RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy1421
(89 letters)
>gnl|CDD|185421 PTZ00059, PTZ00059, dynein light chain; Provisional.
Length = 90
Score = 188 bits (479), Expect = 2e-64
Identities = 83/89 (93%), Positives = 88/89 (98%)
Query: 1 MSDRKAVIKNADMSEEMQQDAVDCATQALEKYNIEKDIAAYIKKEFDKKYNPTWHCIVGR 60
MSDRKAV+KNADMSE+MQQDA+DCA QALEK+NIEKDIAAYIKKEFDKKYNPTWHCIVGR
Sbjct: 2 MSDRKAVVKNADMSEDMQQDAIDCANQALEKFNIEKDIAAYIKKEFDKKYNPTWHCIVGR 61
Query: 61 NFGSYVTHETRHFIYFYLGQVAILLFKSG 89
NFGSYVTHET+HFIYFYLGQVAILLFKSG
Sbjct: 62 NFGSYVTHETKHFIYFYLGQVAILLFKSG 90
>gnl|CDD|189895 pfam01221, Dynein_light, Dynein light chain type 1.
Length = 86
Score = 173 bits (440), Expect = 2e-58
Identities = 68/86 (79%), Positives = 81/86 (94%)
Query: 4 RKAVIKNADMSEEMQQDAVDCATQALEKYNIEKDIAAYIKKEFDKKYNPTWHCIVGRNFG 63
KAV+KNADM EEMQ+DA++CA +ALEK+N+EKDIAA+IKKEFDKKY PTWHCIVG+NFG
Sbjct: 1 GKAVVKNADMPEEMQEDAIECAAEALEKFNVEKDIAAHIKKEFDKKYGPTWHCIVGKNFG 60
Query: 64 SYVTHETRHFIYFYLGQVAILLFKSG 89
SYVTHET+HFIYFY+GQ+A LLFK+G
Sbjct: 61 SYVTHETKHFIYFYIGQLAFLLFKTG 86
>gnl|CDD|166697 PLN03058, PLN03058, dynein light chain type 1 family protein;
Provisional.
Length = 128
Score = 81.2 bits (200), Expect = 2e-21
Identities = 39/84 (46%), Positives = 52/84 (61%), Gaps = 3/84 (3%)
Query: 8 IKNADMSEEMQQDAVDCATQALEKYNIEKD---IAAYIKKEFDKKYNPTWHCIVGRNFGS 64
++ +DM +Q A CA L+ + D +A +KKEFD Y P WHCIVG +FGS
Sbjct: 38 VRASDMPLVLQNRAFSCARDILDAMPGKLDSKRLALALKKEFDSAYGPAWHCIVGTSFGS 97
Query: 65 YVTHETRHFIYFYLGQVAILLFKS 88
YVTH T F+YF + +V ILLFK+
Sbjct: 98 YVTHSTGGFLYFSIDKVYILLFKT 121
>gnl|CDD|236101 PRK07803, sdhA, succinate dehydrogenase flavoprotein subunit;
Reviewed.
Length = 626
Score = 30.4 bits (69), Expect = 0.088
Identities = 19/55 (34%), Positives = 28/55 (50%), Gaps = 11/55 (20%)
Query: 1 MSDRKAVIKNADMSEEMQQDAVDCATQALEKYNIEKDIAAYIKKEFDKKYNPTWH 55
M+D +I+ D E++Q ALEK K+ AA + E ++YNP WH
Sbjct: 492 MNDLVGIIRKED---EIEQ--------ALEKLAELKERAANVSVEGHRQYNPGWH 535
>gnl|CDD|221710 pfam12685, SpoIIIAH, SpoIIIAH-like protein. Stage III
sporulation protein AH (SpoIIIAH) is a protein that is
involved in forespore engulfment. It forms a channel
with SpoIIIAH that is open on the forespore end and
closed (or gated) on the mother cell end. This allows
sigma-E-directed gene expression in the mother-cell
compartment of the sporangium to trigger the activation
of sigma-G forespore-specific gene expression by a
pathway of intercellular signaling. This family of
proteins is found in bacteria, archaea and eukaryotes
and so must have a wider function that in sporulation.
Proteins in this family are typically between 174 and
223 amino acids in length.
Length = 141
Score = 28.7 bits (65), Expect = 0.25
Identities = 11/39 (28%), Positives = 18/39 (46%)
Query: 5 KAVIKNADMSEEMQQDAVDCATQALEKYNIEKDIAAYIK 43
K +I N + S E +++A D + E E I +K
Sbjct: 52 KEIIANENASAEEKKEAQDKLLELTELAEKEMAIENLLK 90
>gnl|CDD|224415 COG1498, SIK1, Protein implicated in ribosomal biogenesis, Nop56p
homolog [Translation, ribosomal structure and
biogenesis].
Length = 395
Score = 27.7 bits (62), Expect = 0.66
Identities = 11/34 (32%), Positives = 18/34 (52%)
Query: 11 ADMSEEMQQDAVDCATQALEKYNIEKDIAAYIKK 44
AD+SEE + + A LE Y + + + YI+
Sbjct: 202 ADLSEEDIDNIRELAEIILELYELREQLEEYIES 235
>gnl|CDD|216094 pfam00747, Viral_DNA_bp, ssDNA binding protein. This protein is
found in herpesviruses and is needed for replication.
Length = 1111
Score = 27.3 bits (61), Expect = 1.1
Identities = 10/42 (23%), Positives = 18/42 (42%)
Query: 4 RKAVIKNADMSEEMQQDAVDCATQALEKYNIEKDIAAYIKKE 45
R+ ++ D E + D D ++E+Y +I Y K
Sbjct: 527 RRYALEKKDDGEAAKADMQDTYRASVERYKYLLEILDYCDKN 568
>gnl|CDD|222248 pfam13592, HTH_33, Winged helix-turn helix. This
helix-turn-helix domain is often found in transferases
and is likely to be DNA-binding.
Length = 60
Score = 25.6 bits (57), Expect = 1.7
Identities = 9/18 (50%), Positives = 13/18 (72%)
Query: 36 KDIAAYIKKEFDKKYNPT 53
DIAAYI++ F Y+P+
Sbjct: 8 ADIAAYIEERFGVTYSPS 25
>gnl|CDD|178588 PLN03014, PLN03014, carbonic anhydrase.
Length = 347
Score = 26.2 bits (57), Expect = 2.2
Identities = 13/24 (54%), Positives = 17/24 (70%)
Query: 14 SEEMQQDAVDCATQALEKYNIEKD 37
SEEM +A D A +AL+K IEK+
Sbjct: 75 SEEMGTEAYDEAIEALKKLLIEKE 98
>gnl|CDD|149846 pfam08908, DUF1852, Domain of unknown function (DUF1852). This
family of proteins are functionally uncharacterized.
Length = 322
Score = 26.1 bits (58), Expect = 2.5
Identities = 11/21 (52%), Positives = 11/21 (52%)
Query: 46 FDKKYNPTWHCIVGRNFGSYV 66
D K N IVG NF SYV
Sbjct: 99 IDHKTNKRIEGIVGNNFSSYV 119
>gnl|CDD|225277 COG2414, COG2414, Aldehyde:ferredoxin oxidoreductase [Energy
production and conversion].
Length = 614
Score = 26.1 bits (58), Expect = 2.9
Identities = 13/60 (21%), Positives = 24/60 (40%), Gaps = 9/60 (15%)
Query: 25 ATQALEKYNIEKDIAAYIKK-EFDKKYNPTWHCIVGRNFG-SYVTHE--TRHFIYFYLGQ 80
+A EK + ++ A ++K E P + G+ +Y T H Y+ +G
Sbjct: 405 VKRAAEKLGLGEEFAMHVKGLEI-----PAYDPRAGKGLALAYATSPRGGDHLRYWMIGA 459
>gnl|CDD|222812 PHA00727, PHA00727, hypothetical protein.
Length = 278
Score = 25.6 bits (56), Expect = 3.9
Identities = 15/56 (26%), Positives = 26/56 (46%), Gaps = 6/56 (10%)
Query: 1 MSDRKAV------IKNADMSEEMQQDAVDCATQALEKYNIEKDIAAYIKKEFDKKY 50
MSD K V ++ A EE++Q + Q + +++ Y K+EF+ K
Sbjct: 1 MSDGKLVSAWEEELRKAQSLEELKQKYEEAQKQIADGKTLKRLYKVYEKREFELKK 56
>gnl|CDD|181082 PRK07682, PRK07682, hypothetical protein; Validated.
Length = 378
Score = 25.5 bits (56), Expect = 4.9
Identities = 10/27 (37%), Positives = 15/27 (55%)
Query: 32 YNIEKDIAAYIKKEFDKKYNPTWHCIV 58
+ ++IA Y+KK F Y+P IV
Sbjct: 60 LELRQEIAKYLKKRFAVSYDPNDEIIV 86
>gnl|CDD|233208 TIGR00956, 3a01205, Pleiotropic Drug Resistance (PDR) Family
protein. [Transport and binding proteins, Other].
Length = 1394
Score = 24.7 bits (54), Expect = 8.0
Identities = 14/62 (22%), Positives = 19/62 (30%), Gaps = 10/62 (16%)
Query: 24 CATQALEKYNIEKDIAAYIKKEFDKKYNPTWHCIVGRNFGSYVTHETRHFIYFYLGQVAI 83
C E D Y+K F + W RNFG + F F+ +
Sbjct: 639 CTVVGAEPGQDYVDGDDYLKLSFQYYNSHKW-----RNFGIIIG-----FTVFFFFVYIL 688
Query: 84 LL 85
L
Sbjct: 689 LT 690
>gnl|CDD|216677 pfam01747, ATP-sulfurylase, ATP-sulfurylase. This domain is the
catalytic domain of ATP-sulfurylase or sulfate
adenylyltransferase EC:2.7.7.4 some of which are part of
a bifunctional polypeptide chain associated with
adenosyl phosphosulphate (APS) kinase pfam01583. Both
enzymes are required for PAPS
(phosphoadenosine-phosphosulfate) synthesis from
inorganic sulphate. ATP sulfurylase catalyzes the
synthesis of adenosine-phosphosulfate APS from ATP and
inorganic sulphate.
Length = 214
Score = 24.5 bits (54), Expect = 8.4
Identities = 6/18 (33%), Positives = 9/18 (50%), Gaps = 2/18 (11%)
Query: 51 NPTWHCIVGRNFGSYVTH 68
H I+ +N+G TH
Sbjct: 102 EALLHAIIRKNYG--CTH 117
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.322 0.135 0.404
Gapped
Lambda K H
0.267 0.0743 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 4,516,976
Number of extensions: 367795
Number of successful extensions: 458
Number of sequences better than 10.0: 1
Number of HSP's gapped: 458
Number of HSP's successfully gapped: 26
Length of query: 89
Length of database: 10,937,602
Length adjustment: 57
Effective length of query: 32
Effective length of database: 8,409,424
Effective search space: 269101568
Effective search space used: 269101568
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 53 (24.2 bits)