCCHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHH
Confidence 467888899999999999987655566665655554
No 46
>4fz4_A 0197-18KD, uncharacterized protein conserved in bacteria; surface antigen, immune system; 2.44A {Streptococcus suis}
Probab=22.34 E-value=1.6e+02 Score=18.89 Aligned_cols=29 Identities=10% Similarity=0.116 Sum_probs=20.5
Q ss_pred HHHHHHhhcCchHHHHHHHHHHhcccCCC
Q psy1421 24 CATQALEKYNIEKDIAAYIKKEFDKKYNP 52 (89)
Q Consensus 24 ~~~~a~~~~~~~~~iA~~iK~~lD~~yG~ 52 (89)
.+..-.++|++..+|-+.+|+.|.+.+++
T Consensus 88 qVa~YrkKYp~n~eIe~eyk~~l~qt~~~ 116 (154)
T 4fz4_A 88 QVAELRKKYPGDNTIEEEYNAHLKQDEGK 116 (154)
T ss_dssp HHHHHHHHSCSCHHHHHHHHHHTCCCSSS
T ss_pred HHHHHHHhCCCchHHHHHHHHHHhhcccc
Confidence 33344778988888878788777776654
No 47
>2hjq_A Hypothetical protein YQBF; two-domain, structure, BSU26130, NESG, structural genomics, PSI-2, protein structure initiative; NMR {Bacillus subtilis} SCOP: a.140.3.2 d.344.1.1
Probab=22.09 E-value=96 Score=18.65 Aligned_cols=39 Identities=18% Similarity=0.306 Sum_probs=28.7
Q ss_pred CCCCHHHHHHHHHHHHHHHhhcCchHHHHHHHHHHhccc
Q psy1421 11 ADMSEEMQQDAVDCATQALEKYNIEKDIAAYIKKEFDKK 49 (89)
Q Consensus 11 ~dM~~~mq~~i~~~~~~a~~~~~~~~~iA~~iK~~lD~~ 49 (89)
.+|+.+-|+.|+.---.-...+++++|-..+|-+..|.+
T Consensus 63 K~m~Kaeqe~iI~~LG~~~~d~KNe~ERIa~ILe~~~~~ 101 (111)
T 2hjq_A 63 KGMNKAEHESIISNLGRNPSDFKNADERIAYILKQIDNK 101 (111)
T ss_dssp HTCCHHHHHHHHHHHTCCTTSCCSHHHHHHHHHHHHTTC
T ss_pred hhhhhhhHHHHHHHhCCCchhhcChhHHHHHHHHHcccc
Confidence 368888888887755444566777888777788888876
No 48
>2kl8_A OR15; structural genomics, PSI-2, protein structure initiative, de novo protein, ferrodoxin fold; NMR {Artificial gene}
Probab=21.81 E-value=1.1e+02 Score=16.93 Aligned_cols=29 Identities=10% Similarity=0.257 Sum_probs=16.1
Q ss_pred CccEEEeCCCCHHHHHHHHHHHHHHHhhc
Q psy1421 4 RKAVIKNADMSEEMQQDAVDCATQALEKY 32 (89)
Q Consensus 4 ~~~~v~~~dM~~~mq~~i~~~~~~a~~~~ 32 (89)
++.+|.-+..|++.+.+....+....+++
T Consensus 40 ndleiritgvpeqvrkelakeaerlakef 68 (85)
T 2kl8_A 40 NDLEIRITGVPEQVRKELAKEAERLAKEF 68 (85)
T ss_dssp SCEEEEEESCCHHHHHHHHHHHHHHHHHT
T ss_pred CeeEEEEecChHHHHHHHHHHHHHHHHhc
Confidence 45666666677766665544444433333
No 49
>3zzp_A TS9, ribosomal protein S6; protein folding, RNA-binding; 0.96A {Thermus thermophilus}
Probab=21.24 E-value=1.2e+02 Score=16.83 Aligned_cols=26 Identities=19% Similarity=0.373 Sum_probs=20.7
Q ss_pred cEEEeCCCCHHHHHHHHHHHHHHHhh
Q psy1421 6 AVIKNADMSEEMQQDAVDCATQALEK 31 (89)
Q Consensus 6 ~~v~~~dM~~~mq~~i~~~~~~a~~~ 31 (89)
+-|...|++++....+++.....+.+
T Consensus 49 m~Il~P~l~ee~~~~~vek~~~~i~~ 74 (77)
T 3zzp_A 49 NIVLNPNLDQSQLQNEKEIIQRALEN 74 (77)
T ss_dssp EEEECTTCCHHHHHHHHHHHHHHHHH
T ss_pred EEEECCCCCHHHHHHHHHHHHHHHHh
Confidence 45678999999888888888777654
No 50
>3vp5_A Transcriptional regulator; heme, sensor protein, TETR superf transcription; HET: HEM; 1.90A {Lactococcus lactis} PDB: 3vox_A 3vok_A*
Probab=20.91 E-value=1.5e+02 Score=17.83 Aligned_cols=31 Identities=13% Similarity=0.168 Sum_probs=23.6
Q ss_pred CCCCHHHHHHHHHHHHHHHhhcCc----hHHHHHH
Q psy1421 11 ADMSEEMQQDAVDCATQALEKYNI----EKDIAAY 41 (89)
Q Consensus 11 ~dM~~~mq~~i~~~~~~a~~~~~~----~~~iA~~ 41 (89)
..|+++.++.|++.|.+.+.+.+. .++||+.
T Consensus 7 ~~~~~~tr~~Il~aa~~l~~~~G~~~~ti~~Ia~~ 41 (189)
T 3vp5_A 7 FSLSDEKRNRVYDACLNEFQTHSFHEAKIMHIVKA 41 (189)
T ss_dssp HTSCHHHHHHHHHHHHHHHHHSCTTTCCHHHHHHH
T ss_pred hhCCHHHHHHHHHHHHHHHHHCCcccccHHHHHHH
Confidence 468889999999999998887653 3566654
No 51
>2pl5_A Homoserine O-acetyltransferase; alpha/beta hydrolase superfa transferase; 2.20A {Leptospira interrogans} SCOP: c.69.1.40
Probab=20.86 E-value=45 Score=21.94 Aligned_cols=33 Identities=15% Similarity=0.218 Sum_probs=21.4
Q ss_pred hHHHHHHHHHHhcccCCCceEEEEeCCceeeEE
Q psy1421 35 EKDIAAYIKKEFDKKYNPTWHCIVGRNFGSYVT 67 (89)
Q Consensus 35 ~~~iA~~iK~~lD~~yG~~Wh~vVG~~fg~~~t 67 (89)
..++|+.|...+|.--.....++||.|+|+.++
T Consensus 127 ~~~~~~dl~~~l~~l~~~~~~~lvGhS~Gg~ia 159 (366)
T 2pl5_A 127 IQDMVKAQKLLVESLGIEKLFCVAGGSMGGMQA 159 (366)
T ss_dssp HHHHHHHHHHHHHHTTCSSEEEEEEETHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCceEEEEEEeCccHHHH
Confidence 345666666666654334444689999997654
No 52
>1zbd_B Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: g.50.1.1
Probab=20.75 E-value=72 Score=19.70 Aligned_cols=39 Identities=8% Similarity=0.166 Sum_probs=27.6
Q ss_pred eCCCCHHHHHHHHHHHHHHHhhcCchHHHHHHHHHHhcc
Q psy1421 10 NADMSEEMQQDAVDCATQALEKYNIEKDIAAYIKKEFDK 48 (89)
Q Consensus 10 ~~dM~~~mq~~i~~~~~~a~~~~~~~~~iA~~iK~~lD~ 48 (89)
.+-++++-++.|++....+-+.-..|.+.-..|++.|++
T Consensus 7 ls~LteeE~~~Il~Vl~Rd~~l~~~E~~ri~kL~~~l~~ 45 (134)
T 1zbd_B 7 QEELTDEEKEIINRVIARAEKMETMEQERIGRLVDRLET 45 (134)
T ss_dssp -CCCCSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cccCCHHHHHHHHHHHhhHHHHHHhHHHHHHHHHHHHHH
Confidence 355677888888887777766556666777778877775
No 53
>2k42_B Espfu; WAsp, GBD, autoinhibition, cytoplasm, cytoskeleton, disease mutation, phosphoprotein, signaling protein; NMR {Escherichia coli O157}
Probab=20.48 E-value=51 Score=16.02 Aligned_cols=12 Identities=17% Similarity=0.401 Sum_probs=9.2
Q ss_pred HHHHHHHHHhcc
Q psy1421 37 DIAAYIKKEFDK 48 (89)
Q Consensus 37 ~iA~~iK~~lD~ 48 (89)
.||+.||+.|-.
T Consensus 6 pIAQaLk~HLAa 17 (36)
T 2k42_B 6 DVAQRLMQHLAE 17 (36)
T ss_dssp SHHHHHHHHHHT
T ss_pred HHHHHHHHHHHH
Confidence 488899988853
No 54
>1rm1_A Tata-box binding protein; yeast TFIIA, TBP protein, ATA-box DNA, transcription/DNA complex; 2.50A {Saccharomyces cerevisiae} SCOP: d.129.1.1 d.129.1.1
Probab=20.47 E-value=78 Score=21.60 Aligned_cols=38 Identities=26% Similarity=0.530 Sum_probs=27.0
Q ss_pred CceEEEEeC-Ccee------------eEEEcCCcE--EEEEe--CCEEEEEEeeC
Q psy1421 52 PTWHCIVGR-NFGS------------YVTHETRHF--IYFYL--GQVAILLFKSG 89 (89)
Q Consensus 52 ~~Wh~vVG~-~fg~------------~~th~~~~~--~~f~~--~~~~~lv~kt~ 89 (89)
+.=+=||+. +.++ ...|+|+.| +-+++ ....+|||.||
T Consensus 65 ~~I~NIVas~~l~~~ldL~~ia~~~~n~eYePe~Fpgli~Rl~~Pk~t~lIF~SG 119 (240)
T 1rm1_A 65 PTLQNIVATVTLGCRLDLKTVALHARNAEYNPKRFAAVIMRIREPKTTALIFASG 119 (240)
T ss_dssp CEEEEEEEEEECCSCCCHHHHHHHBTTEEECTTTCSEEEEEEETTEEEEEEETTS
T ss_pred eEEEEEEEEEEcCCccCHHHHHhhCCCcEEcCcccceEEEEeCCCcEEEEEECCC
Confidence 445666666 5554 459999875 66666 57799999987
No 55
>3pla_A NOP5, PRE mRNA splicing protein; RNA-binding, SAM, box C/D RNA; HET: SAH; 3.15A {Sulfolobus solfataricus} PDB: 3id5_A*
Probab=20.37 E-value=1.3e+02 Score=22.09 Aligned_cols=38 Identities=26% Similarity=0.420 Sum_probs=25.4
Q ss_pred eCCCCHHHHHHHHHHHHHHHhhcCchHHHHHHHHHHhc
Q psy1421 10 NADMSEEMQQDAVDCATQALEKYNIEKDIAAYIKKEFD 47 (89)
Q Consensus 10 ~~dM~~~mq~~i~~~~~~a~~~~~~~~~iA~~iK~~lD 47 (89)
..+++++....|.+.|...++-...-+++.++|+..|.
T Consensus 222 G~~ls~~dl~~I~~~~~~v~~L~e~R~~L~~Yl~srM~ 259 (388)
T 3pla_A 222 GADISEDDLSAMRMIANTILDLYNIRRNLNNYLEGVMK 259 (388)
T ss_dssp CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35677777777777777776654444567777776664
No 56
>1ux8_A YJBI protein; oxygen storage/transport, truncated hemoglobin, oxygen transport; HET: HEM; 2.15A {Bacillus subtilis} SCOP: a.1.1.1
Probab=20.05 E-value=1.4e+02 Score=17.74 Aligned_cols=36 Identities=14% Similarity=0.416 Sum_probs=24.9
Q ss_pred CCCHHHHHHHHHHHHHHHhhcCchHHHHHHHHHHhc
Q psy1421 12 DMSEEMQQDAVDCATQALEKYNIEKDIAAYIKKEFD 47 (89)
Q Consensus 12 dM~~~mq~~i~~~~~~a~~~~~~~~~iA~~iK~~lD 47 (89)
.++++.....++....|+++.....++++.+...+.
T Consensus 80 ~I~~~~fd~wl~~~~~al~e~~~~~~~~~~~~~~~~ 115 (132)
T 1ux8_A 80 PITNERADAWLSCMKDAMDHVGLEGEIREFLFGRLE 115 (132)
T ss_dssp CCCHHHHHHHHHHHHHHHHHHTCCSHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHH
Confidence 467888899999999999987544444444444443
Done!