RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy1421
         (89 letters)



>d3e2ba1 d.39.1.1 (A:3-89) Dynein light chain 1 (DLC1) {Fruit fly
          (Drosophila melanogaster) [TaxId: 7227]}
          Length = 87

 Score =  155 bits (393), Expect = 5e-52
 Identities = 87/87 (100%), Positives = 87/87 (100%)

Query: 3  DRKAVIKNADMSEEMQQDAVDCATQALEKYNIEKDIAAYIKKEFDKKYNPTWHCIVGRNF 62
          DRKAVIKNADMSEEMQQDAVDCATQALEKYNIEKDIAAYIKKEFDKKYNPTWHCIVGRNF
Sbjct: 1  DRKAVIKNADMSEEMQQDAVDCATQALEKYNIEKDIAAYIKKEFDKKYNPTWHCIVGRNF 60

Query: 63 GSYVTHETRHFIYFYLGQVAILLFKSG 89
          GSYVTHETRHFIYFYLGQVAILLFKSG
Sbjct: 61 GSYVTHETRHFIYFYLGQVAILLFKSG 87


>d2csba2 a.60.2.4 (A:294-350) Topoisomerase V {Methanopyrus
          kandleri [TaxId: 2320]}
          Length = 57

 Score = 25.8 bits (56), Expect = 0.29
 Identities = 9/26 (34%), Positives = 17/26 (65%)

Query: 22 VDCATQALEKYNIEKDIAAYIKKEFD 47
          V+CA +  ++Y I +D+A  + + FD
Sbjct: 2  VECALKLQDRYGIREDVALCLARAFD 27


>d1k99a_ a.21.1.1 (A:) Nucleolar transcription factor 1 (Upstream
          binding factor 1, UBF-1) {Human (Homo sapiens) [TaxId:
          9606]}
          Length = 91

 Score = 24.1 bits (52), Expect = 2.1
 Identities = 5/40 (12%), Positives = 18/40 (45%), Gaps = 2/40 (5%)

Query: 13 MSEEMQQDAVDCATQALEKYNIEKDIAAYIKKEFDKKYNP 52
          + E+ +   +    +  +++  E+++A + +   D   N 
Sbjct: 52 LPEKKKMKYIQDFQREKQEF--ERNLARFREDHPDLIQNA 89


>d1h3la_ a.177.1.1 (A:) Sigma factor SigR {Streptomyces coelicolor
          a3(2) [TaxId: 100226]}
          Length = 75

 Score = 22.5 bits (48), Expect = 6.3
 Identities = 5/35 (14%), Positives = 17/35 (48%)

Query: 8  IKNADMSEEMQQDAVDCATQALEKYNIEKDIAAYI 42
           +N   +E++ Q+    A  +  ++    ++ A++
Sbjct: 28 TRNPADAEDLVQETYAKAYASFHQFREGTNLKAWL 62


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.322    0.135    0.404 

Gapped
Lambda     K      H
   0.267   0.0675    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 346,241
Number of extensions: 14718
Number of successful extensions: 59
Number of sequences better than 10.0: 1
Number of HSP's gapped: 59
Number of HSP's successfully gapped: 14
Length of query: 89
Length of database: 2,407,596
Length adjustment: 53
Effective length of query: 36
Effective length of database: 1,679,906
Effective search space: 60476616
Effective search space used: 60476616
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 47 (22.0 bits)