BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy14210
(312 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q54BC8|PSB5_DICDI Proteasome subunit beta type-5 OS=Dictyostelium discoideum GN=psmB5
PE=1 SV=1
Length = 272
Score = 144 bits (364), Expect = 6e-34, Method: Compositional matrix adjust.
Identities = 81/237 (34%), Positives = 129/237 (54%), Gaps = 25/237 (10%)
Query: 79 HFLSPP-------LSQSSQHIISGDSCELLHP------VYTGGERCGPFSQSSTVPHNTS 125
HF PP L ++ H + + E H VY GG S+S+ P+ S
Sbjct: 31 HFELPPNANPGDFLRETFDHPSAPKALEFAHGTTTLAFVYGGGIIVSVDSKSTQGPYVAS 90
Query: 126 F---QVIPVSSSILCTLAGNAADCVYWLHSLAKECKGYECKYRTGMTIRHAANLLVNMVR 182
+VI ++ ++L T+AG AADC +W L + C+ YE + + +++ A+ +L N+V
Sbjct: 91 RSVKKVIEITPTLLGTMAGGAADCSFWERELGRRCRLYELRNKELISVAAASKILANIVY 150
Query: 183 KYRTGNHSSKIPNGLSFGTLMAAYDEILGPQLYMLDNTGLLIEGTKFCVGSGAEYAQAIL 242
Y+ GLS GT++ +D+ GPQLY +DN G + G +F GSG+ YA +L
Sbjct: 151 SYKG--------YGLSMGTMITGWDKT-GPQLYYVDNDGTRLHGQRFSCGSGSTYAYGVL 201
Query: 243 DTDYRPDLSEEEAYALATSAIYHACRRDIHSGGCVRLYKINGQGWQQVLSRDVKDIY 299
DT ++ D+++EEAY L A+YHA RD +SGG + +Y + GW+++ S D +Y
Sbjct: 202 DTGFKWDMNDEEAYELGRRAVYHATHRDAYSGGAINVYHVQKDGWKKISSDDCFKLY 258
Score = 34.7 bits (78), Expect = 0.85, Method: Compositional matrix adjust.
Identities = 16/40 (40%), Positives = 24/40 (60%)
Query: 2 FITGTTTLGFRYPEGIILATDSRATANDLIVSQKLNKFCQ 41
F GTTTL F Y GII++ DS++T + S+ + K +
Sbjct: 59 FAHGTTTLAFVYGGGIIVSVDSKSTQGPYVASRSVKKVIE 98
>sp|P34065|PSB5_CHICK Proteasome subunit beta type-5 (Fragment) OS=Gallus gallus GN=PSMB5
PE=2 SV=2
Length = 256
Score = 143 bits (361), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 73/186 (39%), Positives = 113/186 (60%), Gaps = 9/186 (4%)
Query: 115 SQSSTVPHNTSFQVIPVSSSILCTLAGNAADCVYWLHSLAKECKGYECKYRTGMTIRHAA 174
+ S + T +VI ++ S+L T+AG AADC +W LA++C+ YE + + +++ A+
Sbjct: 76 TAGSYIASQTVQKVIEINPSLLGTMAGGAADCSFWERLLARQCRVYELRNKEPISVAAAS 135
Query: 175 NLLVNMVRKYRTGNHSSKIPNGLSFGTLMAAYDEILGPQLYMLDNTGLLIEGTKFCVGSG 234
LL NMV +Y+ GLS GT++ +D+ GP LY +D+ G I G F VGSG
Sbjct: 136 KLLANMVYQYKG--------MGLSMGTMICGWDK-RGPGLYYVDSEGTRIPGEAFAVGSG 186
Query: 235 AEYAQAILDTDYRPDLSEEEAYALATSAIYHACRRDIHSGGCVRLYKINGQGWQQVLSRD 294
+ YA +LD RPD++ +EA LA AI+ A RRD +SGG V +Y + +GW++V S D
Sbjct: 187 SSYAYGVLDGGRRPDMATDEALELARRAIFQAARRDAYSGGSVTVYHVGPRGWRRVSSHD 246
Query: 295 VKDIYN 300
V +++
Sbjct: 247 VAGLHD 252
Score = 43.5 bits (101), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 18/40 (45%), Positives = 26/40 (65%)
Query: 2 FITGTTTLGFRYPEGIILATDSRATANDLIVSQKLNKFCQ 41
+ GTTTL F++ G+++A DSRATA I SQ + K +
Sbjct: 52 LLHGTTTLAFKFAHGVVVAVDSRATAGSYIASQTVQKVIE 91
>sp|P28075|PSB5_RAT Proteasome subunit beta type-5 OS=Rattus norvegicus GN=Psmb5 PE=1
SV=3
Length = 263
Score = 141 bits (356), Expect = 5e-33, Method: Compositional matrix adjust.
Identities = 79/197 (40%), Positives = 114/197 (57%), Gaps = 14/197 (7%)
Query: 111 CGPFSQSSTVPHNTSFQVIPVSSSILCTLAGNAADCVYWLHSLAKECKGYECKYRTGMTI 170
GP+ S TV +VI ++ +L T+AG AADC +W LA++C+ YE + + +++
Sbjct: 81 AGPYIASQTVK-----KVIEINPYLLGTMAGGAADCSFWERLLARQCRIYELRNKERISV 135
Query: 171 RHAANLLVNMVRKYRTGNHSSKIPNGLSFGTLMAAYDEILGPQLYMLDNTGLLIEGTKFC 230
A+ LL NMV +Y+ GLS GT++ +D+ GP LY +D+ G I GT F
Sbjct: 136 AAASKLLANMVYQYKG--------MGLSMGTMICGWDK-RGPGLYYVDSEGNRISGTAFS 186
Query: 231 VGSGAEYAQAILDTDYRPDLSEEEAYALATSAIYHACRRDIHSGGCVRLYKINGQGWQQV 290
VGSG+ YA ++D Y DL EEAY LA AIY A RD +SGG V LY + GW +V
Sbjct: 187 VGSGSVYAFGVMDRGYSYDLQVEEAYDLARRAIYQATYRDAYSGGAVNLYHVREDGWIRV 246
Query: 291 LSRDVKDIYNDRKEAPP 307
S +V D+++ + P
Sbjct: 247 SSDNVADLHDKYTSSIP 263
Score = 43.1 bits (100), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 19/40 (47%), Positives = 26/40 (65%)
Query: 2 FITGTTTLGFRYPEGIILATDSRATANDLIVSQKLNKFCQ 41
+ GTTTL F++ G+I+A DSRATA I SQ + K +
Sbjct: 56 MLHGTTTLAFKFQHGVIVAADSRATAGPYIASQTVKKVIE 95
>sp|O55234|PSB5_MOUSE Proteasome subunit beta type-5 OS=Mus musculus GN=Psmb5 PE=1 SV=3
Length = 264
Score = 138 bits (347), Expect = 6e-32, Method: Compositional matrix adjust.
Identities = 80/207 (38%), Positives = 117/207 (56%), Gaps = 17/207 (8%)
Query: 97 SCELLHPVYTGGER---CGPFSQSSTVPHNTSFQVIPVSSSILCTLAGNAADCVYWLHSL 153
+ + LH V + G + S TV +VI ++ +L T+AG AADC +W L
Sbjct: 64 AFKFLHGVIVAADSRATAGAYIASQTVK-----KVIEINPYLLGTMAGGAADCSFWERLL 118
Query: 154 AKECKGYECKYRTGMTIRHAANLLVNMVRKYRTGNHSSKIPNGLSFGTLMAAYDEILGPQ 213
A++C+ YE + + +++ A+ LL NMV +Y+ GLS GT++ +D+ GP
Sbjct: 119 ARQCRIYELRNKERISVAAASKLLANMVYQYKG--------MGLSMGTMICGWDK-RGPG 169
Query: 214 LYMLDNTGLLIEGTKFCVGSGAEYAQAILDTDYRPDLSEEEAYALATSAIYHACRRDIHS 273
LY +D+ G I GT F VGSG+ YA ++D Y DL EEAY LA AIY A RD +S
Sbjct: 170 LYYVDSEGNRISGTAFSVGSGSVYAYGVMDRGYSYDLKVEEAYDLARRAIYQATYRDAYS 229
Query: 274 GGCVRLYKINGQGWQQVLSRDVKDIYN 300
GG V LY + GW +V S +V D+++
Sbjct: 230 GGAVNLYHVREDGWIRVSSDNVADLHD 256
Score = 42.7 bits (99), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 19/40 (47%), Positives = 26/40 (65%)
Query: 2 FITGTTTLGFRYPEGIILATDSRATANDLIVSQKLNKFCQ 41
+ GTTTL F++ G+I+A DSRATA I SQ + K +
Sbjct: 56 MLHGTTTLAFKFLHGVIVAADSRATAGAYIASQTVKKVIE 95
>sp|Q3T112|PSB8_BOVIN Proteasome subunit beta type-8 OS=Bos taurus GN=PSMB8 PE=1 SV=2
Length = 276
Score = 136 bits (342), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 73/179 (40%), Positives = 106/179 (59%), Gaps = 9/179 (5%)
Query: 127 QVIPVSSSILCTLAGNAADCVYWLHSLAKECKGYECKYRTGMTIRHAANLLVNMVRKYRT 186
+VI ++ +L T++G AADC+YW LAKEC+ Y + +++ A+ LL NM+ +YR
Sbjct: 105 KVIEINPYLLGTMSGCAADCLYWERLLAKECRLYYLRNGERISVSAASKLLSNMMCQYRG 164
Query: 187 GNHSSKIPNGLSFGTLMAAYDEILGPQLYMLDNTGLLIEGTKFCVGSGAEYAQAILDTDY 246
GLS G+++ +D+ GP LY +D G + G F GSG +A ++D+ Y
Sbjct: 165 --------MGLSMGSMICGWDKK-GPGLYYVDENGTRLSGNMFSTGSGNSHAYGVMDSGY 215
Query: 247 RPDLSEEEAYALATSAIYHACRRDIHSGGCVRLYKINGQGWQQVLSRDVKDIYNDRKEA 305
RPDLS EEAY L AI HA RD +SGG V +Y + GW +V S DV D+ + +EA
Sbjct: 216 RPDLSIEEAYDLGRRAIVHATHRDSYSGGVVNMYHMKEDGWVKVESTDVSDLMHQYREA 274
Score = 43.5 bits (101), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 18/37 (48%), Positives = 27/37 (72%)
Query: 5 GTTTLGFRYPEGIILATDSRATANDLIVSQKLNKFCQ 41
GTTTL F++ G+I+A DSRA+A + I + K+NK +
Sbjct: 72 GTTTLAFKFQHGVIVAVDSRASAGNYIATLKVNKVIE 108
>sp|Q32KL2|PSB5_BOVIN Proteasome subunit beta type-5 OS=Bos taurus GN=PSMB5 PE=1 SV=1
Length = 263
Score = 135 bits (341), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 73/181 (40%), Positives = 107/181 (59%), Gaps = 9/181 (4%)
Query: 120 VPHNTSFQVIPVSSSILCTLAGNAADCVYWLHSLAKECKGYECKYRTGMTIRHAANLLVN 179
+ T +VI ++ +L T+AG AADC +W LA++C+ YE + + +++ A+ LL N
Sbjct: 85 IASQTVKKVIEINPYLLGTMAGGAADCSFWERLLARQCRIYELRNKERISVAAASKLLAN 144
Query: 180 MVRKYRTGNHSSKIPNGLSFGTLMAAYDEILGPQLYMLDNTGLLIEGTKFCVGSGAEYAQ 239
MV +Y+ GLS GT++ +D+ GP LY +D+ G I G F VGSG+ YA
Sbjct: 145 MVYQYKG--------MGLSMGTMICGWDK-RGPGLYYVDSEGNRISGATFSVGSGSVYAY 195
Query: 240 AILDTDYRPDLSEEEAYALATSAIYHACRRDIHSGGCVRLYKINGQGWQQVLSRDVKDIY 299
++D Y DL EEAY LA AIY A RD +SGG V LY + GW +V S +V D++
Sbjct: 196 GVMDRGYSYDLEVEEAYDLARRAIYQATYRDAYSGGSVSLYHVREDGWIRVSSDNVADLH 255
Query: 300 N 300
+
Sbjct: 256 D 256
Score = 43.1 bits (100), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 19/40 (47%), Positives = 26/40 (65%)
Query: 2 FITGTTTLGFRYPEGIILATDSRATANDLIVSQKLNKFCQ 41
+ GTTTL F++ G+I+A DSRATA I SQ + K +
Sbjct: 56 ILHGTTTLAFKFRHGVIVAADSRATAGAYIASQTVKKVIE 95
>sp|Q5R8S2|PSB5_PONAB Proteasome subunit beta type-5 OS=Pongo abelii GN=PSMB5 PE=2 SV=3
Length = 263
Score = 135 bits (339), Expect = 6e-31, Method: Compositional matrix adjust.
Identities = 73/188 (38%), Positives = 108/188 (57%), Gaps = 9/188 (4%)
Query: 120 VPHNTSFQVIPVSSSILCTLAGNAADCVYWLHSLAKECKGYECKYRTGMTIRHAANLLVN 179
+ T +VI ++ +L T+AG AADC +W LA++C+ YE + + +++ A+ LL N
Sbjct: 85 IASQTVKKVIEINPYLLGTMAGGAADCSFWERLLARQCRIYELRNKERISVAAASKLLAN 144
Query: 180 MVRKYRTGNHSSKIPNGLSFGTLMAAYDEILGPQLYMLDNTGLLIEGTKFCVGSGAEYAQ 239
MV +Y+ GLS GT++ +D+ GP LY +D+ G I G F VGSG+ YA
Sbjct: 145 MVYQYKG--------MGLSMGTMICGWDK-RGPGLYYVDSEGNRISGATFSVGSGSVYAY 195
Query: 240 AILDTDYRPDLSEEEAYALATSAIYHACRRDIHSGGCVRLYKINGQGWQQVLSRDVKDIY 299
++D Y DL E+AY LA AIY A RD +SGG V LY + GW +V S +V D++
Sbjct: 196 GVMDRGYSYDLEVEQAYDLARRAIYQATYRDAYSGGAVNLYHVREDGWIRVSSDNVADLH 255
Query: 300 NDRKEAPP 307
+ P
Sbjct: 256 EKYSGSTP 263
Score = 42.7 bits (99), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 19/40 (47%), Positives = 26/40 (65%)
Query: 2 FITGTTTLGFRYPEGIILATDSRATANDLIVSQKLNKFCQ 41
+ GTTTL F++ G+I+A DSRATA I SQ + K +
Sbjct: 56 MLHGTTTLAFKFRHGVIVAADSRATAGAYIASQTVKKVIE 95
>sp|P28074|PSB5_HUMAN Proteasome subunit beta type-5 OS=Homo sapiens GN=PSMB5 PE=1 SV=3
Length = 263
Score = 135 bits (339), Expect = 6e-31, Method: Compositional matrix adjust.
Identities = 73/188 (38%), Positives = 108/188 (57%), Gaps = 9/188 (4%)
Query: 120 VPHNTSFQVIPVSSSILCTLAGNAADCVYWLHSLAKECKGYECKYRTGMTIRHAANLLVN 179
+ T +VI ++ +L T+AG AADC +W LA++C+ YE + + +++ A+ LL N
Sbjct: 85 IASQTVKKVIEINPYLLGTMAGGAADCSFWERLLARQCRIYELRNKERISVAAASKLLAN 144
Query: 180 MVRKYRTGNHSSKIPNGLSFGTLMAAYDEILGPQLYMLDNTGLLIEGTKFCVGSGAEYAQ 239
MV +Y+ GLS GT++ +D+ GP LY +D+ G I G F VGSG+ YA
Sbjct: 145 MVYQYKG--------MGLSMGTMICGWDK-RGPGLYYVDSEGNRISGATFSVGSGSVYAY 195
Query: 240 AILDTDYRPDLSEEEAYALATSAIYHACRRDIHSGGCVRLYKINGQGWQQVLSRDVKDIY 299
++D Y DL E+AY LA AIY A RD +SGG V LY + GW +V S +V D++
Sbjct: 196 GVMDRGYSYDLEVEQAYDLARRAIYQATYRDAYSGGAVNLYHVREDGWIRVSSDNVADLH 255
Query: 300 NDRKEAPP 307
+ P
Sbjct: 256 EKYSGSTP 263
Score = 42.7 bits (99), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 19/40 (47%), Positives = 26/40 (65%)
Query: 2 FITGTTTLGFRYPEGIILATDSRATANDLIVSQKLNKFCQ 41
+ GTTTL F++ G+I+A DSRATA I SQ + K +
Sbjct: 56 MLHGTTTLAFKFRHGVIVAADSRATAGAYIASQTVKKVIE 95
>sp|P28064|PSB8_RAT Proteasome subunit beta type-8 OS=Rattus norvegicus GN=Psmb8 PE=1
SV=3
Length = 276
Score = 134 bits (337), Expect = 8e-31, Method: Compositional matrix adjust.
Identities = 73/179 (40%), Positives = 106/179 (59%), Gaps = 9/179 (5%)
Query: 127 QVIPVSSSILCTLAGNAADCVYWLHSLAKECKGYECKYRTGMTIRHAANLLVNMVRKYRT 186
+VI ++ +L T++G AADC YW LAKEC+ Y + +++ A+ LL NM+ +YR
Sbjct: 105 KVIEINPYLLGTMSGCAADCQYWERLLAKECRLYYLRNGERISVSAASKLLSNMMLQYRG 164
Query: 187 GNHSSKIPNGLSFGTLMAAYDEILGPQLYMLDNTGLLIEGTKFCVGSGAEYAQAILDTDY 246
GLS G+++ +D+ GP LY +D+ G + G F GSG YA ++D+ Y
Sbjct: 165 --------MGLSMGSMICGWDKK-GPGLYYVDDNGTRLSGQMFSTGSGNTYAYGVMDSGY 215
Query: 247 RPDLSEEEAYALATSAIYHACRRDIHSGGCVRLYKINGQGWQQVLSRDVKDIYNDRKEA 305
R DLS EEAY LA AI +A RD +SGG V +Y + GW +V S DV D+ + +EA
Sbjct: 216 RQDLSPEEAYDLARRAIVYATHRDSYSGGVVNMYHMKKDGWVKVESTDVSDLLHKYREA 274
Score = 41.6 bits (96), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 17/37 (45%), Positives = 26/37 (70%)
Query: 5 GTTTLGFRYPEGIILATDSRATANDLIVSQKLNKFCQ 41
GTTTL F++ G+I+A DSRA+A I + ++NK +
Sbjct: 72 GTTTLAFKFQHGVIVAVDSRASAGSYIATIRVNKVIE 108
>sp|Q9LIP2|PSB5B_ARATH Proteasome subunit beta type-5-B OS=Arabidopsis thaliana GN=PBE2
PE=1 SV=1
Length = 273
Score = 132 bits (332), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 68/173 (39%), Positives = 105/173 (60%), Gaps = 9/173 (5%)
Query: 127 QVIPVSSSILCTLAGNAADCVYWLHSLAKECKGYECKYRTGMTIRHAANLLVNMVRKYRT 186
++I ++ +L T+AG AADC +W +L +C+ +E + +++ A+ LL NM+ YR
Sbjct: 90 KIIEINPYMLGTMAGGAADCQFWHRNLGIKCRLHELANKRRISVSGASKLLANMLYSYRG 149
Query: 187 GNHSSKIPNGLSFGTLMAAYDEILGPQLYMLDNTGLLIEGTKFCVGSGAEYAQAILDTDY 246
GLS GT++A +DE GP LY +DN G ++G +F VGSG+ YA +LD+ Y
Sbjct: 150 --------MGLSVGTMIAGWDET-GPGLYYVDNEGGRLKGDRFSVGSGSPYAYGVLDSGY 200
Query: 247 RPDLSEEEAYALATSAIYHACRRDIHSGGCVRLYKINGQGWQQVLSRDVKDIY 299
+ D+S EEA LA +IYHA RD SGG +Y + QGW ++ DV +++
Sbjct: 201 KFDMSVEEASELARRSIYHATFRDGASGGVASVYHVGPQGWTKLSGDDVGELH 253
Score = 38.9 bits (89), Expect = 0.043, Method: Compositional matrix adjust.
Identities = 17/37 (45%), Positives = 24/37 (64%)
Query: 5 GTTTLGFRYPEGIILATDSRATANDLIVSQKLNKFCQ 41
GTTTL F + EG+++A DSRA+ I SQ + K +
Sbjct: 57 GTTTLAFIFKEGVMVAADSRASMGGYISSQSVKKIIE 93
>sp|P28062|PSB8_HUMAN Proteasome subunit beta type-8 OS=Homo sapiens GN=PSMB8 PE=1 SV=3
Length = 276
Score = 132 bits (332), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 72/179 (40%), Positives = 105/179 (58%), Gaps = 9/179 (5%)
Query: 127 QVIPVSSSILCTLAGNAADCVYWLHSLAKECKGYECKYRTGMTIRHAANLLVNMVRKYRT 186
+VI ++ +L T++G AADC YW LAKEC+ Y + +++ A+ LL NM+ +YR
Sbjct: 105 KVIEINPYLLGTMSGCAADCQYWERLLAKECRLYYLRNGERISVSAASKLLSNMMCQYRG 164
Query: 187 GNHSSKIPNGLSFGTLMAAYDEILGPQLYMLDNTGLLIEGTKFCVGSGAEYAQAILDTDY 246
GLS G+++ +D+ GP LY +D G + G F GSG YA ++D+ Y
Sbjct: 165 --------MGLSMGSMICGWDKK-GPGLYYVDEHGTRLSGNMFSTGSGNTYAYGVMDSGY 215
Query: 247 RPDLSEEEAYALATSAIYHACRRDIHSGGCVRLYKINGQGWQQVLSRDVKDIYNDRKEA 305
RP+LS EEAY L AI +A RD +SGG V +Y + GW +V S DV D+ + +EA
Sbjct: 216 RPNLSPEEAYDLGRRAIAYATHRDSYSGGVVNMYHMKEDGWVKVESTDVSDLLHQYREA 274
Score = 40.0 bits (92), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 17/37 (45%), Positives = 25/37 (67%)
Query: 5 GTTTLGFRYPEGIILATDSRATANDLIVSQKLNKFCQ 41
GTTTL F++ G+I A DSRA+A I + ++NK +
Sbjct: 72 GTTTLAFKFQHGVIAAVDSRASAGSYISALRVNKVIE 108
>sp|O24361|PSB5_SPIOL Proteasome subunit beta type-5 OS=Spinacia oleracea PE=2 SV=1
Length = 272
Score = 132 bits (331), Expect = 4e-30, Method: Compositional matrix adjust.
Identities = 68/173 (39%), Positives = 105/173 (60%), Gaps = 9/173 (5%)
Query: 127 QVIPVSSSILCTLAGNAADCVYWLHSLAKECKGYECKYRTGMTIRHAANLLVNMVRKYRT 186
++I ++ +L T+AG AADC +W +L +C+ +E + +++ A+ LL N++ YR
Sbjct: 88 KIIEINPYMLGTMAGGAADCQFWHRNLGIKCRLHELANKRRISVTGASKLLANILYNYRG 147
Query: 187 GNHSSKIPNGLSFGTLMAAYDEILGPQLYMLDNTGLLIEGTKFCVGSGAEYAQAILDTDY 246
GLS GT++A +DE GP LY +D+ G ++G +F VGSG+ YA +LD Y
Sbjct: 148 --------MGLSVGTMIAGWDET-GPGLYYVDSEGGRLKGMRFSVGSGSPYAYGVLDNGY 198
Query: 247 RPDLSEEEAYALATSAIYHACRRDIHSGGCVRLYKINGQGWQQVLSRDVKDIY 299
+ D++ EEA LA AIYHA RD SGG V +Y + GW++V DV D++
Sbjct: 199 KYDMTVEEASELARRAIYHATYRDGASGGVVSVYHVGPDGWKKVTGDDVGDLH 251
Score = 36.6 bits (83), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 16/37 (43%), Positives = 23/37 (62%)
Query: 5 GTTTLGFRYPEGIILATDSRATANDLIVSQKLNKFCQ 41
GTTTL F + G+++A DSRA+ I SQ + K +
Sbjct: 55 GTTTLAFIFKHGVMVAADSRASMGGYISSQSVKKIIE 91
>sp|Q5W416|PSB8_CANFA Proteasome subunit beta type-8 OS=Canis familiaris GN=PSMB8 PE=1
SV=1
Length = 276
Score = 132 bits (331), Expect = 5e-30, Method: Compositional matrix adjust.
Identities = 70/179 (39%), Positives = 106/179 (59%), Gaps = 9/179 (5%)
Query: 127 QVIPVSSSILCTLAGNAADCVYWLHSLAKECKGYECKYRTGMTIRHAANLLVNMVRKYRT 186
+VI ++ S+L T++G AADC YW LAKEC+ Y + +++ A+ LL NMV +YR
Sbjct: 105 KVIEINPSLLGTMSGCAADCQYWERLLAKECRLYYLRNGERISVSAASKLLSNMVYQYRG 164
Query: 187 GNHSSKIPNGLSFGTLMAAYDEILGPQLYMLDNTGLLIEGTKFCVGSGAEYAQAILDTDY 246
+ LS G+++ +D+ GP LY +D G + G F GSG+ YA ++D+ Y
Sbjct: 165 MD--------LSMGSMICGWDKK-GPGLYYVDQNGTRLSGNMFSTGSGSTYAYGVMDSGY 215
Query: 247 RPDLSEEEAYALATSAIYHACRRDIHSGGCVRLYKINGQGWQQVLSRDVKDIYNDRKEA 305
+P LS EEAY L AI +A RD +SGG + +Y + GW +V S DV ++ + +EA
Sbjct: 216 QPSLSPEEAYELGRRAITYATHRDSYSGGIINMYHMKEDGWVKVESTDVNELLHQYQEA 274
Score = 45.4 bits (106), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 19/40 (47%), Positives = 28/40 (70%)
Query: 2 FITGTTTLGFRYPEGIILATDSRATANDLIVSQKLNKFCQ 41
+ GTTTL F++ G+I+A DSRATA + I S ++NK +
Sbjct: 69 MVHGTTTLAFKFQHGVIVAVDSRATAGNYISSSRVNKVIE 108
>sp|O23717|PSB5A_ARATH Proteasome subunit beta type-5-A OS=Arabidopsis thaliana GN=PBE1
PE=1 SV=1
Length = 274
Score = 131 bits (330), Expect = 5e-30, Method: Compositional matrix adjust.
Identities = 71/199 (35%), Positives = 115/199 (57%), Gaps = 12/199 (6%)
Query: 104 VYTGGERCGPFSQSST---VPHNTSFQVIPVSSSILCTLAGNAADCVYWLHSLAKECKGY 160
++ GG S++S + + ++I ++ +L T+AG AADC +W +L +C+ +
Sbjct: 64 IFKGGVMVAADSRASMGGYISSQSVKKIIEINPYMLGTMAGGAADCQFWHRNLGIKCRLH 123
Query: 161 ECKYRTGMTIRHAANLLVNMVRKYRTGNHSSKIPNGLSFGTLMAAYDEILGPQLYMLDNT 220
E + +++ A+ LL NM+ YR GLS GT++A +DE GP LY +DN
Sbjct: 124 ELANKRRISVSGASKLLANMLYSYRG--------MGLSVGTMIAGWDET-GPGLYYVDNE 174
Query: 221 GLLIEGTKFCVGSGAEYAQAILDTDYRPDLSEEEAYALATSAIYHACRRDIHSGGCVRLY 280
G ++G +F VGSG+ YA +LD+ Y+ D+S EEA LA +IYHA RD SGG +Y
Sbjct: 175 GGRLKGDRFSVGSGSPYAYGVLDSGYKYDMSVEEASELARRSIYHATFRDGASGGVASVY 234
Query: 281 KINGQGWQQVLSRDVKDIY 299
+ +GW ++ DV +++
Sbjct: 235 HVGPEGWTKLSGDDVGELH 253
Score = 36.2 bits (82), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 16/37 (43%), Positives = 23/37 (62%)
Query: 5 GTTTLGFRYPEGIILATDSRATANDLIVSQKLNKFCQ 41
GTTTL F + G+++A DSRA+ I SQ + K +
Sbjct: 57 GTTTLAFIFKGGVMVAADSRASMGGYISSQSVKKIIE 93
>sp|P28063|PSB8_MOUSE Proteasome subunit beta type-8 OS=Mus musculus GN=Psmb8 PE=1 SV=2
Length = 276
Score = 129 bits (325), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 72/179 (40%), Positives = 103/179 (57%), Gaps = 9/179 (5%)
Query: 127 QVIPVSSSILCTLAGNAADCVYWLHSLAKECKGYECKYRTGMTIRHAANLLVNMVRKYRT 186
+VI ++ +L T++G AADC YW LAKEC+ Y + +++ A+ LL NM+ +YR
Sbjct: 105 KVIEINPYLLGTMSGCAADCQYWERLLAKECRLYYLRNGERISVSAASKLLSNMMLQYRG 164
Query: 187 GNHSSKIPNGLSFGTLMAAYDEILGPQLYMLDNTGLLIEGTKFCVGSGAEYAQAILDTDY 246
GLS G+++ +D+ GP LY +D+ G + G F GSG YA ++D+ Y
Sbjct: 165 --------MGLSMGSMICGWDKK-GPGLYYVDDNGTRLSGQMFSTGSGNTYAYGVMDSGY 215
Query: 247 RPDLSEEEAYALATSAIYHACRRDIHSGGCVRLYKINGQGWQQVLSRDVKDIYNDRKEA 305
R DLS EEAY L AI +A RD +SGG V +Y + GW +V S DV D+ EA
Sbjct: 216 RQDLSPEEAYDLGRRAIAYATHRDNYSGGVVNMYHMKEDGWVKVESSDVSDLLYKYGEA 274
Score = 43.9 bits (102), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 19/37 (51%), Positives = 26/37 (70%)
Query: 5 GTTTLGFRYPEGIILATDSRATANDLIVSQKLNKFCQ 41
GTTTL F++ G+I+A DSRATA I S ++NK +
Sbjct: 72 GTTTLAFKFQHGVIVAVDSRATAGSYISSLRMNKVIE 108
>sp|P30656|PSB5_YEAST Proteasome subunit beta type-5 OS=Saccharomyces cerevisiae (strain
ATCC 204508 / S288c) GN=PRE2 PE=1 SV=3
Length = 287
Score = 123 bits (308), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 65/185 (35%), Positives = 104/185 (56%), Gaps = 8/185 (4%)
Query: 120 VPHNTSFQVIPVSSSILCTLAGNAADCVYWLHSLAKECKGYECKYRTGMTIRHAANLLVN 179
V T +VI ++ +L T+AG AADC +W L +C+ +E + + +++ A+ +L N
Sbjct: 101 VASQTVKKVIEINPFLLGTMAGGAADCQFWETWLGSQCRLHELREKERISVAAASKILSN 160
Query: 180 MVRKYRTGNHSSKIPNGLSFGTLMAAYDEILGPQLYMLDNTGLLIEGTKFCVGSGAEYAQ 239
+V +Y+ GLS GT++ Y GP +Y +D+ G ++G FCVGSG +A
Sbjct: 161 LVYQYKGA--------GLSMGTMICGYTRKEGPTIYYVDSDGTRLKGDIFCVGSGQTFAY 212
Query: 240 AILDTDYRPDLSEEEAYALATSAIYHACRRDIHSGGCVRLYKINGQGWQQVLSRDVKDIY 299
+LD++Y+ DLS E+A L +I A RD +SGG V LY + GW + DV +++
Sbjct: 213 GVLDSNYKWDLSVEDALYLGKRSILAAAHRDAYSGGSVNLYHVTEDGWIYHGNHDVGELF 272
Query: 300 NDRKE 304
KE
Sbjct: 273 WKVKE 277
Score = 45.1 bits (105), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 20/37 (54%), Positives = 26/37 (70%)
Query: 5 GTTTLGFRYPEGIILATDSRATANDLIVSQKLNKFCQ 41
GTTTL FR+ GII+A DSRATA + + SQ + K +
Sbjct: 75 GTTTLAFRFQGGIIVAVDSRATAGNWVASQTVKKVIE 111
>sp|P30655|PSB5_SCHPO Probable proteasome subunit beta type-5 OS=Schizosaccharomyces
pombe (strain 972 / ATCC 24843) GN=pts1 PE=3 SV=3
Length = 272
Score = 113 bits (283), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 66/177 (37%), Positives = 99/177 (55%), Gaps = 14/177 (7%)
Query: 111 CGPFSQSSTVPHNTSFQVIPVSSSILCTLAGNAADCVYWLHSLAKECKGYECKYRTGMTI 170
GP S TV +VI ++ +L TLAG AADC +W L EC+ ++ + + +++
Sbjct: 83 AGPLIASQTVK-----KVIEINPYLLGTLAGGAADCQFWETVLGMECRLHQLRNKELISV 137
Query: 171 RHAANLLVNMVRKYRTGNHSSKIPNGLSFGTLMAAYDEILGPQLYMLDNTGLLIEGTKFC 230
A+ +L N+ Y+ GLS GT++A + G LY +D+ G ++G F
Sbjct: 138 SAASKILSNITYSYK--------GYGLSMGTMLAGTGK-GGTALYYIDSDGTRLKGDLFS 188
Query: 231 VGSGAEYAQAILDTDYRPDLSEEEAYALATSAIYHACRRDIHSGGCVRLYKINGQGW 287
VGSG+ +A +LD+ YR DLS++EA LA +I A RD +SGG V LY I+ GW
Sbjct: 189 VGSGSTFAYGVLDSGYRWDLSKQEALYLAQRSIVAATHRDAYSGGSVNLYHIDENGW 245
Score = 43.9 bits (102), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 20/37 (54%), Positives = 25/37 (67%)
Query: 5 GTTTLGFRYPEGIILATDSRATANDLIVSQKLNKFCQ 41
GTTTL FRY GI++ DSRA+A LI SQ + K +
Sbjct: 61 GTTTLAFRYQHGIVVCVDSRASAGPLIASQTVKKVIE 97
>sp|A5LHX3|PSB11_HUMAN Proteasome subunit beta type-11 OS=Homo sapiens GN=PSMB11 PE=2 SV=1
Length = 300
Score = 103 bits (256), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 64/180 (35%), Positives = 97/180 (53%), Gaps = 9/180 (5%)
Query: 125 SFQVIPVSSSILCTLAGNAADCVYWLHSLAKECKGYECKYRTGMTIRHAANLLVNMVRKY 184
S +VIPV +L T +G +ADC W L +E + E + ++ AA LL M+ +Y
Sbjct: 80 SCKVIPVHQHLLGTTSGTSADCATWYRVLQRELRLRELREGQLPSVASAAKLLSAMMSQY 139
Query: 185 RTGNHSSKIPNGLSFGTLMAAYDEILGPQLYMLDNTGLLIEGTKFCVGSGAEYAQAILDT 244
R + L T + +D GP+L+ + + G ++G F VGSG+ YA +LD
Sbjct: 140 RGLD--------LCVATALCGWDRS-GPELFYVYSDGTRLQGDIFSVGSGSPYAYGVLDR 190
Query: 245 DYRPDLSEEEAYALATSAIYHACRRDIHSGGCVRLYKINGQGWQQVLSRDVKDIYNDRKE 304
YR D+S +EAYALA A+ HA RD +SGG V L+ + GW+ V D +Y + ++
Sbjct: 191 GYRYDMSTQEAYALARCAVAHATHRDAYSGGSVDLFHVRESGWEHVSRSDACVLYVELQK 250
>sp|Q8BG41|PSB11_MOUSE Proteasome subunit beta type-11 OS=Mus musculus GN=Psmb11 PE=1 SV=1
Length = 302
Score = 92.0 bits (227), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 63/188 (33%), Positives = 95/188 (50%), Gaps = 9/188 (4%)
Query: 118 STVPHNTSFQVIPVSSSILCTLAGNAADCVYWLHSLAKECKGYECKYRTGMTIRHAANLL 177
S V S +VIPV +L T +G +ADC W L +E + E + ++ A LL
Sbjct: 73 SYVACPASRKVIPVHQRLLGTTSGTSADCATWYRVLRRELRLRELREGQLPSVAGTAKLL 132
Query: 178 VNMVRKYRTGNHSSKIPNGLSFGTLMAAYDEILGPQLYMLDNTGLLIEGTKFCVGSGAEY 237
M+ YR + L T + +D GP L+ + + G ++G F VGSG+ Y
Sbjct: 133 AAMMSCYRGLD--------LCVATALCGWDHS-GPALFYVYSDGTCLQGDIFSVGSGSPY 183
Query: 238 AQAILDTDYRPDLSEEEAYALATSAIYHACRRDIHSGGCVRLYKINGQGWQQVLSRDVKD 297
A +LD Y D++ +EAY LA A+ HA RD +SGG V L+ + GW+ V D
Sbjct: 184 AYGVLDRGYHYDMTIQEAYTLARCAVAHATHRDAYSGGSVDLFHVRESGWEYVSRSDACV 243
Query: 298 IYNDRKEA 305
+Y + ++A
Sbjct: 244 LYRELQKA 251
Score = 32.0 bits (71), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 17/46 (36%), Positives = 26/46 (56%), Gaps = 3/46 (6%)
Query: 5 GTTTLGFRYPEGIILATDSRATANDLI---VSQKLNKFCQSSLGDS 47
GTTTL FR+ G+I A D+R++ + S+K+ Q LG +
Sbjct: 49 GTTTLAFRFRHGVIAAADTRSSCGSYVACPASRKVIPVHQRLLGTT 94
>sp|A3DN21|PSB1_STAMF Proteasome subunit beta 1 OS=Staphylothermus marinus (strain ATCC
43588 / DSM 3639 / F1) GN=psmB1 PE=3 SV=1
Length = 213
Score = 80.5 bits (197), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 49/161 (30%), Positives = 80/161 (49%), Gaps = 9/161 (5%)
Query: 127 QVIPVSSSILCTLAGNAADCVYWLHSLAKECKGYECKYRTGMTIRHAANLLVNMVRKYRT 186
+V P++ + AG D + + +L E + YE + + +R A +L ++ Y+
Sbjct: 50 KVHPITKHVGIGFAGLVGDAQFIIRALRMEAENYELQLGREIRVRGLAKILSLILYSYKL 109
Query: 187 GNHSSKIPNGLSFGTLMAAYDEILGPQLYMLDNTGLLIEGTKFCVGSGAEYAQAILDTDY 246
+++ G +DE GPQ+Y+LD G LIE +GSG A I++ +Y
Sbjct: 110 APLMTEVVVG--------GFDE-KGPQIYVLDPVGSLIEDKYVALGSGGPIALGIIEKEY 160
Query: 247 RPDLSEEEAYALATSAIYHACRRDIHSGGCVRLYKINGQGW 287
R D+ +EA LA SAI A RD SG V + +I +G+
Sbjct: 161 REDIDVDEAEKLAVSAIREAIERDAVSGDGVDVLRITEEGY 201
>sp|Q9V0N9|PSB2_PYRAB Proteasome subunit beta 2 OS=Pyrococcus abyssi (strain GE5 / Orsay)
GN=psmB2 PE=3 SV=1
Length = 207
Score = 77.8 bits (190), Expect = 9e-14, Method: Compositional matrix adjust.
Identities = 49/159 (30%), Positives = 81/159 (50%), Gaps = 10/159 (6%)
Query: 140 AGNAADCVYWLHSLAKECKGYECKYRTGMTIRHAANLLVNMVRKYRTGNHSSKIPNGLSF 199
AG+ D + + L E K Y + M+++ A LL NM+ N + +P F
Sbjct: 56 AGDVGDILNLVRLLRAEAKLYYAQSGKRMSVKALATLLANML------NGARMLPYLAWF 109
Query: 200 GTLMAAYDEILGPQLYMLDNTGLLIEGTKFCVGSGAEYAQAILDTDYRPDLSEEEAYALA 259
L+ +DE P+LY +D G + E GSG E+A ++LD++YR DL E +A
Sbjct: 110 --LVGGFDE--KPRLYSVDMMGGITEDKYVAAGSGMEFAYSVLDSEYREDLKVREGIKIA 165
Query: 260 TSAIYHACRRDIHSGGCVRLYKINGQGWQQVLSRDVKDI 298
AI A +RD+ SG + + I +G++++ + +K I
Sbjct: 166 VEAINSAIKRDVFSGDGIMVVTITEEGYRELSNSRLKAI 204
>sp|O50110|PSB2_PYRHO Proteasome subunit beta 2 OS=Pyrococcus horikoshii (strain ATCC
700860 / DSM 12428 / JCM 9974 / NBRC 100139 / OT-3)
GN=psmB2 PE=3 SV=1
Length = 207
Score = 75.1 bits (183), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 48/151 (31%), Positives = 78/151 (51%), Gaps = 10/151 (6%)
Query: 140 AGNAADCVYWLHSLAKECKGYECKYRTGMTIRHAANLLVNMVRKYRTGNHSSKIPNGLSF 199
AG+ D + + L E K Y + M+++ A LL N++ N + P F
Sbjct: 56 AGDVGDILNLVRLLRAEAKLYYSQSGKRMSVKALATLLANIM------NGAKYFPYLAWF 109
Query: 200 GTLMAAYDEILGPQLYMLDNTGLLIEGTKFCVGSGAEYAQAILDTDYRPDLSEEEAYALA 259
L+ YDE P+LY +D G + E GSG E+A +ILD++Y+ +L+ EE LA
Sbjct: 110 --LVGGYDE--KPKLYSVDMVGGITEDKYATAGSGMEFAYSILDSEYKDNLTLEEGIKLA 165
Query: 260 TSAIYHACRRDIHSGGCVRLYKINGQGWQQV 290
AI A +RD+ SG + + I +G++++
Sbjct: 166 VKAINTAIKRDVFSGDGILVVTITKEGYKEL 196
Score = 31.6 bits (70), Expect = 7.3, Method: Compositional matrix adjust.
Identities = 20/70 (28%), Positives = 34/70 (48%), Gaps = 7/70 (10%)
Query: 5 GTTTLGFRYPEGIILATDSRATANDLIVSQKLNK-------FCQSSLGDSCELLHPVYTG 57
GTTT+G +G++LA D RA+ ++I ++ + K + GD ++L+ V
Sbjct: 10 GTTTVGIVCKDGVVLAADRRASLGNIIYARNVTKIHKIDEHLAIAGAGDVGDILNLVRLL 69
Query: 58 GERCGQSYSQ 67
YSQ
Sbjct: 70 RAEAKLYYSQ 79
>sp|B1YDJ0|PSB2_PYRNV Proteasome subunit beta 2 OS=Pyrobaculum neutrophilum (strain DSM
2338 / JCM 9278 / V24Sta) GN=psmB2 PE=3 SV=1
Length = 203
Score = 73.9 bits (180), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 50/163 (30%), Positives = 79/163 (48%), Gaps = 9/163 (5%)
Query: 127 QVIPVSSSILCTLAGNAADCVYWLHSLAKECKGYECKYRTGMTIRHAANLLVNMVRKYRT 186
+V V+ + AG AD L + YE + + T++ A LL ++ R
Sbjct: 41 KVFIVNDKLAIASAGIIADMQALAKILKLNARSYELEVKKKPTVKAMAKLLSVVMFSRRF 100
Query: 187 GNHSSKIPNGLSFGTLMAAYDEILGPQLYMLDNTGLLIEGTKFCVGSGAEYAQAILDTDY 246
+++ L+ DE GP L ++D G LIE +G+GA+ A ++LD Y
Sbjct: 101 MPFYAEV--------LVGGVDE-EGPHLIVMDPLGSLIEDNYAALGTGAKLAVSLLDASY 151
Query: 247 RPDLSEEEAYALATSAIYHACRRDIHSGGCVRLYKINGQGWQQ 289
RPD++ EEA LA A+ A RD SGG + L ++G G ++
Sbjct: 152 RPDMTVEEAKKLAVQAVKAAIERDPVSGGGIDLVVVDGGGARE 194
>sp|B8D673|PSB1_DESK1 Proteasome subunit beta 1 OS=Desulfurococcus kamchatkensis (strain
1221n / DSM 18924) GN=psmB1 PE=3 SV=1
Length = 202
Score = 73.9 bits (180), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 48/158 (30%), Positives = 76/158 (48%), Gaps = 9/158 (5%)
Query: 131 VSSSILCTLAGNAADCVYWLHSLAKECKGYECKYRTGMTIRHAANLLVNMVRKYRTGNHS 190
+++ I AG D + + L E K YE ++ + R A LL ++ Y+
Sbjct: 44 ITNHIGVGFAGLMGDVNFLVKVLRLEAKNYELQHGREIKTRSLAKLLSVILYSYKLAPML 103
Query: 191 SKIPNGLSFGTLMAAYDEILGPQLYMLDNTGLLIEGTKFCVGSGAEYAQAILDTDYRPDL 250
+++ ++ YDE GP LY+LD G +IE VGSGA+ A ++ Y P L
Sbjct: 104 TEV--------VVGGYDE-EGPSLYILDPVGSVIEEKYVAVGSGAQLALGYIEPRYNPGL 154
Query: 251 SEEEAYALATSAIYHACRRDIHSGGCVRLYKINGQGWQ 288
+EA LA +A+ RD+ SG + L I+ G+Q
Sbjct: 155 GLKEAEELAVNAVKTVIERDVLSGDGIDLVVIDKNGYQ 192
>sp|A1RSJ8|PSB1_PYRIL Proteasome subunit beta 1 OS=Pyrobaculum islandicum (strain DSM
4184 / JCM 9189) GN=psmB1 PE=3 SV=1
Length = 203
Score = 72.4 bits (176), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 51/163 (31%), Positives = 77/163 (47%), Gaps = 9/163 (5%)
Query: 127 QVIPVSSSILCTLAGNAADCVYWLHSLAKECKGYECKYRTGMTIRHAANLLVNMVRKYRT 186
+V ++ + AG AD L YE + R T+R A LL ++ R
Sbjct: 41 KVFIINDKLAIASAGIIADMQTLARILKLNVMSYELEVRKKPTVRAMAKLLSIIMFSRRL 100
Query: 187 GNHSSKIPNGLSFGTLMAAYDEILGPQLYMLDNTGLLIEGTKFCVGSGAEYAQAILDTDY 246
+++ L+ DE GP L ++D G LIE +G+GA+ A ++LD Y
Sbjct: 101 LPFYAEV--------LVGGVDE-EGPHLIVMDPLGSLIEDNYAALGTGAKLAVSLLDATY 151
Query: 247 RPDLSEEEAYALATSAIYHACRRDIHSGGCVRLYKINGQGWQQ 289
RPD+S +EA LA AI A RD SGG + L ++ G ++
Sbjct: 152 RPDISLQEAKKLAVQAIKAAIERDPVSGGGIDLAVVDNNGARE 194
>sp|A8AB58|PSB2_IGNH4 Proteasome subunit beta 2 OS=Ignicoccus hospitalis (strain KIN4/I /
DSM 18386 / JCM 14125) GN=psmB2 PE=3 SV=1
Length = 212
Score = 72.0 bits (175), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 48/168 (28%), Positives = 80/168 (47%), Gaps = 12/168 (7%)
Query: 120 VPHNTSFQVIPVSSSILCTLAGNAADCVYWLHSLAKECKGYECKYRTGMTIRHAANLLVN 179
+ H +++ +S + T AG AD L E K YE ++ M+++ AA L N
Sbjct: 39 IVHKRVEKIVKISDYMAMTTAGLVADAQVLADVLRMEVKNYELFHKKRMSVKAAATFLSN 98
Query: 180 MVRKYRTGNHSSKI-PNGLSFGTLMAAYDEILGPQLYMLDNTGLLIEGTKFCVGSGAEYA 238
++ HS++ P + L+ +D P+LY LD G + E GSG+ A
Sbjct: 99 VL-------HSARFYPYIVQL--LVGGFDT--APRLYSLDWFGTVAEEEFLVTGSGSPMA 147
Query: 239 QAILDTDYRPDLSEEEAYALATSAIYHACRRDIHSGGCVRLYKINGQG 286
+++ +Y P++ EE LA A++ A RRD SG + + I+ G
Sbjct: 148 VGVIEAEYNPNMDLEELVNLAVRAVFAATRRDTASGEGIDVAVIDRNG 195
Score = 41.6 bits (96), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 17/41 (41%), Positives = 27/41 (65%)
Query: 3 ITGTTTLGFRYPEGIILATDSRATANDLIVSQKLNKFCQSS 43
+ GTTT+G R + ++LA D RATA + IV +++ K + S
Sbjct: 11 LKGTTTVGIRSEKAVVLAADKRATAGNFIVHKRVEKIVKIS 51
>sp|Q9YER0|PSB2_AERPE Proteasome subunit beta 2 OS=Aeropyrum pernix (strain ATCC 700893 /
DSM 11879 / JCM 9820 / NBRC 100138 / K1) GN=psmB2 PE=3
SV=2
Length = 219
Score = 70.9 bits (172), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 52/164 (31%), Positives = 82/164 (50%), Gaps = 12/164 (7%)
Query: 127 QVIPVSSSILCTLAGNAADCVYWLHSLAKECKGYECKYRTGMTIRHAANLLVNMVRKYRT 186
+++ +S+ + T++G AD L +E + YE + ++R A+LL N++
Sbjct: 58 KIVMLSNYVAMTVSGLVADAQILSDVLREEIRLYEMTNKVKPSVRFVASLLSNIL----- 112
Query: 187 GNHSSKI-PNGLSFGTLMAAYDEILGPQLYMLDNTGLLIEGTKFCVGSGAEYAQAILDTD 245
SSK P + ++ YD P+LY LD G + E GSG+ A +L+
Sbjct: 113 --FSSKFFPYIVQL--IVGGYDT--QPRLYTLDLFGSITEDKYTATGSGSPIAYGVLEER 166
Query: 246 YRPDLSEEEAYALATSAIYHACRRDIHSGGCVRLYKINGQGWQQ 289
YR DLS EEA +AT+AI A RD SG + I QG+++
Sbjct: 167 YREDLSVEEAIKVATTAIRSAVLRDAASGDGADVVVIGPQGYEE 210
Score = 36.6 bits (83), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 18/40 (45%), Positives = 25/40 (62%)
Query: 4 TGTTTLGFRYPEGIILATDSRATANDLIVSQKLNKFCQSS 43
+GTTT+G + +ILA D RATA LI S+++ K S
Sbjct: 24 SGTTTVGLIASDHVILAADKRATAGFLIASRRVKKIVMLS 63
>sp|Q980L4|PSB1_SULSO Proteasome subunit beta 1 OS=Sulfolobus solfataricus (strain ATCC
35092 / DSM 1617 / JCM 11322 / P2) GN=psmB1 PE=3 SV=1
Length = 196
Score = 70.9 bits (172), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 52/154 (33%), Positives = 74/154 (48%), Gaps = 9/154 (5%)
Query: 133 SSILCTLAGNAADCVYWLHSLAKECKGYECKYRTGMTIRHAANLLVNMVRKYRTGNHSSK 192
+ L AG D + E K YE +++ AA LL ++ +Y+ S+
Sbjct: 43 NKFLMAGAGIYGDLQTLTRIMNVEIKYYEVSTGKPISVHAAAKLLSVILYQYKVMPFISE 102
Query: 193 IPNGLSFGTLMAAYDEILGPQLYMLDNTGLLIEGTKFCVGSGAEYAQAILDTDYRPDLSE 252
I L DE GPQLY+LD G LIE VGSGA A +L+++Y P++S
Sbjct: 103 I--------LFGGVDE-KGPQLYVLDPIGSLIEDNYAAVGSGARIAIGVLESEYDPNMSL 153
Query: 253 EEAYALATSAIYHACRRDIHSGGCVRLYKINGQG 286
+ A L T AI + RDI SG + L I+ +G
Sbjct: 154 DVATQLITKAIKASIERDITSGDGIDLAIIDKKG 187
>sp|D0KRX1|PSB1_SULS9 Proteasome subunit beta 1 OS=Sulfolobus solfataricus (strain 98/2)
GN=psmB1 PE=3 SV=1
Length = 196
Score = 70.9 bits (172), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 52/154 (33%), Positives = 74/154 (48%), Gaps = 9/154 (5%)
Query: 133 SSILCTLAGNAADCVYWLHSLAKECKGYECKYRTGMTIRHAANLLVNMVRKYRTGNHSSK 192
+ L AG D + E K YE +++ AA LL ++ +Y+ S+
Sbjct: 43 NKFLMAGAGIYGDLQTLTRIMNVEIKYYEVSTGKPISVHAAAKLLSVILYQYKVMPFISE 102
Query: 193 IPNGLSFGTLMAAYDEILGPQLYMLDNTGLLIEGTKFCVGSGAEYAQAILDTDYRPDLSE 252
I L DE GPQLY+LD G LIE VGSGA A +L+++Y P++S
Sbjct: 103 I--------LFGGVDE-KGPQLYVLDPIGSLIEDNYAAVGSGARIAIGVLESEYDPNMSL 153
Query: 253 EEAYALATSAIYHACRRDIHSGGCVRLYKINGQG 286
+ A L T AI + RDI SG + L I+ +G
Sbjct: 154 DVATQLITKAIKASIERDITSGDGIDLAIIDKKG 187
>sp|A5UM14|PSB_METS3 Proteasome subunit beta OS=Methanobrevibacter smithii (strain PS /
ATCC 35061 / DSM 861) GN=psmB PE=3 SV=1
Length = 204
Score = 70.9 bits (172), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 46/184 (25%), Positives = 83/184 (45%), Gaps = 12/184 (6%)
Query: 115 SQSSTVPHNTSFQVIPVSSSILCTLAGNAADCVYWLHSLAKECKGYECKYRTGMTIRHAA 174
S + V H + ++ ++ I+ T+AG+ D + + E Y+ + ++++ AA
Sbjct: 29 SMGNLVAHKVAEKIFKINDHIVTTIAGSVGDAQNLMKIIEAEVSLYQMRNNDKISVKAAA 88
Query: 175 NLLVNMVRKYRTGNHSSKIPNGLSFGTLMAAYDEILGPQLYMLDNTGLLIEGTKFCVGSG 234
++ N++R + TL+ D P LY LD G +IE T GSG
Sbjct: 89 SVTANILR-----------SGPMYVQTLLGGMDGD-KPSLYSLDPAGGMIEDTYISTGSG 136
Query: 235 AEYAQAILDTDYRPDLSEEEAYALATSAIYHACRRDIHSGGCVRLYKINGQGWQQVLSRD 294
+ A +L+ Y +++ +E +A AI A RD SG + K+ G++ +
Sbjct: 137 SIVAYGVLEDRYHEEITTDEGLEIAVRAIKAASERDTFSGNGYLVAKVTKDGFEMLDKEK 196
Query: 295 VKDI 298
V DI
Sbjct: 197 VNDI 200
>sp|Q5JDJ9|PSB1_PYRKO Proteasome subunit beta 1 OS=Pyrococcus kodakaraensis (strain ATCC
BAA-918 / JCM 12380 / KOD1) GN=psmB1 PE=3 SV=1
Length = 203
Score = 70.5 bits (171), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 49/174 (28%), Positives = 82/174 (47%), Gaps = 14/174 (8%)
Query: 127 QVIPVSSSILCTLAGNAADCVYWLHSLAKECKGYECKYRTGMTIRHAANLLVNMVRKYRT 186
+V + + AG D + + L E K Y K M+++ A L N++
Sbjct: 40 KVFQIDDHLAIAGAGTVGDILSLVRLLRAEAKLYRAKVSREMSVKALATLTSNIL----- 94
Query: 187 GNHSSKIPNGLSFGT--LMAAYDEILGPQLYMLDNTGLLIEGTKFCVGSGAEYAQAILDT 244
HS + G ++ L+ YD P+LY +D G + E GSG E+A ++L+
Sbjct: 95 --HSGR---GFAYMAWFLVGGYDS--APRLYSIDAAGGVTEDRFTAAGSGMEFAFSVLEE 147
Query: 245 DYRPDLSEEEAYALATSAIYHACRRDIHSGGCVRLYKINGQGWQQVLSRDVKDI 298
+YR + EE LA AI A +RD+ +GG V L I +G+++ ++K +
Sbjct: 148 NYRDGIPLEEGVKLALRAIKAATKRDVFTGGGVTLVTITEEGYREWSEEELKSL 201
Score = 37.0 bits (84), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 14/39 (35%), Positives = 27/39 (69%)
Query: 3 ITGTTTLGFRYPEGIILATDSRATANDLIVSQKLNKFCQ 41
+ GTTT+G +G++LA D RA+ ++++S+++ K Q
Sbjct: 5 LKGTTTVGIVCKDGVVLAADRRASLGNMVLSERVTKVFQ 43
>sp|B6YSW2|PSB1_THEON Proteasome subunit beta 1 OS=Thermococcus onnurineus (strain NA1)
GN=psmB1 PE=3 SV=1
Length = 203
Score = 70.5 bits (171), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 51/166 (30%), Positives = 81/166 (48%), Gaps = 14/166 (8%)
Query: 127 QVIPVSSSILCTLAGNAADCVYWLHSLAKECKGYECKYRTGMTIRHAANLLVNMVRKYRT 186
+V + + AG+ D + + L E K Y K ++++ A L N++
Sbjct: 40 KVFQIDDHLALAGAGSVGDILSLVRLLRAEVKLYRAKVGREISVKALATLTSNIL----- 94
Query: 187 GNHSSK-IPNGLSFG-TLMAAYDEILGPQLYMLDNTGLLIEGTKFCVGSGAEYAQAILDT 244
H S+ +P FG L+A YDE P LY LD G + E GSG E A A+L+
Sbjct: 95 --HGSRFMP---YFGWFLIAGYDE--KPALYSLDMAGGVTEDKFTAAGSGMELAFAVLED 147
Query: 245 DYRPDLSEEEAYALATSAIYHACRRDIHSGGCVRLYKINGQGWQQV 290
Y+ D++ EE LA AI A RRD+ +G + L + +G++++
Sbjct: 148 GYKDDINVEEGVKLALKAIKIATRRDVFTGDGITLVTVTEEGYREL 193
Score = 35.8 bits (81), Expect = 0.43, Method: Compositional matrix adjust.
Identities = 14/39 (35%), Positives = 27/39 (69%)
Query: 3 ITGTTTLGFRYPEGIILATDSRATANDLIVSQKLNKFCQ 41
+ GTTT+G +G++LA D RA+ ++++S+++ K Q
Sbjct: 5 LKGTTTVGIVCKDGVVLAADRRASLGNMVLSKEVTKVFQ 43
>sp|Q29576|PSB8_PIG Proteasome subunit beta type-8 (Fragment) OS=Sus scrofa GN=PSMB8
PE=1 SV=1
Length = 104
Score = 70.5 bits (171), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 40/103 (38%), Positives = 57/103 (55%), Gaps = 9/103 (8%)
Query: 168 MTIRHAANLLVNMVRKYRTGNHSSKIPNGLSFGTLMAAYDEILGPQLYMLDNTGLLIEGT 227
+++ A+ L NM+ +YR GLS G+++ +D+ GP LY +D G + G
Sbjct: 11 ISVSAASKLXSNMMYQYR--------GMGLSMGSMICGWDKK-GPGLYYVDENGTRLSGN 61
Query: 228 KFCVGSGAEYAQAILDTDYRPDLSEEEAYALATSAIYHACRRD 270
F GSG YA ++D+ +R DLS EEAY L AI HA RD
Sbjct: 62 MFSTGSGNTYAYGVMDSGHRYDLSIEEAYDLGRRAIVHATHRD 104
>sp|C6A3R1|PSB2_THESM Proteasome subunit beta 2 OS=Thermococcus sibiricus (strain MM 739
/ DSM 12597) GN=psmB2 PE=3 SV=1
Length = 199
Score = 70.5 bits (171), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 50/164 (30%), Positives = 81/164 (49%), Gaps = 11/164 (6%)
Query: 127 QVIPVSSSILCTLAGNAADCVYWLHSLAKECKGYECKYRTGMTIRHAANLLVNMVRKYRT 186
+++P++ I T AG+ D L E K Y+ + MT + ANLL N++
Sbjct: 39 KILPITDRIAITTAGSVGDLQALARMLEAEAKYYQFTWGKPMTAKAMANLLSNIL----- 93
Query: 187 GNHSSKIPNGLSFGTLMAAYDEILGPQLYMLDNTGLLIEGTKFCVGSGAEYAQAILDTDY 246
N S P + ++ Y E P L LD G LI GSG+ +A AIL+ Y
Sbjct: 94 -NESKWFPYMVQI--IIGGYVE--EPTLASLDPLGGLIFDNYTTTGSGSPFAIAILEDGY 148
Query: 247 RPDLSEEEAYALATSAIYHACRRDIHSGG-CVRLYKINGQGWQQ 289
+ D+S E+A LA A+ A +RD+++G +++ I +G ++
Sbjct: 149 KEDMSIEDARELAIKAVRTAGKRDVYTGERKIQVITITKEGMKE 192
Score = 33.1 bits (74), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 12/37 (32%), Positives = 25/37 (67%)
Query: 4 TGTTTLGFRYPEGIILATDSRATANDLIVSQKLNKFC 40
TGTTT+G + +G++LA D++A+ + ++ + + K
Sbjct: 5 TGTTTVGIKLKDGVVLAADTQASLDHMVETLNIKKIL 41
>sp|Q8ZST5|PSB2_PYRAE Proteasome subunit beta 2 OS=Pyrobaculum aerophilum (strain ATCC
51768 / IM2 / DSM 7523 / JCM 9630 / NBRC 100827)
GN=psmB2 PE=3 SV=1
Length = 203
Score = 70.5 bits (171), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 50/163 (30%), Positives = 76/163 (46%), Gaps = 9/163 (5%)
Query: 127 QVIPVSSSILCTLAGNAADCVYWLHSLAKECKGYECKYRTGMTIRHAANLLVNMVRKYRT 186
+V + + AG AD L K YE + + + A LL ++ R
Sbjct: 41 KVFVIDDKLAIASAGIIADMQTLAKILKLNAKAYELEMKRKPSTHSMARLLSVIMFSRRF 100
Query: 187 GNHSSKIPNGLSFGTLMAAYDEILGPQLYMLDNTGLLIEGTKFCVGSGAEYAQAILDTDY 246
+++ L+ DE GP L ++D G LIE +G+GA+ A A+LDT Y
Sbjct: 101 MPFFAEV--------LVGGIDE-EGPHLIVMDPLGSLIEDNYAALGTGAKLAVAVLDTGY 151
Query: 247 RPDLSEEEAYALATSAIYHACRRDIHSGGCVRLYKINGQGWQQ 289
RPD++ EEA LA A+ A RD SGG + L ++ G ++
Sbjct: 152 RPDITVEEAKKLAVQALKAAIERDPVSGGGIDLAIVDKNGARE 194
>sp|Q8U4C9|PSB1_PYRFU Proteasome subunit beta 1 OS=Pyrococcus furiosus (strain ATCC 43587
/ DSM 3638 / JCM 8422 / Vc1) GN=psmB1 PE=3 SV=1
Length = 196
Score = 69.3 bits (168), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 52/164 (31%), Positives = 78/164 (47%), Gaps = 11/164 (6%)
Query: 127 QVIPVSSSILCTLAGNAADCVYWLHSLAKECKGYECKYRTGMTIRHAANLLVNMVRKYRT 186
++IP++ I T AG+ D L E + Y + MT + ANLL N++ + R
Sbjct: 39 KIIPITDRIAITTAGSVGDVQMLARYLEAEARYYYFTWGRPMTTKAMANLLSNILNENRW 98
Query: 187 GNHSSKIPNGLSFGTLMAAYDEILGPQLYMLDNTGLLIEGTKFCVGSGAEYAQAILDTDY 246
+ +I G DE P + LD G LI GSG +A A+L+ Y
Sbjct: 99 FPYLVQIIIG-------GYVDE---PTIANLDPFGGLIFDDYTATGSGTPFAIAVLEEGY 148
Query: 247 RPDLSEEEAYALATSAIYHACRRDIHSGG-CVRLYKINGQGWQQ 289
R DL+ EEA LA A+ A RRD+++G V++ I G ++
Sbjct: 149 REDLTIEEAKELAIRAVRAAGRRDVYTGSKKVQVVTITKDGMKE 192
Score = 32.7 bits (73), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 12/37 (32%), Positives = 25/37 (67%)
Query: 4 TGTTTLGFRYPEGIILATDSRATANDLIVSQKLNKFC 40
TGTTT+G + +G++LA D++A+ + ++ + + K
Sbjct: 5 TGTTTVGIKVKDGVVLAADTQASLDHMVETLNIKKII 41
>sp|Q975D1|PSB2_SULTO Proteasome subunit beta 2 OS=Sulfolobus tokodaii (strain DSM 16993
/ JCM 10545 / NBRC 100140 / 7) GN=psmB2 PE=3 SV=1
Length = 207
Score = 68.9 bits (167), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 59/187 (31%), Positives = 93/187 (49%), Gaps = 22/187 (11%)
Query: 120 VPHNTSFQVIPVSSSILCTLAGNAADCVYWLHSLAKECKGYECKYRTGM---TIRHAANL 176
V H +V+ V+ +I T AG+ AD + +++ L K Y TGM TI+ A
Sbjct: 39 VAHKYVRKVLYVAPNIGITTAGSVAD-LQFIYDLLKNI--YHYNLITGMRPITIKALATY 95
Query: 177 LVNMVRKYRTGNHSSKIPNGLSFGTLMAAYDEILGPQLYMLDNTGLLIEGTKFCVGSGAE 236
L NM+ + S +P + L+ DE P+LY LD G + E GSG+
Sbjct: 96 LANML------SFSKYLPYIVQI--LIGGVDE--QPRLYNLDYVGDITEEDYTATGSGSV 145
Query: 237 YAQAILDTDYRPDLSEEEAYALATSAIYHACRRDIHSGGCVRLYKINGQGWQQVLSRDVK 296
A +++ +YRPD++ +EA LA AI+ + +RD ++G V + KI G ++ K
Sbjct: 146 EAIGVIEDEYRPDMTLDEAADLARRAIFSSIKRDPYTGTGVIVSKITKNGHEE------K 199
Query: 297 DIYNDRK 303
+ Y RK
Sbjct: 200 EYYPQRK 206
Score = 33.1 bits (74), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 14/37 (37%), Positives = 23/37 (62%)
Query: 4 TGTTTLGFRYPEGIILATDSRATANDLIVSQKLNKFC 40
TGTTT+G + +G++LA D RA+A + + + K
Sbjct: 12 TGTTTVGIKVKDGVVLAADRRASAGMYVAHKYVRKVL 48
>sp|A7KII6|PB6LB_SALSA Proteasome subunit beta type-6-B like protein OS=Salmo salar
GN=psmb6l-b PE=3 SV=1
Length = 217
Score = 68.6 bits (166), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 53/196 (27%), Positives = 87/196 (44%), Gaps = 13/196 (6%)
Query: 100 LLHPVYTGGERCGPFSQSST----VPHNTSFQVIPVSSSILCTLAGNAADCVYWLHSLAK 155
+L + GG G S++S V T ++I V I C +AG+ AD +
Sbjct: 19 ILAVTFNGGVIIGSDSRASIGGSYVSSKTINKLIQVHDRIFCCIAGSLADAQAVTKAAKF 78
Query: 156 ECKGYECKYRTGMTIRHAANLLVNMVRKYRTGNHSSKIPNGLSFGTLMAAYDEILGPQLY 215
+ + + + ++ AA++L + + L G + A +D GPQ+Y
Sbjct: 79 QISFHSIQMESPPLVKAAASVLKELCYNNK---------EELQAGFITAGWDRKKGPQVY 129
Query: 216 MLDNTGLLIEGTKFCVGSGAEYAQAILDTDYRPDLSEEEAYALATSAIYHACRRDIHSGG 275
+ G+L+ GSG+ Y D Y+PD+S+EE AT+A+ A RD SGG
Sbjct: 130 TVALGGMLLSQPFTIGGSGSTYIYGYADAKYKPDMSKEECLQFATNALALAMGRDNVSGG 189
Query: 276 CVRLYKINGQGWQQVL 291
L I +G + V+
Sbjct: 190 VAHLVVITEEGVEHVV 205
Score = 32.0 bits (71), Expect = 6.4, Method: Compositional matrix adjust.
Identities = 17/39 (43%), Positives = 23/39 (58%), Gaps = 1/39 (2%)
Query: 4 TGTTTLGFRYPEGIILATDSRATANDLIVSQK-LNKFCQ 41
TGTT L + G+I+ +DSRA+ VS K +NK Q
Sbjct: 15 TGTTILAVTFNGGVIIGSDSRASIGGSYVSSKTINKLIQ 53
>sp|Q8U125|PSB2_PYRFU Proteasome subunit beta 2 OS=Pyrococcus furiosus (strain ATCC 43587
/ DSM 3638 / JCM 8422 / Vc1) GN=psmB2 PE=3 SV=1
Length = 206
Score = 68.2 bits (165), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 45/150 (30%), Positives = 74/150 (49%), Gaps = 10/150 (6%)
Query: 140 AGNAADCVYWLHSLAKECKGYECKYRTGMTIRHAANLLVNMVRKYRTGNHSSKIPNGLSF 199
AG+ D + + L E Y+ M+++ A LL N++ N S P F
Sbjct: 56 AGDVGDILNLVRLLKAEANLYKSTVGKEMSVKALATLLANIL------NGSKYFPYLGWF 109
Query: 200 GTLMAAYDEILGPQLYMLDNTGLLIEGTKFCVGSGAEYAQAILDTDYRPDLSEEEAYALA 259
L+ YDE P+L+ +D G + E GSG E+A +ILD++YR ++S + LA
Sbjct: 110 --LVGGYDE--KPRLFSVDMVGGITEDNYAAAGSGMEFAYSILDSEYREEMSVNDGIKLA 165
Query: 260 TSAIYHACRRDIHSGGCVRLYKINGQGWQQ 289
AI A +RD+ +G + + I G+++
Sbjct: 166 VKAINVAIKRDVFTGDGLLVVTITKDGYKE 195
Score = 35.0 bits (79), Expect = 0.80, Method: Compositional matrix adjust.
Identities = 18/59 (30%), Positives = 33/59 (55%), Gaps = 7/59 (11%)
Query: 3 ITGTTTLGFRYPEGIILATDSRATANDLIVSQKLNK-------FCQSSLGDSCELLHPV 54
+ GTTT+G EG++LA D+RA+ ++I ++ + K + GD ++L+ V
Sbjct: 8 LKGTTTVGLVCKEGVVLAADTRASLGNIIYAKNVTKIHKIDEHLAIAGAGDVGDILNLV 66
>sp|C5A2D5|PSB2_THEGJ Proteasome subunit beta 2 OS=Thermococcus gammatolerans (strain DSM
15229 / JCM 11827 / EJ3) GN=psmB2 PE=3 SV=1
Length = 200
Score = 68.2 bits (165), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 44/148 (29%), Positives = 74/148 (50%), Gaps = 10/148 (6%)
Query: 127 QVIPVSSSILCTLAGNAADCVYWLHSLAKECKGYECKYRTGMTIRHAANLLVNMVRKYRT 186
+++P++ I T AG+ D L + + Y+ + MT R ANLL N++
Sbjct: 40 KILPITDRIAITTAGSVGDVQALARMLEAQARYYQFTWGRPMTTRAMANLLSNIL----- 94
Query: 187 GNHSSKIPNGLSFGTLMAAYDEILGPQLYMLDNTGLLIEGTKFCVGSGAEYAQAILDTDY 246
N + P + ++ Y + P+L +D G L+ GSG+ +A AI++ Y
Sbjct: 95 -NENKWFPYMVQI--IIGGY--VDKPELASVDALGGLVFEKYTATGSGSPFAIAIIEDGY 149
Query: 247 RPDLSEEEAYALATSAIYHACRRDIHSG 274
R D+S EEA LA A+ A +RD+++G
Sbjct: 150 REDMSIEEAKELAVRAVKTAGKRDVYTG 177
Score = 35.0 bits (79), Expect = 0.69, Method: Compositional matrix adjust.
Identities = 13/37 (35%), Positives = 25/37 (67%)
Query: 4 TGTTTLGFRYPEGIILATDSRATANDLIVSQKLNKFC 40
TGTTT+G + EG++LA D++A+ +++ + + K
Sbjct: 6 TGTTTVGIKVKEGVVLAADTQASLGNMVETLNIRKIL 42
>sp|C9REN7|PSB_METVM Proteasome subunit beta OS=Methanocaldococcus vulcanius (strain
ATCC 700851 / DSM 12094 / M7) GN=psmB PE=3 SV=1
Length = 223
Score = 68.2 bits (165), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 54/177 (30%), Positives = 85/177 (48%), Gaps = 13/177 (7%)
Query: 115 SQSSTVPHNTSFQVIPVSSSILCTLAGNAADCVYWLHSLAKECKGYECKYRTGMTI--RH 172
S + + + ++ + I T+AG+ D + +L E + Y K RTG I R
Sbjct: 27 SMGNLIADKEAKKLYKIDDYIAMTIAGSVGDAQAIVRALIAEARLY--KMRTGKNISPRA 84
Query: 173 AANLLVNMVRKYRTGNHSSKIPNGLSFGTLMAAYDEILGPQLYMLDNTGLLIEGTKFC-V 231
A LL N++ HSS++ L+ ++ YD GP+L+ LD G + E F
Sbjct: 85 CATLLSNIL-------HSSRMFPFLT-QIIIGGYDLTDGPKLFSLDPLGGMNEEKTFTST 136
Query: 232 GSGAEYAQAILDTDYRPDLSEEEAYALATSAIYHACRRDIHSGGCVRLYKINGQGWQ 288
GSG+ A +L+ +Y D+S EE LA A+ A RD +SG V + I +G +
Sbjct: 137 GSGSPIAYGVLEAEYDRDMSIEEGLKLALKALKSAMERDTYSGNGVSVAVITKEGVK 193
Score = 33.1 bits (74), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 22/81 (27%), Positives = 38/81 (46%), Gaps = 14/81 (17%)
Query: 3 ITGTTTLGFRYPEGIILATDSRATANDLIVSQKLNKF----------CQSSLGDSCELLH 52
+ GTTT+G + +ILATD RA+ +LI ++ K S+GD+ ++
Sbjct: 4 MKGTTTVGLICDDAVILATDKRASMGNLIADKEAKKLYKIDDYIAMTIAGSVGDAQAIVR 63
Query: 53 PVYTGGE----RCGQSYSQRS 69
+ R G++ S R+
Sbjct: 64 ALIAEARLYKMRTGKNISPRA 84
>sp|A4WH05|PSB1_PYRAR Proteasome subunit beta 1 OS=Pyrobaculum arsenaticum (strain DSM
13514 / JCM 11321) GN=psmB1 PE=3 SV=1
Length = 202
Score = 67.4 bits (163), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 48/177 (27%), Positives = 82/177 (46%), Gaps = 15/177 (8%)
Query: 120 VPHNTSFQVIPVSSSILCTLAGNAADCVYWLHSLAKECKGYECKYRTGMTIRHAAN---L 176
+ H ++ + + T++G AD L L + Y+ ++R + IR N L
Sbjct: 27 IAHKKGEKLWKIDDHVAATMSGGVADLQNILSFLTVRAREYKTQFRRPIPIRALVNYMSL 86
Query: 177 LVNMVRKYRTGNHSSKIPNGLSFGTLMAAYDEILGPQLYMLDNTGLLIEGTKFCVGSGAE 236
++ R Y HS ++ DE G +YM+D G + + GSG+
Sbjct: 87 ILFYSRPYVYVVHS-----------IIGGVDEEEGAVMYMVDWLGTVTKEKYVATGSGSP 135
Query: 237 YAQAILDTDYRPDLSEEEAYALATSAIYHACRRDIHSGGCVRLYKINGQ-GWQQVLS 292
YA+ +L+ YR DL+ EEA LA +AI A R D SG + + I + G++++ +
Sbjct: 136 YAKGVLEVGYRGDLTVEEAVDLAINAIKAAIRNDPGSGEGIDVVTITKRDGFKRIFT 192
Score = 31.6 bits (70), Expect = 7.0, Method: Compositional matrix adjust.
Identities = 15/36 (41%), Positives = 21/36 (58%)
Query: 6 TTTLGFRYPEGIILATDSRATANDLIVSQKLNKFCQ 41
TTT+G +G++LATD R TA I +K K +
Sbjct: 2 TTTVGIVVKDGVVLATDKRVTAGYYIAHKKGEKLWK 37
>sp|B6YXV3|PSB2_THEON Proteasome subunit beta 2 OS=Thermococcus onnurineus (strain NA1)
GN=psmB2 PE=3 SV=1
Length = 200
Score = 67.4 bits (163), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 48/161 (29%), Positives = 79/161 (49%), Gaps = 11/161 (6%)
Query: 127 QVIPVSSSILCTLAGNAADCVYWLHSLAKECKGYECKYRTGMTIRHAANLLVNMVRKYRT 186
++IP++ I T AG+ D L E + Y+ + M+ + ANLL N++
Sbjct: 40 KIIPITDRIAITTAGSVGDVQALARMLEAEARYYQFTWGKPMSTKAMANLLSNIL----- 94
Query: 187 GNHSSKIPNGLSFGTLMAAYDEILGPQLYMLDNTGLLIEGTKFCVGSGAEYAQAILDTDY 246
N + P + ++ Y E P L LD G LI GSG+ +A A+L+ Y
Sbjct: 95 -NGNKWFPYLVQI--ILGGYVE--EPTLANLDPLGGLIFDDYTATGSGSPFAIAVLEDGY 149
Query: 247 RPDLSEEEAYALATSAIYHACRRDIHSGG-CVRLYKINGQG 286
+ D+S EEA LA A+ A +RD+++G +++ I +G
Sbjct: 150 KKDMSIEEAKELAVRAVRTAGKRDVYTGSRKIQIVAITKEG 190
>sp|C3N7K2|PSB2_SULIY Proteasome subunit beta 2 OS=Sulfolobus islandicus (strain
Y.G.57.14 / Yellowstone #1) GN=psmB2 PE=3 SV=1
Length = 196
Score = 67.4 bits (163), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 50/151 (33%), Positives = 73/151 (48%), Gaps = 9/151 (5%)
Query: 136 LCTLAGNAADCVYWLHSLAKECKGYECKYRTGMTIRHAANLLVNMVRKYRTGNHSSKIPN 195
L AG D + E K YE +++ AA LL ++ +Y+ S+I
Sbjct: 46 LMAGAGIYGDLQTLTRIMNVEIKYYEISTGKPISVHAAAKLLSVILYQYKVMPFISEI-- 103
Query: 196 GLSFGTLMAAYDEILGPQLYMLDNTGLLIEGTKFCVGSGAEYAQAILDTDYRPDLSEEEA 255
L DE GPQLY+LD G LIE VGSGA A +L+++Y P+++ + A
Sbjct: 104 ------LFGGVDE-KGPQLYVLDPIGSLIEDNYAAVGSGARIAIGVLESEYDPNMNLDIA 156
Query: 256 YALATSAIYHACRRDIHSGGCVRLYKINGQG 286
L T AI + RDI SG + L ++ +G
Sbjct: 157 AQLITKAIKASIERDITSGDGIDLAIMDKKG 187
>sp|C3MY41|PSB2_SULIM Proteasome subunit beta 2 OS=Sulfolobus islandicus (strain M.14.25
/ Kamchatka #1) GN=psmB2 PE=3 SV=1
Length = 196
Score = 67.4 bits (163), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 50/151 (33%), Positives = 73/151 (48%), Gaps = 9/151 (5%)
Query: 136 LCTLAGNAADCVYWLHSLAKECKGYECKYRTGMTIRHAANLLVNMVRKYRTGNHSSKIPN 195
L AG D + E K YE +++ AA LL ++ +Y+ S+I
Sbjct: 46 LMAGAGIYGDLQTLTRIMNVEIKYYEISTGKPISVHAAAKLLSVILYQYKVMPFISEI-- 103
Query: 196 GLSFGTLMAAYDEILGPQLYMLDNTGLLIEGTKFCVGSGAEYAQAILDTDYRPDLSEEEA 255
L DE GPQLY+LD G LIE VGSGA A +L+++Y P+++ + A
Sbjct: 104 ------LFGGVDE-KGPQLYVLDPIGSLIEDNYAAVGSGARIAIGVLESEYDPNMNLDIA 156
Query: 256 YALATSAIYHACRRDIHSGGCVRLYKINGQG 286
L T AI + RDI SG + L ++ +G
Sbjct: 157 AQLITKAIKASIERDITSGDGIDLAIMDKKG 187
>sp|C3MRE5|PSB2_SULIL Proteasome subunit beta 2 OS=Sulfolobus islandicus (strain L.S.2.15
/ Lassen #1) GN=psmB2 PE=3 SV=1
Length = 196
Score = 67.4 bits (163), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 50/151 (33%), Positives = 73/151 (48%), Gaps = 9/151 (5%)
Query: 136 LCTLAGNAADCVYWLHSLAKECKGYECKYRTGMTIRHAANLLVNMVRKYRTGNHSSKIPN 195
L AG D + E K YE +++ AA LL ++ +Y+ S+I
Sbjct: 46 LMAGAGIYGDLQTLTRIMNVEIKYYEISTGKPISVHAAAKLLSVILYQYKVMPFISEI-- 103
Query: 196 GLSFGTLMAAYDEILGPQLYMLDNTGLLIEGTKFCVGSGAEYAQAILDTDYRPDLSEEEA 255
L DE GPQLY+LD G LIE VGSGA A +L+++Y P+++ + A
Sbjct: 104 ------LFGGVDE-KGPQLYVLDPIGSLIEDNYAAVGSGARIAIGVLESEYDPNMNLDIA 156
Query: 256 YALATSAIYHACRRDIHSGGCVRLYKINGQG 286
L T AI + RDI SG + L ++ +G
Sbjct: 157 AQLITKAIKASIERDITSGDGIDLAIMDKKG 187
>sp|C4KIR0|PSB2_SULIK Proteasome subunit beta 2 OS=Sulfolobus islandicus (strain M.16.4 /
Kamchatka #3) GN=psmB2 PE=3 SV=1
Length = 196
Score = 67.4 bits (163), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 50/151 (33%), Positives = 73/151 (48%), Gaps = 9/151 (5%)
Query: 136 LCTLAGNAADCVYWLHSLAKECKGYECKYRTGMTIRHAANLLVNMVRKYRTGNHSSKIPN 195
L AG D + E K YE +++ AA LL ++ +Y+ S+I
Sbjct: 46 LMAGAGIYGDLQTLTRIMNVEIKYYEISTGKPISVHAAAKLLSVILYQYKVMPFISEI-- 103
Query: 196 GLSFGTLMAAYDEILGPQLYMLDNTGLLIEGTKFCVGSGAEYAQAILDTDYRPDLSEEEA 255
L DE GPQLY+LD G LIE VGSGA A +L+++Y P+++ + A
Sbjct: 104 ------LFGGVDE-KGPQLYVLDPIGSLIEDNYAAVGSGARIAIGVLESEYDPNMNLDIA 156
Query: 256 YALATSAIYHACRRDIHSGGCVRLYKINGQG 286
L T AI + RDI SG + L ++ +G
Sbjct: 157 AQLITKAIKASIERDITSGDGIDLAIMDKKG 187
>sp|D2PDG6|PSB2_SULID Proteasome subunit beta 2 OS=Sulfolobus islandicus (strain L.D.8.5
/ Lassen #2) GN=psmB2 PE=3 SV=1
Length = 196
Score = 67.4 bits (163), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 50/151 (33%), Positives = 73/151 (48%), Gaps = 9/151 (5%)
Query: 136 LCTLAGNAADCVYWLHSLAKECKGYECKYRTGMTIRHAANLLVNMVRKYRTGNHSSKIPN 195
L AG D + E K YE +++ AA LL ++ +Y+ S+I
Sbjct: 46 LMAGAGIYGDLQTLTRIMNVEIKYYEISTGKPISVHAAAKLLSVILYQYKVMPFISEI-- 103
Query: 196 GLSFGTLMAAYDEILGPQLYMLDNTGLLIEGTKFCVGSGAEYAQAILDTDYRPDLSEEEA 255
L DE GPQLY+LD G LIE VGSGA A +L+++Y P+++ + A
Sbjct: 104 ------LFGGVDE-KGPQLYVLDPIGSLIEDNYAAVGSGARIAIGVLESEYDPNMNLDIA 156
Query: 256 YALATSAIYHACRRDIHSGGCVRLYKINGQG 286
L T AI + RDI SG + L ++ +G
Sbjct: 157 AQLITKAIKASIERDITSGDGIDLAIMDKKG 187
>sp|C3MZI0|PSB2_SULIA Proteasome subunit beta 2 OS=Sulfolobus islandicus (strain M.16.27)
GN=psmB2 PE=3 SV=1
Length = 196
Score = 67.4 bits (163), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 50/151 (33%), Positives = 73/151 (48%), Gaps = 9/151 (5%)
Query: 136 LCTLAGNAADCVYWLHSLAKECKGYECKYRTGMTIRHAANLLVNMVRKYRTGNHSSKIPN 195
L AG D + E K YE +++ AA LL ++ +Y+ S+I
Sbjct: 46 LMAGAGIYGDLQTLTRIMNVEIKYYEISTGKPISVHAAAKLLSVILYQYKVMPFISEI-- 103
Query: 196 GLSFGTLMAAYDEILGPQLYMLDNTGLLIEGTKFCVGSGAEYAQAILDTDYRPDLSEEEA 255
L DE GPQLY+LD G LIE VGSGA A +L+++Y P+++ + A
Sbjct: 104 ------LFGGVDE-KGPQLYVLDPIGSLIEDNYAAVGSGARIAIGVLESEYDPNMNLDIA 156
Query: 256 YALATSAIYHACRRDIHSGGCVRLYKINGQG 286
L T AI + RDI SG + L ++ +G
Sbjct: 157 AQLITKAIKASIERDITSGDGIDLAIMDKKG 187
>sp|C3NFX2|PSB1_SULIN Proteasome subunit beta 1 OS=Sulfolobus islandicus (strain
Y.N.15.51 / Yellowstone #2) GN=psmB1 PE=3 SV=1
Length = 196
Score = 67.4 bits (163), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 50/151 (33%), Positives = 73/151 (48%), Gaps = 9/151 (5%)
Query: 136 LCTLAGNAADCVYWLHSLAKECKGYECKYRTGMTIRHAANLLVNMVRKYRTGNHSSKIPN 195
L AG D + E K YE +++ AA LL ++ +Y+ S+I
Sbjct: 46 LMAGAGIYGDLQTLTRIMNVEIKYYEISTGKPISVHAAAKLLSVILYQYKVMPFISEI-- 103
Query: 196 GLSFGTLMAAYDEILGPQLYMLDNTGLLIEGTKFCVGSGAEYAQAILDTDYRPDLSEEEA 255
L DE GPQLY+LD G LIE VGSGA A +L+++Y P+++ + A
Sbjct: 104 ------LFGGVDE-KGPQLYVLDPIGSLIEDNYAAVGSGARIAIGVLESEYDPNMNLDIA 156
Query: 256 YALATSAIYHACRRDIHSGGCVRLYKINGQG 286
L T AI + RDI SG + L ++ +G
Sbjct: 157 AQLITKAIKASIERDITSGDGIDLAIMDKKG 187
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.319 0.135 0.415
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 121,351,821
Number of Sequences: 539616
Number of extensions: 4947052
Number of successful extensions: 11013
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 299
Number of HSP's successfully gapped in prelim test: 85
Number of HSP's that attempted gapping in prelim test: 10333
Number of HSP's gapped (non-prelim): 675
length of query: 312
length of database: 191,569,459
effective HSP length: 117
effective length of query: 195
effective length of database: 128,434,387
effective search space: 25044705465
effective search space used: 25044705465
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 61 (28.1 bits)