Query psy14210
Match_columns 312
No_of_seqs 194 out of 1585
Neff 6.8
Searched_HMMs 46136
Date Fri Aug 16 22:16:14 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy14210.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/14210hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG0638 PRE1 20S proteasome, a 100.0 1.3E-45 2.8E-50 337.2 26.0 207 3-305 28-235 (236)
2 PTZ00488 Proteasome subunit be 100.0 1.1E-45 2.4E-50 339.6 25.7 207 1-305 35-241 (247)
3 TIGR03690 20S_bact_beta protea 100.0 3.9E-44 8.4E-49 323.9 25.2 207 4-304 1-216 (219)
4 cd03758 proteasome_beta_type_2 100.0 3.2E-44 6.9E-49 318.5 23.7 190 6-290 2-191 (193)
5 cd03750 proteasome_alpha_type_ 100.0 4.4E-44 9.6E-49 325.1 25.0 201 3-299 25-226 (227)
6 cd03761 proteasome_beta_type_5 100.0 5.5E-44 1.2E-48 315.6 23.8 188 6-291 1-188 (188)
7 PTZ00246 proteasome subunit al 100.0 9.1E-44 2E-48 328.0 26.1 212 2-306 28-245 (253)
8 cd03760 proteasome_beta_type_4 100.0 7E-44 1.5E-48 317.0 23.6 193 4-291 1-196 (197)
9 cd03759 proteasome_beta_type_3 100.0 1.2E-43 2.5E-48 315.3 23.2 189 4-289 2-191 (195)
10 cd03757 proteasome_beta_type_1 100.0 3E-43 6.6E-48 316.6 22.9 193 1-290 4-205 (212)
11 PRK03996 proteasome subunit al 100.0 1.9E-42 4.2E-47 316.9 25.2 205 2-302 33-239 (241)
12 TIGR03634 arc_protsome_B prote 100.0 1.8E-42 3.8E-47 304.6 22.9 185 5-287 1-185 (185)
13 KOG0175|consensus 100.0 2.2E-43 4.9E-48 314.9 17.0 204 2-303 68-271 (285)
14 cd03764 proteasome_beta_archea 100.0 3.8E-42 8.2E-47 303.4 23.6 188 6-291 1-188 (188)
15 cd03763 proteasome_beta_type_7 100.0 6.3E-42 1.4E-46 302.5 24.0 188 6-292 1-188 (189)
16 cd03762 proteasome_beta_type_6 100.0 6.4E-42 1.4E-46 301.9 23.9 186 6-289 1-186 (188)
17 TIGR03633 arc_protsome_A prote 100.0 5.3E-42 1.2E-46 310.7 23.5 197 2-294 26-224 (224)
18 cd03752 proteasome_alpha_type_ 100.0 3.9E-41 8.4E-46 302.9 22.5 188 2-282 26-213 (213)
19 cd01912 proteasome_beta protea 100.0 1E-40 2.3E-45 293.7 23.4 188 6-290 1-188 (189)
20 cd03765 proteasome_beta_bacter 100.0 2.3E-40 5E-45 302.0 22.1 158 128-289 33-204 (236)
21 cd03751 proteasome_alpha_type_ 100.0 2.3E-40 5.1E-45 298.0 21.8 185 3-282 28-212 (212)
22 cd03755 proteasome_alpha_type_ 100.0 2.8E-40 6.1E-45 296.1 21.9 184 2-282 24-207 (207)
23 cd03756 proteasome_alpha_arche 100.0 4.4E-40 9.5E-45 295.6 22.5 186 2-283 25-210 (211)
24 cd01911 proteasome_alpha prote 100.0 8.6E-40 1.9E-44 293.2 21.8 186 2-282 24-209 (209)
25 PF00227 Proteasome: Proteasom 100.0 8.1E-40 1.8E-44 287.3 20.8 188 2-282 1-190 (190)
26 KOG0176|consensus 100.0 8E-40 1.7E-44 282.5 19.7 206 2-301 31-240 (241)
27 cd03749 proteasome_alpha_type_ 100.0 1.6E-39 3.4E-44 292.3 22.1 152 127-283 57-211 (211)
28 cd03754 proteasome_alpha_type_ 100.0 2E-39 4.3E-44 292.4 21.9 184 4-282 28-215 (215)
29 KOG0174|consensus 100.0 1E-39 2.2E-44 281.1 16.9 199 2-298 16-216 (224)
30 cd03753 proteasome_alpha_type_ 100.0 7.5E-39 1.6E-43 288.0 22.0 187 2-282 24-213 (213)
31 cd01906 proteasome_protease_Hs 100.0 1.5E-38 3.3E-43 277.5 22.6 182 6-282 1-182 (182)
32 TIGR03691 20S_bact_alpha prote 100.0 2.2E-38 4.7E-43 288.1 22.7 167 128-299 53-228 (228)
33 KOG0178|consensus 100.0 3.2E-37 6.9E-42 268.7 18.8 178 126-307 63-245 (249)
34 KOG0181|consensus 100.0 1.4E-37 3E-42 268.1 15.3 204 2-301 29-232 (233)
35 KOG0185|consensus 100.0 2.7E-37 5.9E-42 272.9 16.3 210 2-307 38-251 (256)
36 KOG0183|consensus 100.0 1.4E-36 3E-41 265.3 17.0 206 2-304 27-235 (249)
37 KOG0173|consensus 100.0 7.6E-35 1.6E-39 259.8 16.9 189 3-290 35-223 (271)
38 KOG0863|consensus 100.0 5.1E-34 1.1E-38 251.6 16.3 217 66-306 20-240 (264)
39 KOG0179|consensus 100.0 1.4E-32 3.1E-37 239.5 18.5 190 3-289 27-227 (235)
40 KOG0177|consensus 100.0 9.7E-33 2.1E-37 237.2 16.9 170 117-292 24-193 (200)
41 PRK05456 ATP-dependent proteas 100.0 1.9E-32 4.2E-37 238.8 19.1 167 5-281 1-171 (172)
42 KOG0184|consensus 100.0 2E-32 4.4E-37 240.3 17.1 206 3-303 32-239 (254)
43 cd01913 protease_HslV Protease 100.0 7.7E-32 1.7E-36 234.1 18.2 166 6-281 1-170 (171)
44 TIGR03692 ATP_dep_HslV ATP-dep 100.0 1.5E-31 3.3E-36 232.2 19.0 166 6-281 1-170 (171)
45 KOG0182|consensus 100.0 6.8E-31 1.5E-35 229.3 21.5 208 4-306 35-246 (246)
46 KOG0180|consensus 100.0 1.1E-29 2.3E-34 215.5 17.5 190 2-288 5-195 (204)
47 cd01901 Ntn_hydrolase The Ntn 100.0 6.4E-27 1.4E-31 197.3 20.3 162 6-264 1-163 (164)
48 COG5405 HslV ATP-dependent pro 99.6 6.8E-14 1.5E-18 118.4 13.8 172 3-283 2-176 (178)
49 COG3484 Predicted proteasome-t 99.3 1.6E-11 3.6E-16 107.6 12.8 153 134-287 44-203 (255)
50 PTZ00246 proteasome subunit al 90.2 0.085 1.8E-06 48.7 -0.0 35 67-120 20-54 (253)
51 cd03752 proteasome_alpha_type_ 90.2 0.093 2E-06 47.1 0.2 80 67-186 18-97 (213)
52 cd03750 proteasome_alpha_type_ 88.4 0.14 3.1E-06 46.4 0.1 34 67-119 16-49 (227)
53 cd03749 proteasome_alpha_type_ 86.8 0.19 4.2E-06 45.0 -0.1 34 67-119 16-49 (211)
54 cd03753 proteasome_alpha_type_ 85.7 0.26 5.6E-06 44.2 0.1 34 67-119 16-49 (213)
55 PF09894 DUF2121: Uncharacteri 85.6 3 6.5E-05 37.1 6.7 49 236-284 131-179 (194)
56 cd03755 proteasome_alpha_type_ 84.6 0.31 6.7E-06 43.5 0.2 34 67-119 16-49 (207)
57 PRK03996 proteasome subunit al 84.3 0.32 6.9E-06 44.5 0.1 34 67-119 25-58 (241)
58 cd03751 proteasome_alpha_type_ 83.7 0.32 7E-06 43.7 -0.1 34 67-119 19-52 (212)
59 TIGR03633 arc_protsome_A prote 82.8 0.4 8.6E-06 43.3 0.1 34 67-119 18-51 (224)
60 cd03756 proteasome_alpha_arche 79.7 0.6 1.3E-05 41.7 0.1 34 67-119 17-50 (211)
61 COG4079 Uncharacterized protei 79.3 4.5 9.6E-05 37.4 5.5 65 236-300 132-198 (293)
62 cd03754 proteasome_alpha_type_ 78.8 0.64 1.4E-05 41.8 0.0 35 67-119 17-51 (215)
63 KOG3361|consensus 77.4 3.1 6.7E-05 34.9 3.6 80 215-305 71-150 (157)
64 cd01911 proteasome_alpha prote 75.1 0.7 1.5E-05 41.1 -0.8 33 67-118 16-48 (209)
65 KOG0184|consensus 74.7 0.97 2.1E-05 41.0 0.0 78 67-186 23-101 (254)
66 COG0638 PRE1 20S proteasome, a 74.5 1 2.2E-05 41.3 0.0 25 98-122 31-55 (236)
67 KOG0174|consensus 63.7 3.3 7.3E-05 36.9 1.0 24 96-119 18-41 (224)
68 KOG0185|consensus 60.5 4.2 9E-05 37.3 1.0 66 84-151 30-95 (256)
69 cd03759 proteasome_beta_type_3 60.1 3.4 7.4E-05 36.4 0.4 23 97-119 3-25 (195)
70 KOG0173|consensus 58.9 4.7 0.0001 37.3 1.1 144 60-237 9-159 (271)
71 cd03757 proteasome_beta_type_1 58.1 3.8 8.2E-05 36.7 0.4 24 97-120 8-31 (212)
72 cd01906 proteasome_protease_Hs 54.3 5.4 0.00012 34.1 0.7 22 99-120 2-23 (182)
73 KOG0183|consensus 54.3 2.9 6.3E-05 37.8 -1.0 46 67-132 19-64 (249)
74 TIGR03691 20S_bact_alpha prote 54.2 3.5 7.5E-05 37.6 -0.6 30 68-116 17-46 (228)
75 cd01912 proteasome_beta protea 52.6 4.6 9.9E-05 35.0 -0.0 22 99-120 2-23 (189)
76 cd03762 proteasome_beta_type_6 51.0 6 0.00013 34.4 0.5 21 99-119 2-22 (188)
77 cd03763 proteasome_beta_type_7 50.3 5.8 0.00013 34.6 0.3 21 99-119 2-22 (189)
78 cd03760 proteasome_beta_type_4 47.5 7.7 0.00017 34.1 0.6 22 97-118 2-23 (197)
79 TIGR03634 arc_protsome_B prote 46.5 7.7 0.00017 33.6 0.4 21 98-118 2-22 (185)
80 cd03761 proteasome_beta_type_5 45.2 8.2 0.00018 33.7 0.4 21 99-119 2-22 (188)
81 cd03765 proteasome_beta_bacter 44.9 11 0.00023 34.7 1.1 20 100-119 3-22 (236)
82 TIGR03692 ATP_dep_HslV ATP-dep 44.6 7 0.00015 34.2 -0.1 20 99-118 2-21 (171)
83 PRK05456 ATP-dependent proteas 44.4 7.1 0.00015 34.1 -0.1 20 99-118 3-22 (172)
84 cd03758 proteasome_beta_type_2 44.1 6.9 0.00015 34.4 -0.2 21 99-119 3-23 (193)
85 cd03764 proteasome_beta_archea 43.9 8.3 0.00018 33.5 0.2 21 99-119 2-22 (188)
86 cd01913 protease_HslV Protease 43.0 8.2 0.00018 33.8 0.0 20 99-118 2-21 (171)
87 cd06404 PB1_aPKC PB1 domain is 41.0 1.3E+02 0.0028 23.2 6.3 51 246-302 16-68 (83)
88 PF00227 Proteasome: Proteasom 40.1 6.9 0.00015 33.7 -0.9 23 96-118 3-25 (190)
89 TIGR03690 20S_bact_beta protea 39.8 11 0.00025 33.8 0.5 23 97-119 2-24 (219)
90 COG0148 Eno Enolase [Carbohydr 39.5 62 0.0013 32.2 5.4 174 128-305 67-275 (423)
91 PTZ00488 Proteasome subunit be 39.2 11 0.00025 34.6 0.4 22 97-118 39-60 (247)
92 PF03928 DUF336: Domain of unk 37.4 58 0.0013 26.7 4.3 36 248-287 1-36 (132)
93 COG3193 GlcG Uncharacterized p 32.4 1.1E+02 0.0024 26.0 5.2 36 247-286 5-40 (141)
94 PRK09732 hypothetical protein; 31.2 1.2E+02 0.0025 25.4 5.2 35 248-286 5-39 (134)
95 COG4831 Roadblock/LC7 domain [ 31.2 2.4E+02 0.0051 22.5 6.5 58 247-304 30-108 (109)
96 PF07499 RuvA_C: RuvA, C-termi 27.7 38 0.00081 22.8 1.4 33 230-262 12-45 (47)
97 KOG2947|consensus 26.5 2.1E+02 0.0044 27.0 6.2 59 202-263 224-289 (308)
98 KOG0463|consensus 26.2 44 0.00094 33.3 2.0 51 2-66 384-435 (641)
99 PF00564 PB1: PB1 domain; Int 25.8 2.2E+02 0.0048 20.7 5.5 51 248-305 20-72 (84)
100 cd01901 Ntn_hydrolase The Ntn 25.4 31 0.00068 27.9 0.8 23 98-120 1-23 (164)
101 COG0822 IscU NifU homolog invo 25.4 2.9E+02 0.0062 23.5 6.7 94 213-307 44-146 (150)
102 PRK02260 S-ribosylhomocysteina 23.3 4.5E+02 0.0097 22.8 7.4 77 170-269 53-150 (158)
103 cd06402 PB1_p62 The PB1 domain 22.7 2.9E+02 0.0062 21.4 5.6 49 249-303 26-76 (87)
104 PF09894 DUF2121: Uncharacteri 22.4 67 0.0014 28.7 2.2 22 6-27 2-23 (194)
105 PF08269 Cache_2: Cache domain 20.6 1.2E+02 0.0027 22.9 3.2 39 248-291 33-71 (95)
106 KOG1930|consensus 20.4 64 0.0014 32.3 1.9 68 243-310 212-284 (483)
No 1
>COG0638 PRE1 20S proteasome, alpha and beta subunits [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.3e-45 Score=337.15 Aligned_cols=207 Identities=33% Similarity=0.525 Sum_probs=199.2
Q ss_pred ccCceEEEEEcCCeEEEEEcCCccCCcccccccccccccccCCCcccccCccccCCcccCCCccccccccccccccccCC
Q psy14210 3 ITGTTTLGFRYPEGIILATDSRATANDLIVSQKLNKFCQSSLGDSCELLHPVYTGGERCGQSYSQRSHCVAETQQDHFLS 82 (312)
Q Consensus 3 ~~g~t~~~~~~~~gv~~~~d~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (312)
.+|||+|||+++||||||+|+|+|+|.++.++.++|
T Consensus 28 ~~gtT~vgik~~dgVVlaadkr~t~~~~~~~~~~~K-------------------------------------------- 63 (236)
T COG0638 28 RGGTTTVGIKGKDGVVLAADKRATSGLLIASSNVEK-------------------------------------------- 63 (236)
T ss_pred cCCceEEEEEecCEEEEEEeccCCCCceecccccce--------------------------------------------
Confidence 457999999999999999999999999999999999
Q ss_pred CCCCCCccccccCCccccccccccCCccccCCCCCCCCCCCCcceEEEecCeEEEEEeCChhHHHHHHHHHHHHhhhhhh
Q psy14210 83 PPLSQSSQHIISGDSCELLHPVYTGGERCGPFSQSSTVPHNTSFQVIPVSSSILCTLAGNAADCVYWLHSLAKECKGYEC 162 (312)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~dgVv~~~~~~~~~~~~~~~~KI~~I~d~i~~a~sG~~aD~q~l~~~lr~~~~~~~~ 162 (312)
||+|+|||+|++||+.+|++.++++++.+++.|++
T Consensus 64 ---------------------------------------------i~~I~d~i~~~~sG~~aDa~~lv~~~r~~a~~~~~ 98 (236)
T COG0638 64 ---------------------------------------------IFKIDDHIGMAIAGLAADAQVLVRYARAEAQLYRL 98 (236)
T ss_pred ---------------------------------------------EEEecCCEEEEeccCcHhHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999
Q ss_pred hcCCccCHHHHHHHHHHHHHHhccCCCCCCCCCCcccceeeeEEecCCCCeEEEEcCCceEEecCeeeEccChHHHHHHH
Q psy14210 163 KYRTGMTIRHAANLLVNMVRKYRTGNHSSKIPNGLSFGTLMAAYDEILGPQLYMLDNTGLLIEGTKFCVGSGAEYAQAIL 242 (312)
Q Consensus 163 ~~g~~i~v~~la~~ls~~l~~~~~~~~~~~rP~gls~~~IIaG~D~~~gp~Ly~iDpsGs~~e~~~~AiGsGs~~a~~~L 242 (312)
.++++++++.+++++++++|.+++ + +|||+ +++||||+|+ ++|+||++||+|++.+++++|+|+|+.+++++|
T Consensus 99 ~~~~~i~v~~la~~ls~~l~~~~~--~--~rP~g--v~~iiaG~d~-~~p~Ly~~Dp~G~~~~~~~~a~Gsgs~~a~~~L 171 (236)
T COG0638 99 RYGEPISVEALAKLLSNILQEYTQ--S--GRPYG--VSLLVAGVDD-GGPRLYSTDPSGSYNEYKATAIGSGSQFAYGFL 171 (236)
T ss_pred HhCCCCCHHHHHHHHHHHHHHhcc--C--cccce--EEEEEEEEcC-CCCeEEEECCCCceeecCEEEEcCCcHHHHHHH
Confidence 999999999999999999999998 5 89998 5789999999 899999999999999999999999999999999
Q ss_pred HhhCCCCCCHHHHHHHHHHHHHHHHHhcCcCCCcEEEEEEEC-CCeEEeChhHHHHHHHHHhcC
Q psy14210 243 DTDYRPDLSEEEAYALATSAIYHACRRDIHSGGCVRLYKING-QGWQQVLSRDVKDIYNDRKEA 305 (312)
Q Consensus 243 e~~y~~~ms~eEAi~la~kaL~~a~~rD~~sg~~ieI~iItk-~G~~~l~~~eI~~~l~~~~~~ 305 (312)
|++|+++|++|||++++++||+.+++||..++++++|++|++ +|++.++.++++.++++++++
T Consensus 172 e~~y~~~m~~eeai~la~~al~~a~~rd~~s~~~~~v~vi~~~~~~~~~~~~~~~~~~~~~~~~ 235 (236)
T COG0638 172 EKEYREDLSLEEAIELAVKALRAAIERDAASGGGIEVAVITKDEGFRKLDGEEIKKLLDDLSEK 235 (236)
T ss_pred HhhccCCCCHHHHHHHHHHHHHHHHhccccCCCCeEEEEEEcCCCeEEcCHHHHHHHHHHHhhc
Confidence 999999999999999999999999999998999999999999 799999999999999988764
No 2
>PTZ00488 Proteasome subunit beta type-5; Provisional
Probab=100.00 E-value=1.1e-45 Score=339.58 Aligned_cols=207 Identities=41% Similarity=0.739 Sum_probs=197.8
Q ss_pred CcccCceEEEEEcCCeEEEEEcCCccCCcccccccccccccccCCCcccccCccccCCcccCCCcccccccccccccccc
Q psy14210 1 MFITGTTTLGFRYPEGIILATDSRATANDLIVSQKLNKFCQSSLGDSCELLHPVYTGGERCGQSYSQRSHCVAETQQDHF 80 (312)
Q Consensus 1 ~~~~g~t~~~~~~~~gv~~~~d~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (312)
++.+|||+|||+++||||||+|+|.++|.++.++..+|
T Consensus 35 ~~~~G~T~IgIk~kdgVvlAaD~r~~~g~li~~~~~~K------------------------------------------ 72 (247)
T PTZ00488 35 EFAHGTTTLAFKYGGGIIIAVDSKATAGPYIASQSVKK------------------------------------------ 72 (247)
T ss_pred ccCCCceEEEEEeCCEEEEEEecCcccCCEEEcCCcCc------------------------------------------
Confidence 46789999999999999999999999999999998888
Q ss_pred CCCCCCCCccccccCCccccccccccCCccccCCCCCCCCCCCCcceEEEecCeEEEEEeCChhHHHHHHHHHHHHhhhh
Q psy14210 81 LSPPLSQSSQHIISGDSCELLHPVYTGGERCGPFSQSSTVPHNTSFQVIPVSSSILCTLAGNAADCVYWLHSLAKECKGY 160 (312)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~dgVv~~~~~~~~~~~~~~~~KI~~I~d~i~~a~sG~~aD~q~l~~~lr~~~~~~ 160 (312)
||+|++|++|+++|+.+|++.++++++.+++.|
T Consensus 73 -----------------------------------------------I~~I~~~i~~~~sG~~aD~~~l~~~lr~~~~~y 105 (247)
T PTZ00488 73 -----------------------------------------------VIEINPTLLGTMAGGAADCSFWERELAMQCRLY 105 (247)
T ss_pred -----------------------------------------------eEEcCCCEEEEeCcCHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999
Q ss_pred hhhcCCccCHHHHHHHHHHHHHHhccCCCCCCCCCCcccceeeeEEecCCCCeEEEEcCCceEEecCeeeEccChHHHHH
Q psy14210 161 ECKYRTGMTIRHAANLLVNMVRKYRTGNHSSKIPNGLSFGTLMAAYDEILGPQLYMLDNTGLLIEGTKFCVGSGAEYAQA 240 (312)
Q Consensus 161 ~~~~g~~i~v~~la~~ls~~l~~~~~~~~~~~rP~gls~~~IIaG~D~~~gp~Ly~iDpsGs~~e~~~~AiGsGs~~a~~ 240 (312)
+++++++++++.+|++|++++|.+|. |++++++|+||||+ .+|+||++||+|++.++++.|+|+|+.++++
T Consensus 106 ~~~~g~~isv~~la~~ls~~l~~~R~--------~~~~v~~iiaG~D~-~gp~Ly~vDp~Gs~~~~~~~a~G~gs~~~~~ 176 (247)
T PTZ00488 106 ELRNGELISVAAASKILANIVWNYKG--------MGLSMGTMICGWDK-KGPGLFYVDNDGTRLHGNMFSCGSGSTYAYG 176 (247)
T ss_pred HHHHCCCCCHHHHHHHHHHHHHhcCC--------CCeeEEEEEEEEeC-CCCEEEEEcCCcceeecCCEEEccCHHHHHH
Confidence 99999999999999999999998654 67777789999997 7899999999999999999999999999999
Q ss_pred HHHhhCCCCCCHHHHHHHHHHHHHHHHHhcCcCCCcEEEEEEECCCeEEeChhHHHHHHHHHhcC
Q psy14210 241 ILDTDYRPDLSEEEAYALATSAIYHACRRDIHSGGCVRLYKINGQGWQQVLSRDVKDIYNDRKEA 305 (312)
Q Consensus 241 ~Le~~y~~~ms~eEAi~la~kaL~~a~~rD~~sg~~ieI~iItk~G~~~l~~~eI~~~l~~~~~~ 305 (312)
+||+.|+++||.|||++++++||+.+.+||..++++++|++|+++|++.++++||+++++.++++
T Consensus 177 ~Le~~~k~dms~eEai~l~~kal~~~~~Rd~~sg~~~ei~iI~k~g~~~l~~~ei~~~l~~~~~~ 241 (247)
T PTZ00488 177 VLDAGFKWDLNDEEAQDLGRRAIYHATFRDAYSGGAINLYHMQKDGWKKISADDCFDLHQKYAAE 241 (247)
T ss_pred HHHhcCcCCCCHHHHHHHHHHHHHHHHHhccccCCCeEEEEEcCCccEECCHHHHHHHHHHHhhh
Confidence 99999999999999999999999999999999999999999999999999999999999988654
No 3
>TIGR03690 20S_bact_beta proteasome, beta subunit, bacterial type. Members of this family are the beta subunit of the 20S proteasome as found in Actinobacteria such as Mycobacterium, Rhodococcus, and Streptomyces. In Streptomyces, maturation during proteasome assembly was shown to remove a 53-amino acid propeptide. Most of the length of the propeptide is not included in this model.
Probab=100.00 E-value=3.9e-44 Score=323.95 Aligned_cols=207 Identities=29% Similarity=0.407 Sum_probs=192.9
Q ss_pred cCceEEEEEcCCeEEEEEcCCccCCcccccccccccccccCCCcccccCccccCCcccCCCccccccccccccccccCCC
Q psy14210 4 TGTTTLGFRYPEGIILATDSRATANDLIVSQKLNKFCQSSLGDSCELLHPVYTGGERCGQSYSQRSHCVAETQQDHFLSP 83 (312)
Q Consensus 4 ~g~t~~~~~~~~gv~~~~d~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (312)
+|||+|||+++||||||+|+|.++|.++.+++.+|
T Consensus 1 ~G~T~igi~~kdgVvlaad~r~~~g~~~~~~~~~K--------------------------------------------- 35 (219)
T TIGR03690 1 HGTTIVALTYPGGVLMAGDRRATQGNMIASRDVEK--------------------------------------------- 35 (219)
T ss_pred CCcEEEEEEECCEEEEEECCccccCcEEEcCCcce---------------------------------------------
Confidence 49999999999999999999999999999999889
Q ss_pred CCCCCccccccCCccccccccccCCccccCCCCCCCCCCCCcceEEEecCeEEEEEeCChhHHHHHHHHHHHHhhhhhhh
Q psy14210 84 PLSQSSQHIISGDSCELLHPVYTGGERCGPFSQSSTVPHNTSFQVIPVSSSILCTLAGNAADCVYWLHSLAKECKGYECK 163 (312)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~dgVv~~~~~~~~~~~~~~~~KI~~I~d~i~~a~sG~~aD~q~l~~~lr~~~~~~~~~ 163 (312)
||+|++|++|+++|+.+|++.+.++++.+++.|+++
T Consensus 36 --------------------------------------------I~~i~~~i~~~~sG~~aD~~~l~~~~r~~~~~~~~~ 71 (219)
T TIGR03690 36 --------------------------------------------VYPTDEYSAVGIAGTAGLAIELVRLFQVELEHYEKI 71 (219)
T ss_pred --------------------------------------------EEEcCCcEEEEecccHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999
Q ss_pred cCCccCHHHHHHHHHHHHHHhccCCCCCCCCCCcccceeeeEEecC-CCCeEEEEcCCc-eEEecCeeeEccChHHHHHH
Q psy14210 164 YRTGMTIRHAANLLVNMVRKYRTGNHSSKIPNGLSFGTLMAAYDEI-LGPQLYMLDNTG-LLIEGTKFCVGSGAEYAQAI 241 (312)
Q Consensus 164 ~g~~i~v~~la~~ls~~l~~~~~~~~~~~rP~gls~~~IIaG~D~~-~gp~Ly~iDpsG-s~~e~~~~AiGsGs~~a~~~ 241 (312)
++++++++.+|++|++++|.++. +.+|||+ +++||||||+. ++|+||++||+| ++..++++|+|+|+.+++++
T Consensus 72 ~~~~i~~~~la~~ls~~~~~~~~---~~~rp~~--v~~iiaG~D~~~~~~~Ly~~Dp~G~~~~~~~~~a~G~g~~~a~~~ 146 (219)
T TIGR03690 72 EGVPLTLDGKANRLAAMVRGNLP---AAMQGLA--VVPLLAGYDLDAGAGRIFSYDVTGGRYEERGYHAVGSGSVFAKGA 146 (219)
T ss_pred HCCCCCHHHHHHHHHHHHHhhhh---hccCCce--EEEEEEEECCCCCCcEEEEEeCCCCeeecCCeEEEeccHHHHHHH
Confidence 99999999999999999998764 3489988 56799999964 579999999999 57777899999999999999
Q ss_pred HHhhCCCCCCHHHHHHHHHHHHHHHHHhcCcCCCc-------EEEEEEECCCeEEeChhHHHHHHHHHhc
Q psy14210 242 LDTDYRPDLSEEEAYALATSAIYHACRRDIHSGGC-------VRLYKINGQGWQQVLSRDVKDIYNDRKE 304 (312)
Q Consensus 242 Le~~y~~~ms~eEAi~la~kaL~~a~~rD~~sg~~-------ieI~iItk~G~~~l~~~eI~~~l~~~~~ 304 (312)
||++|+++||+|||++++++||..+.+||..+++. ++|++|+++|+++++++||+++++++.+
T Consensus 147 Le~~~~~~ms~eeai~l~~~al~~~~~~d~~s~~~~~~~~~~~ei~ii~~~g~~~l~~~ei~~~~~~~~~ 216 (219)
T TIGR03690 147 LKKLYSPDLDEDDALRVAVEALYDAADDDSATGGPDLVRGIYPTVVVITADGARRVPESELEELARAIVE 216 (219)
T ss_pred HHhcCCCCcCHHHHHHHHHHHHHHHHhcccccCCcccccccccEEEEEccCceEEcCHHHHHHHHHHHHh
Confidence 99999999999999999999999999999877764 3999999999999999999999988765
No 4
>cd03758 proteasome_beta_type_2 proteasome beta type-2 subunit. The 20S proteasome, multisubunit proteolytic complex, is the central enzyme of nonlysosomal protein degradation in both the cytosol and nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis.Mammals have 7 alpha and 7 beta proteasome subunits while archaea have one of each.
Probab=100.00 E-value=3.2e-44 Score=318.47 Aligned_cols=190 Identities=25% Similarity=0.378 Sum_probs=181.6
Q ss_pred ceEEEEEcCCeEEEEEcCCccCCcccccccccccccccCCCcccccCccccCCcccCCCccccccccccccccccCCCCC
Q psy14210 6 TTTLGFRYPEGIILATDSRATANDLIVSQKLNKFCQSSLGDSCELLHPVYTGGERCGQSYSQRSHCVAETQQDHFLSPPL 85 (312)
Q Consensus 6 ~t~~~~~~~~gv~~~~d~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (312)
||+||++++||||||+|+|.++|.++.++.++|
T Consensus 2 ~t~igi~~~dgVvlaad~r~~~~~~~~~~~~~K----------------------------------------------- 34 (193)
T cd03758 2 ETLIGIKGKDFVILAADTSAARSILVLKDDEDK----------------------------------------------- 34 (193)
T ss_pred ceEEEEEeCCEEEEEEcCccccCcEEEecCccc-----------------------------------------------
Confidence 899999999999999999999999999999888
Q ss_pred CCCccccccCCccccccccccCCccccCCCCCCCCCCCCcceEEEecCeEEEEEeCChhHHHHHHHHHHHHhhhhhhhcC
Q psy14210 86 SQSSQHIISGDSCELLHPVYTGGERCGPFSQSSTVPHNTSFQVIPVSSSILCTLAGNAADCVYWLHSLAKECKGYECKYR 165 (312)
Q Consensus 86 ~~~~~~~~~~~~~~~~~~~~~dgVv~~~~~~~~~~~~~~~~KI~~I~d~i~~a~sG~~aD~q~l~~~lr~~~~~~~~~~g 165 (312)
||+|+++++|+++|+.+|++.++++++.+++.|+++++
T Consensus 35 ------------------------------------------I~~I~~~i~~~~sG~~aD~~~l~~~~~~~~~~~~~~~~ 72 (193)
T cd03758 35 ------------------------------------------IYKLSDHKLMACSGEAGDRLQFAEYIQKNIQLYKMRNG 72 (193)
T ss_pred ------------------------------------------EEEeCCCeEEEEccchHHHHHHHHHHHHHHHHHHHHhC
Confidence 99999999999999999999999999999999999999
Q ss_pred CccCHHHHHHHHHHHHHHhccCCCCCCCCCCcccceeeeEEecCCCCeEEEEcCCceEEecCeeeEccChHHHHHHHHhh
Q psy14210 166 TGMTIRHAANLLVNMVRKYRTGNHSSKIPNGLSFGTLMAAYDEILGPQLYMLDNTGLLIEGTKFCVGSGAEYAQAILDTD 245 (312)
Q Consensus 166 ~~i~v~~la~~ls~~l~~~~~~~~~~~rP~gls~~~IIaG~D~~~gp~Ly~iDpsGs~~e~~~~AiGsGs~~a~~~Le~~ 245 (312)
++++++.+++++++++|.+++ . .|||+ +++|+||||++.+|+||++||+|++.+++++|+|+|+.+++++||+.
T Consensus 73 ~~i~~~~la~~l~~~~~~~~~--~--~rP~~--~~~li~G~d~~~~p~Ly~~d~~G~~~~~~~~a~G~gs~~~~~~Le~~ 146 (193)
T cd03758 73 YELSPKAAANFTRRELAESLR--S--RTPYQ--VNLLLAGYDKVEGPSLYYIDYLGTLVKVPYAAHGYGAYFCLSILDRY 146 (193)
T ss_pred CCCCHHHHHHHHHHHHHHHhh--c--CCCeE--EEEEEEEEcCCCCcEEEEECCCcceEECCeeEEeecHHHHHHHHHhc
Confidence 999999999999999998876 2 27988 57899999975789999999999999999999999999999999999
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHHhcCcCCCcEEEEEEECCCeEEe
Q psy14210 246 YRPDLSEEEAYALATSAIYHACRRDIHSGGCVRLYKINGQGWQQV 290 (312)
Q Consensus 246 y~~~ms~eEAi~la~kaL~~a~~rD~~sg~~ieI~iItk~G~~~l 290 (312)
|+++||+|||++++++||+.+.+||+.++++++|++|+++|++++
T Consensus 147 ~~~~ms~eeai~l~~~a~~~~~~rd~~~~~~i~i~ii~~~g~~~~ 191 (193)
T cd03758 147 YKPDMTVEEALELMKKCIKELKKRFIINLPNFTVKVVDKDGIRDL 191 (193)
T ss_pred cCCCCCHHHHHHHHHHHHHHHHHhccccCCceEEEEEcCCCeEeC
Confidence 999999999999999999999999999999999999999999864
No 5
>cd03750 proteasome_alpha_type_2 proteasome_alpha_type_2. The 20S proteasome, multisubunit proteolytic complex, is the central enzyme of nonlysosomal protein degradation in both the cytosol and nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis. Mammals have 7 alpha and 7 beta proteasome subunits while archaea have one of each.
Probab=100.00 E-value=4.4e-44 Score=325.07 Aligned_cols=201 Identities=20% Similarity=0.361 Sum_probs=191.7
Q ss_pred ccCceEEEEEcCCeEEEEEcCCccCCcccccccccccccccCCCcccccCccccCCcccCCCccccccccccccccccCC
Q psy14210 3 ITGTTTLGFRYPEGIILATDSRATANDLIVSQKLNKFCQSSLGDSCELLHPVYTGGERCGQSYSQRSHCVAETQQDHFLS 82 (312)
Q Consensus 3 ~~g~t~~~~~~~~gv~~~~d~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (312)
.+|+|+||++++||||||+|+|.+ +.++.++..+|
T Consensus 25 ~~G~t~igik~~dgVvlaad~~~~-~~l~~~~~~~K-------------------------------------------- 59 (227)
T cd03750 25 SSGAPSVGIKAANGVVLATEKKVP-SPLIDESSVHK-------------------------------------------- 59 (227)
T ss_pred HcCCCEEEEEeCCEEEEEEeecCC-ccccCCCCcce--------------------------------------------
Confidence 589999999999999999999998 58888888888
Q ss_pred CCCCCCccccccCCccccccccccCCccccCCCCCCCCCCCCcceEEEecCeEEEEEeCChhHHHHHHHHHHHHhhhhhh
Q psy14210 83 PPLSQSSQHIISGDSCELLHPVYTGGERCGPFSQSSTVPHNTSFQVIPVSSSILCTLAGNAADCVYWLHSLAKECKGYEC 162 (312)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~dgVv~~~~~~~~~~~~~~~~KI~~I~d~i~~a~sG~~aD~q~l~~~lr~~~~~~~~ 162 (312)
|++|++|++|+++|..+|++.++++++.+++.|++
T Consensus 60 ---------------------------------------------I~~I~~~i~~~~sG~~~D~~~l~~~~r~~~~~~~~ 94 (227)
T cd03750 60 ---------------------------------------------VEQITPHIGMVYSGMGPDFRVLVKKARKIAQQYYL 94 (227)
T ss_pred ---------------------------------------------EEEEcCCEEEEEeEcHHhHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999
Q ss_pred hcCCccCHHHHHHHHHHHHHHhccCCCCCCCCCCcccceeeeEEecCCCCeEEEEcCCceEEecCeeeEccChHHHHHHH
Q psy14210 163 KYRTGMTIRHAANLLVNMVRKYRTGNHSSKIPNGLSFGTLMAAYDEILGPQLYMLDNTGLLIEGTKFCVGSGAEYAQAIL 242 (312)
Q Consensus 163 ~~g~~i~v~~la~~ls~~l~~~~~~~~~~~rP~gls~~~IIaG~D~~~gp~Ly~iDpsGs~~e~~~~AiGsGs~~a~~~L 242 (312)
.++++++++.++++|++++|.+++ +++.|||++ ++||+|||+ .+|+||++||+|++.+++++|+|+|+.+++++|
T Consensus 95 ~~~~~~~v~~la~~l~~~~~~~t~--~~~~rP~~v--~~li~G~D~-~g~~Ly~~d~~G~~~~~~~~a~G~g~~~~~~~L 169 (227)
T cd03750 95 VYGEPIPVSQLVREIASVMQEYTQ--SGGVRPFGV--SLLIAGWDE-GGPYLYQVDPSGSYFTWKATAIGKNYSNAKTFL 169 (227)
T ss_pred HHCCCCCHHHHHHHHHHHHHHhcC--CCCCCChhe--EEEEEEEeC-CCCEEEEECCCCCEEeeeEEEECCCCHHHHHHH
Confidence 999999999999999999999999 888999984 689999997 689999999999999999999999999999999
Q ss_pred HhhCCCCCCHHHHHHHHHHHHHHHHHhcCcCCCcEEEEEEECC-CeEEeChhHHHHHH
Q psy14210 243 DTDYRPDLSEEEAYALATSAIYHACRRDIHSGGCVRLYKINGQ-GWQQVLSRDVKDIY 299 (312)
Q Consensus 243 e~~y~~~ms~eEAi~la~kaL~~a~~rD~~sg~~ieI~iItk~-G~~~l~~~eI~~~l 299 (312)
|++|+++||+|||++++++||+.+++||. ++++++|++++++ |+++++++||++++
T Consensus 170 e~~~~~~ms~eeai~l~~~~l~~~~~~~l-~~~~iev~iv~~~~~~~~~~~~ei~~~~ 226 (227)
T cd03750 170 EKRYNEDLELEDAIHTAILTLKEGFEGQM-TEKNIEIGICGETKGFRLLTPAEIKDYL 226 (227)
T ss_pred HhhccCCCCHHHHHHHHHHHHHHHhcccC-CCCcEEEEEEECCCCEEECCHHHHHHHh
Confidence 99999999999999999999999999875 8899999999995 89999999999987
No 6
>cd03761 proteasome_beta_type_5 proteasome beta type-5 subunit. The 20S proteasome, multisubunit proteolytic complex, is the central enzyme of nonlysosomal protein degradation in both the cytosol and nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis. Mammals have 7 alpha and 7 beta proteasome subunits while archaea have one of each.
Probab=100.00 E-value=5.5e-44 Score=315.63 Aligned_cols=188 Identities=46% Similarity=0.808 Sum_probs=180.9
Q ss_pred ceEEEEEcCCeEEEEEcCCccCCcccccccccccccccCCCcccccCccccCCcccCCCccccccccccccccccCCCCC
Q psy14210 6 TTTLGFRYPEGIILATDSRATANDLIVSQKLNKFCQSSLGDSCELLHPVYTGGERCGQSYSQRSHCVAETQQDHFLSPPL 85 (312)
Q Consensus 6 ~t~~~~~~~~gv~~~~d~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (312)
||+|||+++||||||+|+|.++|.++.++..+|
T Consensus 1 tT~igi~~kdgVvla~d~r~~~~~~~~~~~~~K----------------------------------------------- 33 (188)
T cd03761 1 TTTLAFIFQGGVIVAVDSRATAGSYIASQTVKK----------------------------------------------- 33 (188)
T ss_pred CcEEEEEECCEEEEEEcCCccCCcEEEcCCcce-----------------------------------------------
Confidence 799999999999999999999999999988888
Q ss_pred CCCccccccCCccccccccccCCccccCCCCCCCCCCCCcceEEEecCeEEEEEeCChhHHHHHHHHHHHHhhhhhhhcC
Q psy14210 86 SQSSQHIISGDSCELLHPVYTGGERCGPFSQSSTVPHNTSFQVIPVSSSILCTLAGNAADCVYWLHSLAKECKGYECKYR 165 (312)
Q Consensus 86 ~~~~~~~~~~~~~~~~~~~~~dgVv~~~~~~~~~~~~~~~~KI~~I~d~i~~a~sG~~aD~q~l~~~lr~~~~~~~~~~g 165 (312)
||+|++|++|+++|+.+|++.+++++|.+++.|+++++
T Consensus 34 ------------------------------------------I~~I~~~i~~~~sG~~~D~~~l~~~~r~~~~~y~~~~~ 71 (188)
T cd03761 34 ------------------------------------------VIEINPYLLGTMAGGAADCQYWERVLGRECRLYELRNK 71 (188)
T ss_pred ------------------------------------------EEEccCcEEEEeCccHHHHHHHHHHHHHHHHHHHHHHC
Confidence 99999999999999999999999999999999999999
Q ss_pred CccCHHHHHHHHHHHHHHhccCCCCCCCCCCcccceeeeEEecCCCCeEEEEcCCceEEecCeeeEccChHHHHHHHHhh
Q psy14210 166 TGMTIRHAANLLVNMVRKYRTGNHSSKIPNGLSFGTLMAAYDEILGPQLYMLDNTGLLIEGTKFCVGSGAEYAQAILDTD 245 (312)
Q Consensus 166 ~~i~v~~la~~ls~~l~~~~~~~~~~~rP~gls~~~IIaG~D~~~gp~Ly~iDpsGs~~e~~~~AiGsGs~~a~~~Le~~ 245 (312)
++++++.+|+++++++|.+|+ .||+ +++||||||+ ++|+||++||+|++.++++.|+|+|+.+++++||+.
T Consensus 72 ~~i~~~~la~~ls~~l~~~~~------~~~~--v~~li~G~D~-~g~~L~~~dp~G~~~~~~~~a~G~g~~~~~~~Le~~ 142 (188)
T cd03761 72 ERISVAAASKLLSNMLYQYKG------MGLS--MGTMICGWDK-TGPGLYYVDSDGTRLKGDLFSVGSGSTYAYGVLDSG 142 (188)
T ss_pred CCCCHHHHHHHHHHHHHhcCC------CCeE--EEEEEEEEeC-CCCEEEEEcCCceEEEcCeEEEcccHHHHHHHHHhc
Confidence 999999999999999999998 5766 5789999997 799999999999999999999999999999999999
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHHhcCcCCCcEEEEEEECCCeEEeC
Q psy14210 246 YRPDLSEEEAYALATSAIYHACRRDIHSGGCVRLYKINGQGWQQVL 291 (312)
Q Consensus 246 y~~~ms~eEAi~la~kaL~~a~~rD~~sg~~ieI~iItk~G~~~l~ 291 (312)
|+++||+|||++++++||+.+.+||..++++++|++|+++|+++++
T Consensus 143 ~~~~~s~eea~~l~~~~l~~~~~rd~~sg~~~~v~ii~~~g~~~~~ 188 (188)
T cd03761 143 YRYDLSVEEAYDLARRAIYHATHRDAYSGGNVNLYHVREDGWRKIS 188 (188)
T ss_pred CCCCCCHHHHHHHHHHHHHHHHHhcccCCCCeEEEEEcCCceEEcC
Confidence 9999999999999999999999999999999999999999998753
No 7
>PTZ00246 proteasome subunit alpha; Provisional
Probab=100.00 E-value=9.1e-44 Score=328.00 Aligned_cols=212 Identities=20% Similarity=0.317 Sum_probs=200.1
Q ss_pred cccCceEEEEEcCCeEEEEEcCCccCCcccccccccccccccCCCcccccCccccCCcccCCCccccccccccccccccC
Q psy14210 2 FITGTTTLGFRYPEGIILATDSRATANDLIVSQKLNKFCQSSLGDSCELLHPVYTGGERCGQSYSQRSHCVAETQQDHFL 81 (312)
Q Consensus 2 ~~~g~t~~~~~~~~gv~~~~d~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (312)
+.+|+|+|||+++||||||+|+|.+++.++.++..+|
T Consensus 28 v~~g~t~Igik~~dgVvlaad~r~s~~~~~~~~~~~K------------------------------------------- 64 (253)
T PTZ00246 28 INNASLTVGILCKEGVILGADKPISSKLLDPGKINEK------------------------------------------- 64 (253)
T ss_pred HHhCCCEEEEEECCEEEEEEecCCCCcCccCCCCccc-------------------------------------------
Confidence 3579999999999999999999999987777777788
Q ss_pred CCCCCCCccccccCCccccccccccCCccccCCCCCCCCCCCCcceEEEecCeEEEEEeCChhHHHHHHHHHHHHhhhhh
Q psy14210 82 SPPLSQSSQHIISGDSCELLHPVYTGGERCGPFSQSSTVPHNTSFQVIPVSSSILCTLAGNAADCVYWLHSLAKECKGYE 161 (312)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~dgVv~~~~~~~~~~~~~~~~KI~~I~d~i~~a~sG~~aD~q~l~~~lr~~~~~~~ 161 (312)
||+|+++++|+++|+.+|++.+.+.+|.+++.|+
T Consensus 65 ----------------------------------------------I~~I~~~i~~~~sG~~~D~~~l~~~~r~~~~~~~ 98 (253)
T PTZ00246 65 ----------------------------------------------IYKIDSHIFCAVAGLTADANILINQCRLYAQRYR 98 (253)
T ss_pred ----------------------------------------------EEEecCCEEEEEEEcHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999
Q ss_pred hhcCCccCHHHHHHHHHHHHHHhccCCCCCCCCCCcccceeeeEEecCCCCeEEEEcCCceEEecCeeeEccChHHHHHH
Q psy14210 162 CKYRTGMTIRHAANLLVNMVRKYRTGNHSSKIPNGLSFGTLMAAYDEILGPQLYMLDNTGLLIEGTKFCVGSGAEYAQAI 241 (312)
Q Consensus 162 ~~~g~~i~v~~la~~ls~~l~~~~~~~~~~~rP~gls~~~IIaG~D~~~gp~Ly~iDpsGs~~e~~~~AiGsGs~~a~~~ 241 (312)
+.++++++++.+++.++.+++.+++ +++.|||+ +++||||||++.+|+||.+||+|++.+++++|+|+|+.+++++
T Consensus 99 ~~~~~~~~v~~l~~~l~~~~q~~~~--~~~~rP~~--v~~li~G~D~~~gp~Ly~~D~~Gs~~~~~~~a~G~gs~~~~~~ 174 (253)
T PTZ00246 99 YTYGEPQPVEQLVVQICDLKQSYTQ--FGGLRPFG--VSFLFAGYDENLGYQLYHTDPSGNYSGWKATAIGQNNQTAQSI 174 (253)
T ss_pred HHHCCCCCHHHHHHHHHHHHHHhcc--ccCcccCC--EEEEEEEEeCCCCcEEEEECCCCCEecceEEEECCCcHHHHHH
Confidence 9999999999999999999999999 88999998 5689999996578999999999999999999999999999999
Q ss_pred HHhhCCCCCCHHHHHHHHHHHHHHHHHhcCcCCCcEEEEEEECCC------eEEeChhHHHHHHHHHhcCC
Q psy14210 242 LDTDYRPDLSEEEAYALATSAIYHACRRDIHSGGCVRLYKINGQG------WQQVLSRDVKDIYNDRKEAP 306 (312)
Q Consensus 242 Le~~y~~~ms~eEAi~la~kaL~~a~~rD~~sg~~ieI~iItk~G------~~~l~~~eI~~~l~~~~~~~ 306 (312)
||++|+++|++|||++++++||+.+.++|..++++++|++|+++| +++++++||++++..++++.
T Consensus 175 Le~~~~~~ms~eeai~l~~~al~~~~~~d~~s~~~vev~ii~~~~~~~~~~~~~l~~~ei~~~l~~~~~~~ 245 (253)
T PTZ00246 175 LKQEWKEDLTLEQGLLLAAKVLTKSMDSTSPKADKIEVGILSHGETDGEPIQKMLSEKEIAELLKKVTQEY 245 (253)
T ss_pred HHHhccCCCCHHHHHHHHHHHHHHHHhccCCCCCcEEEEEEecCCcCCCCCeEECCHHHHHHHHHHHhhhh
Confidence 999999999999999999999999999999999999999999874 89999999999999987654
No 8
>cd03760 proteasome_beta_type_4 proteasome beta type-4 subunit. The 20S proteasome, multisubunit proteolytic complex, is the central enzyme of nonlysosomal protein degradation in both the cytosol and nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis.Mammals have 7 alpha and 7 beta proteasome subunits while archaea have one of each.
Probab=100.00 E-value=7e-44 Score=317.02 Aligned_cols=193 Identities=22% Similarity=0.255 Sum_probs=181.4
Q ss_pred cCceEEEEEcCCeEEEEEcCCccCCcccccccccccccccCCCcccccCccccCCcccCCCccccccccccccccccCCC
Q psy14210 4 TGTTTLGFRYPEGIILATDSRATANDLIVSQKLNKFCQSSLGDSCELLHPVYTGGERCGQSYSQRSHCVAETQQDHFLSP 83 (312)
Q Consensus 4 ~g~t~~~~~~~~gv~~~~d~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (312)
||||+|||+++||||||+|+|.++|.++.++..+|
T Consensus 1 ~G~T~igi~~kdgVvlaad~r~~~~~~~~~~~~~K--------------------------------------------- 35 (197)
T cd03760 1 TGTSVIAIKYKDGVIIAADTLGSYGSLARFKNVER--------------------------------------------- 35 (197)
T ss_pred CCceEEEEEeCCcEEEEEcCcccccceeecCCCCc---------------------------------------------
Confidence 79999999999999999999999899999998888
Q ss_pred CCCCCccccccCCccccccccccCCccccCCCCCCCCCCCCcceEEEecCeEEEEEeCChhHHHHHHHHHHHHhh-hhhh
Q psy14210 84 PLSQSSQHIISGDSCELLHPVYTGGERCGPFSQSSTVPHNTSFQVIPVSSSILCTLAGNAADCVYWLHSLAKECK-GYEC 162 (312)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~dgVv~~~~~~~~~~~~~~~~KI~~I~d~i~~a~sG~~aD~q~l~~~lr~~~~-~~~~ 162 (312)
||+|++|++|+++|+.+|++.+++++|.+++ .|++
T Consensus 36 --------------------------------------------I~~i~~~i~~~~sG~~~D~~~l~~~~r~~~~~~~~~ 71 (197)
T cd03760 36 --------------------------------------------IFKVGDNTLLGASGDYADFQYLKRLLDQLVIDDECL 71 (197)
T ss_pred --------------------------------------------EEEecCcEEEEeCcchHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999986 5667
Q ss_pred hcCCccCHHHHHHHHHHHHHHhccCCCCCCCCCCcccceeeeEEecCCCCeEEEEcCCceEEecCeeeEccChHHHHHHH
Q psy14210 163 KYRTGMTIRHAANLLVNMVRKYRTGNHSSKIPNGLSFGTLMAAYDEILGPQLYMLDNTGLLIEGTKFCVGSGAEYAQAIL 242 (312)
Q Consensus 163 ~~g~~i~v~~la~~ls~~l~~~~~~~~~~~rP~gls~~~IIaG~D~~~gp~Ly~iDpsGs~~e~~~~AiGsGs~~a~~~L 242 (312)
.++.+++++.+++++++++|.++. ++|||+ +++|+||||++++|+||++||+|++.++++.|+|+|+.+++++|
T Consensus 72 ~~~~~~~~~~la~~i~~~~y~~~~----~~rP~~--v~~iiaG~D~~~gp~Ly~~D~~G~~~~~~~~a~G~g~~~~~~~L 145 (197)
T cd03760 72 DDGHSLSPKEIHSYLTRVLYNRRS----KMNPLW--NTLVVGGVDNEGEPFLGYVDLLGTAYEDPHVATGFGAYLALPLL 145 (197)
T ss_pred hCCCCCCHHHHHHHHHHHHHHHhh----cCCCce--EEEEEEEEcCCCCEEEEEEcCCccEEECCEeEEccHHHHHHHHH
Confidence 899999999999999999876553 689998 46899999975789999999999999999999999999999999
Q ss_pred HhhCCC--CCCHHHHHHHHHHHHHHHHHhcCcCCCcEEEEEEECCCeEEeC
Q psy14210 243 DTDYRP--DLSEEEAYALATSAIYHACRRDIHSGGCVRLYKINGQGWQQVL 291 (312)
Q Consensus 243 e~~y~~--~ms~eEAi~la~kaL~~a~~rD~~sg~~ieI~iItk~G~~~l~ 291 (312)
|++|++ +||+|||++++++||+.+.+||..++++++|++|+++|+++..
T Consensus 146 e~~~~~~~~ms~eea~~l~~~~l~~~~~rd~~~~~~~~i~ii~~~g~~~~~ 196 (197)
T cd03760 146 REAWEKKPDLTEEEARALIEECMKVLYYRDARSINKYQIAVVTKEGVEIEG 196 (197)
T ss_pred HhhcCCCCCCCHHHHHHHHHHHHHHHHHhccccCCceEEEEECCCCEEeCC
Confidence 999999 9999999999999999999999999999999999999988654
No 9
>cd03759 proteasome_beta_type_3 proteasome beta type-3 subunit. The 20S proteasome, multisubunit proteolytic complex, is the central enzyme of nonlysosomal protein degradation in both the cytosol and nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis. Mammals have 7 alpha and 7 beta proteasome subunits while archaea have one of each.
Probab=100.00 E-value=1.2e-43 Score=315.27 Aligned_cols=189 Identities=20% Similarity=0.244 Sum_probs=178.9
Q ss_pred cCceEEEEEcCCeEEEEEcCCccCCcccccccccccccccCCCcccccCccccCCcccCCCccccccccccccccccCCC
Q psy14210 4 TGTTTLGFRYPEGIILATDSRATANDLIVSQKLNKFCQSSLGDSCELLHPVYTGGERCGQSYSQRSHCVAETQQDHFLSP 83 (312)
Q Consensus 4 ~g~t~~~~~~~~gv~~~~d~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (312)
+|||++||+++||||||+|+|.+++.++.++.++|
T Consensus 2 ~G~t~igik~~dgVvlaad~~~~~~~~~~~~~~~K--------------------------------------------- 36 (195)
T cd03759 2 NGGAVVAMAGKDCVAIASDLRLGVQQQTVSTDFQK--------------------------------------------- 36 (195)
T ss_pred CCceEEEEEcCCEEEEEEccccccCCEeEecCCCe---------------------------------------------
Confidence 69999999999999999999999987777877888
Q ss_pred CCCCCccccccCCccccccccccCCccccCCCCCCCCCCCCcceEEEecCeEEEEEeCChhHHHHHHHHHHHHhhhhhhh
Q psy14210 84 PLSQSSQHIISGDSCELLHPVYTGGERCGPFSQSSTVPHNTSFQVIPVSSSILCTLAGNAADCVYWLHSLAKECKGYECK 163 (312)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~dgVv~~~~~~~~~~~~~~~~KI~~I~d~i~~a~sG~~aD~q~l~~~lr~~~~~~~~~ 163 (312)
||+|++|++|+++|..+|++.++++++.+++.|+++
T Consensus 37 --------------------------------------------I~~I~~~i~~~~sG~~~D~~~l~~~~r~~~~~~~~~ 72 (195)
T cd03759 37 --------------------------------------------VFRIGDRLYIGLAGLATDVQTLAQKLRFRVNLYRLR 72 (195)
T ss_pred --------------------------------------------EEEeCCCEEEEccchHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999
Q ss_pred cCCccCHHHHHHHHHHHHHHhccCCCCCCCCCCcccceeeeEEecCCCCeEEEEcCCceEEecC-eeeEccChHHHHHHH
Q psy14210 164 YRTGMTIRHAANLLVNMVRKYRTGNHSSKIPNGLSFGTLMAAYDEILGPQLYMLDNTGLLIEGT-KFCVGSGAEYAQAIL 242 (312)
Q Consensus 164 ~g~~i~v~~la~~ls~~l~~~~~~~~~~~rP~gls~~~IIaG~D~~~gp~Ly~iDpsGs~~e~~-~~AiGsGs~~a~~~L 242 (312)
++++++++.+|+++++++|.++. +||+ +++||||||++++|+||++||+|++.+++ +.|+|+|+.+++++|
T Consensus 73 ~~~~~~~~~la~~l~~~ly~~r~------~P~~--v~~ii~G~D~~~~p~Ly~~D~~G~~~~~~~~~a~G~g~~~~~~~L 144 (195)
T cd03759 73 EEREIKPKTFSSLISSLLYEKRF------GPYF--VEPVVAGLDPDGKPFICTMDLIGCPSIPSDFVVSGTASEQLYGMC 144 (195)
T ss_pred hCCCCCHHHHHHHHHHHHHHhcC------CCce--EEEEEEEEcCCCCEEEEEEcCCCcccccCCEEEEcccHHHHHHHH
Confidence 99999999999999999988654 7988 46899999975689999999999998887 889999999999999
Q ss_pred HhhCCCCCCHHHHHHHHHHHHHHHHHhcCcCCCcEEEEEEECCCeEE
Q psy14210 243 DTDYRPDLSEEEAYALATSAIYHACRRDIHSGGCVRLYKINGQGWQQ 289 (312)
Q Consensus 243 e~~y~~~ms~eEAi~la~kaL~~a~~rD~~sg~~ieI~iItk~G~~~ 289 (312)
|+.|+++||+|||++++++||+.+.+||+.++++++|++|+++|+++
T Consensus 145 e~~~~~~~s~~ea~~l~~~~l~~~~~rd~~~~~~~~i~ii~~~g~~~ 191 (195)
T cd03759 145 ESLWRPDMEPDELFETISQALLSAVDRDALSGWGAVVYIITKDKVTT 191 (195)
T ss_pred HhccCCCCCHHHHHHHHHHHHHHHHhhCcccCCceEEEEEcCCcEEE
Confidence 99999999999999999999999999999999999999999999865
No 10
>cd03757 proteasome_beta_type_1 proteasome beta type-1 subunit. The 20S proteasome, multisubunit proteolytic complex, is the central enzyme of nonlysosomal protein degradation in both the cytosol and nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis. Mammals have 7 alpha and 7 beta proteasome subunits while archaea have one of each.
Probab=100.00 E-value=3e-43 Score=316.57 Aligned_cols=193 Identities=24% Similarity=0.260 Sum_probs=182.1
Q ss_pred CcccCceEEEEEcCCeEEEEEcCCccCCcccccccccccccccCCCcccccCccccCCcccCCCcccccccccccccccc
Q psy14210 1 MFITGTTTLGFRYPEGIILATDSRATANDLIVSQKLNKFCQSSLGDSCELLHPVYTGGERCGQSYSQRSHCVAETQQDHF 80 (312)
Q Consensus 1 ~~~~g~t~~~~~~~~gv~~~~d~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (312)
+..+|||+|||+++||||||+|+|.++|.++.++.++|
T Consensus 4 ~~~~G~Tvigik~~dgVvlaaD~r~~~~~~~~~~~~~K------------------------------------------ 41 (212)
T cd03757 4 YTDNGGTVLAIAGNDFAVIAGDTRLSEGYSILSRDSPK------------------------------------------ 41 (212)
T ss_pred ccCCCccEEEEEcCCEEEEEECCccccCCEeEeCCCCe------------------------------------------
Confidence 34689999999999999999999999998888888888
Q ss_pred CCCCCCCCccccccCCccccccccccCCccccCCCCCCCCCCCCcceEEEecCeEEEEEeCChhHHHHHHHHHHHHhhhh
Q psy14210 81 LSPPLSQSSQHIISGDSCELLHPVYTGGERCGPFSQSSTVPHNTSFQVIPVSSSILCTLAGNAADCVYWLHSLAKECKGY 160 (312)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~dgVv~~~~~~~~~~~~~~~~KI~~I~d~i~~a~sG~~aD~q~l~~~lr~~~~~~ 160 (312)
||+|++|++|+++|..+|++.+.++++.+++.|
T Consensus 42 -----------------------------------------------I~~I~~~i~~~~sG~~aD~~~l~~~~r~~~~~~ 74 (212)
T cd03757 42 -----------------------------------------------IFKLTDKCVLGSSGFQADILALTKRLKARIKMY 74 (212)
T ss_pred -----------------------------------------------EEEcCCCEEEEccchHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999
Q ss_pred hhhcCCccCHHHHHHHHHHHHHHhccCCCCCCCCCCcccceeeeEEecCCCCeEEEEcCCceEEecCeeeEccChHHHHH
Q psy14210 161 ECKYRTGMTIRHAANLLVNMVRKYRTGNHSSKIPNGLSFGTLMAAYDEILGPQLYMLDNTGLLIEGTKFCVGSGAEYAQA 240 (312)
Q Consensus 161 ~~~~g~~i~v~~la~~ls~~l~~~~~~~~~~~rP~gls~~~IIaG~D~~~gp~Ly~iDpsGs~~e~~~~AiGsGs~~a~~ 240 (312)
++.++++++++.+++++++++|.+|. +||+ +++||||||++++|+||++||+|++.+++++|+|+|+.++++
T Consensus 75 ~~~~g~~i~~~~la~~ls~~ly~~R~------~P~~--~~~iiaG~D~~~~p~Ly~~D~~G~~~~~~~~a~G~g~~~~~~ 146 (212)
T cd03757 75 KYSHNKEMSTEAIAQLLSTILYSRRF------FPYY--VFNILAGIDEEGKGVVYSYDPVGSYERETYSAGGSASSLIQP 146 (212)
T ss_pred hHHhCCCCCHHHHHHHHHHHHHhhcC------CCeE--EEEEEEEEcCCCCEEEEEEcCccCeeecCEEEEeecHHHHHH
Confidence 99999999999999999999998654 7988 568999999756799999999999999999999999999999
Q ss_pred HHHhhCC---------CCCCHHHHHHHHHHHHHHHHHhcCcCCCcEEEEEEECCCeEEe
Q psy14210 241 ILDTDYR---------PDLSEEEAYALATSAIYHACRRDIHSGGCVRLYKINGQGWQQV 290 (312)
Q Consensus 241 ~Le~~y~---------~~ms~eEAi~la~kaL~~a~~rD~~sg~~ieI~iItk~G~~~l 290 (312)
+||+.|+ ++||+|||++++++||+.+.+||+.++++++|++|+++|+++.
T Consensus 147 ~Le~~~~~~~~~~~~~~~ms~eea~~l~~~~l~~~~~rd~~sg~~i~i~iit~~g~~~~ 205 (212)
T cd03757 147 LLDNQVGRKNQNNVERTPLSLEEAVSLVKDAFTSAAERDIYTGDSLEIVIITKDGIEEE 205 (212)
T ss_pred HHHHHHHhhccCcCCCCCCCHHHHHHHHHHHHHHHHHhCcccCCCEEEEEEcCCCEEEE
Confidence 9999985 8999999999999999999999999999999999999998654
No 11
>PRK03996 proteasome subunit alpha; Provisional
Probab=100.00 E-value=1.9e-42 Score=316.86 Aligned_cols=205 Identities=24% Similarity=0.377 Sum_probs=193.1
Q ss_pred cccCceEEEEEcCCeEEEEEcCCccCCcccccccccccccccCCCcccccCccccCCcccCCCccccccccccccccccC
Q psy14210 2 FITGTTTLGFRYPEGIILATDSRATANDLIVSQKLNKFCQSSLGDSCELLHPVYTGGERCGQSYSQRSHCVAETQQDHFL 81 (312)
Q Consensus 2 ~~~g~t~~~~~~~~gv~~~~d~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (312)
+.+|+|+||++++||||||+|+|.+ +.++.++..+|
T Consensus 33 v~~G~t~igik~~dgVvlaad~r~~-~~~~~~~~~~K------------------------------------------- 68 (241)
T PRK03996 33 VKRGTTAVGVKTKDGVVLAVDKRIT-SPLIEPSSIEK------------------------------------------- 68 (241)
T ss_pred HHhCCCEEEEEeCCEEEEEEeccCC-CcccCCCccce-------------------------------------------
Confidence 3579999999999999999999999 47777777777
Q ss_pred CCCCCCCccccccCCccccccccccCCccccCCCCCCCCCCCCcceEEEecCeEEEEEeCChhHHHHHHHHHHHHhhhhh
Q psy14210 82 SPPLSQSSQHIISGDSCELLHPVYTGGERCGPFSQSSTVPHNTSFQVIPVSSSILCTLAGNAADCVYWLHSLAKECKGYE 161 (312)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~dgVv~~~~~~~~~~~~~~~~KI~~I~d~i~~a~sG~~aD~q~l~~~lr~~~~~~~ 161 (312)
||+|+++++|+++|+.+|++.++++++.+++.|+
T Consensus 69 ----------------------------------------------I~~I~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~ 102 (241)
T PRK03996 69 ----------------------------------------------IFKIDDHIGAASAGLVADARVLIDRARVEAQINR 102 (241)
T ss_pred ----------------------------------------------EEEEcCCEEEEEcccHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999
Q ss_pred hhcCCccCHHHHHHHHHHHHHHhccCCCCCCCCCCcccceeeeEEecCCCCeEEEEcCCceEEecCeeeEccChHHHHHH
Q psy14210 162 CKYRTGMTIRHAANLLVNMVRKYRTGNHSSKIPNGLSFGTLMAAYDEILGPQLYMLDNTGLLIEGTKFCVGSGAEYAQAI 241 (312)
Q Consensus 162 ~~~g~~i~v~~la~~ls~~l~~~~~~~~~~~rP~gls~~~IIaG~D~~~gp~Ly~iDpsGs~~e~~~~AiGsGs~~a~~~ 241 (312)
++++++++++.+++++++++|.+++ +++.|||++ ++||||||+ .+|+||.+||+|++.+++++|+|+|+.+++++
T Consensus 103 ~~~~~~i~~~~la~~ls~~~~~~~~--~~~~rP~~~--~~ilaG~d~-~gp~Ly~id~~G~~~~~~~~a~G~g~~~~~~~ 177 (241)
T PRK03996 103 LTYGEPIGVETLTKKICDHKQQYTQ--HGGVRPFGV--ALLIAGVDD-GGPRLFETDPSGAYLEYKATAIGAGRDTVMEF 177 (241)
T ss_pred HHhCCCCCHHHHHHHHHHHHHHhcC--CCCccchhe--EEEEEEEeC-CcCEEEEECCCCCeecceEEEECCCcHHHHHH
Confidence 9999999999999999999999998 889999984 689999997 78999999999999999999999999999999
Q ss_pred HHhhCCCCCCHHHHHHHHHHHHHHHHHhcCcCCCcEEEEEEECCC--eEEeChhHHHHHHHHH
Q psy14210 242 LDTDYRPDLSEEEAYALATSAIYHACRRDIHSGGCVRLYKINGQG--WQQVLSRDVKDIYNDR 302 (312)
Q Consensus 242 Le~~y~~~ms~eEAi~la~kaL~~a~~rD~~sg~~ieI~iItk~G--~~~l~~~eI~~~l~~~ 302 (312)
||+.|+++|++|||++++++||+.+.++ ..++++++|++++++| ++.++++|++++++++
T Consensus 178 Le~~~~~~~s~eeai~l~~~al~~~~~~-~~~~~~i~i~ii~~~~~~~~~~~~~ei~~~~~~~ 239 (241)
T PRK03996 178 LEKNYKEDLSLEEAIELALKALAKANEG-KLDPENVEIAYIDVETKKFRKLSVEEIEKYLEKL 239 (241)
T ss_pred HHHhcccCCCHHHHHHHHHHHHHHHhcc-CCCCCcEEEEEEECCCCcEEECCHHHHHHHHHHh
Confidence 9999999999999999999999999875 4688999999999986 9999999999999875
No 12
>TIGR03634 arc_protsome_B proteasome endopeptidase complex, archaeal, beta subunit. This protein family describes the archaeal proteasome beta subunit, homologous to both the alpha subunit and to the alpha and beta subunits of eukaryotic proteasome subunits. This family is universal in the first 29 complete archaeal genomes but occasionally is duplicated.
Probab=100.00 E-value=1.8e-42 Score=304.60 Aligned_cols=185 Identities=36% Similarity=0.528 Sum_probs=178.3
Q ss_pred CceEEEEEcCCeEEEEEcCCccCCcccccccccccccccCCCcccccCccccCCcccCCCccccccccccccccccCCCC
Q psy14210 5 GTTTLGFRYPEGIILATDSRATANDLIVSQKLNKFCQSSLGDSCELLHPVYTGGERCGQSYSQRSHCVAETQQDHFLSPP 84 (312)
Q Consensus 5 g~t~~~~~~~~gv~~~~d~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (312)
|||+|||+++||||||+|+|.++|.++.+++++|
T Consensus 1 G~t~igi~~~dgVvla~d~~~~~~~~i~~~~~~K---------------------------------------------- 34 (185)
T TIGR03634 1 GTTTVGIKCKDGVVLAADKRASMGNFVASKNAKK---------------------------------------------- 34 (185)
T ss_pred CCcEEEEEeCCEEEEEEcCcccCCCEEecCCccc----------------------------------------------
Confidence 8999999999999999999999999999999899
Q ss_pred CCCCccccccCCccccccccccCCccccCCCCCCCCCCCCcceEEEecCeEEEEEeCChhHHHHHHHHHHHHhhhhhhhc
Q psy14210 85 LSQSSQHIISGDSCELLHPVYTGGERCGPFSQSSTVPHNTSFQVIPVSSSILCTLAGNAADCVYWLHSLAKECKGYECKY 164 (312)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~dgVv~~~~~~~~~~~~~~~~KI~~I~d~i~~a~sG~~aD~q~l~~~lr~~~~~~~~~~ 164 (312)
||+|+++++++++|..+|++.+.++++.+++.|++.+
T Consensus 35 -------------------------------------------I~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~ 71 (185)
T TIGR03634 35 -------------------------------------------VFQIDDYIAMTIAGSVGDAQSLVRILKAEAKLYELRR 71 (185)
T ss_pred -------------------------------------------EEEcCCCEEEEcCchHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999
Q ss_pred CCccCHHHHHHHHHHHHHHhccCCCCCCCCCCcccceeeeEEecCCCCeEEEEcCCceEEecCeeeEccChHHHHHHHHh
Q psy14210 165 RTGMTIRHAANLLVNMVRKYRTGNHSSKIPNGLSFGTLMAAYDEILGPQLYMLDNTGLLIEGTKFCVGSGAEYAQAILDT 244 (312)
Q Consensus 165 g~~i~v~~la~~ls~~l~~~~~~~~~~~rP~gls~~~IIaG~D~~~gp~Ly~iDpsGs~~e~~~~AiGsGs~~a~~~Le~ 244 (312)
+++++++.+++++++++|.++. |||+ +++|+||||+ ++|+||.+||+|++.++++.++|+|+.+++++||+
T Consensus 72 ~~~~~~~~~a~~l~~~~~~~~~------rP~~--v~~ivaG~d~-~g~~Ly~~d~~G~~~~~~~~a~G~g~~~~~~~Le~ 142 (185)
T TIGR03634 72 GRPMSVKALATLLSNILNSNRF------FPFI--VQLLVGGVDE-EGPHLYSLDPAGGIIEDDYTATGSGSPVAYGVLED 142 (185)
T ss_pred CCCCCHHHHHHHHHHHHHhcCC------CCeE--EEEEEEEEeC-CCCEEEEECCCCCeEECCEEEEcCcHHHHHHHHHh
Confidence 9999999999999999998754 9988 5689999997 68999999999999999999999999999999999
Q ss_pred hCCCCCCHHHHHHHHHHHHHHHHHhcCcCCCcEEEEEEECCCe
Q psy14210 245 DYRPDLSEEEAYALATSAIYHACRRDIHSGGCVRLYKINGQGW 287 (312)
Q Consensus 245 ~y~~~ms~eEAi~la~kaL~~a~~rD~~sg~~ieI~iItk~G~ 287 (312)
.|+++||++||++++++||+.+.+||..++++++|++|+++|+
T Consensus 143 ~~~~~~s~~ea~~l~~~~l~~~~~r~~~~~~~~~v~ii~~~g~ 185 (185)
T TIGR03634 143 EYREDMSVEEAKKLAVRAIKSAIERDVASGNGIDVAVITKDGV 185 (185)
T ss_pred cCCCCCCHHHHHHHHHHHHHHHHHhcccCCCCEEEEEEcCCCC
Confidence 9999999999999999999999999999999999999999985
No 13
>KOG0175|consensus
Probab=100.00 E-value=2.2e-43 Score=314.94 Aligned_cols=204 Identities=47% Similarity=0.796 Sum_probs=198.5
Q ss_pred cccCceEEEEEcCCeEEEEEcCCccCCcccccccccccccccCCCcccccCccccCCcccCCCccccccccccccccccC
Q psy14210 2 FITGTTTLGFRYPEGIILATDSRATANDLIVSQKLNKFCQSSLGDSCELLHPVYTGGERCGQSYSQRSHCVAETQQDHFL 81 (312)
Q Consensus 2 ~~~g~t~~~~~~~~gv~~~~d~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (312)
+.+|||+|||+|++|||+|+|+|+|+|++|.++.++|
T Consensus 68 ~~hGTTTLAF~f~~GvivAvDSRAs~G~YIasqtv~K------------------------------------------- 104 (285)
T KOG0175|consen 68 FAHGTTTLAFKFKGGVIVAVDSRASAGSYIASQTVKK------------------------------------------- 104 (285)
T ss_pred ecCCceEEEEEecCcEEEEEeccccccceeechhhce-------------------------------------------
Confidence 5689999999999999999999999999999999999
Q ss_pred CCCCCCCccccccCCccccccccccCCccccCCCCCCCCCCCCcceEEEecCeEEEEEeCChhHHHHHHHHHHHHhhhhh
Q psy14210 82 SPPLSQSSQHIISGDSCELLHPVYTGGERCGPFSQSSTVPHNTSFQVIPVSSSILCTLAGNAADCVYWLHSLAKECKGYE 161 (312)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~dgVv~~~~~~~~~~~~~~~~KI~~I~d~i~~a~sG~~aD~q~l~~~lr~~~~~~~ 161 (312)
|++||++++-+++|-+||+|++-+.|..+|++|+
T Consensus 105 ----------------------------------------------VIeIn~ylLGTmAGgAADCqfWer~L~kecRL~e 138 (285)
T KOG0175|consen 105 ----------------------------------------------VIEINPYLLGTMAGGAADCQFWERVLAKECRLHE 138 (285)
T ss_pred ----------------------------------------------eeeechhhhhcccCcchhhHHHHHHHHHHHHHHH
Confidence 8999999999999999999999999999999999
Q ss_pred hhcCCccCHHHHHHHHHHHHHHhccCCCCCCCCCCcccceeeeEEecCCCCeEEEEcCCceEEecCeeeEccChHHHHHH
Q psy14210 162 CKYRTGMTIRHAANLLVNMVRKYRTGNHSSKIPNGLSFGTLMAAYDEILGPQLYMLDNTGLLIEGTKFCVGSGAEYAQAI 241 (312)
Q Consensus 162 ~~~g~~i~v~~la~~ls~~l~~~~~~~~~~~rP~gls~~~IIaG~D~~~gp~Ly~iDpsGs~~e~~~~AiGsGs~~a~~~ 241 (312)
+++++.|+|..++++|++++|+|+- +|++++.+|+|||+ .||.||++|..|+...-+-+++|||+.+|+++
T Consensus 139 LRnkeriSVsaASKllsN~~y~YkG--------mGLsmGtMi~G~Dk-~GP~lyYVDseG~Rl~G~~FSVGSGs~yAYGV 209 (285)
T KOG0175|consen 139 LRNKERISVSAASKLLSNMVYQYKG--------MGLSMGTMIAGWDK-KGPGLYYVDSEGTRLSGDLFSVGSGSTYAYGV 209 (285)
T ss_pred HhcCcceehHHHHHHHHHHHhhccC--------cchhheeeEeeccC-CCCceEEEcCCCCEecCceEeecCCCceeEEe
Confidence 9999999999999999999999998 78999999999998 89999999999999999999999999999999
Q ss_pred HHhhCCCCCCHHHHHHHHHHHHHHHHHhcCcCCCcEEEEEEECCCeEEeChhHHHHHHHHHh
Q psy14210 242 LDTDYRPDLSEEEAYALATSAIYHACRRDIHSGGCVRLYKINGQGWQQVLSRDVKDIYNDRK 303 (312)
Q Consensus 242 Le~~y~~~ms~eEAi~la~kaL~~a~~rD~~sg~~ieI~iItk~G~~~l~~~eI~~~l~~~~ 303 (312)
|++.|++|||.|||.+|+++++..|..||..+|+.++++.|+++||.+++..++.++...+.
T Consensus 210 LDsgYr~dls~eEA~~L~rrAI~hAThRDaySGG~vnlyHv~edGW~~v~~~Dv~~L~~~~~ 271 (285)
T KOG0175|consen 210 LDSGYRYDLSDEEAYDLARRAIYHATHRDAYSGGVVNLYHVKEDGWVKVSNTDVSELHYHYY 271 (285)
T ss_pred eccCCCCCCCHHHHHHHHHHHHHHHHhcccccCceEEEEEECCccceecCCccHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999976654
No 14
>cd03764 proteasome_beta_archeal Archeal proteasome, beta subunit. The 20S proteasome, multisubunit proteolytic complex, is the central enzyme for non-lysosomal protein degradation in both the cytosol and the nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are both members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis. Mammals have 7 alpha and 7 beta proteasome subunits while archaea have one of each.
Probab=100.00 E-value=3.8e-42 Score=303.40 Aligned_cols=188 Identities=34% Similarity=0.530 Sum_probs=180.9
Q ss_pred ceEEEEEcCCeEEEEEcCCccCCcccccccccccccccCCCcccccCccccCCcccCCCccccccccccccccccCCCCC
Q psy14210 6 TTTLGFRYPEGIILATDSRATANDLIVSQKLNKFCQSSLGDSCELLHPVYTGGERCGQSYSQRSHCVAETQQDHFLSPPL 85 (312)
Q Consensus 6 ~t~~~~~~~~gv~~~~d~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (312)
||+|||+++||||||+|+|.++|.++.+++.+|
T Consensus 1 tt~iai~~~dgvvia~d~r~~~g~~~~~~~~~K----------------------------------------------- 33 (188)
T cd03764 1 TTTVGIVCKDGVVLAADKRASMGNFIASKNVKK----------------------------------------------- 33 (188)
T ss_pred CcEEEEEeCCEEEEEEccccccCCEEecCCccc-----------------------------------------------
Confidence 799999999999999999999999999999899
Q ss_pred CCCccccccCCccccccccccCCccccCCCCCCCCCCCCcceEEEecCeEEEEEeCChhHHHHHHHHHHHHhhhhhhhcC
Q psy14210 86 SQSSQHIISGDSCELLHPVYTGGERCGPFSQSSTVPHNTSFQVIPVSSSILCTLAGNAADCVYWLHSLAKECKGYECKYR 165 (312)
Q Consensus 86 ~~~~~~~~~~~~~~~~~~~~~dgVv~~~~~~~~~~~~~~~~KI~~I~d~i~~a~sG~~aD~q~l~~~lr~~~~~~~~~~g 165 (312)
|++|+++++++++|+.+|++.+.+.++.+++.|++.++
T Consensus 34 ------------------------------------------I~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~ 71 (188)
T cd03764 34 ------------------------------------------IFQIDDKIAMTIAGSVGDAQSLVRILKAEARLYELRRG 71 (188)
T ss_pred ------------------------------------------EEEccCCEEEEcCccHHHHHHHHHHHHHHHHHHHHHHC
Confidence 89999999999999999999999999999999999999
Q ss_pred CccCHHHHHHHHHHHHHHhccCCCCCCCCCCcccceeeeEEecCCCCeEEEEcCCceEEecCeeeEccChHHHHHHHHhh
Q psy14210 166 TGMTIRHAANLLVNMVRKYRTGNHSSKIPNGLSFGTLMAAYDEILGPQLYMLDNTGLLIEGTKFCVGSGAEYAQAILDTD 245 (312)
Q Consensus 166 ~~i~v~~la~~ls~~l~~~~~~~~~~~rP~gls~~~IIaG~D~~~gp~Ly~iDpsGs~~e~~~~AiGsGs~~a~~~Le~~ 245 (312)
++++++.+++++++++|.++. |||+ +++|+||||+ ++|+||.+||+|++.++++.|+|+|+.+++++||+.
T Consensus 72 ~~~~~~~l~~~i~~~~~~~~~------~P~~--~~~lvaG~d~-~~~~ly~~D~~G~~~~~~~~a~G~g~~~~~~~L~~~ 142 (188)
T cd03764 72 RPMSIKALATLLSNILNSSKY------FPYI--VQLLIGGVDE-EGPHLYSLDPLGSIIEDKYTATGSGSPYAYGVLEDE 142 (188)
T ss_pred CCCCHHHHHHHHHHHHHhcCC------CCcE--EEEEEEEEeC-CCCEEEEECCCCCEEEcCEEEEcCcHHHHHHHHHhc
Confidence 999999999999999999765 9988 4689999998 789999999999999999999999999999999999
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHHhcCcCCCcEEEEEEECCCeEEeC
Q psy14210 246 YRPDLSEEEAYALATSAIYHACRRDIHSGGCVRLYKINGQGWQQVL 291 (312)
Q Consensus 246 y~~~ms~eEAi~la~kaL~~a~~rD~~sg~~ieI~iItk~G~~~l~ 291 (312)
|+++|++|||++++++||+.+.+||+.++++++|++++++|+++++
T Consensus 143 ~~~~~~~~ea~~l~~~~l~~~~~rd~~~~~~i~i~iv~~~g~~~~~ 188 (188)
T cd03764 143 YKEDMTVEEAKKLAIRAIKSAIERDSASGDGIDVVVITKDGYKELE 188 (188)
T ss_pred CCCCCCHHHHHHHHHHHHHHHHhhcCCCCCcEEEEEECCCCeEeCC
Confidence 9999999999999999999999999999999999999999998764
No 15
>cd03763 proteasome_beta_type_7 proteasome beta type-7 subunit. The 20S proteasome, multisubunit proteolytic complex, is the central enzyme of nonlysosomal protein degradation in both the cytosol and nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis. Mammals have 7 alpha and 7 beta proteasome subunits while archaea have one of each.
Probab=100.00 E-value=6.3e-42 Score=302.48 Aligned_cols=188 Identities=26% Similarity=0.373 Sum_probs=179.7
Q ss_pred ceEEEEEcCCeEEEEEcCCccCCcccccccccccccccCCCcccccCccccCCcccCCCccccccccccccccccCCCCC
Q psy14210 6 TTTLGFRYPEGIILATDSRATANDLIVSQKLNKFCQSSLGDSCELLHPVYTGGERCGQSYSQRSHCVAETQQDHFLSPPL 85 (312)
Q Consensus 6 ~t~~~~~~~~gv~~~~d~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (312)
||+|||+++||||||+|+|.++|.++.++..+|
T Consensus 1 tt~igi~~~dgvvlaad~r~~~g~~~~~~~~~K----------------------------------------------- 33 (189)
T cd03763 1 TTIVGVVFKDGVVLGADTRATEGPIVADKNCEK----------------------------------------------- 33 (189)
T ss_pred CeEEEEEECCeEEEEEcCCcccCceEEcCCccc-----------------------------------------------
Confidence 799999999999999999999999999988888
Q ss_pred CCCccccccCCccccccccccCCccccCCCCCCCCCCCCcceEEEecCeEEEEEeCChhHHHHHHHHHHHHhhhhhhhcC
Q psy14210 86 SQSSQHIISGDSCELLHPVYTGGERCGPFSQSSTVPHNTSFQVIPVSSSILCTLAGNAADCVYWLHSLAKECKGYECKYR 165 (312)
Q Consensus 86 ~~~~~~~~~~~~~~~~~~~~~dgVv~~~~~~~~~~~~~~~~KI~~I~d~i~~a~sG~~aD~q~l~~~lr~~~~~~~~~~g 165 (312)
||+|+++++|+++|..+|++.+.++++.+++.|+++++
T Consensus 34 ------------------------------------------i~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~ 71 (189)
T cd03763 34 ------------------------------------------IHYIAPNIYCCGAGTAADTEAVTNMISSNLELHRLNTG 71 (189)
T ss_pred ------------------------------------------eEEecCCEEEEcCccHHHHHHHHHHHHHHHHHHHHHhC
Confidence 89999999999999999999999999999999999999
Q ss_pred CccCHHHHHHHHHHHHHHhccCCCCCCCCCCcccceeeeEEecCCCCeEEEEcCCceEEecCeeeEccChHHHHHHHHhh
Q psy14210 166 TGMTIRHAANLLVNMVRKYRTGNHSSKIPNGLSFGTLMAAYDEILGPQLYMLDNTGLLIEGTKFCVGSGAEYAQAILDTD 245 (312)
Q Consensus 166 ~~i~v~~la~~ls~~l~~~~~~~~~~~rP~gls~~~IIaG~D~~~gp~Ly~iDpsGs~~e~~~~AiGsGs~~a~~~Le~~ 245 (312)
++++++.+++++++++|.++. ||+ +++|+||||+ ++|+||.+||+|++.++++.|+|+++.+++++||++
T Consensus 72 ~~~~~~~~a~~l~~~l~~~~~-------p~~--v~~ivaG~d~-~g~~ly~~d~~G~~~~~~~~a~G~~~~~~~~~L~~~ 141 (189)
T cd03763 72 RKPRVVTALTMLKQHLFRYQG-------HIG--AALVLGGVDY-TGPHLYSIYPHGSTDKLPFVTMGSGSLAAMSVLEDR 141 (189)
T ss_pred CCCCHHHHHHHHHHHHHHcCC-------ccc--eeEEEEeEcC-CCCEEEEECCCCCEEecCEEEEcCCHHHHHHHHHhh
Confidence 999999999999999997643 877 5789999997 689999999999999999999999999999999999
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHHhcCcCCCcEEEEEEECCCeEEeCh
Q psy14210 246 YRPDLSEEEAYALATSAIYHACRRDIHSGGCVRLYKINGQGWQQVLS 292 (312)
Q Consensus 246 y~~~ms~eEAi~la~kaL~~a~~rD~~sg~~ieI~iItk~G~~~l~~ 292 (312)
|+++||++||++++++||+.+.+||+.++++++|++|+++|+++..|
T Consensus 142 ~~~~ls~~ea~~l~~~~l~~~~~rd~~~~~~~~v~ii~~~g~~~~~~ 188 (189)
T cd03763 142 YKPDMTEEEAKKLVCEAIEAGIFNDLGSGSNVDLCVITKDGVEYLRN 188 (189)
T ss_pred cCCCCCHHHHHHHHHHHHHHHHHhcCcCCCceEEEEEcCCcEEEecC
Confidence 99999999999999999999999999999999999999999998765
No 16
>cd03762 proteasome_beta_type_6 proteasome beta type-6 subunit. The 20S proteasome, multisubunit proteolytic complex, is the central enzyme of nonlysosomal protein degradation in both the cytosol and nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis. Mammals have 7 alpha and 7 beta proteasome subunits while archaea have one of each.
Probab=100.00 E-value=6.4e-42 Score=301.94 Aligned_cols=186 Identities=27% Similarity=0.414 Sum_probs=177.9
Q ss_pred ceEEEEEcCCeEEEEEcCCccCCcccccccccccccccCCCcccccCccccCCcccCCCccccccccccccccccCCCCC
Q psy14210 6 TTTLGFRYPEGIILATDSRATANDLIVSQKLNKFCQSSLGDSCELLHPVYTGGERCGQSYSQRSHCVAETQQDHFLSPPL 85 (312)
Q Consensus 6 ~t~~~~~~~~gv~~~~d~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (312)
||+||++++||||||+|+|.++|.++.+++++|
T Consensus 1 ~t~igi~~~dgVvla~D~r~~~g~~~~~~~~~K----------------------------------------------- 33 (188)
T cd03762 1 TTIIAVEYDGGVVLGADSRTSTGSYVANRVTDK----------------------------------------------- 33 (188)
T ss_pred CeEEEEEECCeEEEEEcccccCCceEEcCCccc-----------------------------------------------
Confidence 799999999999999999999999999888888
Q ss_pred CCCccccccCCccccccccccCCccccCCCCCCCCCCCCcceEEEecCeEEEEEeCChhHHHHHHHHHHHHhhhhhhhcC
Q psy14210 86 SQSSQHIISGDSCELLHPVYTGGERCGPFSQSSTVPHNTSFQVIPVSSSILCTLAGNAADCVYWLHSLAKECKGYECKYR 165 (312)
Q Consensus 86 ~~~~~~~~~~~~~~~~~~~~~dgVv~~~~~~~~~~~~~~~~KI~~I~d~i~~a~sG~~aD~q~l~~~lr~~~~~~~~~~g 165 (312)
||+|++|++|+++|+.+|++.+.++++.+++.|++.++
T Consensus 34 ------------------------------------------i~~i~~~i~~~~sG~~~D~~~l~~~l~~~~~~~~~~~~ 71 (188)
T cd03762 34 ------------------------------------------LTQLHDRIYCCRSGSAADTQAIADYVRYYLDMHSIELG 71 (188)
T ss_pred ------------------------------------------EEEccCCEEEEecccHHHHHHHHHHHHHHHHHhHHhhC
Confidence 99999999999999999999999999999999999999
Q ss_pred CccCHHHHHHHHHHHHHHhccCCCCCCCCCCcccceeeeEEecCCCCeEEEEcCCceEEecCeeeEccChHHHHHHHHhh
Q psy14210 166 TGMTIRHAANLLVNMVRKYRTGNHSSKIPNGLSFGTLMAAYDEILGPQLYMLDNTGLLIEGTKFCVGSGAEYAQAILDTD 245 (312)
Q Consensus 166 ~~i~v~~la~~ls~~l~~~~~~~~~~~rP~gls~~~IIaG~D~~~gp~Ly~iDpsGs~~e~~~~AiGsGs~~a~~~Le~~ 245 (312)
++++++.+++++++++|.+| |||+ +++||||||++++|+||++||+|++.++++.++|+|+.+++++||+.
T Consensus 72 ~~~~~~~~a~~l~~~~~~~~-------~~~~--~~~ii~G~d~~~gp~ly~~d~~G~~~~~~~~~~G~g~~~~~~~Le~~ 142 (188)
T cd03762 72 EPPLVKTAASLFKNLCYNYK-------EMLS--AGIIVAGWDEQNGGQVYSIPLGGMLIRQPFAIGGSGSTYIYGYVDAN 142 (188)
T ss_pred CCCCHHHHHHHHHHHHHhcc-------ccce--eeEEEEEEcCCCCcEEEEECCCCCEEecCEEEEcccHHHHHHHHHhc
Confidence 99999999999999999876 4676 57899999975789999999999999999999999999999999999
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHHhcCcCCCcEEEEEEECCCeEE
Q psy14210 246 YRPDLSEEEAYALATSAIYHACRRDIHSGGCVRLYKINGQGWQQ 289 (312)
Q Consensus 246 y~~~ms~eEAi~la~kaL~~a~~rD~~sg~~ieI~iItk~G~~~ 289 (312)
|+++||++||++++++||+.+.+||+.++++++|++|+++|+++
T Consensus 143 ~~~~~s~~ea~~l~~~al~~~~~rd~~~~~~~~i~~i~~~g~~~ 186 (188)
T cd03762 143 YKPGMTLEECIKFVKNALSLAMSRDGSSGGVIRLVIITKDGVER 186 (188)
T ss_pred CCCCCCHHHHHHHHHHHHHHHHHhccccCCCEEEEEECCCCEEE
Confidence 99999999999999999999999999999999999999999875
No 17
>TIGR03633 arc_protsome_A proteasome endopeptidase complex, archaeal, alpha subunit. This protein family describes the archaeal proteasome alpha subunit, homologous to both the beta subunit and to the alpha and beta subunits of eukaryotic proteasome subunits. This family is universal in the first 29 complete archaeal genomes but occasionally is duplicated.
Probab=100.00 E-value=5.3e-42 Score=310.66 Aligned_cols=197 Identities=26% Similarity=0.433 Sum_probs=185.9
Q ss_pred cccCceEEEEEcCCeEEEEEcCCccCCcccccccccccccccCCCcccccCccccCCcccCCCccccccccccccccccC
Q psy14210 2 FITGTTTLGFRYPEGIILATDSRATANDLIVSQKLNKFCQSSLGDSCELLHPVYTGGERCGQSYSQRSHCVAETQQDHFL 81 (312)
Q Consensus 2 ~~~g~t~~~~~~~~gv~~~~d~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (312)
+.+|+|+|||+++||||||+|+|.+ +.++.++..+|
T Consensus 26 v~~G~tvigi~~~dgvvlaad~r~~-~~~~~~~~~~K------------------------------------------- 61 (224)
T TIGR03633 26 VKRGTTAVGIKTKDGVVLAVDKRIT-SKLVEPSSIEK------------------------------------------- 61 (224)
T ss_pred HHcCCCEEEEEECCEEEEEEeccCC-ccccCCCccce-------------------------------------------
Confidence 4689999999999999999999998 46777777777
Q ss_pred CCCCCCCccccccCCccccccccccCCccccCCCCCCCCCCCCcceEEEecCeEEEEEeCChhHHHHHHHHHHHHhhhhh
Q psy14210 82 SPPLSQSSQHIISGDSCELLHPVYTGGERCGPFSQSSTVPHNTSFQVIPVSSSILCTLAGNAADCVYWLHSLAKECKGYE 161 (312)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~dgVv~~~~~~~~~~~~~~~~KI~~I~d~i~~a~sG~~aD~q~l~~~lr~~~~~~~ 161 (312)
|++|+++++|++||+.+|++.+.+.++.+++.|+
T Consensus 62 ----------------------------------------------I~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~ 95 (224)
T TIGR03633 62 ----------------------------------------------IFKIDDHIGAATSGLVADARVLIDRARIEAQINR 95 (224)
T ss_pred ----------------------------------------------EEEECCCEEEEEeecHHhHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999
Q ss_pred hhcCCccCHHHHHHHHHHHHHHhccCCCCCCCCCCcccceeeeEEecCCCCeEEEEcCCceEEecCeeeEccChHHHHHH
Q psy14210 162 CKYRTGMTIRHAANLLVNMVRKYRTGNHSSKIPNGLSFGTLMAAYDEILGPQLYMLDNTGLLIEGTKFCVGSGAEYAQAI 241 (312)
Q Consensus 162 ~~~g~~i~v~~la~~ls~~l~~~~~~~~~~~rP~gls~~~IIaG~D~~~gp~Ly~iDpsGs~~e~~~~AiGsGs~~a~~~ 241 (312)
++++++++++.+++++++++|.+++ .++.|||+ +++||||||+ ++|+||.+||.|++.+++++|+|+|+.+++++
T Consensus 96 ~~~~~~~~~~~la~~ls~~l~~~~~--~~~~rP~~--v~~ll~G~d~-~~~~Ly~~D~~G~~~~~~~~a~G~g~~~~~~~ 170 (224)
T TIGR03633 96 LTYGEPIDVETLAKKICDLKQQYTQ--HGGVRPFG--VALLIAGVDD-GGPRLFETDPSGALLEYKATAIGAGRQAVTEF 170 (224)
T ss_pred HHHCCCCCHHHHHHHHHHHHHHhcC--CCCccccc--eEEEEEEEeC-CcCEEEEECCCCCeecceEEEECCCCHHHHHH
Confidence 9999999999999999999999998 88899998 5689999996 78999999999999999999999999999999
Q ss_pred HHhhCCCCCCHHHHHHHHHHHHHHHHHhcCcCCCcEEEEEEECCC--eEEeChhH
Q psy14210 242 LDTDYRPDLSEEEAYALATSAIYHACRRDIHSGGCVRLYKINGQG--WQQVLSRD 294 (312)
Q Consensus 242 Le~~y~~~ms~eEAi~la~kaL~~a~~rD~~sg~~ieI~iItk~G--~~~l~~~e 294 (312)
||+.|+++|++|||++++++||+.+.+ |+.+++.++|++|+++| ++.++++|
T Consensus 171 L~~~~~~~~~~eeai~l~~~al~~~~~-d~~~~~~i~i~ii~~~g~~~~~~~~~~ 224 (224)
T TIGR03633 171 LEKEYREDLSLDEAIELALKALYSAVE-DKLTPENVEVAYITVEDKKFRKLSVEE 224 (224)
T ss_pred HHHhccCCCCHHHHHHHHHHHHHHHhc-ccCCCCcEEEEEEEcCCCcEEECCCCC
Confidence 999999999999999999999999887 88899999999999987 89888775
No 18
>cd03752 proteasome_alpha_type_4 proteasome_alpha_type_4. The 20S proteasome, multisubunit proteolytic complex, is the central enzyme of nonlysosomal protein degradation in both the cytosol and nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis. Mammals have 7 alpha and 7 beta proteasome subunits while archaea have one of each.
Probab=100.00 E-value=3.9e-41 Score=302.94 Aligned_cols=188 Identities=23% Similarity=0.342 Sum_probs=178.8
Q ss_pred cccCceEEEEEcCCeEEEEEcCCccCCcccccccccccccccCCCcccccCccccCCcccCCCccccccccccccccccC
Q psy14210 2 FITGTTTLGFRYPEGIILATDSRATANDLIVSQKLNKFCQSSLGDSCELLHPVYTGGERCGQSYSQRSHCVAETQQDHFL 81 (312)
Q Consensus 2 ~~~g~t~~~~~~~~gv~~~~d~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (312)
+.+|+|+|||+++||||||+|+|.+++.++.++..+|
T Consensus 26 ~~~G~t~igi~~~dgVvla~d~r~~~~~~~~~~~~~K------------------------------------------- 62 (213)
T cd03752 26 ISHAGTCLGILAKDGIVLAAEKKVTSKLLDQSFSSEK------------------------------------------- 62 (213)
T ss_pred HhcCCCEEEEEeCCEEEEEEEeccCCcccCCCcCcce-------------------------------------------
Confidence 3579999999999999999999999977777778888
Q ss_pred CCCCCCCccccccCCccccccccccCCccccCCCCCCCCCCCCcceEEEecCeEEEEEeCChhHHHHHHHHHHHHhhhhh
Q psy14210 82 SPPLSQSSQHIISGDSCELLHPVYTGGERCGPFSQSSTVPHNTSFQVIPVSSSILCTLAGNAADCVYWLHSLAKECKGYE 161 (312)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~dgVv~~~~~~~~~~~~~~~~KI~~I~d~i~~a~sG~~aD~q~l~~~lr~~~~~~~ 161 (312)
||+|++|++|++||+.+|++.+.+++|.+++.|+
T Consensus 63 ----------------------------------------------I~~I~~~i~~~~sG~~~D~~~l~~~~r~~~~~~~ 96 (213)
T cd03752 63 ----------------------------------------------IYKIDDHIACAVAGITSDANILINYARLIAQRYL 96 (213)
T ss_pred ----------------------------------------------EEEecCCEEEEEecChHhHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999
Q ss_pred hhcCCccCHHHHHHHHHHHHHHhccCCCCCCCCCCcccceeeeEEecCCCCeEEEEcCCceEEecCeeeEccChHHHHHH
Q psy14210 162 CKYRTGMTIRHAANLLVNMVRKYRTGNHSSKIPNGLSFGTLMAAYDEILGPQLYMLDNTGLLIEGTKFCVGSGAEYAQAI 241 (312)
Q Consensus 162 ~~~g~~i~v~~la~~ls~~l~~~~~~~~~~~rP~gls~~~IIaG~D~~~gp~Ly~iDpsGs~~e~~~~AiGsGs~~a~~~ 241 (312)
++++++++++.+++.++.+++.+++ +++.|||+ +++|++|||++.+|+||.+||+|++.+++++|+|+++.+++++
T Consensus 97 ~~~~~~i~v~~la~~ls~~~~~~t~--~~~~RP~~--v~~li~G~D~~~g~~ly~~d~~G~~~~~~~~a~G~gs~~~~~~ 172 (213)
T cd03752 97 YSYQEPIPVEQLVQRLCDIKQGYTQ--YGGLRPFG--VSFLYAGWDKHYGFQLYQSDPSGNYSGWKATAIGNNNQAAQSL 172 (213)
T ss_pred HHHCCCCCHHHHHHHHHHHHHHHhc--CCCcccce--eEEEEEEEeCCCCCEEEEECCCCCeeeeeEEEECCCcHHHHHH
Confidence 9999999999999999999999998 89999998 5689999997578999999999999999999999999999999
Q ss_pred HHhhCCCCCCHHHHHHHHHHHHHHHHHhcCcCCCcEEEEEE
Q psy14210 242 LDTDYRPDLSEEEAYALATSAIYHACRRDIHSGGCVRLYKI 282 (312)
Q Consensus 242 Le~~y~~~ms~eEAi~la~kaL~~a~~rD~~sg~~ieI~iI 282 (312)
||++|+++||+|||++++++||..+.+||..++.+++|+++
T Consensus 173 Le~~y~~~ms~eea~~l~~~al~~~~~r~~~~~~~~ei~~~ 213 (213)
T cd03752 173 LKQDYKDDMTLEEALALAVKVLSKTMDSTKLTSEKLEFATL 213 (213)
T ss_pred HHHhccCCCCHHHHHHHHHHHHHHHHhccCCCCCcEEEEEC
Confidence 99999999999999999999999999999889999999875
No 19
>cd01912 proteasome_beta proteasome beta subunit. The 20S proteasome, multisubunit proteolytic complex, is the central enzyme of nonlysosomal protein degradation in both the cytosol and nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis. Mammals have 7 alpha and 7 beta proteasome subunits while archaea have one of each.
Probab=100.00 E-value=1e-40 Score=293.73 Aligned_cols=188 Identities=37% Similarity=0.568 Sum_probs=180.1
Q ss_pred ceEEEEEcCCeEEEEEcCCccCCcccccccccccccccCCCcccccCccccCCcccCCCccccccccccccccccCCCCC
Q psy14210 6 TTTLGFRYPEGIILATDSRATANDLIVSQKLNKFCQSSLGDSCELLHPVYTGGERCGQSYSQRSHCVAETQQDHFLSPPL 85 (312)
Q Consensus 6 ~t~~~~~~~~gv~~~~d~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (312)
||+||++++||||||+|+|.++|.++.++..+|
T Consensus 1 tt~i~i~~~dgVvla~d~~~~~~~~~~~~~~~K----------------------------------------------- 33 (189)
T cd01912 1 TTIVGIKGKDGVVLAADTRASAGSLVASRNFDK----------------------------------------------- 33 (189)
T ss_pred CcEEEEEeCCEEEEEEcCCcccCcEEEcCCcCc-----------------------------------------------
Confidence 799999999999999999999998887888888
Q ss_pred CCCccccccCCccccccccccCCccccCCCCCCCCCCCCcceEEEecCeEEEEEeCChhHHHHHHHHHHHHhhhhhhhcC
Q psy14210 86 SQSSQHIISGDSCELLHPVYTGGERCGPFSQSSTVPHNTSFQVIPVSSSILCTLAGNAADCVYWLHSLAKECKGYECKYR 165 (312)
Q Consensus 86 ~~~~~~~~~~~~~~~~~~~~~dgVv~~~~~~~~~~~~~~~~KI~~I~d~i~~a~sG~~aD~q~l~~~lr~~~~~~~~~~g 165 (312)
||+|+++++++++|+.+|++.+.++++.+++.|++.++
T Consensus 34 ------------------------------------------i~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~ 71 (189)
T cd01912 34 ------------------------------------------IFKISDNILLGTAGSAADTQALTRLLKRNLRLYELRNG 71 (189)
T ss_pred ------------------------------------------EEEccCCEEEEccccHHHHHHHHHHHHHHHHHHHHHhC
Confidence 99999999999999999999999999999999999999
Q ss_pred CccCHHHHHHHHHHHHHHhccCCCCCCCCCCcccceeeeEEecCCCCeEEEEcCCceEEecCeeeEccChHHHHHHHHhh
Q psy14210 166 TGMTIRHAANLLVNMVRKYRTGNHSSKIPNGLSFGTLMAAYDEILGPQLYMLDNTGLLIEGTKFCVGSGAEYAQAILDTD 245 (312)
Q Consensus 166 ~~i~v~~la~~ls~~l~~~~~~~~~~~rP~gls~~~IIaG~D~~~gp~Ly~iDpsGs~~e~~~~AiGsGs~~a~~~Le~~ 245 (312)
++++++.+++++++++|.+++ |||+ +++||||||++++|+||.+||+|++.+++++++|+++.+++++||+.
T Consensus 72 ~~~~~~~l~~~l~~~~~~~~~------~P~~--~~~iv~G~d~~~~~~l~~id~~G~~~~~~~~a~G~~~~~~~~~Le~~ 143 (189)
T cd01912 72 RELSVKAAANLLSNILYSYRG------FPYY--VSLIVGGVDKGGGPFLYYVDPLGSLIEAPFVATGSGSKYAYGILDRG 143 (189)
T ss_pred CCCCHHHHHHHHHHHHHhcCC------CCeE--EEEEEEEEcCCCCeEEEEECCCCCeEecCEEEEcccHHHHHHHHHhc
Confidence 999999999999999999887 8988 56899999976789999999999999999999999999999999999
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHHhcCcCCCcEEEEEEECCCeEEe
Q psy14210 246 YRPDLSEEEAYALATSAIYHACRRDIHSGGCVRLYKINGQGWQQV 290 (312)
Q Consensus 246 y~~~ms~eEAi~la~kaL~~a~~rD~~sg~~ieI~iItk~G~~~l 290 (312)
|+++||+|||++++++||+.+.+||+.++++++|++|+++|++..
T Consensus 144 ~~~~~s~~ea~~~~~~~l~~~~~~d~~~~~~~~v~vi~~~g~~~~ 188 (189)
T cd01912 144 YKPDMTLEEAVELVKKAIDSAIERDLSSGGGVDVAVITKDGVEEL 188 (189)
T ss_pred cCCCCCHHHHHHHHHHHHHHHHHhcCccCCcEEEEEECCCCEEEc
Confidence 999999999999999999999999999999999999999998754
No 20
>cd03765 proteasome_beta_bacterial Bacterial proteasome, beta subunit. The 20S proteasome, multisubunit proteolytic complex, is the central enzyme of nonlysosomal protein degradation in both the cytosol and nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis. Mammals have 7 alpha and 7 beta proteasome subunits while archaea have one of each.
Probab=100.00 E-value=2.3e-40 Score=302.03 Aligned_cols=158 Identities=21% Similarity=0.224 Sum_probs=144.9
Q ss_pred EEEec----CeEEEEEeCChhHHHHHHHHHHHHhhhhhhhcCC-ccCHHHHHHHHHHHHHHhccCCCCC-----CCCCCc
Q psy14210 128 VIPVS----SSILCTLAGNAADCVYWLHSLAKECKGYECKYRT-GMTIRHAANLLVNMVRKYRTGNHSS-----KIPNGL 197 (312)
Q Consensus 128 I~~I~----d~i~~a~sG~~aD~q~l~~~lr~~~~~~~~~~g~-~i~v~~la~~ls~~l~~~~~~~~~~-----~rP~gl 197 (312)
||+|+ +|++|+.||+.||++.+++++|.+++.|++++++ +++++.+|++++++++.+.+. +.+ .|||+
T Consensus 33 I~~I~~~~d~~I~~~~sG~~aD~~~l~~~~r~~~~~~~~~~g~~~~~v~~la~~i~~~l~~~~~q-~~~~~~~~~rp~g- 110 (236)
T cd03765 33 MFVFSVPGERVIVLLTAGNLATTQAVISLLQRDLEDPEETNLLNAPTMFDAARYVGETLREVQEQ-DREALKKAGIDFS- 110 (236)
T ss_pred EEEecCCCCCEEEEEcCCcHHHHHHHHHHHHHHHHhhHHhhCCCCCCHHHHHHHHHHHHHHHHhh-cccccccCCcceE-
Confidence 99998 8999999999999999999999999999999999 899999999999997654431 443 48998
Q ss_pred ccceeeeEEecCCCCeEEEEcCCceEEec----CeeeEccChHHHHHHHHhhCCCCCCHHHHHHHHHHHHHHHHHhcCcC
Q psy14210 198 SFGTLMAAYDEILGPQLYMLDNTGLLIEG----TKFCVGSGAEYAQAILDTDYRPDLSEEEAYALATSAIYHACRRDIHS 273 (312)
Q Consensus 198 s~~~IIaG~D~~~gp~Ly~iDpsGs~~e~----~~~AiGsGs~~a~~~Le~~y~~~ms~eEAi~la~kaL~~a~~rD~~s 273 (312)
+++||||||++.||+||++||+|++.++ +++|+|. +.+++++||++|+++||+|||++++++||..+++||..+
T Consensus 111 -vslIigG~D~~~Gp~LY~idpsG~~~e~~a~~~~~AiG~-~~~a~~~Lek~yk~~ms~eeai~la~~al~~a~~rd~~s 188 (236)
T cd03765 111 -ASFILGGQIKGEEPRLFLIYPQGNFIEATPDTPFLQIGE-TKYGKPILDRVITPDTSLEDAAKCALVSMDSTMRSNLSV 188 (236)
T ss_pred -EEEEEEeEECCCCCEEEEECCCCCEEeecCCCceeeeCC-chhhHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHhcCCC
Confidence 5789999996578999999999999999 4589996 799999999999999999999999999999999999999
Q ss_pred CCcEEEEEEECCCeEE
Q psy14210 274 GGCVRLYKINGQGWQQ 289 (312)
Q Consensus 274 g~~ieI~iItk~G~~~ 289 (312)
+++|+|++|+++|++.
T Consensus 189 g~~iev~vI~k~G~~~ 204 (236)
T cd03765 189 GPPLDLLVYERDSLQV 204 (236)
T ss_pred CCCEEEEEEECCCeee
Confidence 9999999999999765
No 21
>cd03751 proteasome_alpha_type_3 proteasome_alpha_type_3. The 20S proteasome, multisubunit proteolytic complex, is the central enzyme of nonlysosomal protein degradation in both the cytosol and nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis. Mammals have 7 alpha and 7 beta proteasome subunits while archaea have one of each.
Probab=100.00 E-value=2.3e-40 Score=297.97 Aligned_cols=185 Identities=24% Similarity=0.318 Sum_probs=174.1
Q ss_pred ccCceEEEEEcCCeEEEEEcCCccCCcccccccccccccccCCCcccccCccccCCcccCCCccccccccccccccccCC
Q psy14210 3 ITGTTTLGFRYPEGIILATDSRATANDLIVSQKLNKFCQSSLGDSCELLHPVYTGGERCGQSYSQRSHCVAETQQDHFLS 82 (312)
Q Consensus 3 ~~g~t~~~~~~~~gv~~~~d~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (312)
.+|+|+|||+++||||||+|+|.++ .++..+..+|
T Consensus 28 ~~G~tvIgik~kdgVvla~d~r~~~-~~~~~~~~~K-------------------------------------------- 62 (212)
T cd03751 28 ENSGTAIGIRCKDGVVLAVEKLVTS-KLYEPGSNKR-------------------------------------------- 62 (212)
T ss_pred hcCCCEEEEEeCCEEEEEEEccccc-cccCcchhcc--------------------------------------------
Confidence 5799999999999999999999986 7777777777
Q ss_pred CCCCCCccccccCCccccccccccCCccccCCCCCCCCCCCCcceEEEecCeEEEEEeCChhHHHHHHHHHHHHhhhhhh
Q psy14210 83 PPLSQSSQHIISGDSCELLHPVYTGGERCGPFSQSSTVPHNTSFQVIPVSSSILCTLAGNAADCVYWLHSLAKECKGYEC 162 (312)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~dgVv~~~~~~~~~~~~~~~~KI~~I~d~i~~a~sG~~aD~q~l~~~lr~~~~~~~~ 162 (312)
||+|++|++|+++|+.+|++.+.++++.+++.|++
T Consensus 63 ---------------------------------------------I~~I~~~i~~~~sG~~~D~~~l~~~~r~~~~~y~~ 97 (212)
T cd03751 63 ---------------------------------------------IFNVDRHIGIAVAGLLADGRHLVSRAREEAENYRD 97 (212)
T ss_pred ---------------------------------------------eeEecCcEEEEEEEChHhHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999
Q ss_pred hcCCccCHHHHHHHHHHHHHHhccCCCCCCCCCCcccceeeeEEecCCCCeEEEEcCCceEEecCeeeEccChHHHHHHH
Q psy14210 163 KYRTGMTIRHAANLLVNMVRKYRTGNHSSKIPNGLSFGTLMAAYDEILGPQLYMLDNTGLLIEGTKFCVGSGAEYAQAIL 242 (312)
Q Consensus 163 ~~g~~i~v~~la~~ls~~l~~~~~~~~~~~rP~gls~~~IIaG~D~~~gp~Ly~iDpsGs~~e~~~~AiGsGs~~a~~~L 242 (312)
.++++++++.++++|++++|.+++ ++++|||+ +++||||||+ .+|+||++||+|++.+++++|+|+|+.+++++|
T Consensus 98 ~~~~~~~v~~la~~ls~~~~~~t~--~~~~rP~~--vs~li~G~D~-~gp~Ly~~D~~Gs~~~~~~~a~G~g~~~a~~~L 172 (212)
T cd03751 98 NYGTPIPVKVLADRVAMYMHAYTL--YSSVRPFG--CSVLLGGYDS-DGPQLYMIEPSGVSYGYFGCAIGKGKQAAKTEL 172 (212)
T ss_pred HHCCCCCHHHHHHHHHHHHHHhcc--CCCcCCce--EEEEEEEEeC-CcCEEEEECCCCCEEeeEEEEECCCCHHHHHHH
Confidence 999999999999999999999999 88999998 4689999997 689999999999999999999999999999999
Q ss_pred HhhCCCCCCHHHHHHHHHHHHHHHHHhcCcCCCcEEEEEE
Q psy14210 243 DTDYRPDLSEEEAYALATSAIYHACRRDIHSGGCVRLYKI 282 (312)
Q Consensus 243 e~~y~~~ms~eEAi~la~kaL~~a~~rD~~sg~~ieI~iI 282 (312)
|++|+++||+|||+++++++|+.+++.+...+.++||+++
T Consensus 173 ek~~~~dms~eeai~l~~~~L~~~~~~~~~~~~~iei~~~ 212 (212)
T cd03751 173 EKLKFSELTCREAVKEAAKIIYIVHDEIKDKAFELELSWV 212 (212)
T ss_pred HHhccCCCCHHHHHHHHHHHHHHHhhccCCCCccEEEEEC
Confidence 9999999999999999999999999866567789999874
No 22
>cd03755 proteasome_alpha_type_7 proteasome_alpha_type_7. The 20S proteasome, multisubunit proteolytic complex, is the central enzyme of nonlysosomal protein degradation in both the cytosol and nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis. Mammals have 7 alpha and 7 beta proteasome subunits while archaea have one of each.
Probab=100.00 E-value=2.8e-40 Score=296.13 Aligned_cols=184 Identities=18% Similarity=0.357 Sum_probs=172.3
Q ss_pred cccCceEEEEEcCCeEEEEEcCCccCCcccccccccccccccCCCcccccCccccCCcccCCCccccccccccccccccC
Q psy14210 2 FITGTTTLGFRYPEGIILATDSRATANDLIVSQKLNKFCQSSLGDSCELLHPVYTGGERCGQSYSQRSHCVAETQQDHFL 81 (312)
Q Consensus 2 ~~~g~t~~~~~~~~gv~~~~d~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (312)
+.+|+|+|||+++||||||+|+|.+. .++.++..+|
T Consensus 24 v~~G~t~Igik~~dgVvlaad~~~~~-~~~~~~~~~K------------------------------------------- 59 (207)
T cd03755 24 VRKGTTAVGVRGKDCVVLGVEKKSVA-KLQDPRTVRK------------------------------------------- 59 (207)
T ss_pred HHcCCCEEEEEeCCEEEEEEecCCCC-cccCCCccCc-------------------------------------------
Confidence 46899999999999999999999766 5766666677
Q ss_pred CCCCCCCccccccCCccccccccccCCccccCCCCCCCCCCCCcceEEEecCeEEEEEeCChhHHHHHHHHHHHHhhhhh
Q psy14210 82 SPPLSQSSQHIISGDSCELLHPVYTGGERCGPFSQSSTVPHNTSFQVIPVSSSILCTLAGNAADCVYWLHSLAKECKGYE 161 (312)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~dgVv~~~~~~~~~~~~~~~~KI~~I~d~i~~a~sG~~aD~q~l~~~lr~~~~~~~ 161 (312)
|++|++|++|+++|+.+|++.+.++++.+++.|+
T Consensus 60 ----------------------------------------------I~~I~~~i~~~~sG~~~D~~~l~~~~r~~~~~~~ 93 (207)
T cd03755 60 ----------------------------------------------ICMLDDHVCLAFAGLTADARVLINRARLECQSHR 93 (207)
T ss_pred ----------------------------------------------EEEECCCEEEEEecchhhHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999
Q ss_pred hhcCCccCHHHHHHHHHHHHHHhccCCCCCCCCCCcccceeeeEEecCCCCeEEEEcCCceEEecCeeeEccChHHHHHH
Q psy14210 162 CKYRTGMTIRHAANLLVNMVRKYRTGNHSSKIPNGLSFGTLMAAYDEILGPQLYMLDNTGLLIEGTKFCVGSGAEYAQAI 241 (312)
Q Consensus 162 ~~~g~~i~v~~la~~ls~~l~~~~~~~~~~~rP~gls~~~IIaG~D~~~gp~Ly~iDpsGs~~e~~~~AiGsGs~~a~~~ 241 (312)
++++++++++.+++++++++|.+++ +++.|||++ ++||+|||++++|+||++||+|++.+++++|+|+|+.+++++
T Consensus 94 ~~~~~~i~~~~la~~ls~~~~~y~~--~~~~rP~~v--s~ii~G~D~~~~p~Ly~iD~~G~~~~~~~~a~G~gs~~~~~~ 169 (207)
T cd03755 94 LTVEDPVTVEYITRYIAGLQQRYTQ--SGGVRPFGI--STLIVGFDPDGTPRLYQTDPSGTYSAWKANAIGRNSKTVREF 169 (207)
T ss_pred HHHCCCCCHHHHHHHHHHHHHHHhc--ccCccccee--EEEEEEEeCCCCeEEEEECCCcCEEcceEEEECCCCHHHHHH
Confidence 9999999999999999999999998 888999984 689999997569999999999999999999999999999999
Q ss_pred HHhhCCCCCCHHHHHHHHHHHHHHHHHhcCcCCCcEEEEEE
Q psy14210 242 LDTDYRPDLSEEEAYALATSAIYHACRRDIHSGGCVRLYKI 282 (312)
Q Consensus 242 Le~~y~~~ms~eEAi~la~kaL~~a~~rD~~sg~~ieI~iI 282 (312)
||++|+++||+|||++++++||..+.+ .++.++||+++
T Consensus 170 Le~~~~~~ms~eeai~l~~~~l~~~~~---~~~~~~e~~~~ 207 (207)
T cd03755 170 LEKNYKEEMTRDDTIKLAIKALLEVVQ---SGSKNIELAVM 207 (207)
T ss_pred HHhhccCCCCHHHHHHHHHHHHHHHhC---CCCCeEEEEEC
Confidence 999999999999999999999999986 57889999875
No 23
>cd03756 proteasome_alpha_archeal proteasome_alpha_archeal. The 20S proteasome, multisubunit proteolytic complex, is the central enzyme of nonlysosomal protein degradation in both the cytosol and nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis. Mammals have 7 alpha and 7 beta proteasome subunits while archaea have one of each.
Probab=100.00 E-value=4.4e-40 Score=295.58 Aligned_cols=186 Identities=26% Similarity=0.420 Sum_probs=176.3
Q ss_pred cccCceEEEEEcCCeEEEEEcCCccCCcccccccccccccccCCCcccccCccccCCcccCCCccccccccccccccccC
Q psy14210 2 FITGTTTLGFRYPEGIILATDSRATANDLIVSQKLNKFCQSSLGDSCELLHPVYTGGERCGQSYSQRSHCVAETQQDHFL 81 (312)
Q Consensus 2 ~~~g~t~~~~~~~~gv~~~~d~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (312)
+.+|+|+||++++||||||+|+|.+ +.++.+++.+|
T Consensus 25 v~~G~t~igik~~dgvvla~d~~~~-~~~~~~~~~~K------------------------------------------- 60 (211)
T cd03756 25 VKRGTTALGIKCKEGVVLAVDKRIT-SKLVEPESIEK------------------------------------------- 60 (211)
T ss_pred HHcCCCEEEEEECCEEEEEEeccCC-CcccCCCccce-------------------------------------------
Confidence 4689999999999999999999997 47777777778
Q ss_pred CCCCCCCccccccCCccccccccccCCccccCCCCCCCCCCCCcceEEEecCeEEEEEeCChhHHHHHHHHHHHHhhhhh
Q psy14210 82 SPPLSQSSQHIISGDSCELLHPVYTGGERCGPFSQSSTVPHNTSFQVIPVSSSILCTLAGNAADCVYWLHSLAKECKGYE 161 (312)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~dgVv~~~~~~~~~~~~~~~~KI~~I~d~i~~a~sG~~aD~q~l~~~lr~~~~~~~ 161 (312)
|++|+++++|+++|+.+|++.+.+.++.+++.|+
T Consensus 61 ----------------------------------------------I~~I~~~i~~~~sG~~~D~~~l~~~l~~~~~~~~ 94 (211)
T cd03756 61 ----------------------------------------------IYKIDDHVGAATSGLVADARVLIDRARVEAQIHR 94 (211)
T ss_pred ----------------------------------------------EEEEcCCEEEEEecCHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999
Q ss_pred hhcCCccCHHHHHHHHHHHHHHhccCCCCCCCCCCcccceeeeEEecCCCCeEEEEcCCceEEecCeeeEccChHHHHHH
Q psy14210 162 CKYRTGMTIRHAANLLVNMVRKYRTGNHSSKIPNGLSFGTLMAAYDEILGPQLYMLDNTGLLIEGTKFCVGSGAEYAQAI 241 (312)
Q Consensus 162 ~~~g~~i~v~~la~~ls~~l~~~~~~~~~~~rP~gls~~~IIaG~D~~~gp~Ly~iDpsGs~~e~~~~AiGsGs~~a~~~ 241 (312)
++++++++++.+++++++++|.+++ +++.|||+ +++||+|||+ .+|+||.+||+|++.+++++++|+|+.+++++
T Consensus 95 ~~~~~~~~~~~la~~ls~~~~~~~~--~~~~rP~~--v~~ll~G~D~-~~~~ly~vd~~G~~~~~~~~a~G~g~~~~~~~ 169 (211)
T cd03756 95 LTYGEPIDVEVLVKKICDLKQQYTQ--HGGVRPFG--VALLIAGVDD-GGPRLFETDPSGAYNEYKATAIGSGRQAVTEF 169 (211)
T ss_pred HHHCCCCCHHHHHHHHHHHHHHhcC--CCCeechh--EEEEEEEEeC-CCCEEEEECCCCCeeeeEEEEECCCCHHHHHH
Confidence 9999999999999999999999998 88899998 4689999997 78999999999999999999999999999999
Q ss_pred HHhhCCCCCCHHHHHHHHHHHHHHHHHhcCcCCCcEEEEEEE
Q psy14210 242 LDTDYRPDLSEEEAYALATSAIYHACRRDIHSGGCVRLYKIN 283 (312)
Q Consensus 242 Le~~y~~~ms~eEAi~la~kaL~~a~~rD~~sg~~ieI~iIt 283 (312)
||++|+++|++|||++++++||..+.++|. ++++++|++|+
T Consensus 170 Le~~~~~~m~~~ea~~l~~~~l~~~~~~~~-~~~~~~v~ii~ 210 (211)
T cd03756 170 LEKEYKEDMSLEEAIELALKALYAALEENE-TPENVEIAYVT 210 (211)
T ss_pred HHhhccCCCCHHHHHHHHHHHHHHHhcccC-CCCcEEEEEEe
Confidence 999999999999999999999999998775 89999999986
No 24
>cd01911 proteasome_alpha proteasome alpha subunit. The 20S proteasome, multisubunit proteolytic complex, is the central enzyme of nonlysosomal protein degradation in both the cytosol and nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis. Mammals have 7 different alpha and 10 different beta proteasome subunit genes while archaea have one of each.
Probab=100.00 E-value=8.6e-40 Score=293.16 Aligned_cols=186 Identities=25% Similarity=0.446 Sum_probs=175.5
Q ss_pred cccCceEEEEEcCCeEEEEEcCCccCCcccccccccccccccCCCcccccCccccCCcccCCCccccccccccccccccC
Q psy14210 2 FITGTTTLGFRYPEGIILATDSRATANDLIVSQKLNKFCQSSLGDSCELLHPVYTGGERCGQSYSQRSHCVAETQQDHFL 81 (312)
Q Consensus 2 ~~~g~t~~~~~~~~gv~~~~d~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (312)
+.+|||++|++++||||||+|+|.+. +++..+..+|
T Consensus 24 ~~~G~tvigi~~~dgVvlaaD~~~~~-~~~~~~~~~K------------------------------------------- 59 (209)
T cd01911 24 VKNGSTAVGIKGKDGVVLAVEKKVTS-KLLDPSSVEK------------------------------------------- 59 (209)
T ss_pred HHcCCCEEEEEECCEEEEEEEecCCc-cccCCcccce-------------------------------------------
Confidence 36899999999999999999999996 5666667777
Q ss_pred CCCCCCCccccccCCccccccccccCCccccCCCCCCCCCCCCcceEEEecCeEEEEEeCChhHHHHHHHHHHHHhhhhh
Q psy14210 82 SPPLSQSSQHIISGDSCELLHPVYTGGERCGPFSQSSTVPHNTSFQVIPVSSSILCTLAGNAADCVYWLHSLAKECKGYE 161 (312)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~dgVv~~~~~~~~~~~~~~~~KI~~I~d~i~~a~sG~~aD~q~l~~~lr~~~~~~~ 161 (312)
||+|+++++|+++|..+|++.+.+.++.+++.|+
T Consensus 60 ----------------------------------------------I~~i~~~i~~~~sG~~~D~~~l~~~l~~~~~~~~ 93 (209)
T cd01911 60 ----------------------------------------------IFKIDDHIGCAVAGLTADARVLVNRARVEAQNYR 93 (209)
T ss_pred ----------------------------------------------EEEecCCeEEEeccCcHhHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999
Q ss_pred hhcCCccCHHHHHHHHHHHHHHhccCCCCCCCCCCcccceeeeEEecCCCCeEEEEcCCceEEecCeeeEccChHHHHHH
Q psy14210 162 CKYRTGMTIRHAANLLVNMVRKYRTGNHSSKIPNGLSFGTLMAAYDEILGPQLYMLDNTGLLIEGTKFCVGSGAEYAQAI 241 (312)
Q Consensus 162 ~~~g~~i~v~~la~~ls~~l~~~~~~~~~~~rP~gls~~~IIaG~D~~~gp~Ly~iDpsGs~~e~~~~AiGsGs~~a~~~ 241 (312)
+.++++++++.+|++++++++.+++ ++++|||+ +++||+|||++++|+||.+||.|++.+++++++|+|+.+++++
T Consensus 94 ~~~g~~~~~~~la~~ls~~~~~~~~--~~~~rP~~--v~~iv~G~d~~~~~~Ly~iD~~G~~~~~~~~a~G~g~~~~~~~ 169 (209)
T cd01911 94 YTYGEPIPVEVLVKRIADLAQVYTQ--YGGVRPFG--VSLLIAGYDEEGGPQLYQTDPSGTYFGYKATAIGKGSQEAKTF 169 (209)
T ss_pred HHhCCCCCHHHHHHHHHHHHHHHhc--ccCccChh--heEEEEEEcCCCCcEEEEECCCCCeeeeeEEEeCCCcHHHHHH
Confidence 9999999999999999999999998 88899988 5689999998569999999999999999999999999999999
Q ss_pred HHhhCCCCCCHHHHHHHHHHHHHHHHHhcCcCCCcEEEEEE
Q psy14210 242 LDTDYRPDLSEEEAYALATSAIYHACRRDIHSGGCVRLYKI 282 (312)
Q Consensus 242 Le~~y~~~ms~eEAi~la~kaL~~a~~rD~~sg~~ieI~iI 282 (312)
||+.|+++|+++||++++++||+.+.+||. +++.++|+++
T Consensus 170 L~~~~~~~ms~~ea~~l~~~~l~~~~~~d~-~~~~~~i~i~ 209 (209)
T cd01911 170 LEKRYKKDLTLEEAIKLALKALKEVLEEDK-KAKNIEIAVV 209 (209)
T ss_pred HHHhcccCCCHHHHHHHHHHHHHHHHhccC-CCCcEEEEEC
Confidence 999999999999999999999999999998 9999999875
No 25
>PF00227 Proteasome: Proteasome subunit; InterPro: IPR001353 ATP-dependent protease complexes are present in all three kingdoms of life, where they rid the cell of misfolded or damaged proteins and control the level of certain regulatory proteins. They include the proteasome in Eukaryotes, Archaea, and Actinomycetales and the HslVU (ClpQY, clpXP) complex in other eubacteria. Genes homologous to eubacterial HslV (ClpQ) and HslU (ClpY, clpX) have also been demonstrated in to be present in the genome of trypanosomatid protozoa []. The proteasome (or macropain) (3.4.25.1 from EC) [, , , , ] is a eukaryotic and archaeal multicatalytic proteinase complex that seems to be involved in an ATP/ubiquitin-dependent nonlysosomal proteolytic pathway. In eukaryotes the proteasome is composed of about 28 distinct subunits which form a highly ordered ring-shaped structure (20S ring) of about 700 kDa. Most proteasome subunits can be classified, on the basis on sequence similarities into two groups, alpha (A) and beta (B). The prokaryotic ATP-dependent proteasome is coded for by the heat-shock locus VU (HslVU). It consists of HslV, the protease (MEROPS peptidase subfamily T1B), and HslU, IPR004491 from INTERPRO, the ATPase and chaperone belonging to the AAA/Clp/Hsp100 family. The crystal structure of Thermotoga maritima HslV has been determined to 2.1-A resolution. The structure of the dodecameric enzyme is well conserved compared to those from Escherichia coli and Haemophilus influenzae [, ]. This entry contains threonine peptidases and non-peptidase homologs belong to MEROPS peptidase family T1 (proteasome family, clan PB(T)). The family consists of the protease components of the archaeal and bacterial proteasomes and the alpha and beta subunits of the eukaryotic proteasome. ; GO: 0004298 threonine-type endopeptidase activity, 0051603 proteolysis involved in cellular protein catabolic process, 0005839 proteasome core complex; PDB: 3KRD_1 3H6F_M 2FHH_F 3HF9_F 2FHG_D 3HFA_B 3H6I_K 3MI0_A 3MFE_1 3MKA_F ....
Probab=100.00 E-value=8.1e-40 Score=287.34 Aligned_cols=188 Identities=34% Similarity=0.554 Sum_probs=177.5
Q ss_pred cccCceEEEEEcCCeEEEEEcCCccCCccccccc-ccccccccCCCcccccCccccCCcccCCCcccccccccccccccc
Q psy14210 2 FITGTTTLGFRYPEGIILATDSRATANDLIVSQK-LNKFCQSSLGDSCELLHPVYTGGERCGQSYSQRSHCVAETQQDHF 80 (312)
Q Consensus 2 ~~~g~t~~~~~~~~gv~~~~d~~~~~~~~~~~~~-~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (312)
+.+|||+|||+++|||+||+|+|.++|+.+.++. ++|
T Consensus 1 v~~G~t~vgi~~~dgvvla~d~~~~~g~~~~~~~~~~k------------------------------------------ 38 (190)
T PF00227_consen 1 VNNGTTVVGIKGKDGVVLAADKRISYGSKLRSPNTVDK------------------------------------------ 38 (190)
T ss_dssp HHTSBEEEEEEESSEEEEEEEEEEEETTEEEESSTSSS------------------------------------------
T ss_pred CCCCeEEEEEEECCEEEEEEccccccccccccccccce------------------------------------------
Confidence 3689999999999999999999999999886665 677
Q ss_pred CCCCCCCCccccccCCccccccccccCCccccCCCCCCCCCCCCcceEEEecCeEEEEEeCChhHHHHHHHHHHHHhhhh
Q psy14210 81 LSPPLSQSSQHIISGDSCELLHPVYTGGERCGPFSQSSTVPHNTSFQVIPVSSSILCTLAGNAADCVYWLHSLAKECKGY 160 (312)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~dgVv~~~~~~~~~~~~~~~~KI~~I~d~i~~a~sG~~aD~q~l~~~lr~~~~~~ 160 (312)
||+|++|++++++|..+|++.+.++++.+++.|
T Consensus 39 -----------------------------------------------i~~i~~~i~~~~sG~~~D~~~l~~~l~~~~~~~ 71 (190)
T PF00227_consen 39 -----------------------------------------------IFKINDNIIIGFSGLTADFQYLIRRLREEAQEY 71 (190)
T ss_dssp -----------------------------------------------EEEEETTEEEEEEESHHHHHHHHHHHHHHHHHH
T ss_pred -----------------------------------------------eeeccCcceeeccccccchHHHHhhhcccchhh
Confidence 999999999999999999999999999999999
Q ss_pred hhhcCCccCHHHHHHHHHHHHHHhccCCCCCCCCCCcccceeeeEEecCCCCeEEEEcCCceEEec-CeeeEccChHHHH
Q psy14210 161 ECKYRTGMTIRHAANLLVNMVRKYRTGNHSSKIPNGLSFGTLMAAYDEILGPQLYMLDNTGLLIEG-TKFCVGSGAEYAQ 239 (312)
Q Consensus 161 ~~~~g~~i~v~~la~~ls~~l~~~~~~~~~~~rP~gls~~~IIaG~D~~~gp~Ly~iDpsGs~~e~-~~~AiGsGs~~a~ 239 (312)
++.++.+++++.+++.+++.++.+++ +.++|||+ +++|+||||+.++|+||.+||+|++.++ +++++|+|+.+++
T Consensus 72 ~~~~~~~~~~~~l~~~~~~~~~~~~~--~~~~~p~~--~~~li~G~d~~~~~~l~~vd~~G~~~~~~~~~aiG~g~~~~~ 147 (190)
T PF00227_consen 72 RFSYGRPISPEYLAKAIASLIQNYTY--RSGRRPYG--VSLLIAGYDEDGGPQLYSVDPSGSYIECKRFAAIGSGSQFAQ 147 (190)
T ss_dssp HHHHSSGTCHHHHHHHHHHHHHHHHH--HTTTSTTS--EEEEEEEEETTTEEEEEEEETTSEEEEBSSEEEESTTHHHHH
T ss_pred hhccCccccchhhhhhhHHHHhhhcc--cccccCcc--ccceeeeeccccccceeeeccccccccccccccchhcchhhh
Confidence 99999999999999999999999888 77889988 5689999998566999999999999999 6999999999999
Q ss_pred HHHHhhCCCCCCHHHHHHHHHHHHHHHHHhcCcCCCcEEEEEE
Q psy14210 240 AILDTDYRPDLSEEEAYALATSAIYHACRRDIHSGGCVRLYKI 282 (312)
Q Consensus 240 ~~Le~~y~~~ms~eEAi~la~kaL~~a~~rD~~sg~~ieI~iI 282 (312)
++||+.|+++||++||++++++||+.+.++|..++++++|++|
T Consensus 148 ~~l~~~~~~~~~~~ea~~~~~~~l~~~~~~d~~~~~~~~v~vi 190 (190)
T PF00227_consen 148 PILEKLYKPDLSLEEAIELALKALKEAIDRDILSGDNIEVAVI 190 (190)
T ss_dssp HHHHHHHTTTSSHHHHHHHHHHHHHHHHHHBTTSTSEEEEEEE
T ss_pred HHHHhhccCCCCHHHHHHHHHHHHHHHHhhCCccCCeEEEEEC
Confidence 9999999999999999999999999999999999999999986
No 26
>KOG0176|consensus
Probab=100.00 E-value=8e-40 Score=282.48 Aligned_cols=206 Identities=23% Similarity=0.404 Sum_probs=192.6
Q ss_pred cccCceEEEEEcCCeEEEEEcCCccCCcccccccccccccccCCCcccccCccccCCcccCCCccccccccccccccccC
Q psy14210 2 FITGTTTLGFRYPEGIILATDSRATANDLIVSQKLNKFCQSSLGDSCELLHPVYTGGERCGQSYSQRSHCVAETQQDHFL 81 (312)
Q Consensus 2 ~~~g~t~~~~~~~~gv~~~~d~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (312)
+..|+|.+|++.++|||||+++|.|+ .+..+.+++|
T Consensus 31 ikLGsTaIGv~TkEgVvL~vEKritS-pLm~p~sveK------------------------------------------- 66 (241)
T KOG0176|consen 31 IKLGSTAIGVKTKEGVVLAVEKRITS-PLMEPSSVEK------------------------------------------- 66 (241)
T ss_pred HhcCCceeeeeccceEEEEEeccccC-cccCchhhhh-------------------------------------------
Confidence 35799999999999999999999999 9999999999
Q ss_pred CCCCCCCccccccCCccccccccccCCccccCCCCCCCCCCCCcceEEEecCeEEEEEeCChhHHHHHHHHHHHHhhhhh
Q psy14210 82 SPPLSQSSQHIISGDSCELLHPVYTGGERCGPFSQSSTVPHNTSFQVIPVSSSILCTLAGNAADCVYWLHSLAKECKGYE 161 (312)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~dgVv~~~~~~~~~~~~~~~~KI~~I~d~i~~a~sG~~aD~q~l~~~lr~~~~~~~ 161 (312)
|++|++||+|++||+.+|++.++++.|.++++|.
T Consensus 67 ----------------------------------------------i~eid~HIgca~SGl~aDarTlve~arv~~qnh~ 100 (241)
T KOG0176|consen 67 ----------------------------------------------IVEIDDHIGCAMSGLIADARTLVERARVETQNHW 100 (241)
T ss_pred ----------------------------------------------heehhhceeeeccccccchHHHHHHHHHHhhhce
Confidence 8999999999999999999999999999999999
Q ss_pred hhcCCccCHHHHHHHHHHHHHHhccCC---CCCCCCCCcccceeeeEEecCCCCeEEEEcCCceEEecCeeeEccChHHH
Q psy14210 162 CKYRTGMTIRHAANLLVNMVRKYRTGN---HSSKIPNGLSFGTLMAAYDEILGPQLYMLDNTGLLIEGTKFCVGSGAEYA 238 (312)
Q Consensus 162 ~~~g~~i~v~~la~~ls~~l~~~~~~~---~~~~rP~gls~~~IIaG~D~~~gp~Ly~iDpsGs~~e~~~~AiGsGs~~a 238 (312)
+.|+++++++.+.+.++++-.++..++ ..-.||||+ ++|+||+|+ .+|+||+.||+|+++.+++-|||+|+..+
T Consensus 101 f~Y~e~i~VEs~tq~v~~LaLrFGe~~~~~~~msRPFGV--alliAG~D~-~gpqL~h~dPSGtf~~~~AKAIGSgsEga 177 (241)
T KOG0176|consen 101 FTYGEPISVESLTQAVSDLALRFGEGDDEEAIMSRPFGV--ALLIAGHDE-TGPQLYHLDPSGTFIRYKAKAIGSGSEGA 177 (241)
T ss_pred eecCCcccHHHHHHHHHHHHhHhCCCcchhhhhcCCcce--EEEEeeccC-CCceEEEeCCCCceEEecceeccccchHH
Confidence 999999999999999999999888742 112699995 689999997 89999999999999999999999999999
Q ss_pred HHHHHhhCCCCCCHHHHHHHHHHHHHHHHHhcCcCCCcEEEEEEECC-CeEEeChhHHHHHHHH
Q psy14210 239 QAILDTDYRPDLSEEEAYALATSAIYHACRRDIHSGGCVRLYKINGQ-GWQQVLSRDVKDIYND 301 (312)
Q Consensus 239 ~~~Le~~y~~~ms~eEAi~la~kaL~~a~~rD~~sg~~ieI~iItk~-G~~~l~~~eI~~~l~~ 301 (312)
++.|++.|+++|+++||+.++++.|+.+++.. .+.+|+++.+++++ ++++++++|++.++++
T Consensus 178 ~~~L~~e~~~~ltL~ea~~~~L~iLkqVMeeK-l~~~Nvev~~vt~e~~f~~~t~EE~~~~i~~ 240 (241)
T KOG0176|consen 178 ESSLQEEYHKDLTLKEAEKIVLKILKQVMEEK-LNSNNVEVAVVTPEGEFHIYTPEEVEQVIKR 240 (241)
T ss_pred HHHHHHHHhhcccHHHHHHHHHHHHHHHHHHh-cCccceEEEEEcccCceEecCHHHHHHHHhc
Confidence 99999999999999999999999999999866 56799999999997 6999999999999875
No 27
>cd03749 proteasome_alpha_type_1 proteasome_alpha_type_1. The 20S proteasome, multisubunit proteolytic complex, is the central enzyme of nonlysosomal protein degradation in both the cytosol and nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis. Mammals have 7 alpha and 7 beta proteasome subunits while archaea have one of each.
Probab=100.00 E-value=1.6e-39 Score=292.26 Aligned_cols=152 Identities=22% Similarity=0.321 Sum_probs=145.3
Q ss_pred eEEEecCeEEEEEeCChhHHHHHHHHHHHHhhhhhhhcCCccCHHHHHHHHHHHHHHhccCCCCCCCCCCcccceeeeEE
Q psy14210 127 QVIPVSSSILCTLAGNAADCVYWLHSLAKECKGYECKYRTGMTIRHAANLLVNMVRKYRTGNHSSKIPNGLSFGTLMAAY 206 (312)
Q Consensus 127 KI~~I~d~i~~a~sG~~aD~q~l~~~lr~~~~~~~~~~g~~i~v~~la~~ls~~l~~~~~~~~~~~rP~gls~~~IIaG~ 206 (312)
|||+|++|++|++||+.+|++.+.++++.+++.|+++++++++++.+++++++++|.+++ +++.|||+ +++||+||
T Consensus 57 KI~~I~~~i~~~~sG~~~D~~~l~~~~r~~~~~~~~~~~~~~~v~~la~~is~~~~~~t~--~~~~rP~~--v~~ii~G~ 132 (211)
T cd03749 57 KIFKVDDHIGIAIAGLTADARVLSRYMRQECLNYRFVYDSPIPVSRLVSKVAEKAQINTQ--RYGRRPYG--VGLLIAGY 132 (211)
T ss_pred cEEEeCCCEEEEEEeChHhHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHhc--ccCCCCce--EEEEEEEE
Confidence 499999999999999999999999999999999999999999999999999999999998 88899998 46899999
Q ss_pred ecCCCCeEEEEcCCceEEecCeeeEccChHHHHHHHHhhCC--CCCCHHHHHHHHHHHHHHHHHhcC-cCCCcEEEEEEE
Q psy14210 207 DEILGPQLYMLDNTGLLIEGTKFCVGSGAEYAQAILDTDYR--PDLSEEEAYALATSAIYHACRRDI-HSGGCVRLYKIN 283 (312)
Q Consensus 207 D~~~gp~Ly~iDpsGs~~e~~~~AiGsGs~~a~~~Le~~y~--~~ms~eEAi~la~kaL~~a~~rD~-~sg~~ieI~iIt 283 (312)
|+ .||+||++||+|++.+++++|+|+|+.+++++||++|+ ++||+|||+++++++|+.++++|. .++++|||++|+
T Consensus 133 D~-~gp~Ly~~Dp~G~~~~~~~~a~G~g~~~a~~~Le~~~~~~~~ms~ee~i~~~~~~l~~~~~~~~~~~~~~iei~ii~ 211 (211)
T cd03749 133 DE-SGPHLFQTCPSGNYFEYKATSIGARSQSARTYLERHFEEFEDCSLEELIKHALRALRETLPGEQELTIKNVSIAIVG 211 (211)
T ss_pred cC-CCCeEEEECCCcCEeeeeEEEECCCcHHHHHHHHHhhccccCCCHHHHHHHHHHHHHHHhccCCCCCCCcEEEEEEC
Confidence 97 68999999999999999999999999999999999999 599999999999999999999887 889999999983
No 28
>cd03754 proteasome_alpha_type_6 proteasome_alpha_type_6. The 20S proteasome, multisubunit proteolytic complex, is the central enzyme of nonlysosomal protein degradation in both the cytosol and nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis. Mammals have 7 alpha and 7 beta proteasome subunits while archaea have one of each.
Probab=100.00 E-value=2e-39 Score=292.44 Aligned_cols=184 Identities=22% Similarity=0.342 Sum_probs=172.1
Q ss_pred cCceEEEEEcCCeEEEEEcCCccCCcccccccccccccccCCCcccccCccccCCcccCCCccccccccccccccccCCC
Q psy14210 4 TGTTTLGFRYPEGIILATDSRATANDLIVSQKLNKFCQSSLGDSCELLHPVYTGGERCGQSYSQRSHCVAETQQDHFLSP 83 (312)
Q Consensus 4 ~g~t~~~~~~~~gv~~~~d~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (312)
+|||++||+++||||||+|+|.+. .++.++..+|
T Consensus 28 ~g~t~igi~~~d~Vvlaad~r~~~-~~i~~~~~~K--------------------------------------------- 61 (215)
T cd03754 28 AGLTSVAVRGKDCAVVVTQKKVPD-KLIDPSTVTH--------------------------------------------- 61 (215)
T ss_pred CCccEEEEEeCCEEEEEEeccccc-cccCCcccCc---------------------------------------------
Confidence 589999999999999999999887 5666666667
Q ss_pred CCCCCccccccCCccccccccccCCccccCCCCCCCCCCCCcceEEEecCeEEEEEeCChhHHHHHHHHHHHHhhhhhhh
Q psy14210 84 PLSQSSQHIISGDSCELLHPVYTGGERCGPFSQSSTVPHNTSFQVIPVSSSILCTLAGNAADCVYWLHSLAKECKGYECK 163 (312)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~dgVv~~~~~~~~~~~~~~~~KI~~I~d~i~~a~sG~~aD~q~l~~~lr~~~~~~~~~ 163 (312)
||+|+++++|+++|+.+|++.+.+++|.+++.|+++
T Consensus 62 --------------------------------------------i~~I~~~i~~~~sG~~~D~~~l~~~~r~~~~~~~~~ 97 (215)
T cd03754 62 --------------------------------------------LFRITDEIGCVMTGMIADSRSQVQRARYEAAEFKYK 97 (215)
T ss_pred --------------------------------------------eEEEcCCEEEEEEechhhHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999
Q ss_pred cCCccCHHHHHHHHHHHHHHhccCCCCCCCCCCcccceeeeEEecCCCCeEEEEcCCceEEecCeeeEccChHHHHHHHH
Q psy14210 164 YRTGMTIRHAANLLVNMVRKYRTGNHSSKIPNGLSFGTLMAAYDEILGPQLYMLDNTGLLIEGTKFCVGSGAEYAQAILD 243 (312)
Q Consensus 164 ~g~~i~v~~la~~ls~~l~~~~~~~~~~~rP~gls~~~IIaG~D~~~gp~Ly~iDpsGs~~e~~~~AiGsGs~~a~~~Le 243 (312)
++++++++.+|+++++++|.+++ +++.|||+ +++||||||++++|+||++||+|++.+++++|+|+|+.+++++||
T Consensus 98 ~~~~i~v~~la~~ls~~~q~yt~--~~~~RP~~--v~~ii~G~D~~~gp~Ly~~Dp~Gs~~~~~~~a~G~gs~~~~~~Le 173 (215)
T cd03754 98 YGYEMPVDVLAKRIADINQVYTQ--HAYMRPLG--VSMILIGIDEELGPQLYKCDPAGYFAGYKATAAGVKEQEATNFLE 173 (215)
T ss_pred HCCCCCHHHHHHHHHHHHHHHhC--CCCCcCCe--eEEEEEEEeCCCCeEEEEEcCCccEEeEEEEEECCCcHHHHHHHH
Confidence 99999999999999999999998 78899999 568999999757999999999999999999999999999999999
Q ss_pred hhCCCC--C--CHHHHHHHHHHHHHHHHHhcCcCCCcEEEEEE
Q psy14210 244 TDYRPD--L--SEEEAYALATSAIYHACRRDIHSGGCVRLYKI 282 (312)
Q Consensus 244 ~~y~~~--m--s~eEAi~la~kaL~~a~~rD~~sg~~ieI~iI 282 (312)
++|+++ | |+|||++++++||..+.+||. +++++||+++
T Consensus 174 ~~~~~~~~~~~s~eeai~l~~~al~~~~~rd~-~~~~~ei~~~ 215 (215)
T cd03754 174 KKLKKKPDLIESYEETVELAISCLQTVLSTDF-KATEIEVGVV 215 (215)
T ss_pred HHhccccccCCCHHHHHHHHHHHHHHHhcccC-CCCcEEEEEC
Confidence 999985 7 999999999999999999995 5899999875
No 29
>KOG0174|consensus
Probab=100.00 E-value=1e-39 Score=281.13 Aligned_cols=199 Identities=28% Similarity=0.431 Sum_probs=186.3
Q ss_pred cccCceEEEEEcCCeEEEEEcCCccCCcccccccccccccccCCCcccccCccccCCcccCCCccccccccccccccccC
Q psy14210 2 FITGTTTLGFRYPEGIILATDSRATANDLIVSQKLNKFCQSSLGDSCELLHPVYTGGERCGQSYSQRSHCVAETQQDHFL 81 (312)
Q Consensus 2 ~~~g~t~~~~~~~~gv~~~~d~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (312)
+.||||++|++|+|||||+||+|+|.|.+|.+|..+|
T Consensus 16 vstGTTImAv~y~gGVvlGaDSRTs~GayvanRvtDK------------------------------------------- 52 (224)
T KOG0174|consen 16 VSTGTTIMAVEYDGGVVLGADSRTSTGAYVANRVTDK------------------------------------------- 52 (224)
T ss_pred cccCceEEEEEEcCcEEEeccCCccchHHHHhhhccc-------------------------------------------
Confidence 4789999999999999999999999999999999999
Q ss_pred CCCCCCCccccccCCccccccccccCCccccCCCCCCCCCCCCcceEEEecCeEEEEEeCChhHHHHHHHHHHHHhhhhh
Q psy14210 82 SPPLSQSSQHIISGDSCELLHPVYTGGERCGPFSQSSTVPHNTSFQVIPVSSSILCTLAGNAADCVYWLHSLAKECKGYE 161 (312)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~dgVv~~~~~~~~~~~~~~~~KI~~I~d~i~~a~sG~~aD~q~l~~~lr~~~~~~~ 161 (312)
+.+|+|+|+||.||.+||.|.+.+.++..+..|.
T Consensus 53 ----------------------------------------------lT~itD~i~cCRSGSAADtQaiaD~~~Y~L~~~~ 86 (224)
T KOG0174|consen 53 ----------------------------------------------LTPITDNIYCCRSGSAADTQAIADIVRYHLELYT 86 (224)
T ss_pred ----------------------------------------------ceeccccEEEecCCchhhHHHHHHHHHHHHHHhh
Confidence 7899999999999999999999999999999999
Q ss_pred hhcCCccCHHHHHHHHHHHHHHhccCCCCCCCCCCcccceeeeEEecCCCCeEEEEcCCceEEecCeeeEccChHHHHHH
Q psy14210 162 CKYRTGMTIRHAANLLVNMVRKYRTGNHSSKIPNGLSFGTLMAAYDEILGPQLYMLDNTGLLIEGTKFCVGSGAEYAQAI 241 (312)
Q Consensus 162 ~~~g~~i~v~~la~~ls~~l~~~~~~~~~~~rP~gls~~~IIaG~D~~~gp~Ly~iDpsGs~~e~~~~AiGsGs~~a~~~ 241 (312)
.+++.++++...|+.++++.|+|+. .+++++|+||||+..|.++|.+-.-|++.+.++..-||||.|++++
T Consensus 87 ~q~~~~p~v~~aA~l~r~~~Y~~re---------~L~AgliVAGwD~~~gGqVY~iplGG~l~rq~~aIgGSGStfIYGf 157 (224)
T KOG0174|consen 87 IQENKPPLVHTAASLFREICYNYRE---------MLSAGLIVAGWDEKEGGQVYSIPLGGSLTRQPFAIGGSGSTFIYGF 157 (224)
T ss_pred hhcCCCchHHHHHHHHHHHHHhCHH---------hhhcceEEeecccccCceEEEeecCceEeecceeeccCCceeeeee
Confidence 9999999999999999999999998 2778999999999889999999888888887777778999999999
Q ss_pred HHhhCCCCCCHHHHHHHHHHHHHHHHHhcCcCCCcEEEEEEECCCeEE--eChhHHHHH
Q psy14210 242 LDTDYRPDLSEEEAYALATSAIYHACRRDIHSGGCVRLYKINGQGWQQ--VLSRDVKDI 298 (312)
Q Consensus 242 Le~~y~~~ms~eEAi~la~kaL~~a~~rD~~sg~~ieI~iItk~G~~~--l~~~eI~~~ 298 (312)
++.+|+++||+||+++++++|+..|++||-.+|+.|++.+|+++|+++ +..+++..+
T Consensus 158 ~D~~~r~nMt~EE~~~fvk~Av~lAi~rDGsSGGviR~~~I~~~Gver~~~~~d~~~~~ 216 (224)
T KOG0174|consen 158 CDANWRPNMTLEECVRFVKNAVSLAIERDGSSGGVIRLVIINKAGVERRFFPGDKLGQF 216 (224)
T ss_pred ehhhcCCCCCHHHHHHHHHHHHHHHHhccCCCCCEEEEEEEccCCceEEEecCCccccc
Confidence 999999999999999999999999999999999999999999999754 466665544
No 30
>cd03753 proteasome_alpha_type_5 proteasome_alpha_type_5. The 20S proteasome, multisubunit proteolytic complex, is the central enzyme of nonlysosomal protein degradation in both the cytosol and nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis. Mammals have 7 alpha and 7 beta proteasome subunits while archaea have one of each.
Probab=100.00 E-value=7.5e-39 Score=287.96 Aligned_cols=187 Identities=27% Similarity=0.442 Sum_probs=172.0
Q ss_pred cccCceEEEEEcCCeEEEEEcCCccCCcccccccccccccccCCCcccccCccccCCcccCCCccccccccccccccccC
Q psy14210 2 FITGTTTLGFRYPEGIILATDSRATANDLIVSQKLNKFCQSSLGDSCELLHPVYTGGERCGQSYSQRSHCVAETQQDHFL 81 (312)
Q Consensus 2 ~~~g~t~~~~~~~~gv~~~~d~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (312)
+.+|||+||++++||||||+|+|.++ .++.++.++|
T Consensus 24 ~~~G~t~igik~~dgVvlaad~r~~~-~~~~~~~~~K------------------------------------------- 59 (213)
T cd03753 24 IKLGSTAIGIKTKEGVVLAVEKRITS-PLMEPSSVEK------------------------------------------- 59 (213)
T ss_pred HhcCCCEEEEEeCCEEEEEEecccCC-cCcCCCccce-------------------------------------------
Confidence 46899999999999999999999986 5677777777
Q ss_pred CCCCCCCccccccCCccccccccccCCccccCCCCCCCCCCCCcceEEEecCeEEEEEeCChhHHHHHHHHHHHHhhhhh
Q psy14210 82 SPPLSQSSQHIISGDSCELLHPVYTGGERCGPFSQSSTVPHNTSFQVIPVSSSILCTLAGNAADCVYWLHSLAKECKGYE 161 (312)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~dgVv~~~~~~~~~~~~~~~~KI~~I~d~i~~a~sG~~aD~q~l~~~lr~~~~~~~ 161 (312)
|++|+++++|+++|+.+|++.+.+.++.+++.|+
T Consensus 60 ----------------------------------------------I~~I~~~i~~~~sG~~~D~~~l~~~~r~~~~~~~ 93 (213)
T cd03753 60 ----------------------------------------------IMEIDDHIGCAMSGLIADARTLIDHARVEAQNHR 93 (213)
T ss_pred ----------------------------------------------EEEEcCCEEEEEecCHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999
Q ss_pred hhcCCccCHHHHHHHHHHHHHHhccCC---CCCCCCCCcccceeeeEEecCCCCeEEEEcCCceEEecCeeeEccChHHH
Q psy14210 162 CKYRTGMTIRHAANLLVNMVRKYRTGN---HSSKIPNGLSFGTLMAAYDEILGPQLYMLDNTGLLIEGTKFCVGSGAEYA 238 (312)
Q Consensus 162 ~~~g~~i~v~~la~~ls~~l~~~~~~~---~~~~rP~gls~~~IIaG~D~~~gp~Ly~iDpsGs~~e~~~~AiGsGs~~a 238 (312)
+.++++++++.+++++++++|.+++.. ++..|||+ +++||||||+ .+|+||.+||+|++.+++++|+|++++++
T Consensus 94 ~~~~~~i~~~~~~~~ls~~~~~~~~~~~~~~~~~rP~~--v~~ii~G~D~-~gp~Ly~vd~~G~~~~~~~~a~G~~~~~~ 170 (213)
T cd03753 94 FTYNEPMTVESVTQAVSDLALQFGEGDDGKKAMSRPFG--VALLIAGVDE-NGPQLFHTDPSGTFTRCDAKAIGSGSEGA 170 (213)
T ss_pred HHhCCCCCHHHHHHHHHHHHHHHhCcccccccccccce--EEEEEEEEcC-CCCEEEEECCCCCeecccEEEECCCcHHH
Confidence 999999999999999999999988621 22469988 5689999997 78999999999999999999999999999
Q ss_pred HHHHHhhCCCCCCHHHHHHHHHHHHHHHHHhcCcCCCcEEEEEE
Q psy14210 239 QAILDTDYRPDLSEEEAYALATSAIYHACRRDIHSGGCVRLYKI 282 (312)
Q Consensus 239 ~~~Le~~y~~~ms~eEAi~la~kaL~~a~~rD~~sg~~ieI~iI 282 (312)
+++|+++|+++||+|||++++++||+.+.+++ .++++++|+++
T Consensus 171 ~~~L~~~~~~~ls~eeai~l~~~~l~~~~~~~-~~~~~~ei~~~ 213 (213)
T cd03753 171 QSSLQEKYHKDMTLEEAEKLALSILKQVMEEK-LNSTNVELATV 213 (213)
T ss_pred HHHHHhhccCCCCHHHHHHHHHHHHHHHhccc-CCCCcEEEEEC
Confidence 99999999999999999999999999988766 78899999875
No 31
>cd01906 proteasome_protease_HslV proteasome_protease_HslV. This group contains the eukaryotic proteosome alpha and beta subunits and the prokaryotic protease hslV subunit. Proteasomes are large multimeric self-compartmentalizing proteases, involved in the clearance of misfolded proteins, the breakdown of regulatory proteins, and the processing of proteins such as the preparation of peptides for immune presentation. Two main proteasomal types are distinguished by their different tertiary structures: the eukaryotic/archeal 20S proteasome and the prokaryotic proteasome-like heat shock protein encoded by heat shock locus V, hslV. The proteasome core particle is a highly conserved cylindrical structure made up of non-identical subunits that have their active sites on the inner walls of a large central cavity. The proteasome subunits of bacteria, archaea, and eukaryotes all share a conserved Ntn (N terminal nucleophile) hydrolase fold and a catalytic mechanism involving an N-terminal nucleo
Probab=100.00 E-value=1.5e-38 Score=277.47 Aligned_cols=182 Identities=37% Similarity=0.571 Sum_probs=173.8
Q ss_pred ceEEEEEcCCeEEEEEcCCccCCcccccccccccccccCCCcccccCccccCCcccCCCccccccccccccccccCCCCC
Q psy14210 6 TTTLGFRYPEGIILATDSRATANDLIVSQKLNKFCQSSLGDSCELLHPVYTGGERCGQSYSQRSHCVAETQQDHFLSPPL 85 (312)
Q Consensus 6 ~t~~~~~~~~gv~~~~d~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (312)
||+||++++||||||+|+|.++|..+.+++.+|
T Consensus 1 tt~igi~~~dgvvla~d~~~~~~~~~~~~~~~K----------------------------------------------- 33 (182)
T cd01906 1 TTIVGIKGKDGVVLAADKRVTSGLLVASSTVEK----------------------------------------------- 33 (182)
T ss_pred CcEEEEEeCCEEEEEEecccCCcCeecCCCcce-----------------------------------------------
Confidence 799999999999999999999988877888888
Q ss_pred CCCccccccCCccccccccccCCccccCCCCCCCCCCCCcceEEEecCeEEEEEeCChhHHHHHHHHHHHHhhhhhhhcC
Q psy14210 86 SQSSQHIISGDSCELLHPVYTGGERCGPFSQSSTVPHNTSFQVIPVSSSILCTLAGNAADCVYWLHSLAKECKGYECKYR 165 (312)
Q Consensus 86 ~~~~~~~~~~~~~~~~~~~~~dgVv~~~~~~~~~~~~~~~~KI~~I~d~i~~a~sG~~aD~q~l~~~lr~~~~~~~~~~g 165 (312)
||+|+++++|+++|..+|++.+.+.++.++..|++.++
T Consensus 34 ------------------------------------------i~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~ 71 (182)
T cd01906 34 ------------------------------------------IFKIDDHIGCAFAGLAADAQTLVERLRKEAQLYRLRYG 71 (182)
T ss_pred ------------------------------------------EEEECCCEEEEEeeCHHHHHHHHHHHHHHHHHHHHHhC
Confidence 99999999999999999999999999999999999999
Q ss_pred CccCHHHHHHHHHHHHHHhccCCCCCCCCCCcccceeeeEEecCCCCeEEEEcCCceEEecCeeeEccChHHHHHHHHhh
Q psy14210 166 TGMTIRHAANLLVNMVRKYRTGNHSSKIPNGLSFGTLMAAYDEILGPQLYMLDNTGLLIEGTKFCVGSGAEYAQAILDTD 245 (312)
Q Consensus 166 ~~i~v~~la~~ls~~l~~~~~~~~~~~rP~gls~~~IIaG~D~~~gp~Ly~iDpsGs~~e~~~~AiGsGs~~a~~~Le~~ 245 (312)
++++++.+++++++++|.+++ + +|||+ +++|+||||++.+|+||.+||+|++.+++++++|+|+.+++++||+.
T Consensus 72 ~~~~~~~l~~~l~~~~~~~~~--~--~~p~~--~~~lv~G~d~~~~~~Ly~id~~G~~~~~~~~a~G~g~~~~~~~L~~~ 145 (182)
T cd01906 72 EPIPVEALAKLLANLLYEYTQ--S--LRPLG--VSLLVAGVDEEGGPQLYSVDPSGSYIEYKATAIGSGSQYALGILEKL 145 (182)
T ss_pred CCCCHHHHHHHHHHHHHHhCC--C--ccChh--eEEEEEEEeCCCCcEEEEECCCCCEeeccEEEECCCcHHHHHHHHHH
Confidence 999999999999999999998 4 89988 56899999975789999999999999999999999999999999999
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHHhcCcCCCcEEEEEE
Q psy14210 246 YRPDLSEEEAYALATSAIYHACRRDIHSGGCVRLYKI 282 (312)
Q Consensus 246 y~~~ms~eEAi~la~kaL~~a~~rD~~sg~~ieI~iI 282 (312)
|+++||++||++++++||+.+.++|..++.+++|++|
T Consensus 146 ~~~~~s~~ea~~l~~~~l~~~~~~~~~~~~~~~i~ii 182 (182)
T cd01906 146 YKPDMTLEEAIELALKALKSALERDLYSGGNIEVAVI 182 (182)
T ss_pred ccCCCCHHHHHHHHHHHHHHHHcccCCCCCCEEEEEC
Confidence 9999999999999999999999999989999999875
No 32
>TIGR03691 20S_bact_alpha proteasome, alpha subunit, bacterial type. Members of this family are the alpha subunit of the 20S proteasome as found in Actinobacteria such as Mycobacterium, Rhodococcus, and Streptomyces. In most Actinobacteria (an exception is Propionibacterium acnes), the proteasome is accompanied by a system of tagging proteins for degradation with Pup.
Probab=100.00 E-value=2.2e-38 Score=288.06 Aligned_cols=167 Identities=15% Similarity=0.170 Sum_probs=150.5
Q ss_pred EEEecCeEEEEEeCChhHHHHHHHHHHHHhhhhhhhcC-CccCHHHHHHHHHHHHHHhccCCCCCCCCCCcccceeeeEE
Q psy14210 128 VIPVSSSILCTLAGNAADCVYWLHSLAKECKGYECKYR-TGMTIRHAANLLVNMVRKYRTGNHSSKIPNGLSFGTLMAAY 206 (312)
Q Consensus 128 I~~I~d~i~~a~sG~~aD~q~l~~~lr~~~~~~~~~~g-~~i~v~~la~~ls~~l~~~~~~~~~~~rP~gls~~~IIaG~ 206 (312)
||+|+||++|+++|+.+|++.+++.++.+++.|++.++ .+++++.+|+++++.+..+. ++..|||++ ++|++||
T Consensus 53 I~~I~d~ig~~~sG~~~D~~~lv~~~r~~a~~~~~~~~~~~~~v~~la~~~tq~~~~~~---~~~~RP~gv--s~Li~G~ 127 (228)
T TIGR03691 53 ISELYDRIGFAAVGKYNEFENLRRAGIRYADMRGYSYDRRDVTGRGLANAYAQTLGTIF---TEQQKPYEV--EICVAEV 127 (228)
T ss_pred EEEecCCEEEEEcCCHHHHHHHHHHHHHHHHHHhhhcCCCCccHHHHHHHHHhhccccc---ccccCcceE--EEEEEEE
Confidence 99999999999999999999999999999999999998 68999999987777666544 235799995 6899999
Q ss_pred ec-CCCCeEEEEcCCceEEecC-eeeEccChHHHHHHHHhhCCCCCCHHHHHHHHHHHHHHHH--HhcCcCCCcEEEEEE
Q psy14210 207 DE-ILGPQLYMLDNTGLLIEGT-KFCVGSGAEYAQAILDTDYRPDLSEEEAYALATSAIYHAC--RRDIHSGGCVRLYKI 282 (312)
Q Consensus 207 D~-~~gp~Ly~iDpsGs~~e~~-~~AiGsGs~~a~~~Le~~y~~~ms~eEAi~la~kaL~~a~--~rD~~sg~~ieI~iI 282 (312)
|+ +.+|+||.+||+|++.+++ ++|+|+|+..++++||++|+++||+|||++++++||+.+. ++|..++.++||+++
T Consensus 128 d~~~~gp~Ly~vDpsG~~~~~~~~~aiG~gs~~a~~~Lek~y~~~ms~eeai~la~~aL~~~~~~~r~~~~~~~iEv~ii 207 (228)
T TIGR03691 128 GETPDQDQLYRITFDGSIVDERGFVVMGGTTEPIATALKESYRDGLSLADALGLAVQALRAGGNGEKRELDAASLEVAVL 207 (228)
T ss_pred cCCCCCCEEEEECCCCCceeccceEEECCChHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHhccccccCCccceEEEEE
Confidence 85 4689999999999999976 7999999999999999999999999999999999999995 466789999999999
Q ss_pred ECCC----eEEeChhHHHHHH
Q psy14210 283 NGQG----WQQVLSRDVKDIY 299 (312)
Q Consensus 283 tk~G----~~~l~~~eI~~~l 299 (312)
++++ +++++++||++++
T Consensus 208 ~k~~~~~~f~~l~~~ei~~~l 228 (228)
T TIGR03691 208 DRSRPRRAFRRITGEALERLL 228 (228)
T ss_pred eCCCCccceEECCHHHHHhhC
Confidence 9754 9999999999874
No 33
>KOG0178|consensus
Probab=100.00 E-value=3.2e-37 Score=268.70 Aligned_cols=178 Identities=21% Similarity=0.311 Sum_probs=167.4
Q ss_pred ceEEEecCeEEEEEeCChhHHHHHHHHHHHHhhhhhhhcCCccCHHHHHHHHHHHHHHhccCCCCCCCCCCcccceeeeE
Q psy14210 126 FQVIPVSSSILCTLAGNAADCVYWLHSLAKECKGYECKYRTGMTIRHAANLLVNMVRKYRTGNHSSKIPNGLSFGTLMAA 205 (312)
Q Consensus 126 ~KI~~I~d~i~~a~sG~~aD~q~l~~~lr~~~~~~~~~~g~~i~v~~la~~ls~~l~~~~~~~~~~~rP~gls~~~IIaG 205 (312)
+||++|+|+|+|+.+|+.+|+..|++++|..+|.|.++|++++|++.|+..++++.|.||| |+|.||||+ ++|.+|
T Consensus 63 EKiY~l~d~iaC~vaGlt~DAnvL~n~aRi~AQ~yl~~y~e~iP~eqLv~~lcdiKQayTQ--ygG~RPFGV--SfLYaG 138 (249)
T KOG0178|consen 63 EKIYKLNDNIACAVAGLTSDANVLKNYARIIAQRYLFRYGEEIPCEQLVTFLCDIKQAYTQ--YGGKRPFGV--SFLYAG 138 (249)
T ss_pred HHhhhcCCceEEEEecccccHHHHHHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHHhh--ccCcCCCce--eeeeec
Confidence 3499999999999999999999999999999999999999999999999999999999999 999999995 679999
Q ss_pred EecCCCCeEEEEcCCceEEecCeeeEccChHHHHHHHHhhCCCCCC-HHHHHHHHHHHHHHHHHhcCcCCCcEEEEEEEC
Q psy14210 206 YDEILGPQLYMLDNTGLLIEGTKFCVGSGAEYAQAILDTDYRPDLS-EEEAYALATSAIYHACRRDIHSGGCVRLYKING 284 (312)
Q Consensus 206 ~D~~~gp~Ly~iDpsGs~~e~~~~AiGsGs~~a~~~Le~~y~~~ms-~eEAi~la~kaL~~a~~rD~~sg~~ieI~iItk 284 (312)
||...|.+||+.||||++..|++.++|.++..++.+|++.|+.+.. ++||+.+|++.|..+.+.+..+...+||+.+++
T Consensus 139 wd~~~gyqLy~SdPSGny~gWka~ciG~N~~Aa~s~Lkqdykdd~~~~~eA~~laikvL~kt~d~~~lt~eklEia~~~k 218 (249)
T KOG0178|consen 139 WDDRYGYQLYQSDPSGNYGGWKATCIGANSGAAQSMLKQDYKDDENDLEEAKALAIKVLSKTLDSGSLTAEKLEIATITK 218 (249)
T ss_pred eecCcceEEEecCCCCCccccceeeeccchHHHHHHHHhhhccccccHHHHHHHHHHHHHhhcccCCCChhheEEEEEEe
Confidence 9997789999999999999999999999999999999999998755 999999999999999999989999999999998
Q ss_pred CC----eEEeChhHHHHHHHHHhcCCC
Q psy14210 285 QG----WQQVLSRDVKDIYNDRKEAPP 307 (312)
Q Consensus 285 ~G----~~~l~~~eI~~~l~~~~~~~~ 307 (312)
+. ++++.++||.+++++..+..+
T Consensus 219 ~~~k~v~~i~~~~ev~kll~k~~~~~~ 245 (249)
T KOG0178|consen 219 DCNKTVLKILKKDEVLKLLEKYHETQR 245 (249)
T ss_pred cCCceEEEecCHHHHHHHHHHhhhhhh
Confidence 53 577899999999999876654
No 34
>KOG0181|consensus
Probab=100.00 E-value=1.4e-37 Score=268.14 Aligned_cols=204 Identities=20% Similarity=0.377 Sum_probs=193.6
Q ss_pred cccCceEEEEEcCCeEEEEEcCCccCCcccccccccccccccCCCcccccCccccCCcccCCCccccccccccccccccC
Q psy14210 2 FITGTTTLGFRYPEGIILATDSRATANDLIVSQKLNKFCQSSLGDSCELLHPVYTGGERCGQSYSQRSHCVAETQQDHFL 81 (312)
Q Consensus 2 ~~~g~t~~~~~~~~gv~~~~d~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (312)
+..|.|.+|++..||||||++++..+ .++....++|
T Consensus 29 v~~G~~SvGi~A~nGvVlatekk~~s-~L~~~~sv~K------------------------------------------- 64 (233)
T KOG0181|consen 29 VVNGQTSVGIKAANGVVLATEKKDVS-PLVDEESVRK------------------------------------------- 64 (233)
T ss_pred HhCCCCceeeeecCceEEEeccCCCC-ccchhhhhhh-------------------------------------------
Confidence 35789999999999999999998887 7888888888
Q ss_pred CCCCCCCccccccCCccccccccccCCccccCCCCCCCCCCCCcceEEEecCeEEEEEeCChhHHHHHHHHHHHHhhhhh
Q psy14210 82 SPPLSQSSQHIISGDSCELLHPVYTGGERCGPFSQSSTVPHNTSFQVIPVSSSILCTLAGNAADCVYWLHSLAKECKGYE 161 (312)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~dgVv~~~~~~~~~~~~~~~~KI~~I~d~i~~a~sG~~aD~q~l~~~lr~~~~~~~ 161 (312)
+++|.+||+|..||+.+|++.+++..|+.++.|.
T Consensus 65 ----------------------------------------------V~~i~~~IG~vYSGmgpD~RvlV~~~rkiAe~Yy 98 (233)
T KOG0181|consen 65 ----------------------------------------------VEKITPHIGCVYSGMGPDYRVLVHKSRKIAEQYY 98 (233)
T ss_pred ----------------------------------------------HhhccCCcceEEecCCCceeehhhHHHHHHHHHH
Confidence 8999999999999999999999999999999999
Q ss_pred hhcCCccCHHHHHHHHHHHHHHhccCCCCCCCCCCcccceeeeEEecCCCCeEEEEcCCceEEecCeeeEccChHHHHHH
Q psy14210 162 CKYRTGMTIRHAANLLVNMVRKYRTGNHSSKIPNGLSFGTLMAAYDEILGPQLYMLDNTGLLIEGTKFCVGSGAEYAQAI 241 (312)
Q Consensus 162 ~~~g~~i~v~~la~~ls~~l~~~~~~~~~~~rP~gls~~~IIaG~D~~~gp~Ly~iDpsGs~~e~~~~AiGsGs~~a~~~ 241 (312)
..|++++++..+...++..+|+||| ++|.|||| ++++|||||+ ++|.||++||+|+++.|+++|+|.+...++.+
T Consensus 99 ~vY~e~~pt~qlv~~~asvmQEyTq--sgGvrPFG--vslliaG~~~-~~p~LyQvdPSGsyf~wkatA~Gkn~v~aktF 173 (233)
T KOG0181|consen 99 RVYGEPIPTTQLVQEVASVMQEYTQ--SGGVRPFG--VSLLIAGWDE-GGPLLYQVDPSGSYFAWKATAMGKNYVNAKTF 173 (233)
T ss_pred HHhcCCCCHHHHHHHHHHHHHHHhh--cCCccccc--eEEEEeecCC-CceeEEEECCccceeehhhhhhccCcchHHHH
Confidence 9999999999999999999999999 99999999 4689999998 79999999999999999999999999999999
Q ss_pred HHhhCCCCCCHHHHHHHHHHHHHHHHHhcCcCCCcEEEEEEECCCeEEeChhHHHHHHHH
Q psy14210 242 LDTDYRPDLSEEEAYALATSAIYHACRRDIHSGGCVRLYKINGQGWQQVLSRDVKDIYND 301 (312)
Q Consensus 242 Le~~y~~~ms~eEAi~la~kaL~~a~~rD~~sg~~ieI~iItk~G~~~l~~~eI~~~l~~ 301 (312)
||++|.++|.+++++..|+..|++.++-. .+.++|||+++..++|++++++||++++..
T Consensus 174 lEkR~~edleldd~ihtailtlkE~fege-~~~~nieigv~~~~~F~~lt~~eI~d~l~~ 232 (233)
T KOG0181|consen 174 LEKRYNEDLELDDAIHTAILTLKESFEGE-MTAKNIEIGVCGENGFRRLTPAEIEDYLAS 232 (233)
T ss_pred HHHHhccccccchHHHHHHHHHHHHhccc-cccCceEEEEecCCceeecCHHHHHHHHhc
Confidence 99999999999999999999999999766 577999999999999999999999999864
No 35
>KOG0185|consensus
Probab=100.00 E-value=2.7e-37 Score=272.92 Aligned_cols=210 Identities=21% Similarity=0.282 Sum_probs=193.7
Q ss_pred cccCceEEEEEcCCeEEEEEcCCccCCcccccccccccccccCCCcccccCccccCCcccCCCccccccccccccccccC
Q psy14210 2 FITGTTTLGFRYPEGIILATDSRATANDLIVSQKLNKFCQSSLGDSCELLHPVYTGGERCGQSYSQRSHCVAETQQDHFL 81 (312)
Q Consensus 2 ~~~g~t~~~~~~~~gv~~~~d~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (312)
+.||||+||+||+||||||||++.|+|++.+.++++|
T Consensus 38 ~vTGTSVla~ky~~GVviaaD~lgSYGslaR~~nVeR------------------------------------------- 74 (256)
T KOG0185|consen 38 IVTGTSVLALKYKDGVVIAADTLGSYGSLARYKNVER------------------------------------------- 74 (256)
T ss_pred eeccceEEEEEecCceEEEecccccchhhhhhcCcee-------------------------------------------
Confidence 5799999999999999999999999999999999999
Q ss_pred CCCCCCCccccccCCccccccccccCCccccCCCCCCCCCCCCcceEEEecCeEEEEEeCChhHHHHHHHHHHHHhhhhh
Q psy14210 82 SPPLSQSSQHIISGDSCELLHPVYTGGERCGPFSQSSTVPHNTSFQVIPVSSSILCTLAGNAADCVYWLHSLAKECKGYE 161 (312)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~dgVv~~~~~~~~~~~~~~~~KI~~I~d~i~~a~sG~~aD~q~l~~~lr~~~~~~~ 161 (312)
||+|+||++++++|..+|+|.+.+.|.....+.+
T Consensus 75 ----------------------------------------------i~kVgdntllG~sGdisD~Q~i~r~L~~l~iedn 108 (256)
T KOG0185|consen 75 ----------------------------------------------IFKVGDNTLLGASGDISDFQYIQRVLEQLVIEDN 108 (256)
T ss_pred ----------------------------------------------eEEecCceEEecCccHHHHHHHHHHHHHHHhccc
Confidence 8999999999999999999999999988766544
Q ss_pred -hhcCCccCHHHHHHHHHHHHHHhccCCCCCCCCCCcccceeeeEEecCCCCeEEEEcCCceEEecCeeeEccChHHHHH
Q psy14210 162 -CKYRTGMTIRHAANLLVNMVRKYRTGNHSSKIPNGLSFGTLMAAYDEILGPQLYMLDNTGLLIEGTKFCVGSGAEYAQA 240 (312)
Q Consensus 162 -~~~g~~i~v~~la~~ls~~l~~~~~~~~~~~rP~gls~~~IIaG~D~~~gp~Ly~iDpsGs~~e~~~~AiGsGs~~a~~ 240 (312)
+..++.+.|+.++.+|.++||.+|. ++.| +|..+++||+|+.+.|+|.++|..|..++.+..|+|.|.+.+++
T Consensus 109 ~~~Dg~~l~Pk~ih~yltrvlY~rRs----KmnP--lwntlvVgGv~~~g~~~lg~V~~~G~~Y~~~~vATGfg~hLa~P 182 (256)
T KOG0185|consen 109 RLDDGQSLGPKAIHSYLTRVLYARRS----KMNP--LWNTLVVGGVDNTGEPFLGYVDLLGVAYESPVVATGFGAHLALP 182 (256)
T ss_pred ccccccccChHHHHHHHHHHHHHhhh----ccCc--hhhheeEeeecCCCCeeEEEEeeccccccCchhhhhhHHHhhhH
Confidence 5667899999999999999999998 6899 77899999999877899999999999999999999999999999
Q ss_pred HHHhhCC---CCCCHHHHHHHHHHHHHHHHHhcCcCCCcEEEEEEECCCeEEeChhHHHHHHHHHhcCCC
Q psy14210 241 ILDTDYR---PDLSEEEAYALATSAIYHACRRDIHSGGCVRLYKINGQGWQQVLSRDVKDIYNDRKEAPP 307 (312)
Q Consensus 241 ~Le~~y~---~~ms~eEAi~la~kaL~~a~~rD~~sg~~ieI~iItk~G~~~l~~~eI~~~l~~~~~~~~ 307 (312)
+|++.|+ ++++.|||.+++.+||+.+++||+.+.++++|++|+++|++.-.+.+|+.- |.+++..-
T Consensus 183 ~lR~~~~~k~~~~s~eeA~~li~~cMrVL~YRD~ra~n~fqva~v~~eGv~i~~p~qv~~~-W~fa~~~~ 251 (256)
T KOG0185|consen 183 LLRDEWEKKGEDLSREEAEALIEKCMRVLYYRDARASNEFQVATVDEEGVTISKPYQVKTN-WDFAETIK 251 (256)
T ss_pred HHHHhhhccchhhHHHHHHHHHHHHHHHHhccccccccceEEEEEcccceEecCceeeeec-chhhhhcc
Confidence 9999997 689999999999999999999999999999999999999999999888843 45554443
No 36
>KOG0183|consensus
Probab=100.00 E-value=1.4e-36 Score=265.34 Aligned_cols=206 Identities=18% Similarity=0.370 Sum_probs=192.4
Q ss_pred cccCceEEEEEcCCeEEEEEcCCccCCcccccccccccccccCCCcccccCccccCCcccCCCccccccccccccccccC
Q psy14210 2 FITGTTTLGFRYPEGIILATDSRATANDLIVSQKLNKFCQSSLGDSCELLHPVYTGGERCGQSYSQRSHCVAETQQDHFL 81 (312)
Q Consensus 2 ~~~g~t~~~~~~~~gv~~~~d~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (312)
+..|+|++|++.+|.|+|+.+++... .|...+.++|
T Consensus 27 vrkGstaVgvrg~~~vvlgvEkkSv~-~Lq~~r~~rk------------------------------------------- 62 (249)
T KOG0183|consen 27 VRKGSTAVGVRGNNCVVLGVEKKSVP-KLQDERTVRK------------------------------------------- 62 (249)
T ss_pred HhcCceEEEeccCceEEEEEeecchh-hhhhhhhhhh-------------------------------------------
Confidence 35799999999999999999998665 8888888888
Q ss_pred CCCCCCCccccccCCccccccccccCCccccCCCCCCCCCCCCcceEEEecCeEEEEEeCChhHHHHHHHHHHHHhhhhh
Q psy14210 82 SPPLSQSSQHIISGDSCELLHPVYTGGERCGPFSQSSTVPHNTSFQVIPVSSSILCTLAGNAADCVYWLHSLAKECKGYE 161 (312)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~dgVv~~~~~~~~~~~~~~~~KI~~I~d~i~~a~sG~~aD~q~l~~~lr~~~~~~~ 161 (312)
|..+++|++|+++|+.+|++.+++++|.+|+.|+
T Consensus 63 ----------------------------------------------I~~ld~hV~mafaGl~aDArilinrArvecqShr 96 (249)
T KOG0183|consen 63 ----------------------------------------------ISMLDDHVVMAFAGLTADARILINRARVECQSHR 96 (249)
T ss_pred ----------------------------------------------heeecceeeEEecCCCccceeehhhHhHhhhhhh
Confidence 7889999999999999999999999999999999
Q ss_pred hhcCCccCHHHHHHHHHHHHHHhccCCCCCCCCCCcccceeeeEEecCCCCeEEEEcCCceEEecCeeeEccChHHHHHH
Q psy14210 162 CKYRTGMTIRHAANLLVNMVRKYRTGNHSSKIPNGLSFGTLMAAYDEILGPQLYMLDNTGLLIEGTKFCVGSGAEYAQAI 241 (312)
Q Consensus 162 ~~~g~~i~v~~la~~ls~~l~~~~~~~~~~~rP~gls~~~IIaG~D~~~gp~Ly~iDpsGs~~e~~~~AiGsGs~~a~~~ 241 (312)
++...|++++.++++++.+.|.||+ ..|+||||+ +.||+|||+++.|.||++||+|.+.+|++.|||.+++.+..+
T Consensus 97 lt~edpvtveyitRyiA~~kQrYTq--s~grRPFGv--s~Li~GfD~~g~p~lyqtePsG~f~ewka~aiGr~sk~VrEf 172 (249)
T KOG0183|consen 97 LTLEDPVTVEYITRYIAGLKQRYTQ--SNGRRPFGV--STLIGGFDPDGTPRLYQTEPSGIFSEWKANAIGRSSKTVREF 172 (249)
T ss_pred cccCCCcHHHHHHHHHHHhhhhhhc--cCCcccccc--eEEEEeeCCCCCeeeEeeCCCcchhhhhccccccccHHHHHH
Confidence 9999999999999999999999999 899999996 569999999778999999999999999999999999999999
Q ss_pred HHhhCCCC--CCHHHHHHHHHHHHHHHHHhcCcCCCcEEEEEEECCC-eEEeChhHHHHHHHHHhc
Q psy14210 242 LDTDYRPD--LSEEEAYALATSAIYHACRRDIHSGGCVRLYKINGQG-WQQVLSRDVKDIYNDRKE 304 (312)
Q Consensus 242 Le~~y~~~--ms~eEAi~la~kaL~~a~~rD~~sg~~ieI~iItk~G-~~~l~~~eI~~~l~~~~~ 304 (312)
||++|.+. .+..|+++|++++|.++... .++++|+++++..+ ++.++.++|+.++..++.
T Consensus 173 lEK~y~e~~~~~~~~~ikL~ir~LleVvqs---~~~nie~aVm~~~~~~~~l~~~~I~~~v~~ie~ 235 (249)
T KOG0183|consen 173 LEKNYKEEAIATEGETIKLAIRALLEVVQS---GGKNIEVAVMKRRKDLKMLESEEIDDIVKEIEQ 235 (249)
T ss_pred HHHhcccccccccccHHHHHHHHHHHHhhc---CCCeeEEEEEecCCceeecCHHHHHHHHHHHHH
Confidence 99999876 78999999999999998874 46899999999976 999999999999987753
No 37
>KOG0173|consensus
Probab=100.00 E-value=7.6e-35 Score=259.77 Aligned_cols=189 Identities=26% Similarity=0.394 Sum_probs=180.0
Q ss_pred ccCceEEEEEcCCeEEEEEcCCccCCcccccccccccccccCCCcccccCccccCCcccCCCccccccccccccccccCC
Q psy14210 3 ITGTTTLGFRYPEGIILATDSRATANDLIVSQKLNKFCQSSLGDSCELLHPVYTGGERCGQSYSQRSHCVAETQQDHFLS 82 (312)
Q Consensus 3 ~~g~t~~~~~~~~gv~~~~d~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (312)
.|||||+|+.|+||||||+|+|+|.|..+..++.+|
T Consensus 35 kTGTtIvgv~~k~gvIlgADtRaT~G~IvaDKnC~K-------------------------------------------- 70 (271)
T KOG0173|consen 35 KTGTTIVGVIFKDGVILGADTRATEGPIVADKNCEK-------------------------------------------- 70 (271)
T ss_pred ccCcEEEEEEeCCeEEEeecccccCCCeeecchhHH--------------------------------------------
Confidence 589999999999999999999999999999998888
Q ss_pred CCCCCCccccccCCccccccccccCCccccCCCCCCCCCCCCcceEEEecCeEEEEEeCChhHHHHHHHHHHHHhhhhhh
Q psy14210 83 PPLSQSSQHIISGDSCELLHPVYTGGERCGPFSQSSTVPHNTSFQVIPVSSSILCTLAGNAADCVYWLHSLAKECKGYEC 162 (312)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~dgVv~~~~~~~~~~~~~~~~KI~~I~d~i~~a~sG~~aD~q~l~~~lr~~~~~~~~ 162 (312)
|+.|.++|+||.+|.++|...+.+.+..+++.|++
T Consensus 71 ---------------------------------------------IH~ia~~IyccGAGtAADte~vt~m~ss~l~Lh~l 105 (271)
T KOG0173|consen 71 ---------------------------------------------IHFIAPNIYCCGAGTAADTEMVTRMISSNLELHRL 105 (271)
T ss_pred ---------------------------------------------HhhcccceEEccCCchhhHHHHHHHHHHHHHHHHh
Confidence 89999999999999999999999999999999999
Q ss_pred hcCCccCHHHHHHHHHHHHHHhccCCCCCCCCCCcccceeeeEEecCCCCeEEEEcCCceEEecCeeeEccChHHHHHHH
Q psy14210 163 KYRTGMTIRHAANLLVNMVRKYRTGNHSSKIPNGLSFGTLMAAYDEILGPQLYMLDNTGLLIEGTKFCVGSGAEYAQAIL 242 (312)
Q Consensus 163 ~~g~~i~v~~la~~ls~~l~~~~~~~~~~~rP~gls~~~IIaG~D~~~gp~Ly~iDpsGs~~e~~~~AiGsGs~~a~~~L 242 (312)
+.++.+.|-.+.+++.+.+++|.- .+.+.+|+||+|. .||+||++.|.|+...-+|.++|||+..+.++|
T Consensus 106 ~t~R~~rVv~A~~mlkQ~LFrYqG---------~IgA~LiiGGvD~-TGpHLy~i~phGStd~~Pf~alGSGslaAmsvl 175 (271)
T KOG0173|consen 106 NTGRKPRVVTALRMLKQHLFRYQG---------HIGAALILGGVDP-TGPHLYSIHPHGSTDKLPFTALGSGSLAAMSVL 175 (271)
T ss_pred ccCCCCceeeHHHHHHHHHHHhcC---------cccceeEEccccC-CCCceEEEcCCCCcCccceeeeccchHHHHHHH
Confidence 999999999999999999999887 2568899999999 899999999999999999999999999999999
Q ss_pred HhhCCCCCCHHHHHHHHHHHHHHHHHhcCcCCCcEEEEEEECCCeEEe
Q psy14210 243 DTDYRPDLSEEEAYALATSAIYHACRRDIHSGGCVRLYKINGQGWQQV 290 (312)
Q Consensus 243 e~~y~~~ms~eEAi~la~kaL~~a~~rD~~sg~~ieI~iItk~G~~~l 290 (312)
|..|+|||++|||++|+.+|+...+..|..+|+++++++|++.+++.+
T Consensus 176 Esr~k~dlt~eea~~Lv~eAi~AGi~nDLgSGsnvdlcVI~~~~~~~l 223 (271)
T KOG0173|consen 176 ESRWKPDLTKEEAIKLVCEAIAAGIFNDLGSGSNVDLCVITKKGVEYL 223 (271)
T ss_pred HHhcCcccCHHHHHHHHHHHHHhhhccccCCCCceeEEEEeCCCcccc
Confidence 999999999999999999999999999999999999999998776543
No 38
>KOG0863|consensus
Probab=100.00 E-value=5.1e-34 Score=251.60 Aligned_cols=217 Identities=19% Similarity=0.232 Sum_probs=203.9
Q ss_pred cccccccccccccccCCCCCCCCccccccCCccccccccccCCccccCCCCCCCCCCCCcceEEEecCeEEEEEeCChhH
Q psy14210 66 SQRSHCVAETQQDHFLSPPLSQSSQHIISGDSCELLHPVYTGGERCGPFSQSSTVPHNTSFQVIPVSSSILCTLAGNAAD 145 (312)
Q Consensus 66 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dgVv~~~~~~~~~~~~~~~~KI~~I~d~i~~a~sG~~aD 145 (312)
-|++||..+.+|++ --||++.++..|+.+.++-.+.++..|.|||+||+|++++++|+++|
T Consensus 20 ~QvEya~EavkqGs-------------------atVGLks~thaVLvAl~r~~seLss~QkKi~~iD~h~g~siAGLt~D 80 (264)
T KOG0863|consen 20 HQVEYAMEAVKQGS-------------------ATVGLKSRTHAVLVALKRAQSELSSHQKKIFKIDDHIGISIAGLTAD 80 (264)
T ss_pred hHHHHHHHHHhccc-------------------ceEeecccceEEEeeeccchhHHHHhhheeEecccccceEEeccCcc
Confidence 39999999999999 46899999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhhhhhhhcCCccCHHHHHHHHHHHHHHhccCCCCCCCCCCcccceeeeEEecCCCCeEEEEcCCceEEe
Q psy14210 146 CVYWLHSLAKECKGYECKYRTGMTIRHAANLLVNMVRKYRTGNHSSKIPNGLSFGTLMAAYDEILGPQLYMLDNTGLLIE 225 (312)
Q Consensus 146 ~q~l~~~lr~~~~~~~~~~g~~i~v~~la~~ls~~l~~~~~~~~~~~rP~gls~~~IIaG~D~~~gp~Ly~iDpsGs~~e 225 (312)
++.|.++++.+|..+++.+++++++..+...|.+.+|.+|+ +.++|||| ++++++|||+ .||+||.++|+|++++
T Consensus 81 arvl~~Ylr~ec~~~~~~~~r~~pv~rl~~~l~~k~q~~Tq--~ygrRpYG--VGllv~gYDe-~G~hl~e~~Psg~v~e 155 (264)
T KOG0863|consen 81 ARVLSRYLRQECLNSRFIYGRPLPVLRLVEDLGDKAQENTQ--RYGRRPYG--VGLLVAGYDE-SGPHLYEFCPSGNVFE 155 (264)
T ss_pred hHHHHHHHHHHHhhhhhccCCcccHHHHHHHHHHHHhhhhh--hhCCcccc--ceEEEEeecC-CCceeEEEcCCccEEE
Confidence 99999999999999999999999999999999999999999 99999999 4899999998 7999999999999999
Q ss_pred cCeeeEccChHHHHHHHHhhCC--CCCCHHHHHHHHHHHHHHHHHhc-CcCCCcEEEEEEECC-CeEEeChhHHHHHHHH
Q psy14210 226 GTKFCVGSGAEYAQAILDTDYR--PDLSEEEAYALATSAIYHACRRD-IHSGGCVRLYKINGQ-GWQQVLSRDVKDIYND 301 (312)
Q Consensus 226 ~~~~AiGsGs~~a~~~Le~~y~--~~ms~eEAi~la~kaL~~a~~rD-~~sg~~ieI~iItk~-G~~~l~~~eI~~~l~~ 301 (312)
++.++||+.++.++++||++.. ++++.||.++.++.||+.+...| ..++.+++|+|+.++ .|+.++.+++.+++..
T Consensus 156 ~~g~sIGsRSQsARTyLEr~~e~f~~~~~eELI~~gi~Alr~tlp~de~lt~~nvsI~Ivgkd~pf~~~d~~~~~k~~~~ 235 (264)
T KOG0863|consen 156 CKGMSIGSRSQSARTYLERNLEEFEDSSPEELIKHGIMALRETLPEDEDLTGENVSIAIVGKDEPFTILDQKDVAKYVDL 235 (264)
T ss_pred EeeeecccchhhHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhhcCcccccccceeEEEEEeCCCceEeecHHHHHHHHHH
Confidence 9999999999999999999887 59999999999999999999744 678899999999997 6999999999999887
Q ss_pred HhcCC
Q psy14210 302 RKEAP 306 (312)
Q Consensus 302 ~~~~~ 306 (312)
+++.+
T Consensus 236 ~~~~~ 240 (264)
T KOG0863|consen 236 FKKVD 240 (264)
T ss_pred hhcCC
Confidence 65433
No 39
>KOG0179|consensus
Probab=100.00 E-value=1.4e-32 Score=239.46 Aligned_cols=190 Identities=26% Similarity=0.277 Sum_probs=179.7
Q ss_pred ccCceEEEEEcCCeEEEEEcCCccCCcccccccccccccccCCCcccccCccccCCcccCCCccccccccccccccccCC
Q psy14210 3 ITGTTTLGFRYPEGIILATDSRATANDLIVSQKLNKFCQSSLGDSCELLHPVYTGGERCGQSYSQRSHCVAETQQDHFLS 82 (312)
Q Consensus 3 ~~g~t~~~~~~~~gv~~~~d~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (312)
.+|+|++||+..|..|+|+|+|.+.|.-|.+|...|
T Consensus 27 ~NGGT~vaIaG~dFavvA~DTR~s~gy~I~sR~~~K-------------------------------------------- 62 (235)
T KOG0179|consen 27 DNGGTTVAIAGEDFAVVAGDTRMSSGYNINSRDQSK-------------------------------------------- 62 (235)
T ss_pred cCCceEEEEcCCceEEEecccccccceeeeccccch--------------------------------------------
Confidence 579999999999999999999999999999998888
Q ss_pred CCCCCCccccccCCccccccccccCCccccCCCCCCCCCCCCcceEEEecCeEEEEEeCChhHHHHHHHHHHHHhhhhhh
Q psy14210 83 PPLSQSSQHIISGDSCELLHPVYTGGERCGPFSQSSTVPHNTSFQVIPVSSSILCTLAGNAADCVYWLHSLAKECKGYEC 162 (312)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~dgVv~~~~~~~~~~~~~~~~KI~~I~d~i~~a~sG~~aD~q~l~~~lr~~~~~~~~ 162 (312)
||+++|+++++.+|++||+..|.+.++.+++.|++
T Consensus 63 ---------------------------------------------i~~l~D~~vl~~sGF~aD~l~L~k~i~~r~~~Y~~ 97 (235)
T KOG0179|consen 63 ---------------------------------------------IFKLGDNIVLGSSGFYADTLALVKVIKSRIKQYEH 97 (235)
T ss_pred ---------------------------------------------heeccCceEEecccchhhHHHHHHHHHHHHHHHhh
Confidence 89999999999999999999999999999999999
Q ss_pred hcCCccCHHHHHHHHHHHHHHhccCCCCCCCCCCcccceeeeEEecCCCCeEEEEcCCceEEecCeeeEccChHHHHHHH
Q psy14210 163 KYRTGMTIRHAANLLVNMVRKYRTGNHSSKIPNGLSFGTLMAAYDEILGPQLYMLDNTGLLIEGTKFCVGSGAEYAQAIL 242 (312)
Q Consensus 163 ~~g~~i~v~~la~~ls~~l~~~~~~~~~~~rP~gls~~~IIaG~D~~~gp~Ly~iDpsGs~~e~~~~AiGsGs~~a~~~L 242 (312)
.++..|++..+|+.|+.+||.+|. .||. +..|++|+|+++++.+|+.||.|++.+..+.|-|+++.+++|+|
T Consensus 98 ~h~k~ms~~s~A~lls~~LY~kRF------FPYY--v~~ilaGiDeeGKG~VySyDPvGsyer~~~~AgGsa~~mI~PfL 169 (235)
T KOG0179|consen 98 DHNKKMSIHSAAQLLSTILYSKRF------FPYY--VFNILAGIDEEGKGAVYSYDPVGSYERVTCRAGGSAASMIQPFL 169 (235)
T ss_pred cccccccHHHHHHHHHHHHhhccc------ccce--eeeeeecccccCceeEEeecCCcceeeeeeecCCcchhhhhhhh
Confidence 999999999999999999999998 8876 56799999998899999999999999999999999999999999
Q ss_pred HhhCC-----------CCCCHHHHHHHHHHHHHHHHHhcCcCCCcEEEEEEECCCeEE
Q psy14210 243 DTDYR-----------PDLSEEEAYALATSAIYHACRRDIHSGGCVRLYKINGQGWQQ 289 (312)
Q Consensus 243 e~~y~-----------~~ms~eEAi~la~kaL~~a~~rD~~sg~~ieI~iItk~G~~~ 289 (312)
++... ..+|+|||++|++++|..|.+||+.+|+.++|+|++++|++.
T Consensus 170 DnQi~~kn~~~e~~~~~~Ls~e~ai~lv~d~F~SAaERdI~tGD~l~i~I~tk~gV~~ 227 (235)
T KOG0179|consen 170 DNQIGHKNQNLENAERTPLSLERAIRLVKDAFTSAAERDIYTGDKLEICIITKDGVEV 227 (235)
T ss_pred hhhccCcCcccccCcccccCHHHHHHHHHHHhhhhhhcccccCCcEEEEEEecCCEEE
Confidence 98643 358999999999999999999999999999999999999764
No 40
>KOG0177|consensus
Probab=100.00 E-value=9.7e-33 Score=237.21 Aligned_cols=170 Identities=23% Similarity=0.310 Sum_probs=160.2
Q ss_pred CCCCCCCCcceEEEecCeEEEEEeCChhHHHHHHHHHHHHhhhhhhhcCCccCHHHHHHHHHHHHHHhccCCCCCCCCCC
Q psy14210 117 SSTVPHNTSFQVIPVSSSILCTLAGNAADCVYWLHSLAKECKGYECKYRTGMTIRHAANLLVNMVRKYRTGNHSSKIPNG 196 (312)
Q Consensus 117 ~~~~~~~~~~KI~~I~d~i~~a~sG~~aD~q~l~~~lr~~~~~~~~~~g~~i~v~~la~~ls~~l~~~~~~~~~~~rP~g 196 (312)
++.+++++++|+++++++++|+++|..+|+..+.+++.+.++.|++++|.+++|+.+|+++++.+..+.+ +++||.
T Consensus 24 si~~~k~~~dK~~~ls~~~lm~~~Ge~GDt~qF~eyi~~Ni~LYkirnGyeLSp~~aahFtR~~La~~LR----sr~~yq 99 (200)
T KOG0177|consen 24 SILVLKDDHDKIHRLSDHILMATVGEAGDTVQFTEYIQKNIQLYKIRNGYELSPSAAAHFTRRELAESLR----SRTPYQ 99 (200)
T ss_pred ceEEecccccceEEeccceeeeeecCCCceehHHHHHHhhhhHHhhhcCCcCCHHHHHHHHHHHHHHHHh----cCCCce
Confidence 4455667777799999999999999999999999999999999999999999999999999999999888 579988
Q ss_pred cccceeeeEEecCCCCeEEEEcCCceEEecCeeeEccChHHHHHHHHhhCCCCCCHHHHHHHHHHHHHHHHHhcCcCCCc
Q psy14210 197 LSFGTLMAAYDEILGPQLYMLDNTGLLIEGTKFCVGSGAEYAQAILDTDYRPDLSEEEAYALATSAIYHACRRDIHSGGC 276 (312)
Q Consensus 197 ls~~~IIaG~D~~~gp~Ly~iDpsGs~~e~~~~AiGsGs~~a~~~Le~~y~~~ms~eEAi~la~kaL~~a~~rD~~sg~~ 276 (312)
+++|+||+|+..+|.||++|..|+..+.++.+.|.++.|+.++|+++|+|+||.|||+++..+|+.++.+|-...-.+
T Consensus 100 --V~~LvaGYd~~~gp~L~~iDyla~~~~vpy~~hGy~~~f~~sIlDr~Y~pdmt~eea~~lmkKCv~El~kRlvin~~~ 177 (200)
T KOG0177|consen 100 --VNILVAGYDPEEGPELYYIDYLATLVSVPYAAHGYGSYFCLSILDRYYKPDMTIEEALDLMKKCVLELKKRLVINLPG 177 (200)
T ss_pred --EEEEEeccCCCCCCceeeehhhhhcccCCcccccchhhhhHHHHHhhhCCCCCHHHHHHHHHHHHHHHHHhcccCCCC
Confidence 468999999988999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEEEECCCeEEeCh
Q psy14210 277 VRLYKINGQGWQQVLS 292 (312)
Q Consensus 277 ieI~iItk~G~~~l~~ 292 (312)
+.+.+|+|||++.++.
T Consensus 178 f~v~IVdkdGir~~~~ 193 (200)
T KOG0177|consen 178 FIVKIVDKDGIRKLDD 193 (200)
T ss_pred cEEEEEcCCCceeccc
Confidence 9999999999998754
No 41
>PRK05456 ATP-dependent protease subunit HslV; Provisional
Probab=100.00 E-value=1.9e-32 Score=238.83 Aligned_cols=167 Identities=22% Similarity=0.267 Sum_probs=145.0
Q ss_pred CceEEEEEcCCeEEEEEcCCccCCcccccccccccccccCCCcccccCccccCCcccCCCccccccccccccccccCCCC
Q psy14210 5 GTTTLGFRYPEGIILATDSRATANDLIVSQKLNKFCQSSLGDSCELLHPVYTGGERCGQSYSQRSHCVAETQQDHFLSPP 84 (312)
Q Consensus 5 g~t~~~~~~~~gv~~~~d~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (312)
|||++|++++||||||+|+|+|.|.++.++..+|
T Consensus 1 gtTivgi~~~dgVvlaaD~r~s~g~~v~~~~~~K---------------------------------------------- 34 (172)
T PRK05456 1 GTTILAVRRNGKVAIAGDGQVTLGNTVMKGNARK---------------------------------------------- 34 (172)
T ss_pred CcEEEEEEECCEEEEEECCceEeCcEEEcCCCce----------------------------------------------
Confidence 7999999999999999999999999999999888
Q ss_pred CCCCccccccCCccccccccccCCccccCCCCCCCCCCCCcceEEEe-cCeEEEEEeCChhHHHHHHHHHHHHhhhhhhh
Q psy14210 85 LSQSSQHIISGDSCELLHPVYTGGERCGPFSQSSTVPHNTSFQVIPV-SSSILCTLAGNAADCVYWLHSLAKECKGYECK 163 (312)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~dgVv~~~~~~~~~~~~~~~~KI~~I-~d~i~~a~sG~~aD~q~l~~~lr~~~~~~~~~ 163 (312)
|++| +++++|++||..+|+|.|.+.++.+++.|+..
T Consensus 35 -------------------------------------------I~~i~~d~i~~~~aG~~aD~q~l~~~l~~~~~~y~~~ 71 (172)
T PRK05456 35 -------------------------------------------VRRLYNGKVLAGFAGSTADAFTLFERFEAKLEEHQGN 71 (172)
T ss_pred -------------------------------------------EEEeCCCCEEEEEeccHHHHHHHHHHHHHHHHHccCc
Confidence 9999 99999999999999999999999999999832
Q ss_pred cCCccCHHHHHHHHHHHHHHhccCCCCCCCCCCcccceeeeEEecCCCCeEEEEcCCceEEec--CeeeEccChHHHHHH
Q psy14210 164 YRTGMTIRHAANLLVNMVRKYRTGNHSSKIPNGLSFGTLMAAYDEILGPQLYMLDNTGLLIEG--TKFCVGSGAEYAQAI 241 (312)
Q Consensus 164 ~g~~i~v~~la~~ls~~l~~~~~~~~~~~rP~gls~~~IIaG~D~~~gp~Ly~iDpsGs~~e~--~~~AiGsGs~~a~~~ 241 (312)
. ++.+++.+..+ ..+.. .+|+. +++|+ +|. |+||.+||.|++.+. ++.++|+|+.+++++
T Consensus 72 ~-----~~~~a~l~~~l-~~~~~-----~~~l~--~~~lv--~d~---~~ly~id~~G~~~~~~~~~~a~GSGs~~a~g~ 133 (172)
T PRK05456 72 L-----LRAAVELAKDW-RTDRY-----LRRLE--AMLIV--ADK---EHSLIISGNGDVIEPEDGIIAIGSGGNYALAA 133 (172)
T ss_pred c-----HHHHHHHHHHH-HhccC-----CCccE--EEEEE--EcC---CcEEEECCCCcEeccCCCeEEEecCHHHHHHH
Confidence 2 46666555433 22221 24543 56777 344 799999999999877 799999999999999
Q ss_pred HHhhCC-CCCCHHHHHHHHHHHHHHHHHhcCcCCCcEEEEE
Q psy14210 242 LDTDYR-PDLSEEEAYALATSAIYHACRRDIHSGGCVRLYK 281 (312)
Q Consensus 242 Le~~y~-~~ms~eEAi~la~kaL~~a~~rD~~sg~~ieI~i 281 (312)
||++|+ ++| ||++++++|++.+.+||..++++|+|-.
T Consensus 134 ld~~y~~~~m---eA~~la~kai~~A~~Rd~~sg~~i~v~~ 171 (172)
T PRK05456 134 ARALLENTDL---SAEEIAEKALKIAADICIYTNHNITIEE 171 (172)
T ss_pred HHHhhhcCCC---CHHHHHHHHHHHHHHhCeeCCCcEEEEE
Confidence 999999 999 9999999999999999999999998754
No 42
>KOG0184|consensus
Probab=100.00 E-value=2e-32 Score=240.29 Aligned_cols=206 Identities=19% Similarity=0.294 Sum_probs=185.3
Q ss_pred ccCceEEEEEcCCeEEEEEcCCccCCcccccccccccccccCCCcccccCccccCCcccCCCccccccccccccccccCC
Q psy14210 3 ITGTTTLGFRYPEGIILATDSRATANDLIVSQKLNKFCQSSLGDSCELLHPVYTGGERCGQSYSQRSHCVAETQQDHFLS 82 (312)
Q Consensus 3 ~~g~t~~~~~~~~gv~~~~d~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (312)
-+++|++|||.+|||||++++-.++ .|..+++-+|
T Consensus 32 en~~T~IGIk~kdGVVl~vEKli~S-kLy~p~sn~r-------------------------------------------- 66 (254)
T KOG0184|consen 32 ENSGTCIGIKCKDGVVLAVEKLITS-KLYEPGSNER-------------------------------------------- 66 (254)
T ss_pred hcCCcEEEEecCCeEEEEEeeeecc-cccccCCCCc--------------------------------------------
Confidence 4689999999999999999999888 6666665555
Q ss_pred CCCCCCccccccCCccccccccccCCccccCCCCCCCCCCCCcceEEEecCeEEEEEeCChhHHHHHHHHHHHHhhhhhh
Q psy14210 83 PPLSQSSQHIISGDSCELLHPVYTGGERCGPFSQSSTVPHNTSFQVIPVSSSILCTLAGNAADCVYWLHSLAKECKGYEC 162 (312)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~dgVv~~~~~~~~~~~~~~~~KI~~I~d~i~~a~sG~~aD~q~l~~~lr~~~~~~~~ 162 (312)
||.|++||+|+++|+.+|.+.+.+++|.++..|+-
T Consensus 67 ---------------------------------------------i~~V~r~iG~avaGl~~Dg~~l~~~ar~ea~~~~~ 101 (254)
T KOG0184|consen 67 ---------------------------------------------IFSVDRHIGMAVAGLIPDGRHLVNRARDEAASWRK 101 (254)
T ss_pred ---------------------------------------------eEeecccccEEEeccccchHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999
Q ss_pred hcCCccCHHHHHHHHHHHHHHhccCCCCCCCCCCcccceeeeEEecCCCCeEEEEcCCceEEecCeeeEccChHHHHHHH
Q psy14210 163 KYRTGMTIRHAANLLVNMVRKYRTGNHSSKIPNGLSFGTLMAAYDEILGPQLYMLDNTGLLIEGTKFCVGSGAEYAQAIL 242 (312)
Q Consensus 163 ~~g~~i~v~~la~~ls~~l~~~~~~~~~~~rP~gls~~~IIaG~D~~~gp~Ly~iDpsGs~~e~~~~AiGsGs~~a~~~L 242 (312)
+|+.|+|.+.++.+++++.|.+|. ++..||||+ +.++++||. +||+||++||+|..+.++.+|+|.|.+.|+..|
T Consensus 102 ~y~~piP~~~la~rva~yvh~~Tl--y~~vRpfG~--~~~~~~yd~-~g~~LymiepSG~~~~Y~~aaiGKgrq~aKtEl 176 (254)
T KOG0184|consen 102 NYGDPIPGKHLADRVADYVHAFTL--YSSVRPFGA--STILGSYDD-EGPQLYMIEPSGSSYGYKGAAIGKGRQAAKTEL 176 (254)
T ss_pred hcCCCCchHHHHHHHHhhhheeeh--hhccccccc--eEEEEEEeC-CCceEEEEcCCCCccceeeeeccchhHHHHHHH
Confidence 999999999999999999999999 999999995 679999996 899999999999999999999999999999999
Q ss_pred HhhCCCCCCHHHHHHHHHHHHHHHHHhcCcCCCcEEEEEEEC--CCeEEeChhHHHHHHHHHh
Q psy14210 243 DTDYRPDLSEEEAYALATSAIYHACRRDIHSGGCVRLYKING--QGWQQVLSRDVKDIYNDRK 303 (312)
Q Consensus 243 e~~y~~~ms~eEAi~la~kaL~~a~~rD~~sg~~ieI~iItk--~G~~~l~~~eI~~~l~~~~ 303 (312)
|+.--.+|+.+|+++.+.+.|+.+.+..-...-.+||.++.. +|.+..-|.||-+...+++
T Consensus 177 EKL~~~~mt~~e~VkeaakIiY~~HDe~KdK~feiEm~wvg~eTnG~h~~vp~el~~ea~~~a 239 (254)
T KOG0184|consen 177 EKLKIDEMTCKELVKEAAKIIYKVHDENKDKEFEIEMGWVGEETNGLHEKVPSELLEEAEKYA 239 (254)
T ss_pred HhcccccccHHHHHHHHHheeEeecccccCcceEEEEEEEEeecCCccccCcHHHHHHHHHHH
Confidence 999888999999999999999998765444445688888875 6887777778888777664
No 43
>cd01913 protease_HslV Protease HslV and the ATPase/chaperone HslU are part of an ATP-dependent proteolytic system that is the prokaryotic homolog of the proteasome. HslV is a dimer of hexamers (a dodecamer) that forms a central proteolytic chamber with active sites on the interior walls of the cavity. HslV shares significant sequence and structural similarity with the proteasomal beta-subunit and both are members of the Ntn-family of hydrolases. HslV has a nucleophilic threonine residue at its N-terminus that is exposed after processing of the propeptide and is directly involved in active site catalysis.
Probab=100.00 E-value=7.7e-32 Score=234.06 Aligned_cols=166 Identities=22% Similarity=0.261 Sum_probs=143.9
Q ss_pred ceEEEEEcCCeEEEEEcCCccCCcccccccccccccccCCCcccccCccccCCcccCCCccccccccccccccccCCCCC
Q psy14210 6 TTTLGFRYPEGIILATDSRATANDLIVSQKLNKFCQSSLGDSCELLHPVYTGGERCGQSYSQRSHCVAETQQDHFLSPPL 85 (312)
Q Consensus 6 ~t~~~~~~~~gv~~~~d~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (312)
||++|++++||||||+|+|+|.|.++.++..+|
T Consensus 1 tTivgi~~~dgVvlaaD~r~t~G~~v~~~~~~K----------------------------------------------- 33 (171)
T cd01913 1 TTILAVRKNGKVVIAGDGQVTLGNTVMKGNARK----------------------------------------------- 33 (171)
T ss_pred CeEEEEEECCEEEEEECCceEeccEEEcCCcce-----------------------------------------------
Confidence 799999999999999999999999999999999
Q ss_pred CCCccccccCCccccccccccCCccccCCCCCCCCCCCCcceEEEecC-eEEEEEeCChhHHHHHHHHHHHHhhhhhhhc
Q psy14210 86 SQSSQHIISGDSCELLHPVYTGGERCGPFSQSSTVPHNTSFQVIPVSS-SILCTLAGNAADCVYWLHSLAKECKGYECKY 164 (312)
Q Consensus 86 ~~~~~~~~~~~~~~~~~~~~~dgVv~~~~~~~~~~~~~~~~KI~~I~d-~i~~a~sG~~aD~q~l~~~lr~~~~~~~~~~ 164 (312)
|++|++ |++|++||..+|+|.|.++++.+++.|+++.
T Consensus 34 ------------------------------------------i~~i~d~~i~~~~aG~~aD~~~l~~~~~~~~~~y~~~~ 71 (171)
T cd01913 34 ------------------------------------------VRRLYNGKVIAGFAGSTADAFTLFERFEAKLEQYPGNL 71 (171)
T ss_pred ------------------------------------------EEEeCCCCEEEEecccHHHHHHHHHHHHHHHHHhhchH
Confidence 999999 9999999999999999999999999999887
Q ss_pred CCccCHHHHHHHHHHHHHHhccCCCCCCCCCCcccceeeeEEecCCCCeEEEEcCCceEEecC--eeeEccChHHHHHHH
Q psy14210 165 RTGMTIRHAANLLVNMVRKYRTGNHSSKIPNGLSFGTLMAAYDEILGPQLYMLDNTGLLIEGT--KFCVGSGAEYAQAIL 242 (312)
Q Consensus 165 g~~i~v~~la~~ls~~l~~~~~~~~~~~rP~gls~~~IIaG~D~~~gp~Ly~iDpsGs~~e~~--~~AiGsGs~~a~~~L 242 (312)
++ .+++.+..+ ..++. +|+ +++.+|+++| ++||.+||.|++.+++ +.++|||+.+++++|
T Consensus 72 ~~-----~aa~l~~~l-~~~~~------~~~-l~a~~iv~~~-----~~ly~id~~G~~ie~~~~~~a~GSGS~ya~g~l 133 (171)
T cd01913 72 LR-----AAVELAKDW-RTDRY------LRR-LEAMLIVADK-----EHTLLISGNGDVIEPDDGIAAIGSGGNYALAAA 133 (171)
T ss_pred HH-----HHHHHHHHH-HhccC------cCc-eEEEEEEeCC-----CcEEEECCCCCEeccCCCeEEEeCCHHHHHHHH
Confidence 63 445544433 22222 555 4565666544 3899999999999995 999999999999999
Q ss_pred HhhCCCC-CCHHHHHHHHHHHHHHHHHhcCcCCCcEEEEE
Q psy14210 243 DTDYRPD-LSEEEAYALATSAIYHACRRDIHSGGCVRLYK 281 (312)
Q Consensus 243 e~~y~~~-ms~eEAi~la~kaL~~a~~rD~~sg~~ieI~i 281 (312)
|.+|+++ || +.+++++|++.|++||..++++|.+-.
T Consensus 134 d~~yk~~~ms---~~~la~~Av~~A~~rd~~tg~~i~~~~ 170 (171)
T cd01913 134 RALLDHTDLS---AEEIARKALKIAADICIYTNHNITVEE 170 (171)
T ss_pred HHhhccCCCC---HHHHHHHHHHHHHhhCcccCCCEEEEe
Confidence 9999995 99 559999999999999999999998754
No 44
>TIGR03692 ATP_dep_HslV ATP-dependent protease HslVU, peptidase subunit. The ATP-dependent protease HslVU, a complex of hexameric HslU active as a protein-unfolding ATPase and dodecameric HslV, the catalytic threonine protease.
Probab=100.00 E-value=1.5e-31 Score=232.19 Aligned_cols=166 Identities=24% Similarity=0.300 Sum_probs=143.2
Q ss_pred ceEEEEEcCCeEEEEEcCCccCCcccccccccccccccCCCcccccCccccCCcccCCCccccccccccccccccCCCCC
Q psy14210 6 TTTLGFRYPEGIILATDSRATANDLIVSQKLNKFCQSSLGDSCELLHPVYTGGERCGQSYSQRSHCVAETQQDHFLSPPL 85 (312)
Q Consensus 6 ~t~~~~~~~~gv~~~~d~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (312)
||++|++|+||||||+|+|+|.|.++.++..+|
T Consensus 1 tTivgi~~~dgVvlaaD~r~s~g~~v~~~~~~K----------------------------------------------- 33 (171)
T TIGR03692 1 TTILAVRRNGKVVIAGDGQVTLGNTVMKGNARK----------------------------------------------- 33 (171)
T ss_pred CeEEEEEECCEEEEEECCceEeceEEEcCCCCe-----------------------------------------------
Confidence 799999999999999999999999999999999
Q ss_pred CCCccccccCCccccccccccCCccccCCCCCCCCCCCCcceEEEe-cCeEEEEEeCChhHHHHHHHHHHHHhhhhhhhc
Q psy14210 86 SQSSQHIISGDSCELLHPVYTGGERCGPFSQSSTVPHNTSFQVIPV-SSSILCTLAGNAADCVYWLHSLAKECKGYECKY 164 (312)
Q Consensus 86 ~~~~~~~~~~~~~~~~~~~~~dgVv~~~~~~~~~~~~~~~~KI~~I-~d~i~~a~sG~~aD~q~l~~~lr~~~~~~~~~~ 164 (312)
|++| ++|++|++||..+|+|.|.++++.+++.|+++.
T Consensus 34 ------------------------------------------i~~i~~d~i~~~~aG~~aD~q~l~~~~~~~~~~y~~~~ 71 (171)
T TIGR03692 34 ------------------------------------------VRRLYNGKVLAGFAGSTADAFTLFERFEAKLEEYQGNL 71 (171)
T ss_pred ------------------------------------------EEEeCCCCEEEEecchHHHHHHHHHHHHHHHHHccCch
Confidence 9999 599999999999999999999999999998743
Q ss_pred CCccCHHHHHHHHHHHHHHhccCCCCCCCCCCcccceeeeEEecCCCCeEEEEcCCceEEec--CeeeEccChHHHHHHH
Q psy14210 165 RTGMTIRHAANLLVNMVRKYRTGNHSSKIPNGLSFGTLMAAYDEILGPQLYMLDNTGLLIEG--TKFCVGSGAEYAQAIL 242 (312)
Q Consensus 165 g~~i~v~~la~~ls~~l~~~~~~~~~~~rP~gls~~~IIaG~D~~~gp~Ly~iDpsGs~~e~--~~~AiGsGs~~a~~~L 242 (312)
.+.+++.++++ ..++. +|+ +++.+|+++| ++||.+||.|++.++ ++.++|||+.+++++|
T Consensus 72 -----~~~~a~l~~~~-~~~~~------~~~-l~a~~iv~~~-----~~ly~i~~~G~~ie~~~~~~a~GSGS~~a~g~l 133 (171)
T TIGR03692 72 -----TRAAVELAKDW-RTDRY------LRR-LEAMLIVADK-----ETSLLISGTGDVIEPEDGIAAIGSGGNYALAAA 133 (171)
T ss_pred -----HHHHHHHHHHH-hhccc------ccc-cEEEEEEEcC-----CCEEEEcCCCcEeccCCCeEEEeCCHHHHHHHH
Confidence 36666666653 22221 333 5565666543 489999999999997 5999999999999999
Q ss_pred HhhC-CCCCCHHHHHHHHHHHHHHHHHhcCcCCCcEEEEE
Q psy14210 243 DTDY-RPDLSEEEAYALATSAIYHACRRDIHSGGCVRLYK 281 (312)
Q Consensus 243 e~~y-~~~ms~eEAi~la~kaL~~a~~rD~~sg~~ieI~i 281 (312)
|.+| +++|+ |++++.++++.|++||..++++|+|-.
T Consensus 134 d~~y~~~~~s---a~~la~~Av~~A~~rd~~sg~~i~v~~ 170 (171)
T TIGR03692 134 RALLRNTDLS---AEEIAREALKIAADICIYTNHNITIEE 170 (171)
T ss_pred HHhhhcCCCC---HHHHHHHHHHHHHhhCccCCCCEEEEe
Confidence 9999 47777 999999999999999999999998754
No 45
>KOG0182|consensus
Probab=99.98 E-value=6.8e-31 Score=229.31 Aligned_cols=208 Identities=19% Similarity=0.291 Sum_probs=193.3
Q ss_pred cCceEEEEEcCCeEEEEEcCCccCCcccccccccccccccCCCcccccCccccCCcccCCCccccccccccccccccCCC
Q psy14210 4 TGTTTLGFRYPEGIILATDSRATANDLIVSQKLNKFCQSSLGDSCELLHPVYTGGERCGQSYSQRSHCVAETQQDHFLSP 83 (312)
Q Consensus 4 ~g~t~~~~~~~~gv~~~~d~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (312)
+|-|.||+|.+|.+++++.++..- +++.+..+..
T Consensus 35 ~gltsVavrgkDcavvvsqKkvpD-KLld~~tvt~--------------------------------------------- 68 (246)
T KOG0182|consen 35 AGLTSVAVRGKDCAVVVTQKKVPD-KLLDSSTVTH--------------------------------------------- 68 (246)
T ss_pred CCCceEEEcCCceEEEEecccCcc-ccccccccee---------------------------------------------
Confidence 588999999999999999888776 7777777766
Q ss_pred CCCCCccccccCCccccccccccCCccccCCCCCCCCCCCCcceEEEecCeEEEEEeCChhHHHHHHHHHHHHhhhhhhh
Q psy14210 84 PLSQSSQHIISGDSCELLHPVYTGGERCGPFSQSSTVPHNTSFQVIPVSSSILCTLAGNAADCVYWLHSLAKECKGYECK 163 (312)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~dgVv~~~~~~~~~~~~~~~~KI~~I~d~i~~a~sG~~aD~q~l~~~lr~~~~~~~~~ 163 (312)
+|+|+.+|+|+++|..+|++..+.++|.++.++++.
T Consensus 69 --------------------------------------------~f~itk~ig~v~tG~~aDar~~v~rar~eAa~~~yk 104 (246)
T KOG0182|consen 69 --------------------------------------------LFRITKKIGCVITGMIADARSQVQRARYEAAEFRYK 104 (246)
T ss_pred --------------------------------------------EEEeeccceEEEecCCcchHHHHHHHHHHHHhhhhh
Confidence 899999999999999999999999999999999999
Q ss_pred cCCccCHHHHHHHHHHHHHHhccCCCCCCCCCCcccceeeeEEecCCCCeEEEEcCCceEEecCeeeEccChHHHHHHHH
Q psy14210 164 YRTGMTIRHAANLLVNMVRKYRTGNHSSKIPNGLSFGTLMAAYDEILGPQLYMLDNTGLLIEGTKFCVGSGAEYAQAILD 243 (312)
Q Consensus 164 ~g~~i~v~~la~~ls~~l~~~~~~~~~~~rP~gls~~~IIaG~D~~~gp~Ly~iDpsGs~~e~~~~AiGsGs~~a~~~Le 243 (312)
||.+||++.||++++++.|.++| .+.+||.|+ .+++.|+|++.||.+|.+||.|-+..+++++.|.....+..+||
T Consensus 105 ~Gyemp~DiL~k~~Ad~~QvytQ--~a~mRplg~--~~~~i~~D~E~gP~vYk~DpAGyy~g~kAtaaG~Kq~e~tsfLE 180 (246)
T KOG0182|consen 105 YGYEMPCDILAKRMADKSQVYTQ--NAAMRPLGV--AATLIGVDEERGPSVYKTDPAGYYYGFKATAAGVKQQEATSFLE 180 (246)
T ss_pred cCCCCCHHHHHHHHhhHHHHHhh--hhhhcccce--eEEEEEeccccCcceEeecCccccccceeeecccchhhHHHHHH
Confidence 99999999999999999999999 889999885 57899999988999999999999999999999999999999999
Q ss_pred hhCCCC--CCHHHHHHHHHHHHHHHHHhcCcCCCcEEEEEEECCC--eEEeChhHHHHHHHHHhcCC
Q psy14210 244 TDYRPD--LSEEEAYALATSAIYHACRRDIHSGGCVRLYKINGQG--WQQVLSRDVKDIYNDRKEAP 306 (312)
Q Consensus 244 ~~y~~~--ms~eEAi~la~kaL~~a~~rD~~sg~~ieI~iItk~G--~~~l~~~eI~~~l~~~~~~~ 306 (312)
++|+++ +|.+|++++++.||..++..|. ....+||++++++- +++|+.+||++.|..++|++
T Consensus 181 Kk~Kk~~~~t~~e~ve~ai~al~~sl~~Df-k~se~EVgvv~~~~p~f~~Ls~~eie~hL~~IAEkd 246 (246)
T KOG0182|consen 181 KKYKKDIDLTFEETVETAISALQSSLGIDF-KSSELEVGVVTVDNPEFRILSAEEIEEHLQAIAEKD 246 (246)
T ss_pred HhhccCccchHHHHHHHHHHHHHHHHhccc-CCcceEEEEEEcCCcceeeccHHHHHHHHHHhhhcC
Confidence 999987 7899999999999999998885 45799999999864 99999999999999999874
No 46
>KOG0180|consensus
Probab=99.97 E-value=1.1e-29 Score=215.53 Aligned_cols=190 Identities=18% Similarity=0.232 Sum_probs=178.7
Q ss_pred cccCceEEEEEcCCeEEEEEcCCccCCcccccccccccccccCCCcccccCccccCCcccCCCccccccccccccccccC
Q psy14210 2 FITGTTTLGFRYPEGIILATDSRATANDLIVSQKLNKFCQSSLGDSCELLHPVYTGGERCGQSYSQRSHCVAETQQDHFL 81 (312)
Q Consensus 2 ~~~g~t~~~~~~~~gv~~~~d~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (312)
-.+|+++|||+.+++|.||+|.|...-..-.+..++|
T Consensus 5 synGg~vvAM~gk~cvaIa~D~RlG~q~~tistdf~k------------------------------------------- 41 (204)
T KOG0180|consen 5 SYNGGSVVAMAGKNCVAIASDLRLGVQSQTISTDFQK------------------------------------------- 41 (204)
T ss_pred eecCceEEEEeCCceEEEEeccccceeeeeeeccchh-------------------------------------------
Confidence 3589999999999999999999998866667777777
Q ss_pred CCCCCCCccccccCCccccccccccCCccccCCCCCCCCCCCCcceEEEecCeEEEEEeCChhHHHHHHHHHHHHhhhhh
Q psy14210 82 SPPLSQSSQHIISGDSCELLHPVYTGGERCGPFSQSSTVPHNTSFQVIPVSSSILCTLAGNAADCVYWLHSLAKECKGYE 161 (312)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~dgVv~~~~~~~~~~~~~~~~KI~~I~d~i~~a~sG~~aD~q~l~~~lr~~~~~~~ 161 (312)
||+|.|+++++.+|+..|+|.+.++++...+.|+
T Consensus 42 ----------------------------------------------i~~igdr~y~GL~glatDvqtl~~~~~fr~nLy~ 75 (204)
T KOG0180|consen 42 ----------------------------------------------IFKIGDRLYLGLTGLATDVQTLLERLRFRKNLYE 75 (204)
T ss_pred ----------------------------------------------heecCCeeEEeccccchhHHHHHHHHHHHHhHHH
Confidence 9999999999999999999999999999999999
Q ss_pred hhcCCccCHHHHHHHHHHHHHHhccCCCCCCCCCCcccceeeeEEecCCCCeEEEEcCCceEEec-CeeeEccChHHHHH
Q psy14210 162 CKYRTGMTIRHAANLLVNMVRKYRTGNHSSKIPNGLSFGTLMAAYDEILGPQLYMLDNTGLLIEG-TKFCVGSGAEYAQA 240 (312)
Q Consensus 162 ~~~g~~i~v~~la~~ls~~l~~~~~~~~~~~rP~gls~~~IIaG~D~~~gp~Ly~iDpsGs~~e~-~~~AiGsGs~~a~~ 240 (312)
++.+++|.|+.+++.++.++|++|. -||. ...++||+|++++|+|...|..|..... +|.+.|.++...++
T Consensus 76 lre~R~i~P~~~s~mvS~~lYekRf------gpYf--~~PvVAGl~~~~kPfIc~mD~IGc~~~~~DFVvsGTa~e~L~G 147 (204)
T KOG0180|consen 76 LREEREIKPETFSSMVSSLLYEKRF------GPYF--TEPVVAGLDDDNKPFICGMDLIGCIDAPKDFVVSGTASEQLYG 147 (204)
T ss_pred hhhhcccCcHHHHHHHHHHHHHhhc------CCcc--cceeEeccCCCCCeeEeecccccCcCccCCeEEecchHHHHHH
Confidence 9999999999999999999999998 6875 5799999999889999999999999866 58999999999999
Q ss_pred HHHhhCCCCCCHHHHHHHHHHHHHHHHHhcCcCCCcEEEEEEECCCeE
Q psy14210 241 ILDTDYRPDLSEEEAYALATSAIYHACRRDIHSGGCVRLYKINGQGWQ 288 (312)
Q Consensus 241 ~Le~~y~~~ms~eEAi~la~kaL~~a~~rD~~sg~~ieI~iItk~G~~ 288 (312)
++|..|+|||..||..+.+.++|..+.+||+.+|+...+++|+||.++
T Consensus 148 mCE~ly~pnmepd~LFetisQa~Lna~DRDalSGwGa~vyiI~kdkv~ 195 (204)
T KOG0180|consen 148 MCEALYEPNMEPDELFETISQALLNAVDRDALSGWGAVVYIITKDKVT 195 (204)
T ss_pred HHHHhcCCCCCHHHHHHHHHHHHHhHhhhhhhccCCeEEEEEccchhh
Confidence 999999999999999999999999999999999999999999998764
No 47
>cd01901 Ntn_hydrolase The Ntn hydrolases (N-terminal nucleophile) are a diverse superfamily of of enzymes that are activated autocatalytically via an N-terminally lcated nucleophilic amino acid. N-terminal nucleophile (NTN-) hydrolase superfamily, which contains a four-layered alpha, beta, beta, alpha core structure. This family of hydrolases includes penicillin acylase, the 20S proteasome alpha and beta subunits, and glutamate synthase. The mechanism of activation of these proteins is conserved, although they differ in their substrate specificities. All known members catalyze the hydrolysis of amide bonds in either proteins or small molecules, and each one of them is synthesized as a preprotein. For each, an autocatalytic endoproteolytic process generates a new N-terminal residue. This mature N-terminal residue is central to catalysis and acts as both a polarizing base and a nucleophile during the reaction. The N-terminal amino group acts as the proton acceptor and activates either t
Probab=99.95 E-value=6.4e-27 Score=197.32 Aligned_cols=162 Identities=28% Similarity=0.422 Sum_probs=153.6
Q ss_pred ceEEEEEcCCeEEEEEcCCccCCcccccccccccccccCCCcccccCccccCCcccCCCccccccccccccccccCCCCC
Q psy14210 6 TTTLGFRYPEGIILATDSRATANDLIVSQKLNKFCQSSLGDSCELLHPVYTGGERCGQSYSQRSHCVAETQQDHFLSPPL 85 (312)
Q Consensus 6 ~t~~~~~~~~gv~~~~d~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (312)
||++|++++||||||+|++.+.|........+|
T Consensus 1 ~t~i~i~~~~gvila~d~~~~~~~~~~~~~~~k----------------------------------------------- 33 (164)
T cd01901 1 STSVAIKGKGGVVLAADKRLSSGLPVAGSPVIK----------------------------------------------- 33 (164)
T ss_pred CcEEEEEeCCEEEEEEecccCccCeecCCCcce-----------------------------------------------
Confidence 689999999999999999999988876667777
Q ss_pred CCCccccccCCccccccccccCCccccCCCCCCCCCCCCcceEEEecCeEEEEEeCChhHHHHHHHHHHHHhhhhhhhcC
Q psy14210 86 SQSSQHIISGDSCELLHPVYTGGERCGPFSQSSTVPHNTSFQVIPVSSSILCTLAGNAADCVYWLHSLAKECKGYECKYR 165 (312)
Q Consensus 86 ~~~~~~~~~~~~~~~~~~~~~dgVv~~~~~~~~~~~~~~~~KI~~I~d~i~~a~sG~~aD~q~l~~~lr~~~~~~~~~~g 165 (312)
|++++++++++++|..+|++.+.++++.+++.|++.++
T Consensus 34 ------------------------------------------i~~~~~~~~~~~sG~~~d~~~~~~~~~~~~~~~~~~~~ 71 (164)
T cd01901 34 ------------------------------------------IGKNEDGIAWGLAGLAADAQTLVRRLREALQLYRLRYG 71 (164)
T ss_pred ------------------------------------------EEEecCCeEEEEecChHHHHHHHHHHHHHHHHHHHHHC
Confidence 89999999999999999999999999999999999999
Q ss_pred CccCHHHHHHHHHHHHHHhccCCCCCCCCCCcccceeeeEEecCCCCeEEEEcCCceEEec-CeeeEccChHHHHHHHHh
Q psy14210 166 TGMTIRHAANLLVNMVRKYRTGNHSSKIPNGLSFGTLMAAYDEILGPQLYMLDNTGLLIEG-TKFCVGSGAEYAQAILDT 244 (312)
Q Consensus 166 ~~i~v~~la~~ls~~l~~~~~~~~~~~rP~gls~~~IIaG~D~~~gp~Ly~iDpsGs~~e~-~~~AiGsGs~~a~~~Le~ 244 (312)
.++++..+++.+++.++.+++ .||+++ ++|++|+|+ ++|+||.+||+|++.++ .++++|+++.+++++|++
T Consensus 72 ~~~~~~~~~~~~~~~~~~~~~-----~~p~~~--~~iiag~~~-~~~~l~~id~~g~~~~~~~~~~~G~~~~~~~~~l~~ 143 (164)
T cd01901 72 EPISVVALAKELAKLLQVYTQ-----GRPFGV--NLIVAGVDE-GGGNLYYIDPSGPVIENPGAVATGSRSQRAKSLLEK 143 (164)
T ss_pred CCCCHHHHHHHHHHHHHHhcC-----CCCcce--EEEEEEEcC-CCCEEEEECCCcCEeecCcEEEECCCCHHHHHHHHH
Confidence 999999999999999999987 699884 689999998 88999999999999999 999999999999999999
Q ss_pred hCCCCCCHHHHHHHHHHHHH
Q psy14210 245 DYRPDLSEEEAYALATSAIY 264 (312)
Q Consensus 245 ~y~~~ms~eEAi~la~kaL~ 264 (312)
.|+++|+.+|+++++.+||+
T Consensus 144 ~~~~~~~~~~~~~~~~~~l~ 163 (164)
T cd01901 144 LYKPDMTLEEAVELALKALK 163 (164)
T ss_pred HhcCCCCHHHHHHHHHHHHh
Confidence 99999999999999999985
No 48
>COG5405 HslV ATP-dependent protease HslVU (ClpYQ), peptidase subunit [Posttranslational modification, protein turnover, chaperones]
Probab=99.56 E-value=6.8e-14 Score=118.44 Aligned_cols=172 Identities=20% Similarity=0.253 Sum_probs=136.6
Q ss_pred ccCceEEEEEcCCeEEEEEcCCccCCcccccccccccccccCCCcccccCccccCCcccCCCccccccccccccccccCC
Q psy14210 3 ITGTTTLGFRYPEGIILATDSRATANDLIVSQKLNKFCQSSLGDSCELLHPVYTGGERCGQSYSQRSHCVAETQQDHFLS 82 (312)
Q Consensus 3 ~~g~t~~~~~~~~gv~~~~d~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (312)
.++||++++|-.+-|+||+|...|.|+.+...+++|+
T Consensus 2 ~h~TTiv~vr~~gkv~iagDGQVtlG~tvmK~narKv------------------------------------------- 38 (178)
T COG5405 2 FHMTTIVAVRKNGKVVIAGDGQVTLGNTVMKGNARKV------------------------------------------- 38 (178)
T ss_pred ceeEEEEEEeeCCeEEEecCceEeecceeeeccHHHH-------------------------------------------
Confidence 4789999999999999999999999999999988883
Q ss_pred CCCCCCccccccCCccccccccccCCccccCCCCCCCCCCCCcceEEEecCeEEEEEeCChhHHHHHHHHHHHHhhhhhh
Q psy14210 83 PPLSQSSQHIISGDSCELLHPVYTGGERCGPFSQSSTVPHNTSFQVIPVSSSILCTLAGNAADCVYWLHSLAKECKGYEC 162 (312)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~dgVv~~~~~~~~~~~~~~~~KI~~I~d~i~~a~sG~~aD~q~l~~~lr~~~~~~~~ 162 (312)
.||| +..++.+++|..+|+..|.+.+..+++.|.-
T Consensus 39 -------------------------------------------Rkl~--~gkvlaGFAGstADaftLfe~fe~kle~~~g 73 (178)
T COG5405 39 -------------------------------------------RRLY--NGKVLAGFAGSTADAFTLFERFEAKLEQYQG 73 (178)
T ss_pred -------------------------------------------HHHc--CCcEEEEecccchhHHHHHHHHHHHHHHccC
Confidence 2356 7789999999999999999999999988862
Q ss_pred hcCCccCHHHHHHHHHHHHHHhccCCCCCCCCCCcccceeeeEEecCCCCeEEEEcCCceEEec--CeeeEccChHHHHH
Q psy14210 163 KYRTGMTIRHAANLLVNMVRKYRTGNHSSKIPNGLSFGTLMAAYDEILGPQLYMLDNTGLLIEG--TKFCVGSGAEYAQA 240 (312)
Q Consensus 163 ~~g~~i~v~~la~~ls~~l~~~~~~~~~~~rP~gls~~~IIaG~D~~~gp~Ly~iDpsGs~~e~--~~~AiGsGs~~a~~ 240 (312)
. +...+..++.-++.-+. .|- +.+.++++ | .-.+|-+...|..++. ..++||||..|+++
T Consensus 74 ~------L~raavelaKdwr~Dk~-----lr~--LEAmllVa--d---~~~il~isG~gdV~epe~~~~aIGSGgnyAl~ 135 (178)
T COG5405 74 D------LFRAAVELAKDWRTDKY-----LRK--LEAMLLVA--D---KTHILIITGNGDVIEPEDDIIAIGSGGNYALS 135 (178)
T ss_pred c------HHHHHHHHHHhhhhhhH-----HHH--HhhheeEe--C---CCcEEEEecCcceecCCCCeEEEcCCchHHHH
Confidence 2 22244444444432221 111 33556666 4 3679999999999977 37999999999999
Q ss_pred HHHhhCCC-CCCHHHHHHHHHHHHHHHHHhcCcCCCcEEEEEEE
Q psy14210 241 ILDTDYRP-DLSEEEAYALATSAIYHACRRDIHSGGCVRLYKIN 283 (312)
Q Consensus 241 ~Le~~y~~-~ms~eEAi~la~kaL~~a~~rD~~sg~~ieI~iIt 283 (312)
..+..++. ++| |.+++.++|..+.+-+.++..+|.|..++
T Consensus 136 AarAl~~~~~ls---A~eIa~~sl~iA~eiciyTN~ni~ve~l~ 176 (178)
T COG5405 136 AARALMENTELS---AREIAEKSLKIAGDICIYTNHNIVVEELR 176 (178)
T ss_pred HHHHHHhccCCC---HHHHHHHHHhhhheEEEecCCcEEEEEee
Confidence 99988874 777 77899999999999888999999887765
No 49
>COG3484 Predicted proteasome-type protease [Posttranslational modification, protein turnover, chaperones]
Probab=99.34 E-value=1.6e-11 Score=107.58 Aligned_cols=153 Identities=20% Similarity=0.225 Sum_probs=119.8
Q ss_pred eEEEEEeCChhHHHHHHHHHHHHhhhhhh-hcCCccCHHHHHHHHHHHHHHhccCCCCC--CCCCCcccceeeeEEecCC
Q psy14210 134 SILCTLAGNAADCVYWLHSLAKECKGYEC-KYRTGMTIRHAANLLVNMVRKYRTGNHSS--KIPNGLSFGTLMAAYDEIL 210 (312)
Q Consensus 134 ~i~~a~sG~~aD~q~l~~~lr~~~~~~~~-~~g~~i~v~~la~~ls~~l~~~~~~~~~~--~rP~gls~~~IIaG~D~~~ 210 (312)
-++++.+|..|-.|.+...+.+..+..+. ..-+-.++-..+.++....++-...+... ..--.+++++|+||.-.-.
T Consensus 44 vlvl~taGNLA~tQaV~~ll~e~~~~d~~~~L~n~~sm~eattlvgetvrEv~~rds~~leka~~dfn~sfllGGQI~G~ 123 (255)
T COG3484 44 VLVLCTAGNLAITQAVLHLLDERIQRDDGDSLLNIPSMYEATTLVGETVREVQARDSPALEKAGIDFNCSFLLGGQIKGE 123 (255)
T ss_pred EEEEEecCccHHHHHHHHHHHHHhhccchhhhhcchhHHHHHHHHHHHHHHHHhccCchhhccCcceeEEEEEcceecCC
Confidence 36789999999999999999887763322 11234566777777777666544321110 1112245789999998734
Q ss_pred CCeEEEEcCCceEEec----CeeeEccChHHHHHHHHhhCCCCCCHHHHHHHHHHHHHHHHHhcCcCCCcEEEEEEECCC
Q psy14210 211 GPQLYMLDNTGLLIEG----TKFCVGSGAEYAQAILDTDYRPDLSEEEAYALATSAIYHACRRDIHSGGCVRLYKINGQG 286 (312)
Q Consensus 211 gp~Ly~iDpsGs~~e~----~~~AiGsGs~~a~~~Le~~y~~~ms~eEAi~la~kaL~~a~~rD~~sg~~ieI~iItk~G 286 (312)
.|.||.+.|.|++++. +|..+|. +.+.+++|++.+..++++|||.++++-+|...++.+...|-++++.++.+|.
T Consensus 124 pp~Ly~IYpqGNFIqaT~etpf~QiGE-tKYGKPildR~i~~~~pLeea~kcaLvS~DSTlkSNiSVGlPldLl~~e~ds 202 (255)
T COG3484 124 PPRLYLIYPQGNFIQATPETPFLQIGE-TKYGKPILDRTITYDTPLEEAAKCALVSFDSTLKSNISVGLPLDLLVYEADS 202 (255)
T ss_pred CceeEEEccCCCeeecCCCCceeEccc-cccCchhhhhhhhccCCHHHHhhheEEecchhhhccccccCCceeEEEeccc
Confidence 5899999999999976 6899998 6789999999999999999999999999999999999999999999999986
Q ss_pred e
Q psy14210 287 W 287 (312)
Q Consensus 287 ~ 287 (312)
+
T Consensus 203 ~ 203 (255)
T COG3484 203 F 203 (255)
T ss_pred e
Confidence 4
No 50
>PTZ00246 proteasome subunit alpha; Provisional
Probab=90.22 E-value=0.085 Score=48.69 Aligned_cols=35 Identities=11% Similarity=-0.008 Sum_probs=31.2
Q ss_pred ccccccccccccccCCCCCCCCccccccCCccccccccccCCccccCCCCCCCC
Q psy14210 67 QRSHCVAETQQDHFLSPPLSQSSQHIISGDSCELLHPVYTGGERCGPFSQSSTV 120 (312)
Q Consensus 67 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dgVv~~~~~~~~~~ 120 (312)
|.+||+.+..++. +++|++++||||+++|++.+..
T Consensus 20 QvEYA~~av~~g~-------------------t~Igik~~dgVvlaad~r~s~~ 54 (253)
T PTZ00246 20 QVEYALEAINNAS-------------------LTVGILCKEGVILGADKPISSK 54 (253)
T ss_pred HHHHHHHHHHhCC-------------------CEEEEEECCEEEEEEecCCCCc
Confidence 9999999998877 7899999999999999876553
No 51
>cd03752 proteasome_alpha_type_4 proteasome_alpha_type_4. The 20S proteasome, multisubunit proteolytic complex, is the central enzyme of nonlysosomal protein degradation in both the cytosol and nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis. Mammals have 7 alpha and 7 beta proteasome subunits while archaea have one of each.
Probab=90.21 E-value=0.093 Score=47.07 Aligned_cols=80 Identities=9% Similarity=-0.062 Sum_probs=51.1
Q ss_pred ccccccccccccccCCCCCCCCccccccCCccccccccccCCccccCCCCCCCCCCCCcceEEEecCeEEEEEeCChhHH
Q psy14210 67 QRSHCVAETQQDHFLSPPLSQSSQHIISGDSCELLHPVYTGGERCGPFSQSSTVPHNTSFQVIPVSSSILCTLAGNAADC 146 (312)
Q Consensus 67 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dgVv~~~~~~~~~~~~~~~~KI~~I~d~i~~a~sG~~aD~ 146 (312)
|.+||..+.+++. +++|++++|||++++|++........++..-+|.. - .
T Consensus 18 Qveya~~a~~~G~-------------------t~igi~~~dgVvla~d~r~~~~~~~~~~~~~KI~~----I-~------ 67 (213)
T cd03752 18 QVEYAMEAISHAG-------------------TCLGILAKDGIVLAAEKKVTSKLLDQSFSSEKIYK----I-D------ 67 (213)
T ss_pred HHHhHHHHHhcCC-------------------CEEEEEeCCEEEEEEEeccCCcccCCCcCcceEEE----e-c------
Confidence 9999999998887 89999999999999998765542222222222211 0 0
Q ss_pred HHHHHHHHHHhhhhhhhcCCccCHHHHHHHHHHHHHHhcc
Q psy14210 147 VYWLHSLAKECKGYECKYRTGMTIRHAANLLVNMVRKYRT 186 (312)
Q Consensus 147 q~l~~~lr~~~~~~~~~~g~~i~v~~la~~ls~~l~~~~~ 186 (312)
-..+--.-|.......+.++++...+.++.
T Consensus 68 ----------~~i~~~~sG~~~D~~~l~~~~r~~~~~~~~ 97 (213)
T cd03752 68 ----------DHIACAVAGITSDANILINYARLIAQRYLY 97 (213)
T ss_pred ----------CCEEEEEecChHhHHHHHHHHHHHHHHHHH
Confidence 001111235556677777888777776664
No 52
>cd03750 proteasome_alpha_type_2 proteasome_alpha_type_2. The 20S proteasome, multisubunit proteolytic complex, is the central enzyme of nonlysosomal protein degradation in both the cytosol and nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis. Mammals have 7 alpha and 7 beta proteasome subunits while archaea have one of each.
Probab=88.45 E-value=0.14 Score=46.36 Aligned_cols=34 Identities=9% Similarity=-0.042 Sum_probs=30.4
Q ss_pred ccccccccccccccCCCCCCCCccccccCCccccccccccCCccccCCCCCCC
Q psy14210 67 QRSHCVAETQQDHFLSPPLSQSSQHIISGDSCELLHPVYTGGERCGPFSQSST 119 (312)
Q Consensus 67 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dgVv~~~~~~~~~ 119 (312)
|++||+.+..++. +++|++++||||+++|++.+.
T Consensus 16 QveyA~~av~~G~-------------------t~igik~~dgVvlaad~~~~~ 49 (227)
T cd03750 16 QIEYALAAVSSGA-------------------PSVGIKAANGVVLATEKKVPS 49 (227)
T ss_pred HHHHHHHHHHcCC-------------------CEEEEEeCCEEEEEEeecCCc
Confidence 9999999988877 799999999999999987654
No 53
>cd03749 proteasome_alpha_type_1 proteasome_alpha_type_1. The 20S proteasome, multisubunit proteolytic complex, is the central enzyme of nonlysosomal protein degradation in both the cytosol and nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis. Mammals have 7 alpha and 7 beta proteasome subunits while archaea have one of each.
Probab=86.79 E-value=0.19 Score=45.00 Aligned_cols=34 Identities=6% Similarity=-0.028 Sum_probs=29.6
Q ss_pred ccccccccccccccCCCCCCCCccccccCCccccccccccCCccccCCCCCCC
Q psy14210 67 QRSHCVAETQQDHFLSPPLSQSSQHIISGDSCELLHPVYTGGERCGPFSQSST 119 (312)
Q Consensus 67 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dgVv~~~~~~~~~ 119 (312)
|.+||..+..++. +++|++++||||++++++.+.
T Consensus 16 Qveya~~av~~G~-------------------t~IgIk~~dgVvlaad~r~~~ 49 (211)
T cd03749 16 QVEYAMEAVKQGS-------------------ATVGLKSKTHAVLVALKRATS 49 (211)
T ss_pred HHHHHHHHHhcCC-------------------CEEEEEeCCEEEEEEeccCcc
Confidence 8999998887766 789999999999999987554
No 54
>cd03753 proteasome_alpha_type_5 proteasome_alpha_type_5. The 20S proteasome, multisubunit proteolytic complex, is the central enzyme of nonlysosomal protein degradation in both the cytosol and nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis. Mammals have 7 alpha and 7 beta proteasome subunits while archaea have one of each.
Probab=85.67 E-value=0.26 Score=44.16 Aligned_cols=34 Identities=6% Similarity=-0.061 Sum_probs=30.1
Q ss_pred ccccccccccccccCCCCCCCCccccccCCccccccccccCCccccCCCCCCC
Q psy14210 67 QRSHCVAETQQDHFLSPPLSQSSQHIISGDSCELLHPVYTGGERCGPFSQSST 119 (312)
Q Consensus 67 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dgVv~~~~~~~~~ 119 (312)
|.+||..+..|+. +++|++++|||++++|++.+.
T Consensus 16 Q~eya~~a~~~G~-------------------t~igik~~dgVvlaad~r~~~ 49 (213)
T cd03753 16 QVEYAIEAIKLGS-------------------TAIGIKTKEGVVLAVEKRITS 49 (213)
T ss_pred HHHHHHHHHhcCC-------------------CEEEEEeCCEEEEEEecccCC
Confidence 8999998888877 899999999999999987654
No 55
>PF09894 DUF2121: Uncharacterized protein conserved in archaea (DUF2121); InterPro: IPR016754 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function. They do show distant similarity to NTPases and to nucleic acid binding enzymes.
Probab=85.56 E-value=3 Score=37.11 Aligned_cols=49 Identities=12% Similarity=0.161 Sum_probs=42.2
Q ss_pred HHHHHHHHhhCCCCCCHHHHHHHHHHHHHHHHHhcCcCCCcEEEEEEEC
Q psy14210 236 EYAQAILDTDYRPDLSEEEAYALATSAIYHACRRDIHSGGCVRLYKING 284 (312)
Q Consensus 236 ~~a~~~Le~~y~~~ms~eEAi~la~kaL~~a~~rD~~sg~~ieI~iItk 284 (312)
+.+...|.++|++.|+++++.++..++|..+.......+..+++...++
T Consensus 131 ~ia~~~lkk~~~~k~~l~~i~~i~~~i~~~~a~~tpsvS~~~d~~~~~~ 179 (194)
T PF09894_consen 131 EIANKELKKYWKPKMSLKDIENIFEKIMEEVASKTPSVSKEYDIYITTK 179 (194)
T ss_pred HHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHhhcCCCccCcEEEEEecc
Confidence 5566788889999999999999999999999877777778888887765
No 56
>cd03755 proteasome_alpha_type_7 proteasome_alpha_type_7. The 20S proteasome, multisubunit proteolytic complex, is the central enzyme of nonlysosomal protein degradation in both the cytosol and nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis. Mammals have 7 alpha and 7 beta proteasome subunits while archaea have one of each.
Probab=84.63 E-value=0.31 Score=43.47 Aligned_cols=34 Identities=9% Similarity=-0.106 Sum_probs=29.9
Q ss_pred ccccccccccccccCCCCCCCCccccccCCccccccccccCCccccCCCCCCC
Q psy14210 67 QRSHCVAETQQDHFLSPPLSQSSQHIISGDSCELLHPVYTGGERCGPFSQSST 119 (312)
Q Consensus 67 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dgVv~~~~~~~~~ 119 (312)
|.+||..+..++. +++|++++|||++++|++...
T Consensus 16 Qveya~~av~~G~-------------------t~Igik~~dgVvlaad~~~~~ 49 (207)
T cd03755 16 QVEYAQEAVRKGT-------------------TAVGVRGKDCVVLGVEKKSVA 49 (207)
T ss_pred HHHHHHHHHHcCC-------------------CEEEEEeCCEEEEEEecCCCC
Confidence 8999999988877 899999999999999986543
No 57
>PRK03996 proteasome subunit alpha; Provisional
Probab=84.30 E-value=0.32 Score=44.47 Aligned_cols=34 Identities=6% Similarity=-0.075 Sum_probs=30.3
Q ss_pred ccccccccccccccCCCCCCCCccccccCCccccccccccCCccccCCCCCCC
Q psy14210 67 QRSHCVAETQQDHFLSPPLSQSSQHIISGDSCELLHPVYTGGERCGPFSQSST 119 (312)
Q Consensus 67 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dgVv~~~~~~~~~ 119 (312)
|.+||..+..++. +++|++++||||+|+|++.+.
T Consensus 25 Q~eya~~av~~G~-------------------t~igik~~dgVvlaad~r~~~ 58 (241)
T PRK03996 25 QVEYAREAVKRGT-------------------TAVGVKTKDGVVLAVDKRITS 58 (241)
T ss_pred HHHHHHHHHHhCC-------------------CEEEEEeCCEEEEEEeccCCC
Confidence 9999999888877 789999999999999987654
No 58
>cd03751 proteasome_alpha_type_3 proteasome_alpha_type_3. The 20S proteasome, multisubunit proteolytic complex, is the central enzyme of nonlysosomal protein degradation in both the cytosol and nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis. Mammals have 7 alpha and 7 beta proteasome subunits while archaea have one of each.
Probab=83.73 E-value=0.32 Score=43.71 Aligned_cols=34 Identities=6% Similarity=-0.097 Sum_probs=29.8
Q ss_pred ccccccccccccccCCCCCCCCccccccCCccccccccccCCccccCCCCCCC
Q psy14210 67 QRSHCVAETQQDHFLSPPLSQSSQHIISGDSCELLHPVYTGGERCGPFSQSST 119 (312)
Q Consensus 67 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dgVv~~~~~~~~~ 119 (312)
|.+||+.+..++. +++|++++|||++|+|.+.+.
T Consensus 19 Qveya~~a~~~G~-------------------tvIgik~kdgVvla~d~r~~~ 52 (212)
T cd03751 19 QVEYANKAVENSG-------------------TAIGIRCKDGVVLAVEKLVTS 52 (212)
T ss_pred HHHHHHHHHhcCC-------------------CEEEEEeCCEEEEEEEccccc
Confidence 9999999988777 789999999999999987644
No 59
>TIGR03633 arc_protsome_A proteasome endopeptidase complex, archaeal, alpha subunit. This protein family describes the archaeal proteasome alpha subunit, homologous to both the beta subunit and to the alpha and beta subunits of eukaryotic proteasome subunits. This family is universal in the first 29 complete archaeal genomes but occasionally is duplicated.
Probab=82.81 E-value=0.4 Score=43.27 Aligned_cols=34 Identities=6% Similarity=-0.082 Sum_probs=29.7
Q ss_pred ccccccccccccccCCCCCCCCccccccCCccccccccccCCccccCCCCCCC
Q psy14210 67 QRSHCVAETQQDHFLSPPLSQSSQHIISGDSCELLHPVYTGGERCGPFSQSST 119 (312)
Q Consensus 67 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dgVv~~~~~~~~~ 119 (312)
|.+||+.+..++. +++|++++||||+++|++.+.
T Consensus 18 Qieya~~av~~G~-------------------tvigi~~~dgvvlaad~r~~~ 51 (224)
T TIGR03633 18 QVEYAREAVKRGT-------------------TAVGIKTKDGVVLAVDKRITS 51 (224)
T ss_pred HHHHHHHHHHcCC-------------------CEEEEEECCEEEEEEeccCCc
Confidence 8999998887776 799999999999999987653
No 60
>cd03756 proteasome_alpha_archeal proteasome_alpha_archeal. The 20S proteasome, multisubunit proteolytic complex, is the central enzyme of nonlysosomal protein degradation in both the cytosol and nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis. Mammals have 7 alpha and 7 beta proteasome subunits while archaea have one of each.
Probab=79.72 E-value=0.6 Score=41.72 Aligned_cols=34 Identities=9% Similarity=-0.056 Sum_probs=29.6
Q ss_pred ccccccccccccccCCCCCCCCccccccCCccccccccccCCccccCCCCCCC
Q psy14210 67 QRSHCVAETQQDHFLSPPLSQSSQHIISGDSCELLHPVYTGGERCGPFSQSST 119 (312)
Q Consensus 67 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dgVv~~~~~~~~~ 119 (312)
|.+||+.+..++. +++|++++|||++++|++...
T Consensus 17 Q~eya~~av~~G~-------------------t~igik~~dgvvla~d~~~~~ 50 (211)
T cd03756 17 QVEYAREAVKRGT-------------------TALGIKCKEGVVLAVDKRITS 50 (211)
T ss_pred HHHHHHHHHHcCC-------------------CEEEEEECCEEEEEEeccCCC
Confidence 8899988888777 789999999999999987643
No 61
>COG4079 Uncharacterized protein conserved in archaea [Function unknown]
Probab=79.26 E-value=4.5 Score=37.38 Aligned_cols=65 Identities=9% Similarity=0.165 Sum_probs=52.8
Q ss_pred HHHHHHHHhhCCCCCCHHHHHHHHHHHHHHHHHhcCcCCCcEEEEEEEC--CCeEEeChhHHHHHHH
Q psy14210 236 EYAQAILDTDYRPDLSEEEAYALATSAIYHACRRDIHSGGCVRLYKING--QGWQQVLSRDVKDIYN 300 (312)
Q Consensus 236 ~~a~~~Le~~y~~~ms~eEAi~la~kaL~~a~~rD~~sg~~ieI~iItk--~G~~~l~~~eI~~~l~ 300 (312)
..+..+|.++|.+.++++++.++..++|..+...-...+..++++.+.+ +.+.++-+.+++.+.+
T Consensus 132 e~aneflk~~l~~k~~lqd~~dal~elfe~vss~tpsVskeydiy~vs~~~d~~~rl~kkDie~L~k 198 (293)
T COG4079 132 EVANEFLKDNLTKKSKLQDAVDALMELFETVSSKTPSVSKEYDIYQVSSNVDPVLRLVKKDIETLRK 198 (293)
T ss_pred HHHHHHHHhhccCCCCHHHHHHHHHHHHHHhhcCCCcccceeEEEEecCCcCHHHHHHHHHHHHHHH
Confidence 4456788889999999999999999999998866666778899999887 3466677788877765
No 62
>cd03754 proteasome_alpha_type_6 proteasome_alpha_type_6. The 20S proteasome, multisubunit proteolytic complex, is the central enzyme of nonlysosomal protein degradation in both the cytosol and nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis. Mammals have 7 alpha and 7 beta proteasome subunits while archaea have one of each.
Probab=78.78 E-value=0.64 Score=41.80 Aligned_cols=35 Identities=3% Similarity=-0.184 Sum_probs=29.2
Q ss_pred ccccccccccccccCCCCCCCCccccccCCccccccccccCCccccCCCCCCC
Q psy14210 67 QRSHCVAETQQDHFLSPPLSQSSQHIISGDSCELLHPVYTGGERCGPFSQSST 119 (312)
Q Consensus 67 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dgVv~~~~~~~~~ 119 (312)
|++||..+.+|.. .+++|++++|+|++++|++...
T Consensus 17 Qveya~~a~~~~g------------------~t~igi~~~d~Vvlaad~r~~~ 51 (215)
T cd03754 17 QVEYAFKAVKNAG------------------LTSVAVRGKDCAVVVTQKKVPD 51 (215)
T ss_pred HHHhHHHHHhcCC------------------ccEEEEEeCCEEEEEEeccccc
Confidence 9999999987743 3689999999999999977543
No 63
>KOG3361|consensus
Probab=77.36 E-value=3.1 Score=34.90 Aligned_cols=80 Identities=21% Similarity=0.265 Sum_probs=58.5
Q ss_pred EEEcCCceEEecCeeeEccChHHHHHHHHhhCCCCCCHHHHHHHHHHHHHHHHHhcCcCCCcEEEEEEECCCeEEeChhH
Q psy14210 215 YMLDNTGLLIEGTKFCVGSGAEYAQAILDTDYRPDLSEEEAYALATSAIYHACRRDIHSGGCVRLYKINGQGWQQVLSRD 294 (312)
Q Consensus 215 y~iDpsGs~~e~~~~AiGsGs~~a~~~Le~~y~~~ms~eEAi~la~kaL~~a~~rD~~sg~~ieI~iItk~G~~~l~~~e 294 (312)
..+|-+|-+...+|-..|.||..+.+-+-..|-..+|+|||.++--.-+.. + .+-.++.+. +..|-++-
T Consensus 71 Ikvd~~g~I~dakFKTFGCGSAIASSS~aTewvkgkt~dea~kIkNteIAK--e---L~LPPVKLH------CSMLAEDA 139 (157)
T KOG3361|consen 71 IKVDDSGVIEDAKFKTFGCGSAIASSSLATEWVKGKTLDEALKIKNTEIAK--E---LSLPPVKLH------CSMLAEDA 139 (157)
T ss_pred EEECCCCcEEEeeeeecccchHhhhhHHHHHHHccccHHHHHhcccHHHHH--h---ccCCchhhh------hHHHHHHH
Confidence 467889999999999999999999999999999999999997653322221 1 122333332 34567788
Q ss_pred HHHHHHHHhcC
Q psy14210 295 VKDIYNDRKEA 305 (312)
Q Consensus 295 I~~~l~~~~~~ 305 (312)
|..-+++++++
T Consensus 140 IKaAikdyk~K 150 (157)
T KOG3361|consen 140 IKAAIKDYKEK 150 (157)
T ss_pred HHHHHHHHHHh
Confidence 88888777643
No 64
>cd01911 proteasome_alpha proteasome alpha subunit. The 20S proteasome, multisubunit proteolytic complex, is the central enzyme of nonlysosomal protein degradation in both the cytosol and nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis. Mammals have 7 different alpha and 10 different beta proteasome subunit genes while archaea have one of each.
Probab=75.07 E-value=0.7 Score=41.14 Aligned_cols=33 Identities=6% Similarity=-0.076 Sum_probs=26.9
Q ss_pred ccccccccccccccCCCCCCCCccccccCCccccccccccCCccccCCCCCC
Q psy14210 67 QRSHCVAETQQDHFLSPPLSQSSQHIISGDSCELLHPVYTGGERCGPFSQSS 118 (312)
Q Consensus 67 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dgVv~~~~~~~~ 118 (312)
|.+|++.+..++. +++|++++|||++++|++.+
T Consensus 16 q~eya~~~~~~G~-------------------tvigi~~~dgVvlaaD~~~~ 48 (209)
T cd01911 16 QVEYALEAVKNGS-------------------TAVGIKGKDGVVLAVEKKVT 48 (209)
T ss_pred HHHHHHHHHHcCC-------------------CEEEEEECCEEEEEEEecCC
Confidence 7777776665555 79999999999999997754
No 65
>KOG0184|consensus
Probab=74.70 E-value=0.97 Score=40.99 Aligned_cols=78 Identities=9% Similarity=-0.060 Sum_probs=48.9
Q ss_pred ccccccccccccccCCCCCCCCccccccCCccccccccccCCccccCCCCCCCCCCCCcceEEEecCeEEEEEeCChhHH
Q psy14210 67 QRSHCVAETQQDHFLSPPLSQSSQHIISGDSCELLHPVYTGGERCGPFSQSSTVPHNTSFQVIPVSSSILCTLAGNAADC 146 (312)
Q Consensus 67 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dgVv~~~~~~~~~~~~~~~~KI~~I~d~i~~a~sG~~aD~ 146 (312)
|.+|||.+-+-.. ..+|++++||||++.++--.++ ++..+.+
T Consensus 23 QveYA~KAven~~-------------------T~IGIk~kdGVVl~vEKli~Sk-------Ly~p~sn------------ 64 (254)
T KOG0184|consen 23 QVEYAQKAVENSG-------------------TCIGIKCKDGVVLAVEKLITSK-------LYEPGSN------------ 64 (254)
T ss_pred hHHHHHHHHhcCC-------------------cEEEEecCCeEEEEEeeeeccc-------ccccCCC------------
Confidence 8999988877655 6899999999999999765554 4444433
Q ss_pred HHHHHHHHHHhhhhh-hhcCCccCHHHHHHHHHHHHHHhcc
Q psy14210 147 VYWLHSLAKECKGYE-CKYRTGMTIRHAANLLVNMVRKYRT 186 (312)
Q Consensus 147 q~l~~~lr~~~~~~~-~~~g~~i~v~~la~~ls~~l~~~~~ 186 (312)
+++...-+.-- -..|.-..-..++++..+....++.
T Consensus 65 ----~ri~~V~r~iG~avaGl~~Dg~~l~~~ar~ea~~~~~ 101 (254)
T KOG0184|consen 65 ----ERIFSVDRHIGMAVAGLIPDGRHLVNRARDEAASWRK 101 (254)
T ss_pred ----CceEeecccccEEEeccccchHHHHHHHHHHHHHHHH
Confidence 11111000000 1124445667777777777777765
No 66
>COG0638 PRE1 20S proteasome, alpha and beta subunits [Posttranslational modification, protein turnover, chaperones]
Probab=74.46 E-value=1 Score=41.33 Aligned_cols=25 Identities=4% Similarity=-0.182 Sum_probs=21.1
Q ss_pred cccccccccCCccccCCCCCCCCCC
Q psy14210 98 CELLHPVYTGGERCGPFSQSSTVPH 122 (312)
Q Consensus 98 ~~~~~~~~~dgVv~~~~~~~~~~~~ 122 (312)
-+++|++++||||+++|++.++-+.
T Consensus 31 tT~vgik~~dgVVlaadkr~t~~~~ 55 (236)
T COG0638 31 TTTVGIKGKDGVVLAADKRATSGLL 55 (236)
T ss_pred ceEEEEEecCEEEEEEeccCCCCce
Confidence 3689999999999999998776533
No 67
>KOG0174|consensus
Probab=63.71 E-value=3.3 Score=36.89 Aligned_cols=24 Identities=29% Similarity=0.401 Sum_probs=20.3
Q ss_pred CccccccccccCCccccCCCCCCC
Q psy14210 96 DSCELLHPVYTGGERCGPFSQSST 119 (312)
Q Consensus 96 ~~~~~~~~~~~dgVv~~~~~~~~~ 119 (312)
.+-.|+++.|+||||+++||+.+.
T Consensus 18 tGTTImAv~y~gGVvlGaDSRTs~ 41 (224)
T KOG0174|consen 18 TGTTIMAVEYDGGVVLGADSRTST 41 (224)
T ss_pred cCceEEEEEEcCcEEEeccCCccc
Confidence 344599999999999999998665
No 68
>KOG0185|consensus
Probab=60.50 E-value=4.2 Score=37.27 Aligned_cols=66 Identities=20% Similarity=0.143 Sum_probs=38.1
Q ss_pred CCCCCccccccCCccccccccccCCccccCCCCCCCCCCCCcceEEEecCeEEEEEeCChhHHHHHHH
Q psy14210 84 PLSQSSQHIISGDSCELLHPVYTGGERCGPFSQSSTVPHNTSFQVIPVSSSILCTLAGNAADCVYWLH 151 (312)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~dgVv~~~~~~~~~~~~~~~~KI~~I~d~i~~a~sG~~aD~q~l~~ 151 (312)
|.-+.-+|+--|++ |++++|+|||++|+|...+.=.---...|-+|-+-===..-|..+|+..+..
T Consensus 30 ~~qrt~~p~vTGTS--Vla~ky~~GVviaaD~lgSYGslaR~~nVeRi~kVgdntllG~sGdisD~Q~ 95 (256)
T KOG0185|consen 30 PIQRTLNPIVTGTS--VLALKYKDGVVIAADTLGSYGSLARYKNVERIFKVGDNTLLGASGDISDFQY 95 (256)
T ss_pred CcccccCceeccce--EEEEEecCceEEEecccccchhhhhhcCceeeEEecCceEEecCccHHHHHH
Confidence 33444566777777 7999999999999995443310000111433322222346677777766654
No 69
>cd03759 proteasome_beta_type_3 proteasome beta type-3 subunit. The 20S proteasome, multisubunit proteolytic complex, is the central enzyme of nonlysosomal protein degradation in both the cytosol and nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis. Mammals have 7 alpha and 7 beta proteasome subunits while archaea have one of each.
Probab=60.12 E-value=3.4 Score=36.36 Aligned_cols=23 Identities=0% Similarity=-0.234 Sum_probs=19.5
Q ss_pred ccccccccccCCccccCCCCCCC
Q psy14210 97 SCELLHPVYTGGERCGPFSQSST 119 (312)
Q Consensus 97 ~~~~~~~~~~dgVv~~~~~~~~~ 119 (312)
+..++|++++|||++|+|++...
T Consensus 3 G~t~igik~~dgVvlaad~~~~~ 25 (195)
T cd03759 3 GGAVVAMAGKDCVAIASDLRLGV 25 (195)
T ss_pred CceEEEEEcCCEEEEEEcccccc
Confidence 45689999999999999987544
No 70
>KOG0173|consensus
Probab=58.90 E-value=4.7 Score=37.29 Aligned_cols=144 Identities=15% Similarity=0.222 Sum_probs=76.2
Q ss_pred ccCCCccccccccccccccccCCCCCCCCccccccCCccccccccccCCccccCCCCCCCCCCCCcceEEEecCeEEEEE
Q psy14210 60 RCGQSYSQRSHCVAETQQDHFLSPPLSQSSQHIISGDSCELLHPVYTGGERCGPFSQSSTVPHNTSFQVIPVSSSILCTL 139 (312)
Q Consensus 60 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dgVv~~~~~~~~~~~~~~~~KI~~I~d~i~~a~ 139 (312)
|.|-+|.-|.-++..-+.+ +.|| .+...+-.|++++|+|||++++|.+.+-=+ |+ -++|+
T Consensus 9 r~gfsf~nc~rn~~l~~~g--~k~p-------~~tkTGTtIvgv~~k~gvIlgADtRaT~G~------Iv-aDKnC---- 68 (271)
T KOG0173|consen 9 RGGFSFDNCQRNAALLKKG--LKAP-------KATKTGTTIVGVIFKDGVILGADTRATEGP------IV-ADKNC---- 68 (271)
T ss_pred cCCCChhhhhhHHHHHhcC--CCCC-------cccccCcEEEEEEeCCeEEEeecccccCCC------ee-ecchh----
Confidence 5555554444443333333 2333 455667789999999999999997754310 11 12221
Q ss_pred eCChhHHHHHHHHHHHHhh-hhhhhcCCccCHHHHHHHHHHHHHHhccCCCCCCCCCCcccceee----eEEecCCCCe-
Q psy14210 140 AGNAADCVYWLHSLAKECK-GYECKYRTGMTIRHAANLLVNMVRKYRTGNHSSKIPNGLSFGTLM----AAYDEILGPQ- 213 (312)
Q Consensus 140 sG~~aD~q~l~~~lr~~~~-~~~~~~g~~i~v~~la~~ls~~l~~~~~~~~~~~rP~gls~~~II----aG~D~~~gp~- 213 (312)
+.+..... .|----+..-+.+.....++..+..++. +.++.|--+.+.-++ .=|...-+..
T Consensus 69 -----------~KIH~ia~~IyccGAGtAADte~vt~m~ss~l~Lh~l--~t~R~~rVv~A~~mlkQ~LFrYqG~IgA~L 135 (271)
T KOG0173|consen 69 -----------EKIHFIAPNIYCCGAGTAADTEMVTRMISSNLELHRL--NTGRKPRVVTALRMLKQHLFRYQGHIGAAL 135 (271)
T ss_pred -----------HHHhhcccceEEccCCchhhHHHHHHHHHHHHHHHHh--ccCCCCceeeHHHHHHHHHHHhcCccccee
Confidence 22222211 1222334556777788888888887777 667777422211111 0011101222
Q ss_pred -EEEEcCCceEEecCeeeEccChHH
Q psy14210 214 -LYMLDNTGLLIEGTKFCVGSGAEY 237 (312)
Q Consensus 214 -Ly~iDpsGs~~e~~~~AiGsGs~~ 237 (312)
|.-+|+.|.-.. ...+.|+-...
T Consensus 136 iiGGvD~TGpHLy-~i~phGStd~~ 159 (271)
T KOG0173|consen 136 ILGGVDPTGPHLY-SIHPHGSTDKL 159 (271)
T ss_pred EEccccCCCCceE-EEcCCCCcCcc
Confidence 566899887653 23455654433
No 71
>cd03757 proteasome_beta_type_1 proteasome beta type-1 subunit. The 20S proteasome, multisubunit proteolytic complex, is the central enzyme of nonlysosomal protein degradation in both the cytosol and nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis. Mammals have 7 alpha and 7 beta proteasome subunits while archaea have one of each.
Probab=58.09 E-value=3.8 Score=36.67 Aligned_cols=24 Identities=8% Similarity=-0.230 Sum_probs=20.3
Q ss_pred ccccccccccCCccccCCCCCCCC
Q psy14210 97 SCELLHPVYTGGERCGPFSQSSTV 120 (312)
Q Consensus 97 ~~~~~~~~~~dgVv~~~~~~~~~~ 120 (312)
+..++|++++|||++|+|++.+..
T Consensus 8 G~Tvigik~~dgVvlaaD~r~~~~ 31 (212)
T cd03757 8 GGTVLAIAGNDFAVIAGDTRLSEG 31 (212)
T ss_pred CccEEEEEcCCEEEEEECCccccC
Confidence 556899999999999999876553
No 72
>cd01906 proteasome_protease_HslV proteasome_protease_HslV. This group contains the eukaryotic proteosome alpha and beta subunits and the prokaryotic protease hslV subunit. Proteasomes are large multimeric self-compartmentalizing proteases, involved in the clearance of misfolded proteins, the breakdown of regulatory proteins, and the processing of proteins such as the preparation of peptides for immune presentation. Two main proteasomal types are distinguished by their different tertiary structures: the eukaryotic/archeal 20S proteasome and the prokaryotic proteasome-like heat shock protein encoded by heat shock locus V, hslV. The proteasome core particle is a highly conserved cylindrical structure made up of non-identical subunits that have their active sites on the inner walls of a large central cavity. The proteasome subunits of bacteria, archaea, and eukaryotes all share a conserved Ntn (N terminal nucleophile) hydrolase fold and a catalytic mechanism involving an N-terminal nucleo
Probab=54.35 E-value=5.4 Score=34.10 Aligned_cols=22 Identities=5% Similarity=-0.106 Sum_probs=18.9
Q ss_pred ccccccccCCccccCCCCCCCC
Q psy14210 99 ELLHPVYTGGERCGPFSQSSTV 120 (312)
Q Consensus 99 ~~~~~~~~dgVv~~~~~~~~~~ 120 (312)
.++|++++|||++++|++.+.-
T Consensus 2 t~igi~~~dgvvla~d~~~~~~ 23 (182)
T cd01906 2 TIVGIKGKDGVVLAADKRVTSG 23 (182)
T ss_pred cEEEEEeCCEEEEEEecccCCc
Confidence 4799999999999999886654
No 73
>KOG0183|consensus
Probab=54.33 E-value=2.9 Score=37.81 Aligned_cols=46 Identities=11% Similarity=-0.057 Sum_probs=39.0
Q ss_pred ccccccccccccccCCCCCCCCccccccCCccccccccccCCccccCCCCCCCCCCCCcceEEEec
Q psy14210 67 QRSHCVAETQQDHFLSPPLSQSSQHIISGDSCELLHPVYTGGERCGPFSQSSTVPHNTSFQVIPVS 132 (312)
Q Consensus 67 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dgVv~~~~~~~~~~~~~~~~KI~~I~ 132 (312)
|++|||.+..|++ .++|++.++-|+++..+.+...+.+... +++|.
T Consensus 19 QVEYAqEAvrkGs-------------------taVgvrg~~~vvlgvEkkSv~~Lq~~r~-~rkI~ 64 (249)
T KOG0183|consen 19 QVEYAQEAVRKGS-------------------TAVGVRGNNCVVLGVEKKSVPKLQDERT-VRKIS 64 (249)
T ss_pred eeHhHHHHHhcCc-------------------eEEEeccCceEEEEEeecchhhhhhhhh-hhhhe
Confidence 9999999999999 6899999999999999888777665444 77664
No 74
>TIGR03691 20S_bact_alpha proteasome, alpha subunit, bacterial type. Members of this family are the alpha subunit of the 20S proteasome as found in Actinobacteria such as Mycobacterium, Rhodococcus, and Streptomyces. In most Actinobacteria (an exception is Propionibacterium acnes), the proteasome is accompanied by a system of tagging proteins for degradation with Pup.
Probab=54.20 E-value=3.5 Score=37.62 Aligned_cols=30 Identities=7% Similarity=-0.007 Sum_probs=24.6
Q ss_pred cccccccccccccCCCCCCCCccccccCCccccccccccCCccccCCCC
Q psy14210 68 RSHCVAETQQDHFLSPPLSQSSQHIISGDSCELLHPVYTGGERCGPFSQ 116 (312)
Q Consensus 68 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dgVv~~~~~~ 116 (312)
++||..+-.++. +++|++++||||++++++
T Consensus 17 ~EYA~kav~~g~-------------------T~VGIk~kdgVVLaaek~ 46 (228)
T TIGR03691 17 AELARKGIARGR-------------------SVVVLTYADGILFVAENP 46 (228)
T ss_pred HHHHHHHHHcCC-------------------cEEEEEeCCeEEEEEecC
Confidence 567776666655 899999999999999985
No 75
>cd01912 proteasome_beta proteasome beta subunit. The 20S proteasome, multisubunit proteolytic complex, is the central enzyme of nonlysosomal protein degradation in both the cytosol and nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis. Mammals have 7 alpha and 7 beta proteasome subunits while archaea have one of each.
Probab=52.56 E-value=4.6 Score=35.00 Aligned_cols=22 Identities=9% Similarity=-0.056 Sum_probs=19.0
Q ss_pred ccccccccCCccccCCCCCCCC
Q psy14210 99 ELLHPVYTGGERCGPFSQSSTV 120 (312)
Q Consensus 99 ~~~~~~~~dgVv~~~~~~~~~~ 120 (312)
.+++++++|||++|+|++.+..
T Consensus 2 t~i~i~~~dgVvla~d~~~~~~ 23 (189)
T cd01912 2 TIVGIKGKDGVVLAADTRASAG 23 (189)
T ss_pred cEEEEEeCCEEEEEEcCCcccC
Confidence 4789999999999999886654
No 76
>cd03762 proteasome_beta_type_6 proteasome beta type-6 subunit. The 20S proteasome, multisubunit proteolytic complex, is the central enzyme of nonlysosomal protein degradation in both the cytosol and nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis. Mammals have 7 alpha and 7 beta proteasome subunits while archaea have one of each.
Probab=51.00 E-value=6 Score=34.43 Aligned_cols=21 Identities=33% Similarity=0.460 Sum_probs=18.1
Q ss_pred ccccccccCCccccCCCCCCC
Q psy14210 99 ELLHPVYTGGERCGPFSQSST 119 (312)
Q Consensus 99 ~~~~~~~~dgVv~~~~~~~~~ 119 (312)
.++|++++|||++++|++.+.
T Consensus 2 t~igi~~~dgVvla~D~r~~~ 22 (188)
T cd03762 2 TIIAVEYDGGVVLGADSRTST 22 (188)
T ss_pred eEEEEEECCeEEEEEcccccC
Confidence 479999999999999987654
No 77
>cd03763 proteasome_beta_type_7 proteasome beta type-7 subunit. The 20S proteasome, multisubunit proteolytic complex, is the central enzyme of nonlysosomal protein degradation in both the cytosol and nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis. Mammals have 7 alpha and 7 beta proteasome subunits while archaea have one of each.
Probab=50.29 E-value=5.8 Score=34.63 Aligned_cols=21 Identities=14% Similarity=0.305 Sum_probs=18.2
Q ss_pred ccccccccCCccccCCCCCCC
Q psy14210 99 ELLHPVYTGGERCGPFSQSST 119 (312)
Q Consensus 99 ~~~~~~~~dgVv~~~~~~~~~ 119 (312)
+++|++++||||+++|++-+.
T Consensus 2 t~igi~~~dgvvlaad~r~~~ 22 (189)
T cd03763 2 TIVGVVFKDGVVLGADTRATE 22 (189)
T ss_pred eEEEEEECCeEEEEEcCCccc
Confidence 579999999999999987554
No 78
>cd03760 proteasome_beta_type_4 proteasome beta type-4 subunit. The 20S proteasome, multisubunit proteolytic complex, is the central enzyme of nonlysosomal protein degradation in both the cytosol and nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis.Mammals have 7 alpha and 7 beta proteasome subunits while archaea have one of each.
Probab=47.55 E-value=7.7 Score=34.13 Aligned_cols=22 Identities=14% Similarity=0.117 Sum_probs=18.7
Q ss_pred ccccccccccCCccccCCCCCC
Q psy14210 97 SCELLHPVYTGGERCGPFSQSS 118 (312)
Q Consensus 97 ~~~~~~~~~~dgVv~~~~~~~~ 118 (312)
+..++|++++|||++|+|++.+
T Consensus 2 G~T~igi~~kdgVvlaad~r~~ 23 (197)
T cd03760 2 GTSVIAIKYKDGVIIAADTLGS 23 (197)
T ss_pred CceEEEEEeCCcEEEEEcCccc
Confidence 3468999999999999998754
No 79
>TIGR03634 arc_protsome_B proteasome endopeptidase complex, archaeal, beta subunit. This protein family describes the archaeal proteasome beta subunit, homologous to both the alpha subunit and to the alpha and beta subunits of eukaryotic proteasome subunits. This family is universal in the first 29 complete archaeal genomes but occasionally is duplicated.
Probab=46.51 E-value=7.7 Score=33.60 Aligned_cols=21 Identities=10% Similarity=-0.056 Sum_probs=18.1
Q ss_pred cccccccccCCccccCCCCCC
Q psy14210 98 CELLHPVYTGGERCGPFSQSS 118 (312)
Q Consensus 98 ~~~~~~~~~dgVv~~~~~~~~ 118 (312)
..++|++++|||++++|++.+
T Consensus 2 ~t~igi~~~dgVvla~d~~~~ 22 (185)
T TIGR03634 2 TTTVGIKCKDGVVLAADKRAS 22 (185)
T ss_pred CcEEEEEeCCEEEEEEcCccc
Confidence 358999999999999998754
No 80
>cd03761 proteasome_beta_type_5 proteasome beta type-5 subunit. The 20S proteasome, multisubunit proteolytic complex, is the central enzyme of nonlysosomal protein degradation in both the cytosol and nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis. Mammals have 7 alpha and 7 beta proteasome subunits while archaea have one of each.
Probab=45.19 E-value=8.2 Score=33.72 Aligned_cols=21 Identities=19% Similarity=0.259 Sum_probs=18.2
Q ss_pred ccccccccCCccccCCCCCCC
Q psy14210 99 ELLHPVYTGGERCGPFSQSST 119 (312)
Q Consensus 99 ~~~~~~~~dgVv~~~~~~~~~ 119 (312)
.++|++++|||++|+|++.+.
T Consensus 2 T~igi~~kdgVvla~d~r~~~ 22 (188)
T cd03761 2 TTLAFIFQGGVIVAVDSRATA 22 (188)
T ss_pred cEEEEEECCEEEEEEcCCccC
Confidence 478999999999999987654
No 81
>cd03765 proteasome_beta_bacterial Bacterial proteasome, beta subunit. The 20S proteasome, multisubunit proteolytic complex, is the central enzyme of nonlysosomal protein degradation in both the cytosol and nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis. Mammals have 7 alpha and 7 beta proteasome subunits while archaea have one of each.
Probab=44.88 E-value=11 Score=34.73 Aligned_cols=20 Identities=15% Similarity=0.026 Sum_probs=17.2
Q ss_pred cccccccCCccccCCCCCCC
Q psy14210 100 LLHPVYTGGERCGPFSQSST 119 (312)
Q Consensus 100 ~~~~~~~dgVv~~~~~~~~~ 119 (312)
.+|++++||||+++|++.+.
T Consensus 3 ~vGIk~kdGVVLaadkr~~~ 22 (236)
T cd03765 3 CLGIKLDAGLVFASDSRTNA 22 (236)
T ss_pred EEEEEeCCeEEEEEccCccC
Confidence 58999999999999988543
No 82
>TIGR03692 ATP_dep_HslV ATP-dependent protease HslVU, peptidase subunit. The ATP-dependent protease HslVU, a complex of hexameric HslU active as a protein-unfolding ATPase and dodecameric HslV, the catalytic threonine protease.
Probab=44.55 E-value=7 Score=34.19 Aligned_cols=20 Identities=15% Similarity=-0.009 Sum_probs=17.4
Q ss_pred ccccccccCCccccCCCCCC
Q psy14210 99 ELLHPVYTGGERCGPFSQSS 118 (312)
Q Consensus 99 ~~~~~~~~dgVv~~~~~~~~ 118 (312)
.+++++++|||++|+|++.+
T Consensus 2 Tivgi~~~dgVvlaaD~r~s 21 (171)
T TIGR03692 2 TILAVRRNGKVVIAGDGQVT 21 (171)
T ss_pred eEEEEEECCEEEEEECCceE
Confidence 47899999999999998754
No 83
>PRK05456 ATP-dependent protease subunit HslV; Provisional
Probab=44.44 E-value=7.1 Score=34.09 Aligned_cols=20 Identities=15% Similarity=0.014 Sum_probs=17.5
Q ss_pred ccccccccCCccccCCCCCC
Q psy14210 99 ELLHPVYTGGERCGPFSQSS 118 (312)
Q Consensus 99 ~~~~~~~~dgVv~~~~~~~~ 118 (312)
.+++++++|||++|+|++.+
T Consensus 3 Tivgi~~~dgVvlaaD~r~s 22 (172)
T PRK05456 3 TILAVRRNGKVAIAGDGQVT 22 (172)
T ss_pred EEEEEEECCEEEEEECCceE
Confidence 47999999999999998753
No 84
>cd03758 proteasome_beta_type_2 proteasome beta type-2 subunit. The 20S proteasome, multisubunit proteolytic complex, is the central enzyme of nonlysosomal protein degradation in both the cytosol and nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis.Mammals have 7 alpha and 7 beta proteasome subunits while archaea have one of each.
Probab=44.07 E-value=6.9 Score=34.38 Aligned_cols=21 Identities=5% Similarity=-0.216 Sum_probs=18.0
Q ss_pred ccccccccCCccccCCCCCCC
Q psy14210 99 ELLHPVYTGGERCGPFSQSST 119 (312)
Q Consensus 99 ~~~~~~~~dgVv~~~~~~~~~ 119 (312)
.++|++++|||++++|++.+.
T Consensus 3 t~igi~~~dgVvlaad~r~~~ 23 (193)
T cd03758 3 TLIGIKGKDFVILAADTSAAR 23 (193)
T ss_pred eEEEEEeCCEEEEEEcCcccc
Confidence 478999999999999987643
No 85
>cd03764 proteasome_beta_archeal Archeal proteasome, beta subunit. The 20S proteasome, multisubunit proteolytic complex, is the central enzyme for non-lysosomal protein degradation in both the cytosol and the nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are both members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis. Mammals have 7 alpha and 7 beta proteasome subunits while archaea have one of each.
Probab=43.88 E-value=8.3 Score=33.53 Aligned_cols=21 Identities=14% Similarity=0.023 Sum_probs=18.1
Q ss_pred ccccccccCCccccCCCCCCC
Q psy14210 99 ELLHPVYTGGERCGPFSQSST 119 (312)
Q Consensus 99 ~~~~~~~~dgVv~~~~~~~~~ 119 (312)
+++|++++|||++++|++.+.
T Consensus 2 t~iai~~~dgvvia~d~r~~~ 22 (188)
T cd03764 2 TTVGIVCKDGVVLAADKRASM 22 (188)
T ss_pred cEEEEEeCCEEEEEEcccccc
Confidence 579999999999999987554
No 86
>cd01913 protease_HslV Protease HslV and the ATPase/chaperone HslU are part of an ATP-dependent proteolytic system that is the prokaryotic homolog of the proteasome. HslV is a dimer of hexamers (a dodecamer) that forms a central proteolytic chamber with active sites on the interior walls of the cavity. HslV shares significant sequence and structural similarity with the proteasomal beta-subunit and both are members of the Ntn-family of hydrolases. HslV has a nucleophilic threonine residue at its N-terminus that is exposed after processing of the propeptide and is directly involved in active site catalysis.
Probab=42.98 E-value=8.2 Score=33.79 Aligned_cols=20 Identities=15% Similarity=-0.014 Sum_probs=17.4
Q ss_pred ccccccccCCccccCCCCCC
Q psy14210 99 ELLHPVYTGGERCGPFSQSS 118 (312)
Q Consensus 99 ~~~~~~~~dgVv~~~~~~~~ 118 (312)
.+++++++|||++|+|++.+
T Consensus 2 Tivgi~~~dgVvlaaD~r~t 21 (171)
T cd01913 2 TILAVRKNGKVVIAGDGQVT 21 (171)
T ss_pred eEEEEEECCEEEEEECCceE
Confidence 47899999999999998743
No 87
>cd06404 PB1_aPKC PB1 domain is an essential modular domain of the atypical protein kinase C (aPKC) which in complex with Par6 and Par3 proteins is crucial for establishment of apical-basal polarity of animal cells. PB1 domain is a modular domain mediating specific protein-protein interaction which play roles in many critical cell processes. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domains, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-interactions. The PB1 domain module is conserved in amoebas, fungi,
Probab=40.99 E-value=1.3e+02 Score=23.24 Aligned_cols=51 Identities=16% Similarity=0.152 Sum_probs=37.7
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHHhcCcCCCcEEEEEEECCC--eEEeChhHHHHHHHHH
Q psy14210 246 YRPDLSEEEAYALATSAIYHACRRDIHSGGCVRLYKINGQG--WQQVLSRDVKDIYNDR 302 (312)
Q Consensus 246 y~~~ms~eEAi~la~kaL~~a~~rD~~sg~~ieI~iItk~G--~~~l~~~eI~~~l~~~ 302 (312)
..+.+|.|+..+-+++.... ....++.|.+++.+| +.+-+.+|+++-+.=+
T Consensus 16 ~d~~~s~e~L~~~v~~~c~~------~~~q~ft~kw~DEEGDp~tiSS~~EL~EA~rl~ 68 (83)
T cd06404 16 IDPSISLEELCNEVRDMCRF------HNDQPFTLKWIDEEGDPCTISSQMELEEAFRLY 68 (83)
T ss_pred cCCCcCHHHHHHHHHHHhCC------CCCCcEEEEEECCCCCceeecCHHHHHHHHHHH
Confidence 34567777777666555433 245689999999976 8999999999887644
No 88
>PF00227 Proteasome: Proteasome subunit; InterPro: IPR001353 ATP-dependent protease complexes are present in all three kingdoms of life, where they rid the cell of misfolded or damaged proteins and control the level of certain regulatory proteins. They include the proteasome in Eukaryotes, Archaea, and Actinomycetales and the HslVU (ClpQY, clpXP) complex in other eubacteria. Genes homologous to eubacterial HslV (ClpQ) and HslU (ClpY, clpX) have also been demonstrated in to be present in the genome of trypanosomatid protozoa []. The proteasome (or macropain) (3.4.25.1 from EC) [, , , , ] is a eukaryotic and archaeal multicatalytic proteinase complex that seems to be involved in an ATP/ubiquitin-dependent nonlysosomal proteolytic pathway. In eukaryotes the proteasome is composed of about 28 distinct subunits which form a highly ordered ring-shaped structure (20S ring) of about 700 kDa. Most proteasome subunits can be classified, on the basis on sequence similarities into two groups, alpha (A) and beta (B). The prokaryotic ATP-dependent proteasome is coded for by the heat-shock locus VU (HslVU). It consists of HslV, the protease (MEROPS peptidase subfamily T1B), and HslU, IPR004491 from INTERPRO, the ATPase and chaperone belonging to the AAA/Clp/Hsp100 family. The crystal structure of Thermotoga maritima HslV has been determined to 2.1-A resolution. The structure of the dodecameric enzyme is well conserved compared to those from Escherichia coli and Haemophilus influenzae [, ]. This entry contains threonine peptidases and non-peptidase homologs belong to MEROPS peptidase family T1 (proteasome family, clan PB(T)). The family consists of the protease components of the archaeal and bacterial proteasomes and the alpha and beta subunits of the eukaryotic proteasome. ; GO: 0004298 threonine-type endopeptidase activity, 0051603 proteolysis involved in cellular protein catabolic process, 0005839 proteasome core complex; PDB: 3KRD_1 3H6F_M 2FHH_F 3HF9_F 2FHG_D 3HFA_B 3H6I_K 3MI0_A 3MFE_1 3MKA_F ....
Probab=40.15 E-value=6.9 Score=33.70 Aligned_cols=23 Identities=9% Similarity=-0.061 Sum_probs=18.8
Q ss_pred CccccccccccCCccccCCCCCC
Q psy14210 96 DSCELLHPVYTGGERCGPFSQSS 118 (312)
Q Consensus 96 ~~~~~~~~~~~dgVv~~~~~~~~ 118 (312)
.+.+++|++++|||++++|++.+
T Consensus 3 ~G~t~vgi~~~dgvvla~d~~~~ 25 (190)
T PF00227_consen 3 NGTTVVGIKGKDGVVLAADKRIS 25 (190)
T ss_dssp TSBEEEEEEESSEEEEEEEEEEE
T ss_pred CCeEEEEEEECCEEEEEEccccc
Confidence 35589999999999999996543
No 89
>TIGR03690 20S_bact_beta proteasome, beta subunit, bacterial type. Members of this family are the beta subunit of the 20S proteasome as found in Actinobacteria such as Mycobacterium, Rhodococcus, and Streptomyces. In Streptomyces, maturation during proteasome assembly was shown to remove a 53-amino acid propeptide. Most of the length of the propeptide is not included in this model.
Probab=39.78 E-value=11 Score=33.76 Aligned_cols=23 Identities=13% Similarity=0.229 Sum_probs=19.2
Q ss_pred ccccccccccCCccccCCCCCCC
Q psy14210 97 SCELLHPVYTGGERCGPFSQSST 119 (312)
Q Consensus 97 ~~~~~~~~~~dgVv~~~~~~~~~ 119 (312)
+..++|++++|||++++|++.+.
T Consensus 2 G~T~igi~~kdgVvlaad~r~~~ 24 (219)
T TIGR03690 2 GTTIVALTYPGGVLMAGDRRATQ 24 (219)
T ss_pred CcEEEEEEECCEEEEEECCcccc
Confidence 34689999999999999987553
No 90
>COG0148 Eno Enolase [Carbohydrate transport and metabolism]
Probab=39.47 E-value=62 Score=32.17 Aligned_cols=174 Identities=21% Similarity=0.212 Sum_probs=94.9
Q ss_pred EEEecCeEEEEEeCChhHHHHHHHHHHHHhhhhh--hhcCC------cc-CHHHHHHHHHHHHHHhccCCCCCCCCCCcc
Q psy14210 128 VIPVSSSILCTLAGNAADCVYWLHSLAKECKGYE--CKYRT------GM-TIRHAANLLVNMVRKYRTGNHSSKIPNGLS 198 (312)
Q Consensus 128 I~~I~d~i~~a~sG~~aD~q~l~~~lr~~~~~~~--~~~g~------~i-~v~~la~~ls~~l~~~~~~~~~~~rP~gls 198 (312)
|-.+++-|.=...|+-+--|..++.+-.++.--. -+.|- .+ ..+..|+.+.--+|+|..+.....-|..+
T Consensus 67 V~nVn~~Iap~LiG~da~dQ~~ID~~lielDGT~Nks~lGaNailgVSlAvAkAAA~~l~~PLy~YlGG~~a~~lPvPm- 145 (423)
T COG0148 67 VANVNEIIAPALIGLDATDQALIDSLLIELDGTENKSKLGANAILGVSLAVAKAAAASLGIPLYRYLGGLNALVLPVPM- 145 (423)
T ss_pred HHHHHHHHHHHHcCCCcccHHHHHHHHHHccCCCcccccccHHHHHHHHHHHHHHHHhcCCcHHHHhcCccccccccce-
Confidence 3345555666667777777777777765553211 11111 11 13344555556677777632223456554
Q ss_pred cceeeeEEecCCC--CeEEEEcCCceEEecCeeeEccCh-HHHHHHHHhh-----------CCCCCC-HHHHHHHHHHHH
Q psy14210 199 FGTLMAAYDEILG--PQLYMLDNTGLLIEGTKFCVGSGA-EYAQAILDTD-----------YRPDLS-EEEAYALATSAI 263 (312)
Q Consensus 199 ~~~IIaG~D~~~g--p~Ly~iDpsGs~~e~~~~AiGsGs-~~a~~~Le~~-----------y~~~ms-~eEAi~la~kaL 263 (312)
+.+|-+|-..++. .|-|++-|.|.-.-..+.=.|.-- ...+.+|.+. |-|+++ .+||++++.+|+
T Consensus 146 ~NvinGG~HA~n~~d~QEFmI~p~ga~sf~ealr~~~ev~h~lk~~l~~~g~~t~vGDEGgfAP~l~~~eeald~i~~Ai 225 (423)
T COG0148 146 MNVINGGAHADNNLDIQEFMIMPVGAESFKEALRAGAEVFHHLKKLLKEKGLSTGVGDEGGFAPNLKSNEEALDILVEAI 225 (423)
T ss_pred eeeecccccCCCCccceeEEEeecChHHHHHHHHHHHHHHHHHHHHHhhcCccccccCCcccCCCCCccHHHHHHHHHHH
Confidence 3456666644232 488999999966544443334321 1234555543 557775 899999999999
Q ss_pred HHHHHhcCcCCCcEEEEE------EECCCe-----EEeChhHHHHHHHHHhcC
Q psy14210 264 YHACRRDIHSGGCVRLYK------INGQGW-----QQVLSRDVKDIYNDRKEA 305 (312)
Q Consensus 264 ~~a~~rD~~sg~~ieI~i------Itk~G~-----~~l~~~eI~~~l~~~~~~ 305 (312)
+.+-+.. +..|-+++ +-++|. +.++++|.-+++.++.++
T Consensus 226 e~agy~~---g~~i~~alD~Aasefy~~~~Y~~~~~~~~~~e~i~~~~~Lv~~ 275 (423)
T COG0148 226 EEAGYEP---GEDIALALDVAASEFYKDGKYVLEGESLTSEELIEYYLELVKK 275 (423)
T ss_pred HHhCCCC---CcceeeeehhhhhhhccCCeeeecCcccCHHHHHHHHHHHHHh
Confidence 9875431 11222221 011221 146777777777766544
No 91
>PTZ00488 Proteasome subunit beta type-5; Provisional
Probab=39.21 E-value=11 Score=34.64 Aligned_cols=22 Identities=23% Similarity=0.160 Sum_probs=18.5
Q ss_pred ccccccccccCCccccCCCCCC
Q psy14210 97 SCELLHPVYTGGERCGPFSQSS 118 (312)
Q Consensus 97 ~~~~~~~~~~dgVv~~~~~~~~ 118 (312)
+..++|++++||||+|+|++.+
T Consensus 39 G~T~IgIk~kdgVvlAaD~r~~ 60 (247)
T PTZ00488 39 GTTTLAFKYGGGIIIAVDSKAT 60 (247)
T ss_pred CceEEEEEeCCEEEEEEecCcc
Confidence 4457999999999999998644
No 92
>PF03928 DUF336: Domain of unknown function (DUF336); InterPro: IPR005624 This entry contains uncharacterised proteins, including GlcG P45504 from SWISSPROT. The alignment contains many conserved motifs that are suggestive of cofactor binding and enzymatic activity.; PDB: 2A2L_D 3FPW_A 3FPV_E.
Probab=37.39 E-value=58 Score=26.70 Aligned_cols=36 Identities=28% Similarity=0.396 Sum_probs=26.7
Q ss_pred CCCCHHHHHHHHHHHHHHHHHhcCcCCCcEEEEEEECCCe
Q psy14210 248 PDLSEEEAYALATSAIYHACRRDIHSGGCVRLYKINGQGW 287 (312)
Q Consensus 248 ~~ms~eEAi~la~kaL~~a~~rD~~sg~~ieI~iItk~G~ 287 (312)
|.+|+++|.+++..+++.+.++. .++-|+|++..|.
T Consensus 1 p~l~~~~A~~l~~~a~~~a~~~g----~~v~iaVvd~~G~ 36 (132)
T PF03928_consen 1 PSLTLEDAWKLGDAAVEEARERG----LPVSIAVVDAGGH 36 (132)
T ss_dssp EEE-HHHHHHHHHHHHHHHHHTT-------EEEEEETTS-
T ss_pred CCcCHHHHHHHHHHHHHHHHHhC----CCeEEEEEECCCC
Confidence 35789999999999999998643 4588999999883
No 93
>COG3193 GlcG Uncharacterized protein, possibly involved in utilization of glycolate and propanediol [General function prediction only]
Probab=32.42 E-value=1.1e+02 Score=25.99 Aligned_cols=36 Identities=28% Similarity=0.294 Sum_probs=31.1
Q ss_pred CCCCCHHHHHHHHHHHHHHHHHhcCcCCCcEEEEEEECCC
Q psy14210 247 RPDLSEEEAYALATSAIYHACRRDIHSGGCVRLYKINGQG 286 (312)
Q Consensus 247 ~~~ms~eEAi~la~kaL~~a~~rD~~sg~~ieI~iItk~G 286 (312)
.+.+|+|+|.+++..++.++.+. +.++.+.++|..|
T Consensus 5 ~~~Ls~e~a~~ii~aA~a~a~~~----g~~VtvaVVD~~G 40 (141)
T COG3193 5 KPVLSLELANKIIAAAVAEAQQL----GVPVTVAVVDAGG 40 (141)
T ss_pred ccccCHHHHHHHHHHHHHHHHHh----CCceEEEEECCCC
Confidence 46799999999999999988642 6899999999987
No 94
>PRK09732 hypothetical protein; Provisional
Probab=31.23 E-value=1.2e+02 Score=25.44 Aligned_cols=35 Identities=20% Similarity=0.132 Sum_probs=30.5
Q ss_pred CCCCHHHHHHHHHHHHHHHHHhcCcCCCcEEEEEEECCC
Q psy14210 248 PDLSEEEAYALATSAIYHACRRDIHSGGCVRLYKINGQG 286 (312)
Q Consensus 248 ~~ms~eEAi~la~kaL~~a~~rD~~sg~~ieI~iItk~G 286 (312)
+.||++.|.+++..++..+.+. +.++.|+++|..|
T Consensus 5 ~~Ltl~~A~~~~~aA~~~A~~~----g~~v~iaVvD~~G 39 (134)
T PRK09732 5 VILSQQMASAIIAAGQEEAQKN----NWSVSIAVADDGG 39 (134)
T ss_pred ccCCHHHHHHHHHHHHHHHHHh----CCCEEEEEEcCCC
Confidence 5699999999999999998753 4689999999987
No 95
>COG4831 Roadblock/LC7 domain [Function unknown]
Probab=31.18 E-value=2.4e+02 Score=22.50 Aligned_cols=58 Identities=17% Similarity=0.252 Sum_probs=39.7
Q ss_pred CCCCCHHHHHHHHHHHHHHHHHh-------------c-------CcCCCcEEEEEEECCC-eEEeChhHHHHHHHHHhc
Q psy14210 247 RPDLSEEEAYALATSAIYHACRR-------------D-------IHSGGCVRLYKINGQG-WQQVLSRDVKDIYNDRKE 304 (312)
Q Consensus 247 ~~~ms~eEAi~la~kaL~~a~~r-------------D-------~~sg~~ieI~iItk~G-~~~l~~~eI~~~l~~~~~ 304 (312)
+.+|+.+.|.-.|.-|-..-+-- + ..+++.+-+++...-| |..+++.+++++++.+.+
T Consensus 30 kgdm~k~~A~maAkmcaAnnmM~~~qA~~~t~~sg~~w~P~~gwa~agg~yavci~Gn~GVFVe~~kadf~kIfk~L~~ 108 (109)
T COG4831 30 KGDMPKEMAEMAAKMCAANNMMGDMQASGYTALSGMNWTPQNGWAVAGGKYAVCIMGNVGVFVELDKADFNKIFKTLRE 108 (109)
T ss_pred eCCCCHHHHHHHHHHHHHHHHHHHHhhhhhhhhhcCccccccceEEecCceEEEEecceeEEEEcchhhHHHHHHHHhc
Confidence 44788888877766554321111 1 2356677888888777 577899999999988754
No 96
>PF07499 RuvA_C: RuvA, C-terminal domain; InterPro: IPR011114 In prokaryotes, RuvA, RuvB, and RuvC process the universal DNA intermediate of homologous recombination, termed Holliday junction. The tetrameric DNA helicase RuvA specifically binds to the Holliday junction and facilitates the isomerization of the junction from the stacked folded configuration to the square-planar structure []. In the RuvA tetramer, each subunit consists of three domains, I, II and III, where I and II form the major core that is responsible for Holliday junction binding and base pair rearrangements of Holliday junction executed at the crossover point, whereas domain III regulates branch migration through direct contact with RuvB. The domain represents the C-terminal domain III of RuvA. This domain plays a significant role in the ATP-dependent branch migration of the hetero-duplex through direct contact with RuvB []. Within the Holliday junction, this domain makes no interaction with the DNA.; GO: 0005524 ATP binding, 0009378 four-way junction helicase activity, 0006281 DNA repair, 0006310 DNA recombination, 0009379 Holliday junction helicase complex; PDB: 1HJP_A 1CUK_A 1C7Y_A 1IXS_A 1IXR_B 1BVS_E 2ZTC_A 2ZTD_B 2H5X_A.
Probab=27.72 E-value=38 Score=22.84 Aligned_cols=33 Identities=21% Similarity=0.217 Sum_probs=23.6
Q ss_pred eEccChHHHHHHHHhhC-CCCCCHHHHHHHHHHH
Q psy14210 230 CVGSGAEYAQAILDTDY-RPDLSEEEAYALATSA 262 (312)
Q Consensus 230 AiGsGs~~a~~~Le~~y-~~~ms~eEAi~la~ka 262 (312)
+.|+....+...+++.. .++++.+|.++.+++.
T Consensus 12 ~LGy~~~e~~~av~~~~~~~~~~~e~~ik~aLk~ 45 (47)
T PF07499_consen 12 SLGYSKAEAQKAVSKLLEKPGMDVEELIKQALKL 45 (47)
T ss_dssp HTTS-HHHHHHHHHHHHHSTTS-HHHHHHHHHCC
T ss_pred HcCCCHHHHHHHHHHhhcCCCCCHHHHHHHHHhh
Confidence 34777778888887776 8899999988777653
No 97
>KOG2947|consensus
Probab=26.49 E-value=2.1e+02 Score=26.96 Aligned_cols=59 Identities=15% Similarity=0.178 Sum_probs=40.4
Q ss_pred eeeEEecCCCCeEEEEcCCceEEecCe-------eeEccChHHHHHHHHhhCCCCCCHHHHHHHHHHHH
Q psy14210 202 LMAAYDEILGPQLYMLDNTGLLIEGTK-------FCVGSGAEYAQAILDTDYRPDLSEEEAYALATSAI 263 (312)
Q Consensus 202 IIaG~D~~~gp~Ly~iDpsGs~~e~~~-------~AiGsGs~~a~~~Le~~y~~~ms~eEAi~la~kaL 263 (312)
+|.-|-..+. -..++.|++++..+ -..|.|..|.-+++-...+..+++.||++.+-++-
T Consensus 224 ~I~~w~~eGA---~~l~adg~yfev~a~~ppkvVD~lg~~DtF~A~vIyA~lk~~r~l~eAvdfg~rva 289 (308)
T KOG2947|consen 224 LICPWASEGA---GALGADGKYFEVDAFKPPKVVDTLGAGDTFNAGVIYALLKQGRSLAEAVDFGNRVA 289 (308)
T ss_pred EEeccccccc---cccCCCCCEEecCCCCCccceeeccCCCcchHHHHHHHHHhhhhHHHHHHHHHHhh
Confidence 6777765332 24578888887732 24577766666666666667899999999987653
No 98
>KOG0463|consensus
Probab=26.19 E-value=44 Score=33.28 Aligned_cols=51 Identities=27% Similarity=0.414 Sum_probs=35.2
Q ss_pred cccCceEEE-EEcCCeEEEEEcCCccCCcccccccccccccccCCCcccccCccccCCcccCCCcc
Q psy14210 2 FITGTTTLG-FRYPEGIILATDSRATANDLIVSQKLNKFCQSSLGDSCELLHPVYTGGERCGQSYS 66 (312)
Q Consensus 2 ~~~g~t~~~-~~~~~gv~~~~d~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 66 (312)
+..||+.-| |+..|..+|+-|+.... --|.-+++.| ++|-+|-.||||.+|
T Consensus 384 vvSGT~L~GtIrLND~LlLGPd~~G~F-~pI~iKSIHR-------------KRMpV~~VrcGQtAS 435 (641)
T KOG0463|consen 384 VVSGTLLSGTIRLNDILLLGPDSNGDF-MPIPIKSIHR-------------KRMPVGIVRCGQTAS 435 (641)
T ss_pred EeecceeeeeEEeccEEEecCCCCCCe-eeeehhhhhh-------------ccccceEEeccchhh
Confidence 345666666 79999999998876444 2233344444 456677799999997
No 99
>PF00564 PB1: PB1 domain; InterPro: IPR000270 The Phox and Bem1p domain, is present in many eukaryotic cytoplasmic signalling proteins. The domain adopts a beta-grasp fold, similar to that found in ubiquitin and Ras-binding domains. A motif, variously termed OPR, PC and AID, represents the most conserved region of the majority of PB1 domains, and is necessary for PB1 domain function. This function is the formation of PB1 domain heterodimers, although not all PB1 domain pairs associate.; GO: 0005515 protein binding; PDB: 1IPG_A 1IP9_A 2KFK_A 1WMH_A 1VD2_A 1WI0_A 1OEY_C 1PQS_A 1Q1O_A 1TZ1_A ....
Probab=25.76 E-value=2.2e+02 Score=20.73 Aligned_cols=51 Identities=14% Similarity=0.102 Sum_probs=37.3
Q ss_pred CCCCHHHHHHHHHHHHHHHHHhcCcCCCcEEEEEEECCC--eEEeChhHHHHHHHHHhcC
Q psy14210 248 PDLSEEEAYALATSAIYHACRRDIHSGGCVRLYKINGQG--WQQVLSRDVKDIYNDRKEA 305 (312)
Q Consensus 248 ~~ms~eEAi~la~kaL~~a~~rD~~sg~~ieI~iItk~G--~~~l~~~eI~~~l~~~~~~ 305 (312)
.++|.++....+.+.+... ...+.+.+.+.+| +.+.+.+|+...+....+.
T Consensus 20 ~~~s~~~L~~~i~~~~~~~-------~~~~~l~Y~D~dgD~V~i~sd~Dl~~a~~~~~~~ 72 (84)
T PF00564_consen 20 SDVSFDDLRSKIREKFGLL-------DEDFQLKYKDEDGDLVTISSDEDLQEAIEQAKES 72 (84)
T ss_dssp STSHHHHHHHHHHHHHTTS-------TSSEEEEEEETTSSEEEESSHHHHHHHHHHHHHC
T ss_pred CCCCHHHHHHHHHHHhCCC-------CccEEEEeeCCCCCEEEeCCHHHHHHHHHHHHhc
Confidence 4556666666655554322 5789999999988 6777999999999877653
No 100
>cd01901 Ntn_hydrolase The Ntn hydrolases (N-terminal nucleophile) are a diverse superfamily of of enzymes that are activated autocatalytically via an N-terminally lcated nucleophilic amino acid. N-terminal nucleophile (NTN-) hydrolase superfamily, which contains a four-layered alpha, beta, beta, alpha core structure. This family of hydrolases includes penicillin acylase, the 20S proteasome alpha and beta subunits, and glutamate synthase. The mechanism of activation of these proteins is conserved, although they differ in their substrate specificities. All known members catalyze the hydrolysis of amide bonds in either proteins or small molecules, and each one of them is synthesized as a preprotein. For each, an autocatalytic endoproteolytic process generates a new N-terminal residue. This mature N-terminal residue is central to catalysis and acts as both a polarizing base and a nucleophile during the reaction. The N-terminal amino group acts as the proton acceptor and activates either t
Probab=25.41 E-value=31 Score=27.90 Aligned_cols=23 Identities=13% Similarity=-0.074 Sum_probs=19.1
Q ss_pred cccccccccCCccccCCCCCCCC
Q psy14210 98 CELLHPVYTGGERCGPFSQSSTV 120 (312)
Q Consensus 98 ~~~~~~~~~dgVv~~~~~~~~~~ 120 (312)
|.+++++++|+|++++|++-..-
T Consensus 1 ~t~i~i~~~~gvila~d~~~~~~ 23 (164)
T cd01901 1 STSVAIKGKGGVVLAADKRLSSG 23 (164)
T ss_pred CcEEEEEeCCEEEEEEecccCcc
Confidence 46899999999999999875543
No 101
>COG0822 IscU NifU homolog involved in Fe-S cluster formation [Energy production and conversion]
Probab=25.40 E-value=2.9e+02 Score=23.53 Aligned_cols=94 Identities=15% Similarity=0.112 Sum_probs=59.0
Q ss_pred eEE-EEcCCceEEecCeeeEccChHHHHHHHHhhCCCCCCHHHHHHHHHHHHHHHHHhcCcCCCcEE-EEE-----EECC
Q psy14210 213 QLY-MLDNTGLLIEGTKFCVGSGAEYAQAILDTDYRPDLSEEEAYALATSAIYHACRRDIHSGGCVR-LYK-----INGQ 285 (312)
Q Consensus 213 ~Ly-~iDpsGs~~e~~~~AiGsGs~~a~~~Le~~y~~~ms~eEAi~la~kaL~~a~~rD~~sg~~ie-I~i-----Itk~ 285 (312)
.|| .+| .|......|-..|.+...+-+-+-..+-.+.|.+||+++.......+........+.+. +.. ..+.
T Consensus 44 ~l~lkv~-~~~I~d~~F~~~GC~is~ASss~~te~v~Gkti~EAl~i~~~~~~m~~~~~~~~~~~l~d~~~l~~v~~~p~ 122 (150)
T COG0822 44 TLYLKVD-NGVIEDAKFKGFGCAISIASSSMMTELVKGKTLDEALKITEAFTDMAKELGGDPDDRLGDLVALAGVALPPA 122 (150)
T ss_pred EEEEEEc-CCEEEEEEeeecCcHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHcCCCccchhhhhHhhhhhccccc
Confidence 344 355 77777778889998888887777777788999999999984444444322211111111 000 1122
Q ss_pred C--eEEeChhHHHHHHHHHhcCCC
Q psy14210 286 G--WQQVLSRDVKDIYNDRKEAPP 307 (312)
Q Consensus 286 G--~~~l~~~eI~~~l~~~~~~~~ 307 (312)
+ ...+..+-++.-+++++..++
T Consensus 123 r~~C~~L~~~al~~ai~~~~~~~~ 146 (150)
T COG0822 123 RIKCSLLAWDALKAAIKDYKGKAE 146 (150)
T ss_pred cccchhccHHHHHHHHHHhhcccc
Confidence 2 345788888888888876654
No 102
>PRK02260 S-ribosylhomocysteinase; Provisional
Probab=23.28 E-value=4.5e+02 Score=22.76 Aligned_cols=77 Identities=18% Similarity=0.153 Sum_probs=46.9
Q ss_pred HHHHHHHHHHHHHHhccCCCCCCCCCCcccceeeeEEecCCCCeEEEEcCCceEEecCeeeEc-cChHHHHHHHHhhCC-
Q psy14210 170 IRHAANLLVNMVRKYRTGNHSSKIPNGLSFGTLMAAYDEILGPQLYMLDNTGLLIEGTKFCVG-SGAEYAQAILDTDYR- 247 (312)
Q Consensus 170 v~~la~~ls~~l~~~~~~~~~~~rP~gls~~~IIaG~D~~~gp~Ly~iDpsGs~~e~~~~AiG-sGs~~a~~~Le~~y~- 247 (312)
+.++=+.++.+++++.. .+-.+..+.|.|..........| ..+.-+..++++-++
T Consensus 53 lHTlEHL~At~lRn~~~-----------------------~~~~iI~~sPMGCrTGFYli~~g~~~~~~i~~l~~~~l~~ 109 (158)
T PRK02260 53 IHTLEHLLAGFLRNHLD-----------------------GGVEIIDISPMGCRTGFYLILIGTPDEEDVADALKATLED 109 (158)
T ss_pred hhHHHHHHHHHHhhCcc-----------------------CCceEEEECCCccccccEEEEeCCCCHHHHHHHHHHHHHH
Confidence 45556677777776554 12345556677777665555566 445555555444321
Q ss_pred -------------------CCCCHHHHHHHHHHHHHHHHHh
Q psy14210 248 -------------------PDLSEEEAYALATSAIYHACRR 269 (312)
Q Consensus 248 -------------------~~ms~eEAi~la~kaL~~a~~r 269 (312)
.++|++.|.+.|++.|......
T Consensus 110 i~~~~~eVPga~~~~CGny~~hsL~~Ak~~a~~~L~~~~~~ 150 (158)
T PRK02260 110 VLDDQEEVPGANEYQCGNYKDHSLEGAKEIARKILDQGISV 150 (158)
T ss_pred HHhhcCCCCCCChhcCCChhhCCHHHHHHHHHHHHHhhccc
Confidence 3578888888888888766543
No 103
>cd06402 PB1_p62 The PB1 domain is an essential part of p62 scaffold protein (alias sequestosome 1,SQSTM) involved in cell signaling, receptor internalization, and protein turnover. The PB1 domain is a modular domain mediating specific protein-protein interaction which play roles in many critical cell processes. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domains, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-interactions. The PB1 domain module is conserved in amoebas, fungi, animals, and plants.
Probab=22.65 E-value=2.9e+02 Score=21.43 Aligned_cols=49 Identities=10% Similarity=0.017 Sum_probs=35.1
Q ss_pred CCCHHHHHHHHHHHHHHHHHhcCcCCCcEEEEEEECCC--eEEeChhHHHHHHHHHh
Q psy14210 249 DLSEEEAYALATSAIYHACRRDIHSGGCVRLYKINGQG--WQQVLSRDVKDIYNDRK 303 (312)
Q Consensus 249 ~ms~eEAi~la~kaL~~a~~rD~~sg~~ieI~iItk~G--~~~l~~~eI~~~l~~~~ 303 (312)
..|.++..+.+.+.+.. ..+.++.|.+.+.+| +++-+.+|+...+....
T Consensus 26 ~~s~~~L~~~V~~~f~~------l~~~~ftlky~DeeGDlvtIssdeEL~~A~~~~~ 76 (87)
T cd06402 26 STSYEYLVEKVAAVFPS------LRGKNFQLFWKDEEGDLVAFSSDEELVMALGSLN 76 (87)
T ss_pred CcCHHHHHHHHHHHccc------cCCCcEEEEEECCCCCEEeecCHHHHHHHHHcCC
Confidence 34666666655554432 234799999999988 88899999998877654
No 104
>PF09894 DUF2121: Uncharacterized protein conserved in archaea (DUF2121); InterPro: IPR016754 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function. They do show distant similarity to NTPases and to nucleic acid binding enzymes.
Probab=22.35 E-value=67 Score=28.70 Aligned_cols=22 Identities=23% Similarity=0.403 Sum_probs=19.2
Q ss_pred ceEEEEEcCCeEEEEEcCCccC
Q psy14210 6 TTTLGFRYPEGIILATDSRATA 27 (312)
Q Consensus 6 ~t~~~~~~~~gv~~~~d~~~~~ 27 (312)
+-|+|+-.++|.|||.|+|.-.
T Consensus 2 SLII~y~GknGaViaGDkR~I~ 23 (194)
T PF09894_consen 2 SLIIAYYGKNGAVIAGDKRNIA 23 (194)
T ss_pred eEEEEEecCCCcEEeccceeee
Confidence 4689999999999999999654
No 105
>PF08269 Cache_2: Cache domain; InterPro: IPR013163 Cache is an extracellular domain that is predicted to have a role in small-molecule recognition in a wide range of proteins, including the animal dihydropyridine-sensitive voltage-gated Ca2+ channel; alpha-2delta subunit, and various bacterial chemotaxis receptors. The name Cache comes from CAlcium channels and CHEmotaxis receptors. This domain consists of an N-terminal part with three predicted strands and an alpha-helix, and a C-terminal part with a strand dyad followed by a relatively unstructured region. The N-terminal portion of the (unpermuted) Cache domain contains three predicted strands that could form a sheet analogous to that present in the core of the PAS domain structure. Cache domains are particularly widespread in bacteria, with Vibrio cholerae. The animal calcium channel alpha-2delta subunits might have acquired a part of their extracellular domains from a bacterial source []. The Cache domain appears to have arisen from the GAF-PAS fold despite their divergent functions []. This entry is composed of the type 2 Cache domain.; PDB: 2QHK_A 4EXO_A.
Probab=20.61 E-value=1.2e+02 Score=22.93 Aligned_cols=39 Identities=26% Similarity=0.139 Sum_probs=21.4
Q ss_pred CCCCHHHHHHHHHHHHHHHHHhcCcCCCcEEEEEEECCCeEEeC
Q psy14210 248 PDLSEEEAYALATSAIYHACRRDIHSGGCVRLYKINGQGWQQVL 291 (312)
Q Consensus 248 ~~ms~eEAi~la~kaL~~a~~rD~~sg~~ieI~iItk~G~~~l~ 291 (312)
..+|.+||.+.+++.|..... + +.=-+++++.+|+..+.
T Consensus 33 g~ls~eea~~~a~~~l~~~r~-~----~~gY~fi~d~~g~~l~h 71 (95)
T PF08269_consen 33 GKLSEEEAQQQAREALRALRY-G----GDGYFFIYDMDGVVLAH 71 (95)
T ss_dssp T-----TTHHHHHHHHHH--S-B----TTB--EEE-TTSBEEEE
T ss_pred CCccHHHHHHHHHHHHhcccc-C----CCCeEEEEeCCCeEEEc
Confidence 469999999999999987653 2 22357888989976653
No 106
>KOG1930|consensus
Probab=20.37 E-value=64 Score=32.26 Aligned_cols=68 Identities=24% Similarity=0.171 Sum_probs=39.4
Q ss_pred HhhCCCCCCHHHHHHHHHHHHHHHH-HhcCcCCC---cEEEEEEEC-CCeEEeChhHHHHHHHHHhcCCCCCC
Q psy14210 243 DTDYRPDLSEEEAYALATSAIYHAC-RRDIHSGG---CVRLYKING-QGWQQVLSRDVKDIYNDRKEAPPGGG 310 (312)
Q Consensus 243 e~~y~~~ms~eEAi~la~kaL~~a~-~rD~~sg~---~ieI~iItk-~G~~~l~~~eI~~~l~~~~~~~~~~~ 310 (312)
+-.||+++|.|+||++.++.=--++ -||..+.. .+-+.+-+. -++.-.+.++.++++..|=-|+.-+|
T Consensus 212 KyWYKP~isREQAIalLrdkePGtFvvRDS~SfrGayGLAlKVstPPPs~~~~~g~~~neLVRHFLIE~spkG 284 (483)
T KOG1930|consen 212 KYWYKPNISREQAIALLRDKEPGTFVVRDSHSFRGAYGLALKVSTPPPSVQPGDGSDSNELVRHFLIEPSPKG 284 (483)
T ss_pred ccccCCCCCHHHHHHHhhcCCCCeEEEecCCcCCCccceEEEeccCCCcccCCCCCchhhhhhhheeccCCCc
Confidence 3457899999999988655321111 24433221 133444443 34555567777899988766655444
Done!