Query psy14210
Match_columns 312
No_of_seqs 194 out of 1585
Neff 6.8
Searched_HMMs 29240
Date Fri Aug 16 22:16:30 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy14210.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/14210hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3h4p_a Proteasome subunit beta 100.0 9.8E-48 3.3E-52 345.8 23.5 207 5-308 1-208 (219)
2 1ryp_A 20S proteasome; multica 100.0 4.3E-47 1.5E-51 346.3 24.4 210 2-306 26-243 (243)
3 1iru_L 20S proteasome; cell cy 100.0 1.5E-46 5.2E-51 333.8 23.8 204 6-307 1-204 (204)
4 1yar_H Proteasome beta subunit 100.0 2.6E-46 9E-51 335.9 24.9 204 2-304 5-209 (217)
5 3nzj_K Proteasome component PR 100.0 1.6E-46 5.5E-51 350.8 22.8 208 2-306 72-279 (287)
6 1j2q_H Proteasome beta subunit 100.0 3.8E-46 1.3E-50 330.7 22.9 200 6-303 1-201 (202)
7 1iru_A 20S proteasome; cell cy 100.0 8.2E-46 2.8E-50 338.5 25.2 209 3-306 33-246 (246)
8 1iru_C 20S proteasome; cell cy 100.0 8.2E-46 2.8E-50 341.6 25.1 211 2-305 28-243 (261)
9 1ryp_L 20S proteasome; multica 100.0 6E-46 2E-50 332.0 23.3 202 6-304 1-202 (212)
10 1iru_B 20S proteasome; cell cy 100.0 4.2E-46 1.5E-50 337.6 22.3 205 2-302 28-232 (233)
11 1ryp_C 20S proteasome; multica 100.0 1.3E-45 4.3E-50 336.7 25.4 210 2-304 28-243 (244)
12 1yar_A Proteasome alpha subuni 100.0 8.3E-46 2.8E-50 335.7 22.6 202 2-299 31-233 (233)
13 1ryp_D 20S proteasome; multica 100.0 3.9E-45 1.3E-49 333.0 26.2 208 2-305 25-237 (241)
14 1ryp_E 20S proteasome; multica 100.0 1.3E-45 4.4E-50 336.2 22.5 210 2-306 23-239 (242)
15 1ryp_N 20S proteasome; multica 100.0 7.4E-46 2.5E-50 336.2 17.3 214 2-310 5-229 (233)
16 1q5q_H Proteasome beta-type su 100.0 9.1E-45 3.1E-49 329.7 23.8 204 6-303 1-218 (235)
17 1iru_D 20S proteasome; cell cy 100.0 3.9E-45 1.3E-49 334.6 20.9 209 2-307 26-237 (248)
18 1iru_G 20S proteasome; cell cy 100.0 8.4E-45 2.9E-49 333.6 22.1 208 2-303 30-240 (254)
19 1iru_N 20S proteasome; cell cy 100.0 2E-45 6.9E-50 330.1 17.2 209 2-307 5-216 (219)
20 1iru_F 20S proteasome; cell cy 100.0 4.2E-45 1.4E-49 337.4 19.7 210 2-308 29-242 (263)
21 1j2p_A Alpha-ring, proteasome 100.0 4E-44 1.4E-48 327.4 25.4 206 2-304 31-238 (246)
22 1iru_E 20S proteasome; cell cy 100.0 1.1E-44 3.8E-49 330.0 21.4 204 2-301 31-240 (241)
23 1q5r_H Proteasome beta-type su 100.0 2.7E-44 9.2E-49 336.8 23.7 211 2-306 62-286 (294)
24 3h4p_A Proteasome subunit alph 100.0 4.6E-45 1.6E-49 337.4 16.7 208 2-306 35-244 (264)
25 1ryp_G 20S proteasome; multica 100.0 6.5E-44 2.2E-48 325.9 24.1 207 2-303 27-239 (244)
26 1iru_H 20S proteasome; cell cy 100.0 1.4E-44 4.7E-49 321.4 18.8 202 6-307 1-204 (205)
27 1ryp_K 20S proteasome; multica 100.0 8.7E-44 3E-48 314.4 22.7 192 6-292 2-194 (198)
28 1ryp_B 20S proteasome; multica 100.0 1.1E-43 3.8E-48 325.2 23.6 205 2-301 28-249 (250)
29 1g0u_M Proteasome component PR 100.0 1.1E-44 3.9E-49 335.0 16.6 213 2-309 38-261 (266)
30 1iru_M 20S proteasome; cell cy 100.0 2.6E-43 8.9E-48 314.9 24.8 192 2-290 6-206 (213)
31 1ryp_F 20S proteasome; multica 100.0 4.3E-44 1.5E-48 324.6 17.7 200 2-299 28-233 (233)
32 3unf_H Proteasome subunit beta 100.0 2E-43 7E-48 321.0 21.7 194 6-298 1-194 (234)
33 1ryp_H 20S proteasome; multica 100.0 4.5E-43 1.5E-47 311.8 22.2 190 2-290 6-195 (205)
34 1ryp_M 20S proteasome; multica 100.0 8.5E-43 2.9E-47 314.1 24.0 192 2-290 6-215 (222)
35 1iru_J 20S proteasome; cell cy 100.0 1.4E-42 4.7E-47 308.5 24.9 192 1-289 4-197 (205)
36 2jay_A Proteasome; hydrolase; 100.0 2.1E-43 7.1E-48 330.4 20.2 211 2-306 54-278 (291)
37 3nzj_F Proteasome component C1 100.0 1E-42 3.6E-47 325.2 23.0 203 2-299 31-240 (288)
38 1iru_K 20S proteasome; cell cy 100.0 1.6E-42 5.3E-47 307.3 22.3 191 6-292 2-193 (201)
39 3unf_N Proteasome subunit beta 100.0 5.3E-43 1.8E-47 309.6 19.1 194 6-299 1-197 (199)
40 1ryp_J 20S proteasome; multica 100.0 6E-42 2E-46 304.2 24.0 190 2-289 5-196 (204)
41 3nzj_H Proteasome component PU 100.0 3.7E-42 1.3E-46 317.4 23.3 193 2-293 26-219 (261)
42 3mi0_A Proteasome subunit alph 100.0 5E-42 1.7E-46 314.4 23.4 169 128-303 53-238 (248)
43 1ryp_I 20S proteasome; multica 100.0 7E-42 2.4E-46 308.2 22.7 190 6-294 1-191 (222)
44 1iru_I 20S proteasome; cell cy 100.0 1.7E-41 5.7E-46 308.2 21.9 191 6-295 1-191 (234)
45 1q5q_A Proteasome alpha-type s 100.0 2.3E-41 7.7E-46 311.8 19.1 169 128-303 53-236 (259)
46 2z3b_A ATP-dependent protease 100.0 6.2E-35 2.1E-39 255.0 17.9 170 3-282 3-179 (180)
47 1g3k_A ATP-dependent protease 100.0 2.4E-34 8.2E-39 249.6 20.0 168 6-283 1-173 (174)
48 1m4y_A ATP-dependent protease 100.0 3.7E-34 1.3E-38 247.6 18.5 167 6-282 1-171 (171)
49 1ryp_D 20S proteasome; multica 83.8 0.18 6.1E-06 44.7 -0.5 36 67-121 17-52 (241)
50 1ryp_E 20S proteasome; multica 83.2 0.2 6.8E-06 44.4 -0.4 36 67-121 15-50 (242)
51 1ryp_F 20S proteasome; multica 82.6 0.23 7.8E-06 43.7 -0.3 36 67-121 20-55 (233)
52 1ryp_C 20S proteasome; multica 82.1 0.19 6.4E-06 44.6 -1.1 35 67-120 20-54 (244)
53 1iru_C 20S proteasome; cell cy 81.6 0.23 7.9E-06 44.6 -0.6 36 67-121 20-55 (261)
54 1ryp_A 20S proteasome; multica 81.5 0.29 9.8E-06 43.4 -0.1 34 67-119 18-52 (243)
55 1yar_A Proteasome alpha subuni 81.4 0.26 9E-06 43.3 -0.3 35 67-120 23-57 (233)
56 1iru_B 20S proteasome; cell cy 81.3 0.34 1.2E-05 42.5 0.4 34 67-119 20-53 (233)
57 1iru_E 20S proteasome; cell cy 80.6 0.22 7.6E-06 44.0 -1.1 36 67-121 23-58 (241)
58 3h4p_A Proteasome subunit alph 79.2 0.37 1.2E-05 43.5 -0.2 35 67-120 27-61 (264)
59 1iru_D 20S proteasome; cell cy 78.8 0.36 1.2E-05 42.9 -0.3 35 67-120 18-52 (248)
60 1ryp_B 20S proteasome; multica 78.3 0.39 1.3E-05 42.7 -0.3 34 67-119 20-53 (250)
61 1j2p_A Alpha-ring, proteasome 77.8 0.34 1.2E-05 43.0 -0.8 35 67-120 23-57 (246)
62 1iru_G 20S proteasome; cell cy 77.5 0.31 1.1E-05 43.5 -1.2 36 67-121 22-57 (254)
63 1iru_F 20S proteasome; cell cy 77.0 0.36 1.2E-05 43.4 -0.9 36 67-121 21-56 (263)
64 1iru_A 20S proteasome; cell cy 76.9 0.45 1.5E-05 42.2 -0.3 34 67-119 24-58 (246)
65 3nzj_F Proteasome component C1 76.6 0.23 8E-06 45.5 -2.3 36 67-121 23-58 (288)
66 1ryp_G 20S proteasome; multica 75.4 0.42 1.4E-05 42.4 -0.9 35 67-120 19-53 (244)
67 1q5q_A Proteasome alpha-type s 71.6 0.64 2.2E-05 41.7 -0.7 59 67-148 16-76 (259)
68 3mi0_A Proteasome subunit alph 54.5 1.7 6E-05 38.7 -1.2 80 99-182 29-112 (248)
69 1yar_H Proteasome beta subunit 48.6 3.7 0.00013 35.4 0.0 24 96-119 7-30 (217)
70 2z3b_A ATP-dependent protease 47.9 4.3 0.00015 34.0 0.3 23 97-119 5-27 (180)
71 1ryp_J 20S proteasome; multica 46.3 4.6 0.00016 34.2 0.3 26 95-120 6-31 (204)
72 1iru_J 20S proteasome; cell cy 44.6 5 0.00017 34.1 0.2 26 95-120 6-31 (205)
73 1ryp_M 20S proteasome; multica 43.6 6.1 0.00021 34.1 0.6 25 95-119 7-31 (222)
74 1m4y_A ATP-dependent protease 43.5 4.9 0.00017 33.2 -0.0 21 99-119 2-22 (171)
75 1g3k_A ATP-dependent protease 43.1 5 0.00017 33.3 -0.0 21 99-119 2-22 (174)
76 3unf_N Proteasome subunit beta 42.7 5.9 0.0002 33.4 0.4 21 99-119 2-22 (199)
77 1iru_M 20S proteasome; cell cy 41.5 5.9 0.0002 33.8 0.2 25 95-119 7-31 (213)
78 1ryp_H 20S proteasome; multica 41.3 6.2 0.00021 33.5 0.3 23 97-119 9-31 (205)
79 1g0u_M Proteasome component PR 39.9 5.6 0.00019 35.5 -0.2 30 88-119 34-63 (266)
80 1q5q_H Proteasome beta-type su 38.3 7.7 0.00026 33.8 0.4 20 99-118 2-21 (235)
81 1iru_I 20S proteasome; cell cy 38.3 4.1 0.00014 35.7 -1.4 21 99-119 2-22 (234)
82 1ryp_K 20S proteasome; multica 37.8 7 0.00024 32.9 0.1 21 99-119 3-23 (198)
83 2jay_A Proteasome; hydrolase; 37.4 6 0.0002 36.0 -0.5 24 96-119 56-79 (291)
84 1ryp_L 20S proteasome; multica 37.4 6.9 0.00024 33.4 -0.0 21 99-119 2-22 (212)
85 1iru_H 20S proteasome; cell cy 37.2 7 0.00024 33.1 -0.0 21 99-119 2-22 (205)
86 3h4p_a Proteasome subunit beta 37.0 8.1 0.00028 33.3 0.3 21 99-119 3-23 (219)
87 3nzj_K Proteasome component PR 35.8 7.8 0.00027 35.2 0.0 24 95-118 73-96 (287)
88 1q5r_H Proteasome beta-type su 35.3 10 0.00035 34.5 0.8 23 96-118 64-86 (294)
89 1iru_L 20S proteasome; cell cy 35.2 7.9 0.00027 32.8 -0.0 21 99-119 2-22 (204)
90 1iru_N 20S proteasome; cell cy 35.0 6.9 0.00024 33.6 -0.4 23 97-119 8-30 (219)
91 1j2q_H Proteasome beta subunit 35.0 7 0.00024 33.0 -0.4 21 99-119 2-22 (202)
92 1vd2_A Protein kinase C, IOTA 34.7 72 0.0025 23.7 5.3 50 247-302 23-74 (89)
93 1iru_K 20S proteasome; cell cy 34.5 7.3 0.00025 32.9 -0.4 21 99-119 3-23 (201)
94 3nzj_H Proteasome component PU 33.8 7.7 0.00026 34.7 -0.3 24 96-119 28-51 (261)
95 1ryp_I 20S proteasome; multica 33.8 8.6 0.00029 33.2 -0.0 21 99-119 2-22 (222)
96 1ryp_N 20S proteasome; multica 33.4 7.5 0.00026 33.8 -0.5 23 97-119 8-30 (233)
97 3unf_H Proteasome subunit beta 33.0 9.1 0.00031 33.5 0.0 21 99-119 2-22 (234)
98 3vxv_A Methyl-CPG-binding doma 24.1 1E+02 0.0034 21.8 4.2 30 273-302 22-51 (69)
99 3c2i_A Methyl-CPG-binding prot 23.9 93 0.0032 23.6 4.2 30 273-302 40-69 (97)
100 3fpw_A HBPS, extracellular HAE 22.4 1.5E+02 0.0052 25.2 5.8 36 247-286 62-97 (192)
101 2a2l_A Unknown; structural gen 20.6 86 0.0029 25.2 3.7 35 248-286 10-44 (145)
102 2kxe_A DNA polymerase II small 20.4 64 0.0022 22.9 2.4 25 236-260 20-45 (75)
No 1
>3h4p_a Proteasome subunit beta; core particle, cytoplasm, hydrolase, protease, threonine protease; 4.10A {Methanocaldococcus jannaschii}
Probab=100.00 E-value=9.8e-48 Score=345.77 Aligned_cols=207 Identities=29% Similarity=0.406 Sum_probs=195.1
Q ss_pred CceEEEEEcCCeEEEEEcCCccCCcccccccccccccccCCCcccccCccccCCcccCCCccccccccccccccccCCCC
Q psy14210 5 GTTTLGFRYPEGIILATDSRATANDLIVSQKLNKFCQSSLGDSCELLHPVYTGGERCGQSYSQRSHCVAETQQDHFLSPP 84 (312)
Q Consensus 5 g~t~~~~~~~~gv~~~~d~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (312)
|||+|||+++||||||+|+|+++|.++.++.++|
T Consensus 1 Gtt~vgi~~~dgVvlaaD~r~~~g~~i~~~~~~K---------------------------------------------- 34 (219)
T 3h4p_a 1 MTTTVGLICDDAVILATDKRASLGNLVADKEAKK---------------------------------------------- 34 (219)
T ss_dssp -CCEEEEEETTEEEEECCCCEEETTEEEETTCCC----------------------------------------------
T ss_pred CccEEEEEECCEEEEEEcCCcccCCEeeccccce----------------------------------------------
Confidence 8999999999999999999999999999999999
Q ss_pred CCCCccccccCCccccccccccCCccccCCCCCCCCCCCCcceEEEecCeEEEEEeCChhHHHHHHHHHHHHhhhhhhhc
Q psy14210 85 LSQSSQHIISGDSCELLHPVYTGGERCGPFSQSSTVPHNTSFQVIPVSSSILCTLAGNAADCVYWLHSLAKECKGYECKY 164 (312)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~dgVv~~~~~~~~~~~~~~~~KI~~I~d~i~~a~sG~~aD~q~l~~~lr~~~~~~~~~~ 164 (312)
||+|++|++|+++|+.+|++.+.++++.+++.|++++
T Consensus 35 -------------------------------------------I~~i~~~i~~~~aG~~aD~~~l~~~~~~~~~~~~~~~ 71 (219)
T 3h4p_a 35 -------------------------------------------LYKIDDYIAMTIAGSVGDAQAIVRLLIAEAKLYKMRT 71 (219)
T ss_dssp -------------------------------------------EEEEETTEEEECCSCHHHHHHHHHHHHHHHHHHHHHT
T ss_pred -------------------------------------------eEEecCCEEEEeeEcHHHHHHHHHHHHHHHHHHHHHc
Confidence 8999999999999999999999999999999999999
Q ss_pred CCccCHHHHHHHHHHHHHHhccCCCCCCCCCCcccceeeeEEecCCCCeEEEEcCCceEEecC-eeeEccChHHHHHHHH
Q psy14210 165 RTGMTIRHAANLLVNMVRKYRTGNHSSKIPNGLSFGTLMAAYDEILGPQLYMLDNTGLLIEGT-KFCVGSGAEYAQAILD 243 (312)
Q Consensus 165 g~~i~v~~la~~ls~~l~~~~~~~~~~~rP~gls~~~IIaG~D~~~gp~Ly~iDpsGs~~e~~-~~AiGsGs~~a~~~Le 243 (312)
+++++++.+++++++++|.++. |||+ +++||||||+.++|+||++||+|++++++ +.|+|+|+.+++++||
T Consensus 72 ~~~~~v~~la~~l~~~~~~~~~------~P~~--v~~lvaG~D~~~gp~Ly~idp~G~~~~~~~~~aiG~gs~~a~~~Le 143 (219)
T 3h4p_a 72 GRNIPPLACATLLSNILHSSRM------FPFL--TQIIIGGYDLLEGAKLFSLDPLGGMNEEKTFTATGSGSPIAYGVLE 143 (219)
T ss_dssp SSCCCHHHHHHHHHHHHHHTTT------TTCC--CCCEEEEEETTTEEEEEEECSSCCEEECSSEEEESTTHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHHhcC------CCce--EEEEEEEEeCCCCcEEEEECCCCceEecCCEEEEcCCHHHHHHHHH
Confidence 9999999999999999999865 8988 57899999986789999999999999999 9999999999999999
Q ss_pred hhCCCCCCHHHHHHHHHHHHHHHHHhcCcCCCcEEEEEEECCCeEEeChhHHHHHHHHHhcCCCC
Q psy14210 244 TDYRPDLSEEEAYALATSAIYHACRRDIHSGGCVRLYKINGQGWQQVLSRDVKDIYNDRKEAPPG 308 (312)
Q Consensus 244 ~~y~~~ms~eEAi~la~kaL~~a~~rD~~sg~~ieI~iItk~G~~~l~~~eI~~~l~~~~~~~~~ 308 (312)
+.|+++||+|||++++++||..+++||..++++++|++|+++|+++++++||++++..+++++..
T Consensus 144 ~~~~~~ms~eea~~la~~al~~~~~rd~~sg~~i~v~vi~~~g~~~l~~~ei~~~l~~~~~~~~~ 208 (219)
T 3h4p_a 144 AGYDRDMSVEEGIKLALNALKSAMERDTFSGNGISLAVITKDGVKIFEDEEIEKILDSMKAKPKK 208 (219)
T ss_dssp TSCCTTCCHHHHHHHHHHHHHHHHTSCSSCCSCCCEEEEETTEEEECCHHHHHHHHHHCC-----
T ss_pred HhcCCCCCHHHHHHHHHHHHHHHHhhcCCCCCcEEEEEEeCCCeEEcCHHHHHHHHHHhhccccc
Confidence 99999999999999999999999999999999999999999999999999999999999877753
No 2
>1ryp_A 20S proteasome; multicatalytic proteinase, protein degradation, antigen processing, hydrolase, protease; 1.90A {Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 1jd2_G* 1g65_G 1vsy_A 2f16_G* 2fak_G* 2fny_G* 2gpl_G* 3d29_G* 3dy3_G* 3dy4_G* 3e47_G* 3gpj_G* 3gpt_G* 3gpw_G* 3hye_G* 3l5q_A 3mg0_G* 3mg4_G* 3oeu_G* 3oev_G* ...
Probab=100.00 E-value=4.3e-47 Score=346.31 Aligned_cols=210 Identities=15% Similarity=0.203 Sum_probs=199.8
Q ss_pred ccc-CceEEEEEcCCeEEEEEcCCccCCcccccccccccccccCCCcccccCccccCCcccCCCcccccccccccccccc
Q psy14210 2 FIT-GTTTLGFRYPEGIILATDSRATANDLIVSQKLNKFCQSSLGDSCELLHPVYTGGERCGQSYSQRSHCVAETQQDHF 80 (312)
Q Consensus 2 ~~~-g~t~~~~~~~~gv~~~~d~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (312)
+.+ |||+|||+++||||||+|+|++ +.++.++.++|
T Consensus 26 v~~~Gtt~vgi~~~dgVvlaad~r~~-~~l~~~~~~~K------------------------------------------ 62 (243)
T 1ryp_A 26 TNQTNINSLAVRGKDCTVVISQKKVP-DKLLDPTTVSY------------------------------------------ 62 (243)
T ss_dssp TTTTCCCEEEEECSSEEEEEEECCCC-CTTBCGGGCCS------------------------------------------
T ss_pred HhcCCCcEEEEEeCCEEEEEEEecCC-ccccCCCcCCc------------------------------------------
Confidence 346 9999999999999999999999 79999988888
Q ss_pred CCCCCCCCccccccCCccccccccccCCccccCCCCCCCCCCCCcceEEEecCeEEEEEeCChhHHHHHHHHHHHHhhhh
Q psy14210 81 LSPPLSQSSQHIISGDSCELLHPVYTGGERCGPFSQSSTVPHNTSFQVIPVSSSILCTLAGNAADCVYWLHSLAKECKGY 160 (312)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~dgVv~~~~~~~~~~~~~~~~KI~~I~d~i~~a~sG~~aD~q~l~~~lr~~~~~~ 160 (312)
||+|++|++|+++|+.+|++.++++++.+++.|
T Consensus 63 -----------------------------------------------i~~i~~~i~~~~aG~~aD~~~l~~~~r~~~~~~ 95 (243)
T 1ryp_A 63 -----------------------------------------------IFCISRTIGMVVNGPIPDARNAALRAKAEAAEF 95 (243)
T ss_dssp -----------------------------------------------EEECSSSCEEEEESCHHHHHHHHHHHHHHHHHH
T ss_pred -----------------------------------------------eEEECCCEEEEEEecHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999
Q ss_pred hhhcCCccCHHHHHHHHHHHHHHhccCCCCCCCCCCcccceeeeEEecCCCCeEEEEcCCceEEecCeeeEccChHHHHH
Q psy14210 161 ECKYRTGMTIRHAANLLVNMVRKYRTGNHSSKIPNGLSFGTLMAAYDEILGPQLYMLDNTGLLIEGTKFCVGSGAEYAQA 240 (312)
Q Consensus 161 ~~~~g~~i~v~~la~~ls~~l~~~~~~~~~~~rP~gls~~~IIaG~D~~~gp~Ly~iDpsGs~~e~~~~AiGsGs~~a~~ 240 (312)
+++++++++++.+|+++++++|.|++ +++.|||+ +++||||||+.++|+||++||+|++.++++.|+|+|+.++++
T Consensus 96 ~~~~~~~~~v~~la~~l~~~l~~y~~--~~~~rP~~--v~~lvaG~D~~~gp~Ly~~dp~G~~~~~~~~a~G~gs~~a~~ 171 (243)
T 1ryp_A 96 RYKYGYDMPCDVLAKRMANLSQIYTQ--RAYMRPLG--VILTFVSVDEELGPSIYKTDPAGYYVGYKATATGPKQQEITT 171 (243)
T ss_dssp HHHHSSCCCHHHHHHHHHHHHHHHHH--BTTSCCCS--CEEEEEEEETTTEEEEEEECTTSCEEEBSEEEESTTHHHHHH
T ss_pred HHHHCCCCCHHHHHHHHHHHHHHHhc--cCCccccc--eEEEEEEEcCCCCcEEEEEcCCCCEEEEEEEEECCCcHHHHH
Confidence 99999999999999999999998888 77899998 568999999757899999999999999999999999999999
Q ss_pred HHHhhCCC-------CCCHHHHHHHHHHHHHHHHHhcCcCCCcEEEEEEECCCeEEeChhHHHHHHHHHhcCC
Q psy14210 241 ILDTDYRP-------DLSEEEAYALATSAIYHACRRDIHSGGCVRLYKINGQGWQQVLSRDVKDIYNDRKEAP 306 (312)
Q Consensus 241 ~Le~~y~~-------~ms~eEAi~la~kaL~~a~~rD~~sg~~ieI~iItk~G~~~l~~~eI~~~l~~~~~~~ 306 (312)
+||+.|++ +||+|||++++++||..+++|| .++++++|++|+++|+++++++||++++..+++++
T Consensus 172 ~Le~~~~~~~~~~~~~ms~eea~~l~~~al~~~~~rd-~s~~~iev~vi~~~g~~~l~~~ei~~~~~~~~~~~ 243 (243)
T 1ryp_A 172 NLENHFKKSKIDHINEESWEKVVEFAITHMIDALGTE-FSKNDLEVGVATKDKFFTLSAENIEERLVAIAEQD 243 (243)
T ss_dssp HHHHHHHHHCSSSCCCSSHHHHHHHHHHHHHHHHTCC-CCTTSEEEEEEETTEEEECCHHHHHHHHHHHTTTC
T ss_pred HHHHHhhhcccccccCCCHHHHHHHHHHHHHHHhccc-CCCCcEEEEEEECCCeEECCHHHHHHHHHHhhccC
Confidence 99999999 9999999999999999999999 78999999999999999999999999999997753
No 3
>1iru_L 20S proteasome; cell cycle, immune response, proteolysis, ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4 PDB: 3unb_K* 3une_K 3unf_K* 3unh_K
Probab=100.00 E-value=1.5e-46 Score=333.75 Aligned_cols=204 Identities=43% Similarity=0.750 Sum_probs=194.3
Q ss_pred ceEEEEEcCCeEEEEEcCCccCCcccccccccccccccCCCcccccCccccCCcccCCCccccccccccccccccCCCCC
Q psy14210 6 TTTLGFRYPEGIILATDSRATANDLIVSQKLNKFCQSSLGDSCELLHPVYTGGERCGQSYSQRSHCVAETQQDHFLSPPL 85 (312)
Q Consensus 6 ~t~~~~~~~~gv~~~~d~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (312)
||+|||+++||||||+|+|+++|.++.++..+|
T Consensus 1 tt~vgi~~~dgVvlaaD~r~~~g~~~~~~~~~K----------------------------------------------- 33 (204)
T 1iru_L 1 TTTLAFKFRHGVIVAADSRATAGAYIASQTVKK----------------------------------------------- 33 (204)
T ss_dssp CCEEEEEETTEEEEEECCCEEETTEEEESCCCC-----------------------------------------------
T ss_pred CeEEEEEeCCEEEEEEcCCcccCCEEEcCcccc-----------------------------------------------
Confidence 799999999999999999999999999999888
Q ss_pred CCCccccccCCccccccccccCCccccCCCCCCCCCCCCcceEEEecCeEEEEEeCChhHHHHHHHHHHHHhhhhhhhcC
Q psy14210 86 SQSSQHIISGDSCELLHPVYTGGERCGPFSQSSTVPHNTSFQVIPVSSSILCTLAGNAADCVYWLHSLAKECKGYECKYR 165 (312)
Q Consensus 86 ~~~~~~~~~~~~~~~~~~~~~dgVv~~~~~~~~~~~~~~~~KI~~I~d~i~~a~sG~~aD~q~l~~~lr~~~~~~~~~~g 165 (312)
|++|++|++|++||+.+|++.+.++++.+++.|+++++
T Consensus 34 ------------------------------------------i~~i~~~i~~~~aG~~aD~~~l~~~~~~~~~~~~~~~~ 71 (204)
T 1iru_L 34 ------------------------------------------VIEINPYLLGTMAGGAADCSFWERLLARQCRIYELRNK 71 (204)
T ss_dssp ------------------------------------------EEEEETTEEEECCBCHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred ------------------------------------------eEEcCCCEEEEccCcHHHHHHHHHHHHHHHHHHHHHHC
Confidence 99999999999999999999999999999999999999
Q ss_pred CccCHHHHHHHHHHHHHHhccCCCCCCCCCCcccceeeeEEecCCCCeEEEEcCCceEEecCeeeEccChHHHHHHHHhh
Q psy14210 166 TGMTIRHAANLLVNMVRKYRTGNHSSKIPNGLSFGTLMAAYDEILGPQLYMLDNTGLLIEGTKFCVGSGAEYAQAILDTD 245 (312)
Q Consensus 166 ~~i~v~~la~~ls~~l~~~~~~~~~~~rP~gls~~~IIaG~D~~~gp~Ly~iDpsGs~~e~~~~AiGsGs~~a~~~Le~~ 245 (312)
++++++.+++++++++|.+|+ +||+ +++||||||+ ++|+||.+||+|++.+++++|+|+|+.+++++||+.
T Consensus 72 ~~~~v~~la~~l~~~~~~~r~------~~~~--v~~lvaG~D~-~gp~Ly~idp~G~~~~~~~~aiG~gs~~a~~~Le~~ 142 (204)
T 1iru_L 72 ERISVAAASKLLANMVYQYKG------MGLS--MGTMICGWDK-RGPGLYYVDSEGNRISGATFSVGSGSVYAYGVMDRG 142 (204)
T ss_dssp SCCCHHHHHHHHHHHHHTTTT------SCCC--BEEEEEEECS-SSEEEEEEESSSCEEECSEEEESTTHHHHHHHHHTT
T ss_pred CCCCHHHHHHHHHHHHHHhCC------CCee--EEEEEEEEeC-CCCEEEEECCCCcEEEeCCEEEEcCHHHHHHHHhcc
Confidence 999999999999999999887 4655 6789999998 799999999999999999999999999999999999
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHHhcCcCCCcEEEEEEECCCeEEeChhHHHHHHHHHhcCCC
Q psy14210 246 YRPDLSEEEAYALATSAIYHACRRDIHSGGCVRLYKINGQGWQQVLSRDVKDIYNDRKEAPP 307 (312)
Q Consensus 246 y~~~ms~eEAi~la~kaL~~a~~rD~~sg~~ieI~iItk~G~~~l~~~eI~~~l~~~~~~~~ 307 (312)
|+++||+|||++++++||..+.+||..++++++|++|+++|+++++++|+++++.+++.+.|
T Consensus 143 ~~~~~s~eea~~l~~~al~~~~~rd~~s~~~i~v~vi~~~g~~~l~~~ei~~~~~~~~~~~~ 204 (204)
T 1iru_L 143 YSYDLEVEQAYDLARRAIYQATYRDAYSGGAVNLYHVREDGWIRVSSDNVADLHEKYSGSTP 204 (204)
T ss_dssp CCTTCCHHHHHHHHHHHHHHHHHHBTTCCSEEEEEEECSSCEEEEEEEEHHHHHHHHTC---
T ss_pred CCCCCCHHHHHHHHHHHHHHHHHhCccCCCceEEEEEeCCceEEeCHHHHHHHHHHhccCCC
Confidence 99999999999999999999999999899999999999999999999999999999988766
No 4
>1yar_H Proteasome beta subunit; proteasome 20S, PA26 proteasome activator 11S, hydrolase-HYD activator complex; 1.90A {Thermoplasma acidophilum} SCOP: d.153.1.4 PDB: 1ya7_H 1yau_H 3ipm_H 1pma_B 3jrm_H 3c92_H 3c91_H 3jse_H 3jtl_H
Probab=100.00 E-value=2.6e-46 Score=335.89 Aligned_cols=204 Identities=25% Similarity=0.408 Sum_probs=192.8
Q ss_pred cccCceEEEEEcCCeEEEEEcCCccCCcccccccccccccccCCCcccccCccccCCcccCCCccccccccccccccccC
Q psy14210 2 FITGTTTLGFRYPEGIILATDSRATANDLIVSQKLNKFCQSSLGDSCELLHPVYTGGERCGQSYSQRSHCVAETQQDHFL 81 (312)
Q Consensus 2 ~~~g~t~~~~~~~~gv~~~~d~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (312)
+.+|||+|||+++||||||+|+|+++|.++.+++++|
T Consensus 5 ~~~Gtt~vgi~~~dgVvlaaD~r~~~g~l~~~~~~~K------------------------------------------- 41 (217)
T 1yar_H 5 LETGTTTVGITLKDAVIMATERRVTMENFIMHKNGKK------------------------------------------- 41 (217)
T ss_dssp ----CCEEEEEETTEEEEEECCCEEETTEEEESCCCC-------------------------------------------
T ss_pred CCCCccEEEEEeCCEEEEEEcCCCCCCCEEecCccCC-------------------------------------------
Confidence 5689999999999999999999999999999999999
Q ss_pred CCCCCCCccccccCCccccccccccCCccccCCCCCCCCCCCCcceEEEecCeEEEEEeCChhHHHHHHHHHHHHhhhhh
Q psy14210 82 SPPLSQSSQHIISGDSCELLHPVYTGGERCGPFSQSSTVPHNTSFQVIPVSSSILCTLAGNAADCVYWLHSLAKECKGYE 161 (312)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~dgVv~~~~~~~~~~~~~~~~KI~~I~d~i~~a~sG~~aD~q~l~~~lr~~~~~~~ 161 (312)
|++|+++++|++||..+|++.+.++++.+++.|+
T Consensus 42 ----------------------------------------------i~~i~~~i~~~~aG~~aD~~~l~~~~~~~~~~~~ 75 (217)
T 1yar_H 42 ----------------------------------------------LFQIDTYTGMTIAGLVGDAQVLVRYMKAELELYR 75 (217)
T ss_dssp ----------------------------------------------EEEEETTEEEEEEECHHHHHHHHHHHHHHHHHHH
T ss_pred ----------------------------------------------eEEeCCCEEEEeCcCHHHHHHHHHHHHHHHHHHH
Confidence 8999999999999999999999999999999999
Q ss_pred hhcCCccCHHHHHHHHHHHHHHhccCCCCCCCCCCcccceeeeEEecCCCCeEEEEcCCceEEecCeeeEccChHHHHHH
Q psy14210 162 CKYRTGMTIRHAANLLVNMVRKYRTGNHSSKIPNGLSFGTLMAAYDEILGPQLYMLDNTGLLIEGTKFCVGSGAEYAQAI 241 (312)
Q Consensus 162 ~~~g~~i~v~~la~~ls~~l~~~~~~~~~~~rP~gls~~~IIaG~D~~~gp~Ly~iDpsGs~~e~~~~AiGsGs~~a~~~ 241 (312)
++++++++++.+++++++++|.++. |||+ +++|+|||| ++|+||.+||+|++.++++.|+|+|+.+++++
T Consensus 76 ~~~~~~~~v~~la~~l~~~~~~~r~------rp~~--v~~lvaG~D--~gp~Ly~idp~G~~~~~~~~aiGsgs~~a~~~ 145 (217)
T 1yar_H 76 LQRRVNMPIEAVATLLSNMLNQVKY------MPYM--VQLLVGGID--TAPHVFSIDAAGGSVEDIYASTGSGSPFVYGV 145 (217)
T ss_dssp HHHSSCCCHHHHHHHHHHHHHHTTT------SCCC--EEEEEEEES--SSEEEEEECTTCCEEEESEEEESTTHHHHHHH
T ss_pred HHHCCCCCHHHHHHHHHHHHHhcCC------CCce--EEEEEEEEC--CCCEEEEECCCCCeEecCEEEEcCCHHHHHHH
Confidence 9999999999999999999999764 8988 578999999 58999999999999999999999999999999
Q ss_pred HHhhCCCCCCHHHHHHHHHHHHHHHHHhcCcCCCcEEEEEEEC-CCeEEeChhHHHHHHHHHhc
Q psy14210 242 LDTDYRPDLSEEEAYALATSAIYHACRRDIHSGGCVRLYKING-QGWQQVLSRDVKDIYNDRKE 304 (312)
Q Consensus 242 Le~~y~~~ms~eEAi~la~kaL~~a~~rD~~sg~~ieI~iItk-~G~~~l~~~eI~~~l~~~~~ 304 (312)
||+.|+++||+|||++++++||..+.+||..++++++|++|++ +|+++++++|+++++..++.
T Consensus 146 Le~~~~~~~s~eea~~la~~al~~~~~rd~~s~~~i~v~vi~~~~g~~~~~~~ei~~~~~~~~~ 209 (217)
T 1yar_H 146 LESQYSEKMTVDEGVDLVIRAISAAKQRDSASGGMIDVAVITRKDGYVQLPTDQIESRIRKLGL 209 (217)
T ss_dssp HHHHCCTTCCHHHHHHHHHHHHHHHHHHCTTCCSCCEEEEEETTTEEEECCHHHHHHHHHHHTC
T ss_pred HHhhcccCCCHHHHHHHHHHHHHHHHhccCCCCCcEEEEEEECCCCEEEcCHHHHHHHHHHHHH
Confidence 9999999999999999999999999999998999999999999 89999999999999998753
No 5
>3nzj_K Proteasome component PRE2; ubiquitin, protein degradation, N-terminal nucleophilic HYDR 19S regulatory particle; HET: TY5 TRO MES; 2.40A {Saccharomyces cerevisiae} PDB: 3nzw_K* 3nzx_K* 4b4t_5
Probab=100.00 E-value=1.6e-46 Score=350.78 Aligned_cols=208 Identities=38% Similarity=0.680 Sum_probs=196.8
Q ss_pred cccCceEEEEEcCCeEEEEEcCCccCCcccccccccccccccCCCcccccCccccCCcccCCCccccccccccccccccC
Q psy14210 2 FITGTTTLGFRYPEGIILATDSRATANDLIVSQKLNKFCQSSLGDSCELLHPVYTGGERCGQSYSQRSHCVAETQQDHFL 81 (312)
Q Consensus 2 ~~~g~t~~~~~~~~gv~~~~d~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (312)
+.+|||+|||+++||||||+|+|+++|.++.++.++|
T Consensus 72 v~~GtT~vgik~~dGVVlAaD~r~t~G~li~~~~~~K------------------------------------------- 108 (287)
T 3nzj_K 72 IAHGTTTLAFRFQGGIIVAVDSRATAGNWVASQTVKK------------------------------------------- 108 (287)
T ss_dssp ----CCEEEEEETTEEEEEECCCEEETTEEEESCCCC-------------------------------------------
T ss_pred eccCceEEEEEECCEEEEEEccccccCceeecCCcce-------------------------------------------
Confidence 4689999999999999999999999999999999999
Q ss_pred CCCCCCCccccccCCccccccccccCCccccCCCCCCCCCCCCcceEEEecCeEEEEEeCChhHHHHHHHHHHHHhhhhh
Q psy14210 82 SPPLSQSSQHIISGDSCELLHPVYTGGERCGPFSQSSTVPHNTSFQVIPVSSSILCTLAGNAADCVYWLHSLAKECKGYE 161 (312)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~dgVv~~~~~~~~~~~~~~~~KI~~I~d~i~~a~sG~~aD~q~l~~~lr~~~~~~~ 161 (312)
|++|++|++|+++|..+|++.+.++++.+++.|+
T Consensus 109 ----------------------------------------------I~~I~d~i~~~~aG~~AD~~~l~~~lr~~~~~y~ 142 (287)
T 3nzj_K 109 ----------------------------------------------VIEINPFLLGTMAGGAADCQFWETWLGSQCRLHE 142 (287)
T ss_dssp ----------------------------------------------EEEEETTEEEECEECHHHHHHHHHHHHHHHHHHH
T ss_pred ----------------------------------------------EEEEcCcEEEEecCCHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999
Q ss_pred hhcCCccCHHHHHHHHHHHHHHhccCCCCCCCCCCcccceeeeEEecCCCCeEEEEcCCceEEecCeeeEccChHHHHHH
Q psy14210 162 CKYRTGMTIRHAANLLVNMVRKYRTGNHSSKIPNGLSFGTLMAAYDEILGPQLYMLDNTGLLIEGTKFCVGSGAEYAQAI 241 (312)
Q Consensus 162 ~~~g~~i~v~~la~~ls~~l~~~~~~~~~~~rP~gls~~~IIaG~D~~~gp~Ly~iDpsGs~~e~~~~AiGsGs~~a~~~ 241 (312)
++++++++++.+++++++++|.+|+ +||+ +++||||||+.++|+||++||+|++.++++.|+|+|+.+++++
T Consensus 143 ~~~~~~isv~~la~~ls~~l~~~r~------~p~~--v~~lvaG~D~~~gp~Ly~iDp~G~~~~~~~~AiGsgs~~a~~~ 214 (287)
T 3nzj_K 143 LREKERISVAAASKILSNLVYQYKG------AGLS--MGTMICGYTRKEGPTIYYVDSDGTRLKGDIFCVGSGQTFAYGV 214 (287)
T ss_dssp HHHSSCCCHHHHHHHHHHHHHHTTT------SCCC--EEEEEEEEETTTEEEEEEEETTCCEEECSEEEESTTHHHHHHH
T ss_pred HHhCCCCCHHHHHHHHHHHHHhhcC------CCce--EEEEEEEEcCCCCCEEEEECCCceEEEcCeEEEecchHHHHHH
Confidence 9999999999999999999999998 5876 6789999996578999999999999999999999999999999
Q ss_pred HHhhCCCCCCHHHHHHHHHHHHHHHHHhcCcCCCcEEEEEEECCCeEEeChhHHHHHHHHHhcCC
Q psy14210 242 LDTDYRPDLSEEEAYALATSAIYHACRRDIHSGGCVRLYKINGQGWQQVLSRDVKDIYNDRKEAP 306 (312)
Q Consensus 242 Le~~y~~~ms~eEAi~la~kaL~~a~~rD~~sg~~ieI~iItk~G~~~l~~~eI~~~l~~~~~~~ 306 (312)
||+.|+++||+|||++++++||..+.+||..++++++|++|+++|+++++++||++++++++++.
T Consensus 215 Le~~y~~dms~eEAi~la~~aL~~a~~rD~~sg~~i~V~vItkdg~~~l~~~ev~~~l~~~~e~~ 279 (287)
T 3nzj_K 215 LDSNYKWDLSVEDALYLGKRSILAAAHRDAYSGGSVNLYHVTEDGWIYHGNHDVGELFWKVKEEE 279 (287)
T ss_dssp HHTSCCTTCCHHHHHHHHHHHHHHHHHHBTTCCSEEEEEEEETTEEEEEEEEEHHHHHHHHHHHH
T ss_pred HHHhhcCCCCHHHHHHHHHHHHHHHHhhCcCCCCceEEEEEeCCCEEEeCHHHHHHHHHHHHHhh
Confidence 99999999999999999999999999999999999999999999999999999999999998653
No 6
>1j2q_H Proteasome beta subunit; ubiquitin, CP, hydrolase; HET: CIB; 2.83A {Archaeoglobus fulgidus} SCOP: d.153.1.4
Probab=100.00 E-value=3.8e-46 Score=330.74 Aligned_cols=200 Identities=30% Similarity=0.463 Sum_probs=192.6
Q ss_pred ceEEEEEcCCeEEEEEcCCccCCcccccccccccccccCCCcccccCccccCCcccCCCccccccccccccccccCCCCC
Q psy14210 6 TTTLGFRYPEGIILATDSRATANDLIVSQKLNKFCQSSLGDSCELLHPVYTGGERCGQSYSQRSHCVAETQQDHFLSPPL 85 (312)
Q Consensus 6 ~t~~~~~~~~gv~~~~d~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (312)
||+|||+++||||||+|+|+++|.++.+++.+|
T Consensus 1 tt~vgi~~~dgVvlaad~r~~~g~~~~~~~~~K----------------------------------------------- 33 (202)
T 1j2q_H 1 TTTVGLVCKDGVVMATEKRATMGNFIASKAAKK----------------------------------------------- 33 (202)
T ss_dssp CCEEEEEETTEEEEEEECCEEETTEEEESSCCC-----------------------------------------------
T ss_pred CcEEEEEeCCEEEEEECCCcCcCCEEeeccccC-----------------------------------------------
Confidence 799999999999999999999999999999888
Q ss_pred CCCccccccCCccccccccccCCccccCCCCCCCCCCCCcceEEEecCeEEEEEeCChhHHHHHHHHHHHHhhhhhhhcC
Q psy14210 86 SQSSQHIISGDSCELLHPVYTGGERCGPFSQSSTVPHNTSFQVIPVSSSILCTLAGNAADCVYWLHSLAKECKGYECKYR 165 (312)
Q Consensus 86 ~~~~~~~~~~~~~~~~~~~~~dgVv~~~~~~~~~~~~~~~~KI~~I~d~i~~a~sG~~aD~q~l~~~lr~~~~~~~~~~g 165 (312)
||+|++|++|++||..+|++.+.++++.+++.|+++++
T Consensus 34 ------------------------------------------i~~i~~~i~~~~aG~~aD~~~l~~~~~~~~~~~~~~~~ 71 (202)
T 1j2q_H 34 ------------------------------------------IYQIADRMAMTTAGSVGDAQFLARIIKIEANLYEIRRE 71 (202)
T ss_dssp ------------------------------------------EEEEETTEEEEEEECHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred ------------------------------------------EEEcCCCEEEEecccHHHHHHHHHHHHHHHHHHHHHHC
Confidence 89999999999999999999999999999999999999
Q ss_pred CccCHHHHHHHHHHHHHHhccCCCCCCCCCCcccceeeeEEecCCCCeEEEEcCCceEEecC-eeeEccChHHHHHHHHh
Q psy14210 166 TGMTIRHAANLLVNMVRKYRTGNHSSKIPNGLSFGTLMAAYDEILGPQLYMLDNTGLLIEGT-KFCVGSGAEYAQAILDT 244 (312)
Q Consensus 166 ~~i~v~~la~~ls~~l~~~~~~~~~~~rP~gls~~~IIaG~D~~~gp~Ly~iDpsGs~~e~~-~~AiGsGs~~a~~~Le~ 244 (312)
++++++.+++++++++|.++. |||+ +++|+||||+ ++|+||.+||+|++.+++ +.|+|+|+.+++++||+
T Consensus 72 ~~~~~~~~a~~l~~~~~~~r~------rp~~--~~~lvaG~D~-~gp~Ly~id~~G~~~~~~~~~aiG~g~~~a~~~Le~ 142 (202)
T 1j2q_H 72 RKPTVRAIATLTSNLLNSYRY------FPYL--VQLLIGGIDS-EGKSIYSIDPIGGAIEEKDIVATGSGSLTAYGVLED 142 (202)
T ss_dssp SCCCHHHHHHHHHHHHHHTTT------SCCC--EEEEEEEEET-TEEEEEEECTTCCEEEESSEEEESTTHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHhhCC------CCce--EEEEEEEEeC-CCCEEEEECCCCCeeecCCEEEEcCCHHHHHHHHHh
Confidence 999999999999999999664 8988 5789999998 789999999999999999 99999999999999999
Q ss_pred hCCCCCCHHHHHHHHHHHHHHHHHhcCcCCCcEEEEEEECCCeEEeChhHHHHHHHHHh
Q psy14210 245 DYRPDLSEEEAYALATSAIYHACRRDIHSGGCVRLYKINGQGWQQVLSRDVKDIYNDRK 303 (312)
Q Consensus 245 ~y~~~ms~eEAi~la~kaL~~a~~rD~~sg~~ieI~iItk~G~~~l~~~eI~~~l~~~~ 303 (312)
.|+++||+|||++++++||..+.+||..++++++|++|+++|+++++++|+++++..++
T Consensus 143 ~~~~~~s~eea~~la~~al~~~~~~d~~s~~~i~v~vi~~~g~~~l~~~ei~~~~~~~~ 201 (202)
T 1j2q_H 143 RFTPEIGVDEAVELAVRAIYSAMKRDSASGDGIDVVKITEDEFYQYSPEEVEQILAKFR 201 (202)
T ss_dssp HCCTTCCHHHHHHHHHHHHHHHHTTCTTSCSCEEEEEECSSCEEECHHHHHHHHGGGTT
T ss_pred hcCCCcCHHHHHHHHHHHHHHHHhcCCCCCCcEEEEEEeCCCeEEeCHHHHHHHHHHhh
Confidence 99999999999999999999999999989999999999999999999999999998764
No 7
>1iru_A 20S proteasome; cell cycle, immune response, proteolysis, ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4 PDB: 3unb_G* 3une_G 3unf_G* 3unh_G
Probab=100.00 E-value=8.2e-46 Score=338.47 Aligned_cols=209 Identities=15% Similarity=0.254 Sum_probs=198.1
Q ss_pred cc-CceEEEEEcCCeEEEEEcCCccCCcccccccccccccccCCCcccccCccccCCcccCCCccccccccccccccccC
Q psy14210 3 IT-GTTTLGFRYPEGIILATDSRATANDLIVSQKLNKFCQSSLGDSCELLHPVYTGGERCGQSYSQRSHCVAETQQDHFL 81 (312)
Q Consensus 3 ~~-g~t~~~~~~~~gv~~~~d~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (312)
.+ |||+|||+++||||||+|+|++ +.++.++.++|
T Consensus 33 ~~~Gtt~vgi~~~dgVvlaaD~r~~-~~l~~~~~~~K------------------------------------------- 68 (246)
T 1iru_A 33 NQGGLTSVAVRGKDCAVIVTQKKVP-DKLLDSSTVTH------------------------------------------- 68 (246)
T ss_dssp HTTCCEEEEEECSSEEEEEEECCCC-CSSBCGGGCCS-------------------------------------------
T ss_pred hcCCCCEEEEEeCCEEEEEEeecCC-CcccCCCccCc-------------------------------------------
Confidence 35 9999999999999999999999 68998888888
Q ss_pred CCCCCCCccccccCCccccccccccCCccccCCCCCCCCCCCCcceEEEecCeEEEEEeCChhHHHHHHHHHHHHhhhhh
Q psy14210 82 SPPLSQSSQHIISGDSCELLHPVYTGGERCGPFSQSSTVPHNTSFQVIPVSSSILCTLAGNAADCVYWLHSLAKECKGYE 161 (312)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~dgVv~~~~~~~~~~~~~~~~KI~~I~d~i~~a~sG~~aD~q~l~~~lr~~~~~~~ 161 (312)
|++|++|++|++||..+|++.+.++++.+++.|+
T Consensus 69 ----------------------------------------------i~~i~~~i~~~~aG~~aD~~~l~~~~~~~~~~~~ 102 (246)
T 1iru_A 69 ----------------------------------------------LFKITENIGCVMTGMTADSRSQVQRARYEAANWK 102 (246)
T ss_dssp ----------------------------------------------EEESSSSCEEEEEECHHHHHHHHHHHHHHHHHHH
T ss_pred ----------------------------------------------eEEECCCEEEEEeccHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999
Q ss_pred hhcCCccCHHHHHHHHHHHHHHhccCCCCCCCCCCcccceeeeEEecCCCCeEEEEcCCceEEecCeeeEccChHHHHHH
Q psy14210 162 CKYRTGMTIRHAANLLVNMVRKYRTGNHSSKIPNGLSFGTLMAAYDEILGPQLYMLDNTGLLIEGTKFCVGSGAEYAQAI 241 (312)
Q Consensus 162 ~~~g~~i~v~~la~~ls~~l~~~~~~~~~~~rP~gls~~~IIaG~D~~~gp~Ly~iDpsGs~~e~~~~AiGsGs~~a~~~ 241 (312)
++++++++++.+|+++++++|.+++ +++.|||+ +++||||||+.++|+||.+||+|++.++++.|+|+|+.+++++
T Consensus 103 ~~~~~~~~~~~la~~l~~~~~~y~~--~~~~rp~~--v~~lvaG~D~~~gp~Ly~idp~G~~~~~~~~aiG~gs~~a~~~ 178 (246)
T 1iru_A 103 YKYGYEIPVDMLCKRIADISQVYTQ--NAEMRPLG--CCMILIGIDEEQGPQVYKCDPAGYYCGFKATAAGVKQTESTSF 178 (246)
T ss_dssp HHHSSCCCHHHHHHHHHHHHHHHHH--BSSBCCCS--EEEEEEEEETTTEEEEEEECTTSCEEEBSEEEEETTHHHHHHH
T ss_pred HHHCCCCCHHHHHHHHHHHHHHHhc--CCCCCCcc--eEEEEEEEeCCCCeEEEEEcCCeeEEEeeEEEECCCcHHHHHH
Confidence 9999999999999999999999998 77789988 5789999997578999999999999999999999999999999
Q ss_pred HHhhCCC--CCCHHHHHHHHHHHHHHHHHhcCcCCCcEEEEEEECCC--eEEeChhHHHHHHHHHhcCC
Q psy14210 242 LDTDYRP--DLSEEEAYALATSAIYHACRRDIHSGGCVRLYKINGQG--WQQVLSRDVKDIYNDRKEAP 306 (312)
Q Consensus 242 Le~~y~~--~ms~eEAi~la~kaL~~a~~rD~~sg~~ieI~iItk~G--~~~l~~~eI~~~l~~~~~~~ 306 (312)
||+.|++ +||+|||++++++||..+.+|| .++++++|++|+++| +++++++|+++++..+++++
T Consensus 179 Le~~~~~~~~ms~eea~~la~~al~~~~~rd-~sg~~i~v~vi~~~g~~~~~l~~~ei~~~~~~~~~~~ 246 (246)
T 1iru_A 179 LEKKVKKKFDWTFEQTVETAITCLSTVLSID-FKPSEIEVGVVTVENPKFRILTEAEIDAHLVALAERD 246 (246)
T ss_dssp HHHHTTSCCCCCHHHHHHHHHHHHHHHTTCC-CCTTSEEEEEEETTEEEEEECCHHHHHHHHHHHHTC-
T ss_pred HHHhhcccCCCCHHHHHHHHHHHHHHHhccc-CCCCcEEEEEEECCCCeEEECCHHHHHHHHHHhhccC
Confidence 9999999 9999999999999999999999 889999999999998 69999999999999997753
No 8
>1iru_C 20S proteasome; cell cycle, immune response, proteolysis, ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4 PDB: 3unb_B* 3une_B 3unf_B* 3unh_B
Probab=100.00 E-value=8.2e-46 Score=341.57 Aligned_cols=211 Identities=20% Similarity=0.316 Sum_probs=200.7
Q ss_pred cccCceEEEEEcCCeEEEEEcCCccCCcccccccccccccccCCCcccccCccccCCcccCCCccccccccccccccccC
Q psy14210 2 FITGTTTLGFRYPEGIILATDSRATANDLIVSQKLNKFCQSSLGDSCELLHPVYTGGERCGQSYSQRSHCVAETQQDHFL 81 (312)
Q Consensus 2 ~~~g~t~~~~~~~~gv~~~~d~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (312)
+.+|||+|||+++||||||+|+|+++|.++.++.++|
T Consensus 28 v~~Gtt~vgi~~~dgVVlaaD~r~~~g~~~~~~~~~K------------------------------------------- 64 (261)
T 1iru_C 28 IGHAGTCLGILANDGVLLAAERRNIHKLLDEVFFSEK------------------------------------------- 64 (261)
T ss_dssp HTTSCCEEEEBCSSEEEEEECCCCCCTTBCCCSSCSS-------------------------------------------
T ss_pred HhcCCcEEEEEeCCEEEEEEecccCCcccccCCCCcc-------------------------------------------
Confidence 3589999999999999999999999998888877888
Q ss_pred CCCCCCCccccccCCccccccccccCCccccCCCCCCCCCCCCcceEEEecCeEEEEEeCChhHHHHHHHHHHHHhhhhh
Q psy14210 82 SPPLSQSSQHIISGDSCELLHPVYTGGERCGPFSQSSTVPHNTSFQVIPVSSSILCTLAGNAADCVYWLHSLAKECKGYE 161 (312)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~dgVv~~~~~~~~~~~~~~~~KI~~I~d~i~~a~sG~~aD~q~l~~~lr~~~~~~~ 161 (312)
|++|++|++|++||+.+|++.|+++++.+++.|+
T Consensus 65 ----------------------------------------------I~~i~~~i~~~~aG~~aD~~~l~~~~~~~~~~~~ 98 (261)
T 1iru_C 65 ----------------------------------------------IYKLNEDMACSVAGITSDANVLTNELRLIAQRYL 98 (261)
T ss_dssp ----------------------------------------------EEECSSSEEEEEEECHHHHHHHHHHHHHHHHHHH
T ss_pred ----------------------------------------------EEEecCCEEEEEeEcHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999
Q ss_pred hhcCCccCHHHHHHHHHHHHHHhccCCCCCCCCCCcccceeeeEEecCCCCeEEEEcCCceEEecCeeeEccChHHHHHH
Q psy14210 162 CKYRTGMTIRHAANLLVNMVRKYRTGNHSSKIPNGLSFGTLMAAYDEILGPQLYMLDNTGLLIEGTKFCVGSGAEYAQAI 241 (312)
Q Consensus 162 ~~~g~~i~v~~la~~ls~~l~~~~~~~~~~~rP~gls~~~IIaG~D~~~gp~Ly~iDpsGs~~e~~~~AiGsGs~~a~~~ 241 (312)
++++++++++.+|+++++++|.+++ +++.|||+ +++||||||+.++|+||.+||+|++.++++.|+|+|+.+++++
T Consensus 99 ~~~~~~~~v~~la~~l~~~~~~~~~--~~~~rP~~--v~~lvaG~D~~~gp~Ly~idp~G~~~~~~~~aiGsgs~~a~~~ 174 (261)
T 1iru_C 99 LQYQEPIPCEQLVTALCDIKQAYTQ--FGGKRPFG--VSLLYIGWDKHYGFQLYQSDPSGNYGGWKATCIGNNSAAAVSM 174 (261)
T ss_dssp HHHSSCCCHHHHHHHHHHHHHHTTT--BSSCCCCC--EEEEEEEEETTTEEEEEEEETTTEEEECSEEEESTTTTHHHHH
T ss_pred HHHCCCCCHHHHHHHHHHHHHHhcc--ccCcCcce--EEEEEEEEeCCCCcEEEEECCCceEEeeeeEEeCcccHHHHHH
Confidence 9999999999999999999999998 88899998 5789999996578999999999999999999999999999999
Q ss_pred HHhhCCC-CCCHHHHHHHHHHHHHHHHHhcCcCCCcEEEEEEECCC----eEEeChhHHHHHHHHHhcC
Q psy14210 242 LDTDYRP-DLSEEEAYALATSAIYHACRRDIHSGGCVRLYKINGQG----WQQVLSRDVKDIYNDRKEA 305 (312)
Q Consensus 242 Le~~y~~-~ms~eEAi~la~kaL~~a~~rD~~sg~~ieI~iItk~G----~~~l~~~eI~~~l~~~~~~ 305 (312)
||+.|++ +||+|||++++++||..+.++|..++++++|++|+++| +++++++||++++..+.++
T Consensus 175 Le~~~~~~~ms~eeA~~la~~al~~~~~~d~~sg~~i~v~vi~~~~~~~~~~~l~~~ei~~~l~~~~~~ 243 (261)
T 1iru_C 175 LKQDYKEGEMTLKSALALAIKVLNKTMDVSKLSAEKVEIATLTRENGKTVIRVLKQKEVEQLIKKHEEE 243 (261)
T ss_dssp HHHHCCTTCCCHHHHHHHHHHHHHHSSSCTTCCSTTCEEEEEECCSSSCEEEECCHHHHHHHHHHHHTT
T ss_pred HHHhhccCCCCHHHHHHHHHHHHHHHHhccCCCCCcEEEEEEEcCCCeeeEEECCHHHHHHHHHHHHhc
Confidence 9999999 99999999999999999999999999999999999987 7999999999999998543
No 9
>1ryp_L 20S proteasome; multicatalytic proteinase, protein degradation, antigen processing, hydrolase, protease; 1.90A {Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 1fnt_L 1vsy_L 1z7q_L 3l5q_P 1g65_K* 1g0u_K* 1jd2_K* 2f16_K* 2fak_K* 2fny_K* 2gpl_K* 2zcy_K* 3bdm_K* 3d29_K* 3dy3_K* 3dy4_K* 3e47_K* 3gpj_K* 3gpt_K* 3gpw_K* ...
Probab=100.00 E-value=6e-46 Score=331.99 Aligned_cols=202 Identities=39% Similarity=0.690 Sum_probs=194.2
Q ss_pred ceEEEEEcCCeEEEEEcCCccCCcccccccccccccccCCCcccccCccccCCcccCCCccccccccccccccccCCCCC
Q psy14210 6 TTTLGFRYPEGIILATDSRATANDLIVSQKLNKFCQSSLGDSCELLHPVYTGGERCGQSYSQRSHCVAETQQDHFLSPPL 85 (312)
Q Consensus 6 ~t~~~~~~~~gv~~~~d~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (312)
||+|||+++||||||+|+|+++|.++.+++.+|
T Consensus 1 tt~vgi~~~dgVvlaaD~r~~~g~~~~~~~~~K----------------------------------------------- 33 (212)
T 1ryp_L 1 TTTLAFRFQGGIIVAVDSRATAGNWVASQTVKR----------------------------------------------- 33 (212)
T ss_dssp CCEEEEEETTEEEEEECCCEEETTEEEESCCCC-----------------------------------------------
T ss_pred CcEEEEEeCCEEEEEEcCCcccCCeEecCcccc-----------------------------------------------
Confidence 799999999999999999999999999999888
Q ss_pred CCCccccccCCccccccccccCCccccCCCCCCCCCCCCcceEEEecCeEEEEEeCChhHHHHHHHHHHHHhhhhhhhcC
Q psy14210 86 SQSSQHIISGDSCELLHPVYTGGERCGPFSQSSTVPHNTSFQVIPVSSSILCTLAGNAADCVYWLHSLAKECKGYECKYR 165 (312)
Q Consensus 86 ~~~~~~~~~~~~~~~~~~~~~dgVv~~~~~~~~~~~~~~~~KI~~I~d~i~~a~sG~~aD~q~l~~~lr~~~~~~~~~~g 165 (312)
|++|++|++|++||..+|++.+.++++.+++.|+++++
T Consensus 34 ------------------------------------------i~~i~~~i~~~~aG~~aD~~~l~~~~~~~~~~~~~~~~ 71 (212)
T 1ryp_L 34 ------------------------------------------VIEINPFLLGTMAGGAADCQFWETWLGSQCRLHELREK 71 (212)
T ss_dssp ------------------------------------------EEEEETTEEEECCBCHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred ------------------------------------------eeeeCCcEEEEccccHHHHHHHHHHHHHHHHHHHHHcC
Confidence 89999999999999999999999999999999999999
Q ss_pred CccCHHHHHHHHHHHHHHhccCCCCCCCCCCcccceeeeEEecCCCCeEEEEcCCceEEecCeeeEccChHHHHHHHHhh
Q psy14210 166 TGMTIRHAANLLVNMVRKYRTGNHSSKIPNGLSFGTLMAAYDEILGPQLYMLDNTGLLIEGTKFCVGSGAEYAQAILDTD 245 (312)
Q Consensus 166 ~~i~v~~la~~ls~~l~~~~~~~~~~~rP~gls~~~IIaG~D~~~gp~Ly~iDpsGs~~e~~~~AiGsGs~~a~~~Le~~ 245 (312)
++++++.+++++++++|.+|+ .||+ +++|+||||++++|+||.+||+|++.+++++|+|+|+.+++++||+.
T Consensus 72 ~~~~v~~la~~l~~~~~~~~~------~p~~--v~~lvaG~D~~~gp~Ly~idp~G~~~~~~~~aiGsgs~~a~~~Le~~ 143 (212)
T 1ryp_L 72 ERISVAAASKILSNLVYQYKG------AGLS--MGTMICGYTRKEGPTIYYVDSDGTRLKGDIFCVGSGQTFAYGVLDSN 143 (212)
T ss_dssp SCCCHHHHHHHHHHHHHHTTT------SCCC--BEEEEEEEETTTEEEEEEEETTCCEEECSEEEESTTHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHhhCC------CCce--EEEEEEEEeCCCCCEEEEEcCCceeEecCCEEEcCCHHHHHHHHHhh
Confidence 999999999999999999998 4877 57899999964789999999999999999999999999999999999
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHHhcCcCCCcEEEEEEECCCeEEeChhHHHHHHHHHhc
Q psy14210 246 YRPDLSEEEAYALATSAIYHACRRDIHSGGCVRLYKINGQGWQQVLSRDVKDIYNDRKE 304 (312)
Q Consensus 246 y~~~ms~eEAi~la~kaL~~a~~rD~~sg~~ieI~iItk~G~~~l~~~eI~~~l~~~~~ 304 (312)
|+++||+|||++++++||..+.+||..++++++|++|+++|+++++++|++++++++++
T Consensus 144 ~~~~~s~eea~~la~~al~~~~~rd~~s~~~i~v~vi~~~g~~~~~~~ei~~~~~~~~~ 202 (212)
T 1ryp_L 144 YKWDLSVEDALYLGKRSILAAAHRDAYSGGSVNLYHVTEDGWIYHGNHDVGELFWKVKE 202 (212)
T ss_dssp CCTTCCHHHHHHHHHHHHHHHHHHBTTCCSEEEEEEEETTEEEEEEEEEHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHHHHHHhccccCCceEEEEEcCCceEEECHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999998753
No 10
>1iru_B 20S proteasome; cell cycle, immune response, proteolysis, ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4 PDB: 3unb_A* 3une_A 3unf_A* 3unh_A
Probab=100.00 E-value=4.2e-46 Score=337.63 Aligned_cols=205 Identities=19% Similarity=0.319 Sum_probs=195.5
Q ss_pred cccCceEEEEEcCCeEEEEEcCCccCCcccccccccccccccCCCcccccCccccCCcccCCCccccccccccccccccC
Q psy14210 2 FITGTTTLGFRYPEGIILATDSRATANDLIVSQKLNKFCQSSLGDSCELLHPVYTGGERCGQSYSQRSHCVAETQQDHFL 81 (312)
Q Consensus 2 ~~~g~t~~~~~~~~gv~~~~d~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (312)
+.+|||+|||+++||||||+|+|++ +.++.+++++|
T Consensus 28 v~~Gtt~vgi~~~dgVvlaaD~r~~-~~l~~~~~~~K------------------------------------------- 63 (233)
T 1iru_B 28 VAGGAPSVGIKAANGVVLATEKKQK-SILYDERSVHK------------------------------------------- 63 (233)
T ss_dssp HHTSCCEEEEECSSCEEEEEECCCC-CSSBCSTTCCS-------------------------------------------
T ss_pred HHcCCcEEEEEeCCEEEEEEEecCC-ccccccccCCe-------------------------------------------
Confidence 3579999999999999999999999 58888888888
Q ss_pred CCCCCCCccccccCCccccccccccCCccccCCCCCCCCCCCCcceEEEecCeEEEEEeCChhHHHHHHHHHHHHhhhhh
Q psy14210 82 SPPLSQSSQHIISGDSCELLHPVYTGGERCGPFSQSSTVPHNTSFQVIPVSSSILCTLAGNAADCVYWLHSLAKECKGYE 161 (312)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~dgVv~~~~~~~~~~~~~~~~KI~~I~d~i~~a~sG~~aD~q~l~~~lr~~~~~~~ 161 (312)
|++|++|++|+++|..+|++.+.++++.+++.|+
T Consensus 64 ----------------------------------------------i~~i~~~i~~~~aG~~aD~~~l~~~~~~~~~~~~ 97 (233)
T 1iru_B 64 ----------------------------------------------VEPITKHIGLVYSGMGPDYRVLVHRARKLAQQYY 97 (233)
T ss_dssp ----------------------------------------------SEESSSSEEEEEEECHHHHHHHHHHHHHHHHHHH
T ss_pred ----------------------------------------------EEEECCCEEEEEEEccHHHHHHHHHHHHHHHHHH
Confidence 8999999999999999999999999999999999
Q ss_pred hhcCCccCHHHHHHHHHHHHHHhccCCCCCCCCCCcccceeeeEEecCCCCeEEEEcCCceEEecCeeeEccChHHHHHH
Q psy14210 162 CKYRTGMTIRHAANLLVNMVRKYRTGNHSSKIPNGLSFGTLMAAYDEILGPQLYMLDNTGLLIEGTKFCVGSGAEYAQAI 241 (312)
Q Consensus 162 ~~~g~~i~v~~la~~ls~~l~~~~~~~~~~~rP~gls~~~IIaG~D~~~gp~Ly~iDpsGs~~e~~~~AiGsGs~~a~~~ 241 (312)
++++++++++.+++++++++|.|++ +++.|||+ +++||||||+ .+|+||.+||+|++.++++.++|+|+.+++++
T Consensus 98 ~~~~~~~~v~~la~~l~~~~~~y~~--~~~~rP~~--v~~lvaG~D~-~gp~Ly~id~~G~~~~~~~~aiG~gs~~a~~~ 172 (233)
T 1iru_B 98 LVYQEPIPTAQLVQRVASVMQEYTQ--SGGVRPFG--VSLLICGWNE-GRPYLFQSDPSGAYFAWKATAMGKNYVNGKTF 172 (233)
T ss_dssp HHHSSCCCHHHHHHHHHHHHHHTTT--SBTBCCCS--EEEEEEEECS-SSEEEEEECTTSCEEEBSEEEESTTHHHHHHH
T ss_pred HHHCCCCCHHHHHHHHHHHHHHhcC--cCCCCCcE--EEEEEEEEeC-CCCeEEEECCCCCEEEeeEEEECCCCHHHHHH
Confidence 9999999999999999999999998 78899998 5789999996 78999999999999999999999999999999
Q ss_pred HHhhCCCCCCHHHHHHHHHHHHHHHHHhcCcCCCcEEEEEEECCCeEEeChhHHHHHHHHH
Q psy14210 242 LDTDYRPDLSEEEAYALATSAIYHACRRDIHSGGCVRLYKINGQGWQQVLSRDVKDIYNDR 302 (312)
Q Consensus 242 Le~~y~~~ms~eEAi~la~kaL~~a~~rD~~sg~~ieI~iItk~G~~~l~~~eI~~~l~~~ 302 (312)
||+.|+++||+|||++++++||..+.++| .++++++|++|+++|+++++++||++++..+
T Consensus 173 Le~~~~~~ms~eea~~la~~al~~~~~~d-~sg~~i~v~vi~~~g~~~l~~~ei~~~~~~~ 232 (233)
T 1iru_B 173 LEKRYNEDLELEDAIHTAILTLKESFEGQ-MTEDNIEVGICNEAGFRRLTPTEVKDYLAAI 232 (233)
T ss_dssp HHHHCCTTCCHHHHHHHHHHHHHTTCCSC-CCSSSEEEEEEETTEEEECCHHHHHHHHTTC
T ss_pred HHHHhccCCCHHHHHHHHHHHHHHHhhcc-CCCCCEEEEEEECCCEEECCHHHHHHHHHhc
Confidence 99999999999999999999999999999 6789999999999999999999999998654
No 11
>1ryp_C 20S proteasome; multicatalytic proteinase, protein degradation, antigen processing, hydrolase, protease; 1.90A {Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 1jd2_B* 1g65_B 2f16_B* 2fak_B* 2fny_B* 2gpl_B* 3d29_B* 3dy3_B* 3dy4_B* 3e47_B* 3gpj_B* 3gpt_B* 3gpw_B* 3hye_B* 3mg0_B* 3mg4_B* 3okj_B* 3shj_B* 3tdd_B* 3nzj_B* ...
Probab=100.00 E-value=1.3e-45 Score=336.69 Aligned_cols=210 Identities=21% Similarity=0.325 Sum_probs=197.8
Q ss_pred cccCceEEEEEcCCeEEEEEcCCccCCcccccccccccccccCCCcccccCccccCCcccCCCccccccccccccccccC
Q psy14210 2 FITGTTTLGFRYPEGIILATDSRATANDLIVSQKLNKFCQSSLGDSCELLHPVYTGGERCGQSYSQRSHCVAETQQDHFL 81 (312)
Q Consensus 2 ~~~g~t~~~~~~~~gv~~~~d~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (312)
+.+|||+|||+++||||||+|+|+++|.++.+++++|
T Consensus 28 v~~Gtt~vgi~~~dgVvlaaD~r~~~g~~~~~~~~~K------------------------------------------- 64 (244)
T 1ryp_C 28 ISHAGTAIGIMASDGIVLAAERKVTSTLLEQDTSTEK------------------------------------------- 64 (244)
T ss_dssp HTTSCCEEEEEETTEEEEEEECSSCCSSBCSTTCCSS-------------------------------------------
T ss_pred HhcCCcEEEEEeCCEEEEEEeeccCCcCccCCCCCCc-------------------------------------------
Confidence 3589999999999999999999999987776888888
Q ss_pred CCCCCCCccccccCCccccccccccCCccccCCCCCCCCCCCCcceEEEecCeEEEEEeCChhHHHHHHHHHHHHhhhhh
Q psy14210 82 SPPLSQSSQHIISGDSCELLHPVYTGGERCGPFSQSSTVPHNTSFQVIPVSSSILCTLAGNAADCVYWLHSLAKECKGYE 161 (312)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~dgVv~~~~~~~~~~~~~~~~KI~~I~d~i~~a~sG~~aD~q~l~~~lr~~~~~~~ 161 (312)
|++|++|++|++||..+|++.+.++++.+++.|+
T Consensus 65 ----------------------------------------------i~~i~~~i~~~~aG~~aD~~~l~~~~~~~~~~~~ 98 (244)
T 1ryp_C 65 ----------------------------------------------LYKLNDKIAVAVAGLTADAEILINTARIHAQNYL 98 (244)
T ss_dssp ----------------------------------------------EEESSSSEEEEEEECHHHHHHHHHHHHHHHHHHH
T ss_pred ----------------------------------------------EEEECCCEEEEEEEcHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999
Q ss_pred hhcCCccCHHHHHHHHHHHHHHhccCCCCCCCCCCcccceeeeEEecCCCCeEEEEcCCceEEecCeeeEccChHHHHHH
Q psy14210 162 CKYRTGMTIRHAANLLVNMVRKYRTGNHSSKIPNGLSFGTLMAAYDEILGPQLYMLDNTGLLIEGTKFCVGSGAEYAQAI 241 (312)
Q Consensus 162 ~~~g~~i~v~~la~~ls~~l~~~~~~~~~~~rP~gls~~~IIaG~D~~~gp~Ly~iDpsGs~~e~~~~AiGsGs~~a~~~ 241 (312)
++++++++++.+|+++++++|.+++ ++++|||+ +++||||||++++|+||.+||+|++.++++.|+|+|+.+++++
T Consensus 99 ~~~~~~~~v~~la~~l~~~~~~~~~--~~~~rp~~--v~~lvaG~D~~~gp~Ly~idp~G~~~~~~~~aiGsgs~~a~~~ 174 (244)
T 1ryp_C 99 KTYNEDIPVEILVRRLSDIKQGYTQ--HGGLRPFG--VSFIYAGYDDRYGYQLYTSNPSGNYTGWKAISVGANTSAAQTL 174 (244)
T ss_dssp HHHSSCCCHHHHHHHHHHHHHHHHH--BSSCCCCC--EEEEEEEEETTTEEEEEEECTTCCEEEBSEEEESTTHHHHHHH
T ss_pred HHHCCCCCHHHHHHHHHHHHHHHhc--cCCccceE--EEEEEEEEcCCCCCEEEEECCCccEEeeeEEEECCCcHHHHHH
Confidence 9999999999999999999999998 78899988 5789999994478999999999999999999999999999999
Q ss_pred HHhhCCCCCCHHHHHHHHHHHHHHHHHhcCcCCCcEEEEEEE--CCC----eEEeChhHHHHHHHHHhc
Q psy14210 242 LDTDYRPDLSEEEAYALATSAIYHACRRDIHSGGCVRLYKIN--GQG----WQQVLSRDVKDIYNDRKE 304 (312)
Q Consensus 242 Le~~y~~~ms~eEAi~la~kaL~~a~~rD~~sg~~ieI~iIt--k~G----~~~l~~~eI~~~l~~~~~ 304 (312)
||+.|+++||+|||++++++||..+.+||..++++++|++|+ ++| +++++++||++++..++.
T Consensus 175 Le~~~~~~ms~eea~~la~~al~~~~~rd~~sg~~i~v~vi~~~~~~~~~~~~~l~~~ei~~~~~~~~~ 243 (244)
T 1ryp_C 175 LQMDYKDDMKVDDAIELALKTLSKTTDSSALTYDRLEFATIRKGANDGEVYQKIFKPQEIKDILVKTGI 243 (244)
T ss_dssp HHHHCCTTCCHHHHHHHHHHHHHHHCSSSSCCGGGEEEEEEECCSSSSSCEEEECCHHHHHHHHHHHTC
T ss_pred HHHhhhcCCCHHHHHHHHHHHHHHHhccccCCCCcEEEEEEEeecCCCceeEEECCHHHHHHHHHHhhc
Confidence 999999999999999999999999999965679999999999 886 899999999999998753
No 12
>1yar_A Proteasome alpha subunit; proteasome 20S, PA26 proteasome activator 11S, hydrolase-HYD activator complex; 1.90A {Thermoplasma acidophilum} SCOP: d.153.1.4 PDB: 1ya7_A 1pma_A 3c91_A 3c92_A 3ipm_A 2ku1_A 2ku2_A 1yau_A 3jrm_A 3jse_A 3jtl_A
Probab=100.00 E-value=8.3e-46 Score=335.72 Aligned_cols=202 Identities=20% Similarity=0.358 Sum_probs=192.7
Q ss_pred cccCceEEEEEcCCeEEEEEcCCccCCcccccccccccccccCCCcccccCccccCCcccCCCccccccccccccccccC
Q psy14210 2 FITGTTTLGFRYPEGIILATDSRATANDLIVSQKLNKFCQSSLGDSCELLHPVYTGGERCGQSYSQRSHCVAETQQDHFL 81 (312)
Q Consensus 2 ~~~g~t~~~~~~~~gv~~~~d~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (312)
+.+|||+|||+++||||||+|+|++++ ++.+++++|
T Consensus 31 v~~Gtt~vgi~~~dgVvlaaD~r~~~~-~~~~~~~~K------------------------------------------- 66 (233)
T 1yar_A 31 VKKGSTALGMKFANGVLLISDKKVRSR-LIEQNSIEK------------------------------------------- 66 (233)
T ss_dssp HTTSCCEEEEEETTEEEEEECCCCCCT-TBCSTTCCS-------------------------------------------
T ss_pred HhcCCcEEEEEECCEEEEEEeccCCcc-cccccccCe-------------------------------------------
Confidence 358999999999999999999999995 788888888
Q ss_pred CCCCCCCccccccCCccccccccccCCccccCCCCCCCCCCCCcceEEEecCeEEEEEeCChhHHHHHHHHHHHHhhhhh
Q psy14210 82 SPPLSQSSQHIISGDSCELLHPVYTGGERCGPFSQSSTVPHNTSFQVIPVSSSILCTLAGNAADCVYWLHSLAKECKGYE 161 (312)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~dgVv~~~~~~~~~~~~~~~~KI~~I~d~i~~a~sG~~aD~q~l~~~lr~~~~~~~ 161 (312)
|++|++|++|++||..+|++.+.++++.+++.|+
T Consensus 67 ----------------------------------------------i~~i~~~i~~~~aG~~aD~~~l~~~~~~~~~~~~ 100 (233)
T 1yar_A 67 ----------------------------------------------IQLIDDYVAAVTSGLVADARVLVDFARISAQQEK 100 (233)
T ss_dssp ----------------------------------------------EEEEETTEEEEEEEBHHHHHHHHHHHHHHHHHHH
T ss_pred ----------------------------------------------EEEecCCEEEEEeeCHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999
Q ss_pred hhcCCccCHHHHHHHHHHHHHHhccCCCCCCCCCCcccceeeeEEecCCCCeEEEEcCCceEEecCeeeEccChHHHHHH
Q psy14210 162 CKYRTGMTIRHAANLLVNMVRKYRTGNHSSKIPNGLSFGTLMAAYDEILGPQLYMLDNTGLLIEGTKFCVGSGAEYAQAI 241 (312)
Q Consensus 162 ~~~g~~i~v~~la~~ls~~l~~~~~~~~~~~rP~gls~~~IIaG~D~~~gp~Ly~iDpsGs~~e~~~~AiGsGs~~a~~~ 241 (312)
++++++++++.+|+++++++|.+++ +++.|||+ +++||||||+ ++|+||.+||+|++.++++.|+|+|+.+++++
T Consensus 101 ~~~~~~~~v~~~a~~l~~~~~~~~~--~~~~rp~~--v~~lvaG~D~-~gp~Ly~id~~G~~~~~~~~aiG~gs~~a~~~ 175 (233)
T 1yar_A 101 VTYGSLVNIENLVKRVADQMQQYTQ--YGGVRPYG--VSLIFAGIDQ-IGPRLFDCDPAGTINEYKATAIGSGKDAVVSF 175 (233)
T ss_dssp HHHSSCCCHHHHHHHHHHHHHHTTT--BTTBCCCC--EEEEEEEECS-SCEEEEEECTTCCEEEBSEEEESTTHHHHHHH
T ss_pred HHHCCCCCHHHHHHHHHHHHHHhcC--cCCcCcce--EEEEEEEEeC-CCCEEEEECCCCCEEeeeEEEEcCCcHHHHHH
Confidence 9999999999999999999999999 88899988 5789999998 79999999999999999999999999999999
Q ss_pred HHhhCCCCCCHHHHHHHHHHHHHHHHHhcCcCCCcEEEEEEECCC-eEEeChhHHHHHH
Q psy14210 242 LDTDYRPDLSEEEAYALATSAIYHACRRDIHSGGCVRLYKINGQG-WQQVLSRDVKDIY 299 (312)
Q Consensus 242 Le~~y~~~ms~eEAi~la~kaL~~a~~rD~~sg~~ieI~iItk~G-~~~l~~~eI~~~l 299 (312)
||+.|+++||+|||++++++||..+.++|. ++++++|++|+++| +++++++||++++
T Consensus 176 Le~~~~~~~s~eea~~la~~al~~~~~~d~-s~~~i~v~vi~~~~~~~~~~~~ei~~~l 233 (233)
T 1yar_A 176 LEREYKENLPEKEAVTLGIKALKSSLEEGE-ELKAPEIASITVGNKYRIYDQEEVKKFL 233 (233)
T ss_dssp HHHHCCTTCCHHHHHHHHHHHHHHTSCSSC-CCCCCEEEEEETTSCCEECCHHHHHTTC
T ss_pred HHHHhccCCCHHHHHHHHHHHHHHHhhccC-CCCcEEEEEEECCCCEEECCHHHHHhhC
Confidence 999999999999999999999999999997 79999999999998 9999999998763
No 13
>1ryp_D 20S proteasome; multicatalytic proteinase, protein degradation, antigen processing, hydrolase, protease; 1.90A {Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 1jd2_C* 1g65_C 2f16_C* 2fak_C* 2fny_C* 2gpl_C* 3d29_C* 3dy3_C* 3dy4_C* 3e47_C* 3gpj_C* 3gpt_C* 3gpw_C* 3hye_C* 3mg0_C* 3mg4_C* 3oeu_C* 3oev_C* 3okj_C* 3shj_C* ...
Probab=100.00 E-value=3.9e-45 Score=333.04 Aligned_cols=208 Identities=16% Similarity=0.280 Sum_probs=196.7
Q ss_pred cccCceEEEEEcCCeEEEEEcCCccCCcccccccccccccccCCCcccccCccccCCcccCCCccccccccccccccccC
Q psy14210 2 FITGTTTLGFRYPEGIILATDSRATANDLIVSQKLNKFCQSSLGDSCELLHPVYTGGERCGQSYSQRSHCVAETQQDHFL 81 (312)
Q Consensus 2 ~~~g~t~~~~~~~~gv~~~~d~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (312)
+.+|||+|||+++||||||+|+|+++|.++.+++++|
T Consensus 25 v~~Gtt~vgi~~~dgVvlaaD~r~~~g~~~~~~~~~K------------------------------------------- 61 (241)
T 1ryp_D 25 VKRGTCAVGVKGKNCVVLGCERRSTLKLQDTRITPSK------------------------------------------- 61 (241)
T ss_dssp HTTSCCEEEEECSSCEEEEEECCCSSCCBCTTTSCCS-------------------------------------------
T ss_pred HHcCCCEEEEEeCCEEEEEEeeccCccCccccCCcCc-------------------------------------------
Confidence 3589999999999999999999999998888878888
Q ss_pred CCCCCCCccccccCCccccccccccCCccccCCCCCCCCCCCCcceEEEecCeEEEEEeCChhHHHHHHHHHHHHhhhhh
Q psy14210 82 SPPLSQSSQHIISGDSCELLHPVYTGGERCGPFSQSSTVPHNTSFQVIPVSSSILCTLAGNAADCVYWLHSLAKECKGYE 161 (312)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~dgVv~~~~~~~~~~~~~~~~KI~~I~d~i~~a~sG~~aD~q~l~~~lr~~~~~~~ 161 (312)
|++|++|++|+++|+.+|++.+.++++.+++.|+
T Consensus 62 ----------------------------------------------i~~i~~~i~~~~aG~~aD~~~l~~~~~~~~~~~~ 95 (241)
T 1ryp_D 62 ----------------------------------------------VSKIDSHVVLSFSGLNADSRILIEKARVEAQSHR 95 (241)
T ss_dssp ----------------------------------------------EEEEETTEEEEEEECHHHHHHHHHHHHHHHHHHH
T ss_pred ----------------------------------------------EEEecCCEEEEEeecHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999
Q ss_pred hhcCCccCHHHHHHHHHHHHHHhccCCCCCCCCCCcccceeeeEEecC-CCCeEEEEcCCceEEecCeeeEccChHHHHH
Q psy14210 162 CKYRTGMTIRHAANLLVNMVRKYRTGNHSSKIPNGLSFGTLMAAYDEI-LGPQLYMLDNTGLLIEGTKFCVGSGAEYAQA 240 (312)
Q Consensus 162 ~~~g~~i~v~~la~~ls~~l~~~~~~~~~~~rP~gls~~~IIaG~D~~-~gp~Ly~iDpsGs~~e~~~~AiGsGs~~a~~ 240 (312)
++++++++++.+|+++++++|.+++ ++++|||+ +++||||||+. ++|+||.+||+|++.++++.|+|+|+.++++
T Consensus 96 ~~~~~~~~v~~la~~l~~~~~~~~~--~~~~rP~~--v~~lvaG~D~~~~gp~Ly~idp~G~~~~~~~~aiG~gs~~a~~ 171 (241)
T 1ryp_D 96 LTLEDPVTVEYLTRYVAGVQQRYTQ--SGGVRPFG--VSTLIAGFDPRDDEPKLYQTEPSGIYSSWSAQTIGRNSKTVRE 171 (241)
T ss_dssp HHHSSCCCHHHHHHHHHHHHHHTTS--STTBCCCS--EEEEEEECCTTCCSCEEEEECTTSCEEEBSEEEESTTHHHHHH
T ss_pred HHHCCCCCHHHHHHHHHHHHHHHcc--CCCCCCcc--eeeEEEEEcCCCCCeeEEEECCCCCEEEeeeEEECCCcHHHHH
Confidence 9999999999999999999999998 78889988 57899999975 6899999999999999999999999999999
Q ss_pred HHHhhC---CCCCCHHHHHHHHHHHHHHHHHhcCcCCCcEEEEEEECCC-eEEeChhHHHHHHHHHhcC
Q psy14210 241 ILDTDY---RPDLSEEEAYALATSAIYHACRRDIHSGGCVRLYKINGQG-WQQVLSRDVKDIYNDRKEA 305 (312)
Q Consensus 241 ~Le~~y---~~~ms~eEAi~la~kaL~~a~~rD~~sg~~ieI~iItk~G-~~~l~~~eI~~~l~~~~~~ 305 (312)
+||+.| +++||+|||++++++||..+.+ .++++++|++|+++| +++++++|+++++..++++
T Consensus 172 ~Le~~~~~~~~~ms~eea~~l~~~al~~~~~---~sg~~i~v~vi~~~~~~~~l~~~ei~~~~~~~~~~ 237 (241)
T 1ryp_D 172 FLEKNYDRKEPPATVEECVKLTVRSLLEVVQ---TGAKNIEITVVKPDSDIVALSSEEINQYVTQIEQE 237 (241)
T ss_dssp HHHTTCCTTSCCCSHHHHHHHHHHHHHHHHC---SCSTTEEEEEEETTTEEEECCHHHHHHHHHHHTHH
T ss_pred HHHHhhhcccCCCCHHHHHHHHHHHHHHHhc---CCCCcEEEEEEECCCcEEECCHHHHHHHHHHHhhh
Confidence 999999 9999999999999999999985 678999999999985 9999999999999988654
No 14
>1ryp_E 20S proteasome; multicatalytic proteinase, protein degradation, antigen processing, hydrolase, protease; 1.90A {Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 1jd2_D* 1g65_D 2f16_D* 2fak_D* 2fny_D* 2gpl_D* 3d29_D* 3dy3_D* 3dy4_D* 3e47_D* 3gpj_D* 3gpt_D* 3gpw_D* 3hye_D* 3mg0_D* 3mg4_D* 3okj_D* 3shj_D* 3tdd_D* 2z5c_C ...
Probab=100.00 E-value=1.3e-45 Score=336.22 Aligned_cols=210 Identities=21% Similarity=0.306 Sum_probs=197.7
Q ss_pred cccCceEEEEEcCCeEEEEEcCCccCCcccccccccccccccCCCcccccCccccCCcccCCCccccccccccccccccC
Q psy14210 2 FITGTTTLGFRYPEGIILATDSRATANDLIVSQKLNKFCQSSLGDSCELLHPVYTGGERCGQSYSQRSHCVAETQQDHFL 81 (312)
Q Consensus 2 ~~~g~t~~~~~~~~gv~~~~d~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (312)
+.+|||+|||+++||||||+|+|+++|.++ ++.++|
T Consensus 23 v~~Gtt~vgi~~~dgVvlaaD~r~~~g~~~-~~~~~K------------------------------------------- 58 (242)
T 1ryp_E 23 IKLGSTAIGIATKEGVVLGVEKRATSPLLE-SDSIEK------------------------------------------- 58 (242)
T ss_dssp HTTSCCEEEEECSSCEEEEEECCCSSTTBC-GGGCCC-------------------------------------------
T ss_pred HHcCCCEEEEEECCEEEEEEeecCCCcCcc-CccCCc-------------------------------------------
Confidence 358999999999999999999999998766 777888
Q ss_pred CCCCCCCccccccCCccccccccccCCccccCCCCCCCCCCCCcceEEEecCeEEEEEeCChhHHHHHHHHHHHHhhhhh
Q psy14210 82 SPPLSQSSQHIISGDSCELLHPVYTGGERCGPFSQSSTVPHNTSFQVIPVSSSILCTLAGNAADCVYWLHSLAKECKGYE 161 (312)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~dgVv~~~~~~~~~~~~~~~~KI~~I~d~i~~a~sG~~aD~q~l~~~lr~~~~~~~ 161 (312)
|++|++|++|++||+.+|++.++++++.+++.|+
T Consensus 59 ----------------------------------------------i~~i~~~i~~~~aG~~aD~~~l~~~~~~~~~~~~ 92 (242)
T 1ryp_E 59 ----------------------------------------------IVEIDRHIGCAMSGLTADARSMIEHARTAAVTHN 92 (242)
T ss_dssp ----------------------------------------------EEEEETTEEEEEEESGGGHHHHHHHHHHHHHHHH
T ss_pred ----------------------------------------------eEEEcCCEEEEEeecHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999
Q ss_pred hhcCCccCHHHHHHHHHHHHHHhccCCCCC------CCCCCcccceeeeEEecCCCCeEEEEcCCceEEecCeeeEccCh
Q psy14210 162 CKYRTGMTIRHAANLLVNMVRKYRTGNHSS------KIPNGLSFGTLMAAYDEILGPQLYMLDNTGLLIEGTKFCVGSGA 235 (312)
Q Consensus 162 ~~~g~~i~v~~la~~ls~~l~~~~~~~~~~------~rP~gls~~~IIaG~D~~~gp~Ly~iDpsGs~~e~~~~AiGsGs 235 (312)
++++++++++.+++++++++|.+++ +++ .|||+ +++||||||+.++|+||.+||+|++.+++++|+|+|+
T Consensus 93 ~~~~~~~~v~~la~~l~~~~~~~t~--~~~~~~~l~~RP~~--v~~lvaG~D~~~gp~Ly~idp~G~~~~~~~~aiGsgs 168 (242)
T 1ryp_E 93 LYYDEDINVESLTQSVCDLALRFGE--GASGEERLMSRPFG--VALLIAGHDADDGYQLFHAEPSGTFYRYNAKAIGSGS 168 (242)
T ss_dssp HHHSSCCCHHHHHHHHHTTTTCCBS--SCTTSCCCBSSCCS--EEEEEEEEETTTEEEEEEECTTSCEEEBSEEEESTTH
T ss_pred HHHCCCCCHHHHHHHHHHHHHHhcc--ccCcccccccCcce--EEEEEEEEeCCCCCEEEEECCCCCEeccCEEEECCCC
Confidence 9999999999999999999999998 777 89998 5789999995478999999999999999999999999
Q ss_pred HHHHHHHHhhCCCCCCHHHHHHHHHHHHHHHHHhcCcCCCcEEEEEEECCC-eEEeChhHHHHHHHHHhcCC
Q psy14210 236 EYAQAILDTDYRPDLSEEEAYALATSAIYHACRRDIHSGGCVRLYKINGQG-WQQVLSRDVKDIYNDRKEAP 306 (312)
Q Consensus 236 ~~a~~~Le~~y~~~ms~eEAi~la~kaL~~a~~rD~~sg~~ieI~iItk~G-~~~l~~~eI~~~l~~~~~~~ 306 (312)
.+++++||+.|+++||+|||++++++||..+.+| ..++++++|++|+++| +++++++||+++++.++++.
T Consensus 169 ~~a~~~Le~~~~~~ms~eea~~la~~al~~~~~~-~~sg~~i~v~vi~~~~~~~~~~~~ei~~~~~~~~~~~ 239 (242)
T 1ryp_E 169 EGAQAELLNEWHSSLTLKEAELLVLKILKQVMEE-KLDENNAQLSCITKQDGFKIYDNEKTAELIKELKEKE 239 (242)
T ss_dssp HHHHHHHHHHCCTTCCHHHHHHHHHHHHHHHCSS-CCCTTSEEEEEEETTTEEEECCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhccCCCHHHHHHHHHHHHHHHhhc-cCCCCcEEEEEEECCCCeEECCHHHHHHHHHHHhhhh
Confidence 9999999999999999999999999999999998 5689999999999998 68999999999999887654
No 15
>1ryp_N 20S proteasome; multicatalytic proteinase, protein degradation, antigen processing, hydrolase, protease; 1.90A {Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 1fnt_N* 1jd2_M* 1g65_M 1vsy_N 1z7q_N 2f16_M* 2fak_M* 2fny_M* 2gpl_M* 3d29_M* 3dy3_M* 3dy4_M* 3e47_M* 3gpj_M* 3gpt_M* 3gpw_M* 3hye_M* 3l5q_R 3mg0_M* 3mg4_M* ...
Probab=100.00 E-value=7.4e-46 Score=336.19 Aligned_cols=214 Identities=18% Similarity=0.211 Sum_probs=201.6
Q ss_pred cccCceEEEEEcCCeEEEEEcCCccCCcccccccccccccccCCCcccccCccccCCcccCCCccccccccccccccccC
Q psy14210 2 FITGTTTLGFRYPEGIILATDSRATANDLIVSQKLNKFCQSSLGDSCELLHPVYTGGERCGQSYSQRSHCVAETQQDHFL 81 (312)
Q Consensus 2 ~~~g~t~~~~~~~~gv~~~~d~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (312)
+.+|||+|||+++||||||+|+|+++|.++.++.++|
T Consensus 5 v~~Gtt~vgi~~~dgVvlaaD~r~~~g~~~~~~~~~K------------------------------------------- 41 (233)
T 1ryp_N 5 IVTGTSVISMKYDNGVIIAADNLGSYGSLLRFNGVER------------------------------------------- 41 (233)
T ss_dssp CEEECCEEEEEETTEEEEEEECCEEETTEEEESCCCC-------------------------------------------
T ss_pred ccCCceEEEEEECCEEEEEEcCccccCCeeecCCcCc-------------------------------------------
Confidence 5689999999999999999999999999999999899
Q ss_pred CCCCCCCccccccCCccccccccccCCccccCCCCCCCCCCCCcceEEEecCeEEEEEeCChhHHHHHHHHHHHHhhhhh
Q psy14210 82 SPPLSQSSQHIISGDSCELLHPVYTGGERCGPFSQSSTVPHNTSFQVIPVSSSILCTLAGNAADCVYWLHSLAKECKGYE 161 (312)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~dgVv~~~~~~~~~~~~~~~~KI~~I~d~i~~a~sG~~aD~q~l~~~lr~~~~~~~ 161 (312)
|++|++|++|+++|..+|++.|.++++.+++.|+
T Consensus 42 ----------------------------------------------I~~i~~~i~~~~aG~~aD~~~l~~~~~~~~~~~~ 75 (233)
T 1ryp_N 42 ----------------------------------------------LIPVGDNTVVGISGDISDMQHIERLLKDLVTENA 75 (233)
T ss_dssp ----------------------------------------------EEEETTTEEEEEEEEHHHHHHHHHHHHHHHHHHH
T ss_pred ----------------------------------------------eEEeCCCEEEEccccHHHHHHHHHHHHHHHHHHh
Confidence 8999999999999999999999999999999999
Q ss_pred h-----hcCCccCHHHHHHHHHHHHHHhccCCCCCCCCCCcccceeeeEEecCCCCeEEEEcCCceEEecCeeeEccChH
Q psy14210 162 C-----KYRTGMTIRHAANLLVNMVRKYRTGNHSSKIPNGLSFGTLMAAYDEILGPQLYMLDNTGLLIEGTKFCVGSGAE 236 (312)
Q Consensus 162 ~-----~~g~~i~v~~la~~ls~~l~~~~~~~~~~~rP~gls~~~IIaG~D~~~gp~Ly~iDpsGs~~e~~~~AiGsGs~ 236 (312)
+ +++++++++.+|+++++++|.++. +.|||+ +++||||||+.++|+||.+||+|++.++++.++|+|+.
T Consensus 76 ~~~~~~~~~~~~~v~~la~~l~~~ly~~r~----~~~P~~--v~~lvaG~D~~~gp~Ly~id~~G~~~~~~~~aiGsgs~ 149 (233)
T 1ryp_N 76 YDNPLADAEEALEPSYIFEYLATVMYQRRS----KMNPLW--NAIIVAGVQSNGDQFLRYVNLLGVTYSSPTLATGFGAH 149 (233)
T ss_dssp TTCTTTTTTTSCCHHHHHHHHHHHHHHHHH----TTCCCC--EEEEEEEECTTSCEEEEEEETTCCEECCSEEECTHHHH
T ss_pred hccchhhcCCCCCHHHHHHHHHHHHHHhcC----CCCCce--EEEEEEEEcCCCCEEEEEECCCcCeEEcCEEEECcCHH
Confidence 9 899999999999999999998765 579988 57899999985589999999999999999999999999
Q ss_pred HHHHHHHhhCCC-----CCCHHHHHHHHHHHHHHHHHhcCcCCCcEEEEEEECC-CeEEeChhHHHHHHHHHhcCCCCCC
Q psy14210 237 YAQAILDTDYRP-----DLSEEEAYALATSAIYHACRRDIHSGGCVRLYKINGQ-GWQQVLSRDVKDIYNDRKEAPPGGG 310 (312)
Q Consensus 237 ~a~~~Le~~y~~-----~ms~eEAi~la~kaL~~a~~rD~~sg~~ieI~iItk~-G~~~l~~~eI~~~l~~~~~~~~~~~ 310 (312)
+++++||+.|++ +||+|||++++++||..+.+||..++++++|++|+++ |+++++++||+++-|++++-..|-+
T Consensus 150 ~a~~~Le~~~~~~~~~~~ms~eea~~la~~al~~~~~rd~~sg~~i~v~vi~~~~g~~~~~~~~i~~~~w~~~~~~~~~~ 229 (233)
T 1ryp_N 150 MANPLLRKVVDRESDIPKTTVQVAEEAIVNAMRVLYYRDARSSRNFSLAIIDKNTGLTFKKNLQVENMKWDFAKDIKGYG 229 (233)
T ss_dssp HHHHHHTTTCSSGGGGGGCCHHHHHHHHHHHHHHHHHHBTTCCSEEEEEEEETTTEEEEEEEEECCSCCCGGGGGCCSSS
T ss_pred HHHHHHHHhhccccccCCCCHHHHHHHHHHHHHHHHHhcccCCCcEEEEEEECCCCeEEcChHhcccccchhhhhccCcC
Confidence 999999999999 9999999999999999999999999999999999999 9999999999999667877766543
No 16
>1q5q_H Proteasome beta-type subunit 1; proteasome assembly, Pro-peptide, inter-subunit contacts, RH erythropolis, hydrolase; 2.60A {Rhodococcus erythropolis} SCOP: d.153.1.4
Probab=100.00 E-value=9.1e-45 Score=329.68 Aligned_cols=204 Identities=27% Similarity=0.317 Sum_probs=192.9
Q ss_pred ceEEEEEcCCeEEEEEcCCccCCcccccccccccccccCCCcccccCccccCCcccCCCccccccccccccccccCCCCC
Q psy14210 6 TTTLGFRYPEGIILATDSRATANDLIVSQKLNKFCQSSLGDSCELLHPVYTGGERCGQSYSQRSHCVAETQQDHFLSPPL 85 (312)
Q Consensus 6 ~t~~~~~~~~gv~~~~d~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (312)
||+|||+++||||||+|+|+++|.++.+++++|
T Consensus 1 tT~vgi~~~dgVVlaaD~r~~~g~l~~~~~~~K----------------------------------------------- 33 (235)
T 1q5q_H 1 TTIVALTYKGGVLLAGDRRATQGNLIASRDVEK----------------------------------------------- 33 (235)
T ss_dssp CCEEEEECSSCEEEEECCCEEETTEEEESCCCC-----------------------------------------------
T ss_pred CeEEEEEECCEEEEEECCCCCcCCEEecCCcCc-----------------------------------------------
Confidence 799999999999999999999999999999999
Q ss_pred CCCccccccCCccccccccccCCccccCCCCCCCCCCCCcceEEEecCeEEEEEeCChhHHHHHHHHHHHHhhhhhhhcC
Q psy14210 86 SQSSQHIISGDSCELLHPVYTGGERCGPFSQSSTVPHNTSFQVIPVSSSILCTLAGNAADCVYWLHSLAKECKGYECKYR 165 (312)
Q Consensus 86 ~~~~~~~~~~~~~~~~~~~~~dgVv~~~~~~~~~~~~~~~~KI~~I~d~i~~a~sG~~aD~q~l~~~lr~~~~~~~~~~g 165 (312)
|++|+++++|++||+.+|++.|+++++.+++.|+++++
T Consensus 34 ------------------------------------------I~~i~~~i~~~~aG~~aD~~~l~~~~~~~~~~~~~~~~ 71 (235)
T 1q5q_H 34 ------------------------------------------VYVTDEYSAAGIAGTAGIAIELVRLFAVELEHYEKIEG 71 (235)
T ss_dssp ------------------------------------------EEEEETTEEEEEEECHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred ------------------------------------------EEEeCCcEEEEcCCcHHHHHHHHHHHHHHHHHhHHHhC
Confidence 89999999999999999999999999999999999999
Q ss_pred CccCHHHHHHHHHHHHHHhccCCCCCCCCCCcccceeeeEEecCCC-----CeEEEEcCCceEEec--CeeeEccChHHH
Q psy14210 166 TGMTIRHAANLLVNMVRKYRTGNHSSKIPNGLSFGTLMAAYDEILG-----PQLYMLDNTGLLIEG--TKFCVGSGAEYA 238 (312)
Q Consensus 166 ~~i~v~~la~~ls~~l~~~~~~~~~~~rP~gls~~~IIaG~D~~~g-----p~Ly~iDpsGs~~e~--~~~AiGsGs~~a 238 (312)
++++++.+|+++++++|.+++ ++ +|||+ +++||||||+.++ |+||++||+|+++++ ++.|+|+|+.++
T Consensus 72 ~~~~v~~la~~l~~~~~~~~~--~~-~rp~~--v~~lvaG~D~~~g~~~~~p~Ly~idp~G~~~~~~~~~~aiGsgs~~a 146 (235)
T 1q5q_H 72 VPLTFDGKANRLASMVRGNLG--AA-MQGLA--VVPLLVGYDLDADDESRAGRIVSYDVVGGRYEERAGYHAVGSGSLFA 146 (235)
T ss_dssp SCCCHHHHHHHHHHHHHTTHH--HH-TTTCC--EEEEEEEECTTCSSTTSCEEEEEECTTSCEEECCSSEEEESTTHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHHH--hh-hcccc--eEEEEEEEECCCCccCCCCEEEEECCCCceEEeCCCeEEECCCHHHH
Confidence 999999999999999999887 43 79988 5689999998546 999999999999999 899999999999
Q ss_pred HHHHHhhCCCCCCHHHHHHHHHHHHHHHHHhcCcCCCc--E-----EEEEEECCCeEEeChhHHHHHHHHHh
Q psy14210 239 QAILDTDYRPDLSEEEAYALATSAIYHACRRDIHSGGC--V-----RLYKINGQGWQQVLSRDVKDIYNDRK 303 (312)
Q Consensus 239 ~~~Le~~y~~~ms~eEAi~la~kaL~~a~~rD~~sg~~--i-----eI~iItk~G~~~l~~~eI~~~l~~~~ 303 (312)
+++||+.|+++||+|||++++++||..++++|..+++. + +|++|+++|+++++++|+++++..++
T Consensus 147 ~~~Le~~~~~~ms~eeA~~la~~al~~a~~~d~~sg~~~~i~~~~~ev~vi~~~g~~~l~~~ei~~~~~~~~ 218 (235)
T 1q5q_H 147 KSALKKIYSPDSDEETALRAAIESLYDAADDDSATGGPDLTRGIYPTAVTITQAGAVHVSEETTSELARRIV 218 (235)
T ss_dssp HHHHHHHCCTTCCHHHHHHHHHHHHHHHHHHCTTTCCCBTTTTBCCEEEEEETTEEEECCHHHHHHHHHHHH
T ss_pred HHHHHhhcCCCCCHHHHHHHHHHHHHHHHhhCcccCCcccccccccEEEEEeCCCeEEeCHHHHHHHHHHHH
Confidence 99999999999999999999999999999999887753 2 99999999999999999999998875
No 17
>1iru_D 20S proteasome; cell cycle, immune response, proteolysis, ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4 PDB: 3unf_C* 3une_C* 3unh_C 3unb_C*
Probab=100.00 E-value=3.9e-45 Score=334.60 Aligned_cols=209 Identities=16% Similarity=0.320 Sum_probs=196.5
Q ss_pred cccCceEEEEEcCCeEEEEEcCCccCCcccccccccccccccCCCcccccCccccCCcccCCCccccccccccccccccC
Q psy14210 2 FITGTTTLGFRYPEGIILATDSRATANDLIVSQKLNKFCQSSLGDSCELLHPVYTGGERCGQSYSQRSHCVAETQQDHFL 81 (312)
Q Consensus 2 ~~~g~t~~~~~~~~gv~~~~d~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (312)
+.+|||+|||+++||||||+|+|+++| ++.+++++|
T Consensus 26 v~~Gtt~vgi~~~dgVvlaaD~r~~~~-l~~~~~~~K------------------------------------------- 61 (248)
T 1iru_D 26 VKKGSTAVGVRGRDIVVLGVEKKSVAK-LQDERTVRK------------------------------------------- 61 (248)
T ss_dssp HHTSCCEEEECCSSEEEEEECCCCCCS-SSCGGGGCS-------------------------------------------
T ss_pred HHcCCCEEEEEeCCEEEEEEeeccccc-CccCCCCCc-------------------------------------------
Confidence 357999999999999999999999997 788888888
Q ss_pred CCCCCCCccccccCCccccccccccCCccccCCCCCCCCCCCCcceEEEecCeEEEEEeCChhHHHHHHHHHHHHhhhhh
Q psy14210 82 SPPLSQSSQHIISGDSCELLHPVYTGGERCGPFSQSSTVPHNTSFQVIPVSSSILCTLAGNAADCVYWLHSLAKECKGYE 161 (312)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~dgVv~~~~~~~~~~~~~~~~KI~~I~d~i~~a~sG~~aD~q~l~~~lr~~~~~~~ 161 (312)
||+|++|++|+++|+.+|++.+.++++.+++.|+
T Consensus 62 ----------------------------------------------I~~i~~~i~~~~aG~~aD~~~l~~~~~~~~~~~~ 95 (248)
T 1iru_D 62 ----------------------------------------------ICALDDNVCMAFAGLTADARIVINRARVECQSHR 95 (248)
T ss_dssp ----------------------------------------------EEESSSSCEEEEEECHHHHHHHHHHHHHHHHHHH
T ss_pred ----------------------------------------------EEEEcCCEEEEEeecHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999
Q ss_pred hhcCCccCHHHHHHHHHHHHHHhccCCCCCCCCCCcccceeeeEEecCCCCeEEEEcCCceEEecCeeeEccChHHHHHH
Q psy14210 162 CKYRTGMTIRHAANLLVNMVRKYRTGNHSSKIPNGLSFGTLMAAYDEILGPQLYMLDNTGLLIEGTKFCVGSGAEYAQAI 241 (312)
Q Consensus 162 ~~~g~~i~v~~la~~ls~~l~~~~~~~~~~~rP~gls~~~IIaG~D~~~gp~Ly~iDpsGs~~e~~~~AiGsGs~~a~~~ 241 (312)
++++++++++.+|+++++++|.+++ +++.|||+ +++||||||++++|+||.+||+|++.++++.++|+|+.+++++
T Consensus 96 ~~~~~~~~v~~la~~l~~~~~~~~~--~~~~rp~~--v~~lvaG~D~~~gp~Ly~idp~G~~~~~~~~aiG~gs~~a~~~ 171 (248)
T 1iru_D 96 LTVEDPVTVEYITRYIASLKQRYTQ--SNGRRPFG--ISALIVGFDFDGTPRLYQTDPSGTYHAWKANAIGRGAKSVREF 171 (248)
T ss_dssp HHSSSCCCHHHHHHHHHHHHHHTTS--BTTBCCCC--EEEEEEEECSSSCEEEEEECTTSCEEEBSEEEESTTHHHHHHH
T ss_pred HHHCCCCCHHHHHHHHHHHHHHHhc--cCCccccc--EEEEEEEEeCCCCcEEEEEcCCCcEEEeeEEEECCCcHHHHHH
Confidence 9999999999999999999999999 78899988 5789999995479999999999999999999999999999999
Q ss_pred HHhhCCCCC--CHHHHHHHHHHHHHHHHHhcCcCCCcEEEEEEECCC-eEEeChhHHHHHHHHHhcCCC
Q psy14210 242 LDTDYRPDL--SEEEAYALATSAIYHACRRDIHSGGCVRLYKINGQG-WQQVLSRDVKDIYNDRKEAPP 307 (312)
Q Consensus 242 Le~~y~~~m--s~eEAi~la~kaL~~a~~rD~~sg~~ieI~iItk~G-~~~l~~~eI~~~l~~~~~~~~ 307 (312)
||+.|+++| |+|||++++++||..+.+ .++++++|++|+++| +++++++||++++..++++..
T Consensus 172 Le~~~~~~m~~s~eea~~la~~al~~~~~---~sg~~i~v~vi~~~g~~~~l~~~ei~~~~~~~~~~~~ 237 (248)
T 1iru_D 172 LEKNYTDEAIETDDLTIKLVIKALLEVVQ---SGGKNIELAVMRRDQSLKILNPEEIEKYVAEIEKEKE 237 (248)
T ss_dssp HTTTCCSSTTCSHHHHHHHHHHHHHTTSC---TTSTTCCEEEEESSSCEECCCHHHHHHHTTTTTTTTT
T ss_pred HHHhhcccccCCHHHHHHHHHHHHHHHHc---CCCCcEEEEEEECCCcEEECCHHHHHHHHHHHHhcch
Confidence 999999999 999999999999999886 468999999999998 999999999999998865543
No 18
>1iru_G 20S proteasome; cell cycle, immune response, proteolysis, ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4 PDB: 3unb_F* 3une_F 3unf_F* 3unh_F
Probab=100.00 E-value=8.4e-45 Score=333.59 Aligned_cols=208 Identities=16% Similarity=0.207 Sum_probs=195.5
Q ss_pred cccCceEEEEEcCCeEEEEEcCCccCCcccccccccccccccCCCcccccCccccCCcccCCCccccccccccccccccC
Q psy14210 2 FITGTTTLGFRYPEGIILATDSRATANDLIVSQKLNKFCQSSLGDSCELLHPVYTGGERCGQSYSQRSHCVAETQQDHFL 81 (312)
Q Consensus 2 ~~~g~t~~~~~~~~gv~~~~d~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (312)
+.+|||+|||+++||||||+|+|+++|.++. +.++|
T Consensus 30 v~~Gtt~vgi~~~dgVvlaaD~r~~~g~~~~-~~~~K------------------------------------------- 65 (254)
T 1iru_G 30 VENSSTAIGIRCKDGVVFGVEKLVLSKLYEE-GSNKR------------------------------------------- 65 (254)
T ss_dssp HHTSCCEEEEECSSBEEEEEEEECSCTTBCT-TTTCC-------------------------------------------
T ss_pred HhcCCCEEEEEECCEEEEEEecccCCCCcCc-CcCCc-------------------------------------------
Confidence 3579999999999999999999999987774 67777
Q ss_pred CCCCCCCccccccCCccccccccccCCccccCCCCCCCCCCCCcceEEEecCeEEEEEeCChhHHHHHHHHHHHHhhhhh
Q psy14210 82 SPPLSQSSQHIISGDSCELLHPVYTGGERCGPFSQSSTVPHNTSFQVIPVSSSILCTLAGNAADCVYWLHSLAKECKGYE 161 (312)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~dgVv~~~~~~~~~~~~~~~~KI~~I~d~i~~a~sG~~aD~q~l~~~lr~~~~~~~ 161 (312)
||+|++|++|+++|..+|++.|+++++.+++.|+
T Consensus 66 ----------------------------------------------I~~i~~~i~~~~aG~~aD~~~l~~~~~~~~~~~~ 99 (254)
T 1iru_G 66 ----------------------------------------------LFNVDRHVGMAVAGLLADARSLADIAREEASNFR 99 (254)
T ss_dssp ----------------------------------------------EEEEETTEEEEEEECHHHHHHHHHHHHHHHHHHH
T ss_pred ----------------------------------------------EEEECCCEEEEEecChHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999
Q ss_pred hhcCCccCHHHHHHHHHHHHHHhccCCCCCCCCCCcccceeeeEEecCCCCeEEEEcCCceEEecCeeeEccChHHHHHH
Q psy14210 162 CKYRTGMTIRHAANLLVNMVRKYRTGNHSSKIPNGLSFGTLMAAYDEILGPQLYMLDNTGLLIEGTKFCVGSGAEYAQAI 241 (312)
Q Consensus 162 ~~~g~~i~v~~la~~ls~~l~~~~~~~~~~~rP~gls~~~IIaG~D~~~gp~Ly~iDpsGs~~e~~~~AiGsGs~~a~~~ 241 (312)
++++++++++.+++++++++|.+++ +++.|||+ +++||||||+.++|+||++||+|++.++++.|+|+|+.+++++
T Consensus 100 ~~~~~~~~v~~la~~l~~~~~~~~~--~~~~rP~~--v~~lvaG~D~~~gp~Ly~idp~G~~~~~~~~aiGsgs~~a~~~ 175 (254)
T 1iru_G 100 SNFGYNIPLKHLADRVAMYVHAYTL--YSAVRPFG--CSFMLGSYSVNDGAQLYMIDPSGVSYGYWGCAIGKARQAAKTE 175 (254)
T ss_dssp HHHSSCCCHHHHHHHHHHHHHHTTS--BSSBCCCS--EEEEEEEEETTTEEEEEEECTTCCEEEBSEEEESTTHHHHHHH
T ss_pred HHhCCCCCHHHHHHHHHHHHHHhcc--ccccccce--EEEEEEEEeCCCCcEEEEEcCCCCEEeeeeEEecCccHHHHHH
Confidence 9999999999999999999999998 78899988 5789999995478999999999999999999999999999999
Q ss_pred HHhhCCCCCCHHHHHHHHHHHHHHHHHhcCcCCCcEEEEEEECC--C-eEEeChhHHHHHHHHHh
Q psy14210 242 LDTDYRPDLSEEEAYALATSAIYHACRRDIHSGGCVRLYKINGQ--G-WQQVLSRDVKDIYNDRK 303 (312)
Q Consensus 242 Le~~y~~~ms~eEAi~la~kaL~~a~~rD~~sg~~ieI~iItk~--G-~~~l~~~eI~~~l~~~~ 303 (312)
||+.|+++||+|||++++++||+.+.++|..++.+++|++|+++ | +++++++|+++++...+
T Consensus 176 Le~~~~~~ms~eea~~la~~al~~~~~~~~~~~~~iev~vi~~~~~g~~~~l~~~~i~~~~~~~~ 240 (254)
T 1iru_G 176 IEKLQMKEMTCRDIVKEVAKIIYIVHDEVKDKAFELELSWVGELTNGRHEIVPKDIREEAEKYAK 240 (254)
T ss_dssp HTTSCGGGCCHHHHHHHHHHHHHHHSCSSSSCCEEEEEEECBTTTTTCCEECCHHHHHHHHHHHH
T ss_pred HHHhccCCCCHHHHHHHHHHHHHHHHhhccCCCCcEEEEEEEcCCCCCeEECCHHHHHHHHHHHH
Confidence 99999999999999999999999998888768889999999987 6 99999999999998764
No 19
>1iru_N 20S proteasome; cell cycle, immune response, proteolysis, ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4 PDB: 3unb_M* 3une_M 3unf_M* 3unh_M
Probab=100.00 E-value=2e-45 Score=330.10 Aligned_cols=209 Identities=20% Similarity=0.223 Sum_probs=196.5
Q ss_pred cccCceEEEEEcCCeEEEEEcCCccCCcccccccccccccccCCCcccccCccccCCcccCCCccccccccccccccccC
Q psy14210 2 FITGTTTLGFRYPEGIILATDSRATANDLIVSQKLNKFCQSSLGDSCELLHPVYTGGERCGQSYSQRSHCVAETQQDHFL 81 (312)
Q Consensus 2 ~~~g~t~~~~~~~~gv~~~~d~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (312)
+.+|||+|||+++||||||+|+|+++|.++.+++++|
T Consensus 5 v~~Gtt~vgi~~~dgVvlaaD~r~~~g~~~~~~~~~K------------------------------------------- 41 (219)
T 1iru_N 5 MVTGTSVLGVKFEGGVVIAADMLGSYGSLARFRNISR------------------------------------------- 41 (219)
T ss_dssp CSEECCCEEEEETTEEEEEEECCEEETTEEEECSCCC-------------------------------------------
T ss_pred ccCCceEEEEEeCCEEEEEECCccccCcEEecCCCCc-------------------------------------------
Confidence 5689999999999999999999999999999999888
Q ss_pred CCCCCCCccccccCCccccccccccCCccccCCCCCCCCCCCCcceEEEecCeEEEEEeCChhHHHHHHHHHHHHhhhhh
Q psy14210 82 SPPLSQSSQHIISGDSCELLHPVYTGGERCGPFSQSSTVPHNTSFQVIPVSSSILCTLAGNAADCVYWLHSLAKECKGYE 161 (312)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~dgVv~~~~~~~~~~~~~~~~KI~~I~d~i~~a~sG~~aD~q~l~~~lr~~~~~~~ 161 (312)
|++|++|++|+++|..+|++.|.++++.+++.|+
T Consensus 42 ----------------------------------------------i~~i~~~i~~~~aG~~aD~~~l~~~~~~~~~~~~ 75 (219)
T 1iru_N 42 ----------------------------------------------IMRVNNSTMLGASGDYADFQYLKQVLGQMVIDEE 75 (219)
T ss_dssp ----------------------------------------------EEEETTTEEEEEEEEHHHHHHHHHHHHHHHHHHH
T ss_pred ----------------------------------------------eEEeCCCEEEEeccCHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999
Q ss_pred h-hcCCccCHHHHHHHHHHHHHHhccCCCCCCCCCCcccceeeeEEecCCCCeEEEEcCCceEEecCeeeEccChHHHHH
Q psy14210 162 C-KYRTGMTIRHAANLLVNMVRKYRTGNHSSKIPNGLSFGTLMAAYDEILGPQLYMLDNTGLLIEGTKFCVGSGAEYAQA 240 (312)
Q Consensus 162 ~-~~g~~i~v~~la~~ls~~l~~~~~~~~~~~rP~gls~~~IIaG~D~~~gp~Ly~iDpsGs~~e~~~~AiGsGs~~a~~ 240 (312)
+ +++++++++.+|+++++++|.++. +.|||+ +++||||||+ ++|+||.+||+|++.++++.++|+|+.++++
T Consensus 76 ~~~~~~~~~v~~la~~l~~~ly~~r~----~~~P~~--v~~lvaG~D~-~gp~Ly~id~~G~~~~~~~~aiGsgs~~a~~ 148 (219)
T 1iru_N 76 LLGDGHSYSPRAIHSWLTRAMYSRRS----KMNPLW--NTMVIGGYAD-GESFLGYVDMLGVAYEAPSLATGYGAYLAQP 148 (219)
T ss_dssp HHCSSCCCCHHHHHHHHHHHHHHHHH----TTCCCC--EEEEEEEEET-TEEEEEEECSSCCEEECSEEECTTHHHHTHH
T ss_pred HHHcCCCCCHHHHHHHHHHHHHHhcc----cCCCce--EEEEEEEEEC-CCCEEEEECCCCCeEECCeEEECccHHHHHH
Confidence 8 999999999999999999998764 579988 5789999998 6999999999999999999999999999999
Q ss_pred HHHhhCCC--CCCHHHHHHHHHHHHHHHHHhcCcCCCcEEEEEEECCCeEEeChhHHHHHHHHHhcCCC
Q psy14210 241 ILDTDYRP--DLSEEEAYALATSAIYHACRRDIHSGGCVRLYKINGQGWQQVLSRDVKDIYNDRKEAPP 307 (312)
Q Consensus 241 ~Le~~y~~--~ms~eEAi~la~kaL~~a~~rD~~sg~~ieI~iItk~G~~~l~~~eI~~~l~~~~~~~~ 307 (312)
+||+.|++ +||+|||++++++||..+.+||..++++++|++|+++|++.++++|++.. |++++...
T Consensus 149 ~Le~~~~~~~~mt~eea~~l~~~al~~~~~~d~~sg~~i~v~vi~~~g~~~~~~~~i~~~-~~~~~~~~ 216 (219)
T 1iru_N 149 LLREVLEKQPVLSQTEARDLVERCMRVLYYRDARSYNRFQTATVTEKGVEIEGPLSTETN-WDIAHMIS 216 (219)
T ss_dssp HHHHHHTSCSCCCHHHHHHHHHHHHHHHHHHBTTCCSCEEEEEEETTEEEEEEEECCCCC-CGGGGCSC
T ss_pred HHHhhcCCCCCCCHHHHHHHHHHHHHHHHHhcCcCCCcEEEEEEcCCCEEEcCCeeccch-hhHHHhhc
Confidence 99999999 99999999999999999999999999999999999999999999998887 45655443
No 20
>1iru_F 20S proteasome; cell cycle, immune response, proteolysis, ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4 PDB: 3unb_E* 3une_E 3unf_E* 3unh_E
Probab=100.00 E-value=4.2e-45 Score=337.36 Aligned_cols=210 Identities=17% Similarity=0.277 Sum_probs=195.8
Q ss_pred cccCceEEEEEcCCeEEEEEcCCccCCcccccccccccccccCCCcccccCccccCCcccCCCccccccccccccccccC
Q psy14210 2 FITGTTTLGFRYPEGIILATDSRATANDLIVSQKLNKFCQSSLGDSCELLHPVYTGGERCGQSYSQRSHCVAETQQDHFL 81 (312)
Q Consensus 2 ~~~g~t~~~~~~~~gv~~~~d~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (312)
+.+|||+|||+++||||||+|+|+++| +. +..+|
T Consensus 29 v~~Gtt~vgi~~~dgVVlaaD~r~~~g-l~--~~~~K------------------------------------------- 62 (263)
T 1iru_F 29 VKQGSATVGLKSKTHAVLVALKRAQSE-LA--AHQKK------------------------------------------- 62 (263)
T ss_dssp HHHSCCEEEEECSSEEEEEEECCCSST-TB--CCCCC-------------------------------------------
T ss_pred HHcCCcEEEEEeCCEEEEEEecccccc-cc--cchhc-------------------------------------------
Confidence 357999999999999999999999997 32 34455
Q ss_pred CCCCCCCccccccCCccccccccccCCccccCCCCCCCCCCCCcceEEEecCeEEEEEeCChhHHHHHHHHHHHHhhhhh
Q psy14210 82 SPPLSQSSQHIISGDSCELLHPVYTGGERCGPFSQSSTVPHNTSFQVIPVSSSILCTLAGNAADCVYWLHSLAKECKGYE 161 (312)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~dgVv~~~~~~~~~~~~~~~~KI~~I~d~i~~a~sG~~aD~q~l~~~lr~~~~~~~ 161 (312)
|++|++|++|++||+.+|++.|.++++.+++.|+
T Consensus 63 ----------------------------------------------I~~i~~~i~~~~aG~~aD~~~l~~~~~~~~~~~~ 96 (263)
T 1iru_F 63 ----------------------------------------------ILHVDNHIGISIAGLTADARLLCNFMRQECLDSR 96 (263)
T ss_dssp ----------------------------------------------EEEEETTEEEEEEECHHHHHHHHHHHHHHHHHHH
T ss_pred ----------------------------------------------EEEEcCCEEEEEeCCHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999
Q ss_pred hhcCCccCHHHHHHHHHHHHHHhccCCCCCCCCCCcccceeeeEEecCCCCeEEEEcCCceEEecCeeeEccChHHHHHH
Q psy14210 162 CKYRTGMTIRHAANLLVNMVRKYRTGNHSSKIPNGLSFGTLMAAYDEILGPQLYMLDNTGLLIEGTKFCVGSGAEYAQAI 241 (312)
Q Consensus 162 ~~~g~~i~v~~la~~ls~~l~~~~~~~~~~~rP~gls~~~IIaG~D~~~gp~Ly~iDpsGs~~e~~~~AiGsGs~~a~~~ 241 (312)
++++++++++.+++++++++|.+++ +++.|||+ +++||||||+ ++|+||++||+|++++++++|+|+|+.+++++
T Consensus 97 ~~~~~~i~v~~la~~l~~~l~~~t~--~~~~RP~~--v~~lvaG~D~-~gp~Ly~idp~G~~~~~~~~aiGsgs~~a~~~ 171 (263)
T 1iru_F 97 FVFDRPLPVSRLVSLIGSKTQIPTQ--RYGRRPYG--VGLLIAGYDD-MGPHIFQTCPSANYFDCRAMSIGARSQSARTY 171 (263)
T ss_dssp HHHSSCCCHHHHHHHHHHHHHHHHH--BTTCCCCC--EEEEEEEEET-TEEEEEEECSSSCEEEESEEEESTTHHHHHHH
T ss_pred HHcCCCCCHHHHHHHHHHHHHHhhc--ccccccce--EEEEEEEEcC-CCCEEEEECCCCCEEEeeEEEcCcccHHHHHH
Confidence 9999999999999999999999998 77899988 5789999998 78999999999999999999999999999999
Q ss_pred HHhhCCC--CCCHHHHHHHHHHHHHHHHHhc-CcCCCcEEEEEEECC-CeEEeChhHHHHHHHHHhcCCCC
Q psy14210 242 LDTDYRP--DLSEEEAYALATSAIYHACRRD-IHSGGCVRLYKINGQ-GWQQVLSRDVKDIYNDRKEAPPG 308 (312)
Q Consensus 242 Le~~y~~--~ms~eEAi~la~kaL~~a~~rD-~~sg~~ieI~iItk~-G~~~l~~~eI~~~l~~~~~~~~~ 308 (312)
||+.|++ +||+|||++++++||..+++|| ..++++++|++|+++ ++++++++||++++..+++.+++
T Consensus 172 Le~~~~~~~~ms~eea~~la~~al~~~~~rd~~~sg~~iev~vi~~~~~~~~l~~~ei~~~~~~~~~~~~~ 242 (263)
T 1iru_F 172 LERHMSEFMECNLNELVKHGLRALRETLPAEQDLTTKNVSIGIVGKDLEFTIYDDDDVSPFLEGLEERPQR 242 (263)
T ss_dssp HHHHHHHHTTCCHHHHHHHHHHHHHTTSCTTCCCCTTTEEEEEEETTEEEEEECSGGGHHHHTTCCCCCC-
T ss_pred HHHHhcccCCCCHHHHHHHHHHHHHHHHhccccCCCCcEEEEEEECCCCeEECCHHHHHHHHHHHhccccc
Confidence 9999998 9999999999999999999999 478999999999998 79999999999999999766653
No 21
>1j2p_A Alpha-ring, proteasome alpha subunit; hydrolase; 2.60A {Archaeoglobus fulgidus} SCOP: d.153.1.4 PDB: 1j2q_A*
Probab=100.00 E-value=4e-44 Score=327.43 Aligned_cols=206 Identities=21% Similarity=0.343 Sum_probs=194.2
Q ss_pred cccCceEEEEEcCCeEEEEEcCCccCCcccccccccccccccCCCcccccCccccCCcccCCCccccccccccccccccC
Q psy14210 2 FITGTTTLGFRYPEGIILATDSRATANDLIVSQKLNKFCQSSLGDSCELLHPVYTGGERCGQSYSQRSHCVAETQQDHFL 81 (312)
Q Consensus 2 ~~~g~t~~~~~~~~gv~~~~d~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (312)
+.+|||+|||+++||||||+|+|++++ ++.+++.+|
T Consensus 31 v~~Gtt~vgi~~~dgVvlaaD~r~~~~-l~~~~~~~K------------------------------------------- 66 (246)
T 1j2p_A 31 VKRGATAIGIKCKEGVILIADKRVGSK-LLEKDTIEK------------------------------------------- 66 (246)
T ss_dssp HHTSCCEEEEEETTEEEEEEECCCSCT-TBCGGGCCS-------------------------------------------
T ss_pred HHcCCcEEEEEECCEEEEEEeccCCcc-ccccCccCc-------------------------------------------
Confidence 357999999999999999999999995 666777778
Q ss_pred CCCCCCCccccccCCccccccccccCCccccCCCCCCCCCCCCcceEEEecCeEEEEEeCChhHHHHHHHHHHHHhhhhh
Q psy14210 82 SPPLSQSSQHIISGDSCELLHPVYTGGERCGPFSQSSTVPHNTSFQVIPVSSSILCTLAGNAADCVYWLHSLAKECKGYE 161 (312)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~dgVv~~~~~~~~~~~~~~~~KI~~I~d~i~~a~sG~~aD~q~l~~~lr~~~~~~~ 161 (312)
|++|++|++|+++|..+|++.+.++++.+++.|+
T Consensus 67 ----------------------------------------------I~~i~~~i~~~~aG~~aD~~~l~~~~~~~~~~~~ 100 (246)
T 1j2p_A 67 ----------------------------------------------IYKIDEHICAATSGLVADARVLIDRARIEAQINR 100 (246)
T ss_dssp ----------------------------------------------EEECSSSEEEEEEECHHHHHHHHHHHHHHHHHHH
T ss_pred ----------------------------------------------EEEECCCEEEEEeEccHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999
Q ss_pred hhcCCccCHHHHHHHHHHHHHHhccCCCCCCCCCCcccceeeeEEecCCCCeEEEEcCCceEEecCeeeEccChHHHHHH
Q psy14210 162 CKYRTGMTIRHAANLLVNMVRKYRTGNHSSKIPNGLSFGTLMAAYDEILGPQLYMLDNTGLLIEGTKFCVGSGAEYAQAI 241 (312)
Q Consensus 162 ~~~g~~i~v~~la~~ls~~l~~~~~~~~~~~rP~gls~~~IIaG~D~~~gp~Ly~iDpsGs~~e~~~~AiGsGs~~a~~~ 241 (312)
++++++++++.+|+++++++|.+++ +++.|||+ +++|||||| ++|+||.+||+|++.+++++|+|+|+.+++++
T Consensus 101 ~~~~~~~~v~~la~~l~~~~~~y~~--~~~~rp~~--v~~lvaG~D--~gp~Ly~idp~G~~~~~~~~aiGsgs~~a~~~ 174 (246)
T 1j2p_A 101 LTYDIPITVKELAKKICDFKQQYTQ--YGGVRPFG--VSLLIAGVN--EVPKLYETDPSGALLEYKATAIGMGRMAVTEF 174 (246)
T ss_dssp HHSSSCCCHHHHHHHHHHHHHHTTS--BTTBCCCC--EEEEEEEES--SSEEEEEECTTCCEEEBSEEEESTTHHHHHHH
T ss_pred HHhCCCCCHHHHHHHHHHHHHHHhc--ccCccccc--EEEEEEEEC--CCCEEEEECCCceEEeeeEEEECCCcHHHHHH
Confidence 9999999999999999999999998 78899988 578999999 68999999999999999999999999999999
Q ss_pred HHhhCCCCCCHHHHHHHHHHHHHHHHHhcCcCCCcEEEEEEE-C-CCeEEeChhHHHHHHHHHhc
Q psy14210 242 LDTDYRPDLSEEEAYALATSAIYHACRRDIHSGGCVRLYKIN-G-QGWQQVLSRDVKDIYNDRKE 304 (312)
Q Consensus 242 Le~~y~~~ms~eEAi~la~kaL~~a~~rD~~sg~~ieI~iIt-k-~G~~~l~~~eI~~~l~~~~~ 304 (312)
||+.|+++||+|||++++++||..+.++ ..++++++|++|+ + +|+++++++|+++++..+.+
T Consensus 175 Le~~~~~~ms~eea~~la~~al~~~~~~-~~sg~~i~v~vi~~~~~~~~~l~~~ei~~~~~~~~~ 238 (246)
T 1j2p_A 175 FEKEYRDDLSFDDAMVLGLVAMGLSIES-ELVPENIEVGYVKVDDRTFKEVSPEELKPYVERANE 238 (246)
T ss_dssp HHHHCCTTCCHHHHHHHHHHHHHHHHTS-CCCGGGEEEEEEETTTCCCEECCHHHHHHHHHHHHH
T ss_pred HHHHhccCCCHHHHHHHHHHHHHHHhhc-cCCCCcEEEEEEEcCCCceEECCHHHHHHHHHHHHH
Confidence 9999999999999999999999999998 6789999999999 6 58999999999999988753
No 22
>1iru_E 20S proteasome; cell cycle, immune response, proteolysis, ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4 PDB: 3unb_D* 3une_D 3unf_D* 3unh_D
Probab=100.00 E-value=1.1e-44 Score=330.04 Aligned_cols=204 Identities=21% Similarity=0.362 Sum_probs=192.9
Q ss_pred cccCceEEEEEcCCeEEEEEcCCccCCcccccccccccccccCCCcccccCccccCCcccCCCccccccccccccccccC
Q psy14210 2 FITGTTTLGFRYPEGIILATDSRATANDLIVSQKLNKFCQSSLGDSCELLHPVYTGGERCGQSYSQRSHCVAETQQDHFL 81 (312)
Q Consensus 2 ~~~g~t~~~~~~~~gv~~~~d~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (312)
+.+|||+|||+++||||||+|+|+++|.++ +++++|
T Consensus 31 v~~Gtt~vgi~~~dgVvlaaD~r~~~g~~~-~~~~~K------------------------------------------- 66 (241)
T 1iru_E 31 IKLGSTAIGIQTSEGVCLAVEKRITSPLME-PSSIEK------------------------------------------- 66 (241)
T ss_dssp HTTSCCEEEEEETTEEEEEEECCCCCTTBC-TTSCCS-------------------------------------------
T ss_pred HHcCCcEEEEEcCCEEEEEEecccCCcCcC-ccccce-------------------------------------------
Confidence 357999999999999999999999998776 778888
Q ss_pred CCCCCCCccccccCCccccccccccCCccccCCCCCCCCCCCCcceEEEecCeEEEEEeCChhHHHHHHHHHHHHhhhhh
Q psy14210 82 SPPLSQSSQHIISGDSCELLHPVYTGGERCGPFSQSSTVPHNTSFQVIPVSSSILCTLAGNAADCVYWLHSLAKECKGYE 161 (312)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~dgVv~~~~~~~~~~~~~~~~KI~~I~d~i~~a~sG~~aD~q~l~~~lr~~~~~~~ 161 (312)
|++|++|++|++||..+|++.+.++++.+++.|+
T Consensus 67 ----------------------------------------------i~~i~~~i~~~~aG~~aD~~~l~~~~~~~~~~~~ 100 (241)
T 1iru_E 67 ----------------------------------------------IVEIDAHIGCAMSGLIADAKTLIDKARVETQNHW 100 (241)
T ss_dssp ----------------------------------------------EEEEETTEEEEEEECHHHHHHHHHHHHHHHHHHH
T ss_pred ----------------------------------------------EEEEcCCEEEEEeeChHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999
Q ss_pred hhcCCccCHHHHHHHHHHHHHHhccCCCCC-----CCCCCcccceeeeEEecCCCCeEEEEcCCceEEecCeeeEccChH
Q psy14210 162 CKYRTGMTIRHAANLLVNMVRKYRTGNHSS-----KIPNGLSFGTLMAAYDEILGPQLYMLDNTGLLIEGTKFCVGSGAE 236 (312)
Q Consensus 162 ~~~g~~i~v~~la~~ls~~l~~~~~~~~~~-----~rP~gls~~~IIaG~D~~~gp~Ly~iDpsGs~~e~~~~AiGsGs~ 236 (312)
++++++++++.+|+++++++|.+++ +++ .|||+ +++||||||+ ++|+||.+||+|++.+++++|+|+|+.
T Consensus 101 ~~~~~~~~v~~~a~~l~~~~~~y~~--~~~~~~l~~rp~~--v~~lvaG~D~-~gp~Ly~idp~G~~~~~~~~aiGsgs~ 175 (241)
T 1iru_E 101 FTYNETMTVESVTQAVSNLALQFGE--EDADPGAMSRPFG--VALLFGGVDE-KGPQLFHMDPSGTFVQCDARAIGSASE 175 (241)
T ss_dssp HHHSSCCCHHHHHHHHHTTTTCBCS--TTCCSSCBSSCCC--EEEEEEEEET-TEEEEEEECTTSCEEEBSEEEESTTHH
T ss_pred HHhCCCCCHHHHHHHHHHHHHHHhc--cccccccccccce--EEEEEEEEeC-CCCEEEEECCCCcEEecceEEECCCcH
Confidence 9999999999999999999999988 777 89988 5789999995 789999999999999999999999999
Q ss_pred HHHHHHHhhCCCCCCHHHHHHHHHHHHHHHHHhcCcCCCcEEEEEEECCC-eEEeChhHHHHHHHH
Q psy14210 237 YAQAILDTDYRPDLSEEEAYALATSAIYHACRRDIHSGGCVRLYKINGQG-WQQVLSRDVKDIYND 301 (312)
Q Consensus 237 ~a~~~Le~~y~~~ms~eEAi~la~kaL~~a~~rD~~sg~~ieI~iItk~G-~~~l~~~eI~~~l~~ 301 (312)
+++++||+.|+++||+|||++++++||..+.++ ..++++++|++|+++| +++++++|+++++.+
T Consensus 176 ~a~~~Le~~~~~~ms~eea~~la~~al~~~~~~-~~sg~~i~v~vi~~~~~~~~l~~~ei~~~~~~ 240 (241)
T 1iru_E 176 GAQSSLQELYHKSMTLKEAIKSSLIILKQVMEE-KLNATNIELATVQPGQNFHMFTKEELEEVIKD 240 (241)
T ss_dssp HHHHHHHHHCCTTCCHHHHHHHHHHHHHHHCSS-CCCTTSEEEEEECSSSCCEECCHHHHHHHHTT
T ss_pred HHHHHHHHHhccCCCHHHHHHHHHHHHHHHhhc-cCCCCCEEEEEEECCCCeEECCHHHHHHHHHh
Confidence 999999999999999999999999999999998 6789999999999997 789999999999864
No 23
>1q5r_H Proteasome beta-type subunit 1; proteasome assembly, Pro-peptide, inter-subunit contacts, hydrolase; 3.10A {Rhodococcus erythropolis} SCOP: d.153.1.4 PDB: 2h6j_H
Probab=100.00 E-value=2.7e-44 Score=336.84 Aligned_cols=211 Identities=27% Similarity=0.302 Sum_probs=197.7
Q ss_pred cccCceEEEEEcCCeEEEEEcCCccCCcccccccccccccccCCCcccccCccccCCcccCCCccccccccccccccccC
Q psy14210 2 FITGTTTLGFRYPEGIILATDSRATANDLIVSQKLNKFCQSSLGDSCELLHPVYTGGERCGQSYSQRSHCVAETQQDHFL 81 (312)
Q Consensus 2 ~~~g~t~~~~~~~~gv~~~~d~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (312)
+.+|||+|||+++||||||+|+|+++|.++.+++++|
T Consensus 62 v~~GtTiVgIk~kdGVVlAaD~r~t~G~li~~~~~~K------------------------------------------- 98 (294)
T 1q5r_H 62 APHGTTIVALTYKGGVLLAGDRRATQGNLIASRDVEA------------------------------------------- 98 (294)
T ss_dssp SCBCCCEEEEECSSCEEEEECCCEEETTEEEESCCCC-------------------------------------------
T ss_pred HhcCceEEEEEECCEEEEEEcCccccCceeecCCcce-------------------------------------------
Confidence 4689999999999999999999999999999999999
Q ss_pred CCCCCCCccccccCCccccccccccCCccccCCCCCCCCCCCCcceEEEecCeEEEEEeCChhHHHHHHHHHHHHhhhhh
Q psy14210 82 SPPLSQSSQHIISGDSCELLHPVYTGGERCGPFSQSSTVPHNTSFQVIPVSSSILCTLAGNAADCVYWLHSLAKECKGYE 161 (312)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~dgVv~~~~~~~~~~~~~~~~KI~~I~d~i~~a~sG~~aD~q~l~~~lr~~~~~~~ 161 (312)
||+|++|++|+++|+.+|++.|+++++.+++.|+
T Consensus 99 ----------------------------------------------I~~I~~~i~~~~aG~~aD~~~l~~~~r~~~~~y~ 132 (294)
T 1q5r_H 99 ----------------------------------------------VYVTDEYSAAGIAGTAGIAIELVRLFAVELEHYE 132 (294)
T ss_dssp ----------------------------------------------EEEEETTEEEEEEEBHHHHHHHHHHHHHHHHHHH
T ss_pred ----------------------------------------------EEEECCcEEEEEeecHHHHHHHHHHHHHHHHHhh
Confidence 8999999999999999999999999999999999
Q ss_pred hhcCCccCHHHHHHHHHHHHHHhccCCCCCCCCCCcccceeeeEEecCCC-----CeEEEEcCCceEEec--CeeeEccC
Q psy14210 162 CKYRTGMTIRHAANLLVNMVRKYRTGNHSSKIPNGLSFGTLMAAYDEILG-----PQLYMLDNTGLLIEG--TKFCVGSG 234 (312)
Q Consensus 162 ~~~g~~i~v~~la~~ls~~l~~~~~~~~~~~rP~gls~~~IIaG~D~~~g-----p~Ly~iDpsGs~~e~--~~~AiGsG 234 (312)
++++++++++.++++|++++|.+++ ++ +|||+ +++||||||+..+ |+||++||+|+++++ ++.++|+|
T Consensus 133 ~~~g~~isv~~la~~la~~l~~~~~--~~-~rp~~--v~lLvaG~D~~~g~~~~~p~Ly~iDp~G~~~e~~~~~~AiGsg 207 (294)
T 1q5r_H 133 KIEGVPLTFDGKANRLASMVRGNLG--AA-MQGLA--VVPLLVGYDLDADDESRAGRIVSYDVVGGRYEERAGYHAVGSG 207 (294)
T ss_dssp HHHSSCCCHHHHHHHHHHHHHHHHH--HH-TTTTC--EEEEEEEECTTCSCTTSCEEEEEECSSSCEEECCSSEEEESTT
T ss_pred HhhCCCCCHHHHHHHHHHHHHHHHh--hh-cCCcc--eEEEEEEEeCCCCcCCCCCEEEEECCCCeEEecCCCeEEEecC
Confidence 9999999999999999999999887 44 79988 5689999998546 999999999999999 89999999
Q ss_pred hHHHHHHHHhhCCCCCCHHHHHHHHHHHHHHHHHhcCcCCCc--E-----EEEEEECCCeEEeChhHHHHHHHHHhcCC
Q psy14210 235 AEYAQAILDTDYRPDLSEEEAYALATSAIYHACRRDIHSGGC--V-----RLYKINGQGWQQVLSRDVKDIYNDRKEAP 306 (312)
Q Consensus 235 s~~a~~~Le~~y~~~ms~eEAi~la~kaL~~a~~rD~~sg~~--i-----eI~iItk~G~~~l~~~eI~~~l~~~~~~~ 306 (312)
+.+++++||+.|+++||+|||++++++||..++++|..+++. + +|++|+++|+++++++|++++++.+.++.
T Consensus 208 s~~a~~~Le~~y~~~ms~eEAi~la~~aL~~a~~rD~~sG~~~~ir~i~~ev~vI~~~g~~~l~~~ei~~~l~~i~~~~ 286 (294)
T 1q5r_H 208 SLFAKSALKKIYSPDSDEETALRAAIESLYDAADDDSATGGPDLTRGIYPTAVTITQAGAVHVSEETTSELARRIVAER 286 (294)
T ss_dssp HHHHHHHHHHHCCSSCCHHHHHHHHHHHHHHHHHHCTTTCCCBTTTTBCCEEEEEETTEEEECCHHHHHHHHHHHCC--
T ss_pred cHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHhhccccCCchhhcccCCEEEEEECCCEEEcCHHHHHHHHHHHHHHh
Confidence 999999999999999999999999999999999999887654 6 99999999999999999999999986554
No 24
>3h4p_A Proteasome subunit alpha; core particle, cytoplasm, hydrolase, protease, threonine protease; 4.10A {Methanocaldococcus jannaschii}
Probab=100.00 E-value=4.6e-45 Score=337.36 Aligned_cols=208 Identities=24% Similarity=0.397 Sum_probs=195.8
Q ss_pred cccCceEEEEEcCCeEEEEEcCCccCCcccccccccccccccCCCcccccCccccCCcccCCCccccccccccccccccC
Q psy14210 2 FITGTTTLGFRYPEGIILATDSRATANDLIVSQKLNKFCQSSLGDSCELLHPVYTGGERCGQSYSQRSHCVAETQQDHFL 81 (312)
Q Consensus 2 ~~~g~t~~~~~~~~gv~~~~d~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (312)
+.+|||+|||+++||||||+|+|++++ ++.++.++|
T Consensus 35 v~~Gtt~vgi~~~dgVVlaaD~r~~~~-li~~~~~~K------------------------------------------- 70 (264)
T 3h4p_A 35 VRRGTTAIGIACKDGVVLAVDRRITSK-LVKIRSIEK------------------------------------------- 70 (264)
T ss_dssp HHHSCCEEEECCSSEEEEEEECCCCST-TBCTTTCCC-------------------------------------------
T ss_pred HhcCCcEEEEEECCEEEEEEecCccCC-ccccCcccc-------------------------------------------
Confidence 358999999999999999999999995 788888888
Q ss_pred CCCCCCCccccccCCccccccccccCCccccCCCCCCCCCCCCcceEEEecCeEEEEEeCChhHHHHHHHHHHHHhhhhh
Q psy14210 82 SPPLSQSSQHIISGDSCELLHPVYTGGERCGPFSQSSTVPHNTSFQVIPVSSSILCTLAGNAADCVYWLHSLAKECKGYE 161 (312)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~dgVv~~~~~~~~~~~~~~~~KI~~I~d~i~~a~sG~~aD~q~l~~~lr~~~~~~~ 161 (312)
||+|++|++|+++|+.+|++.|+++++.+++.|+
T Consensus 71 ----------------------------------------------I~~i~d~i~~~~aG~~aD~~~l~~~~r~~~~~y~ 104 (264)
T 3h4p_A 71 ----------------------------------------------IFQIDDHVAAATSGLVADARVLIDRARLEAQIYR 104 (264)
T ss_dssp ----------------------------------------------EEEEETTEEEEEEECSHHHHHHHTTHHHHHHHHH
T ss_pred ----------------------------------------------EEEecCcEEEEeccchHHHHHHHHHHHHHHHhhH
Confidence 9999999999999999999999999999999999
Q ss_pred hhcCCccCHHHHHHHHHHHHHHhccCCCCCCCCCCcccceeeeEEecCCCCeEEEEcCCceEEecCeeeEccChHHHHHH
Q psy14210 162 CKYRTGMTIRHAANLLVNMVRKYRTGNHSSKIPNGLSFGTLMAAYDEILGPQLYMLDNTGLLIEGTKFCVGSGAEYAQAI 241 (312)
Q Consensus 162 ~~~g~~i~v~~la~~ls~~l~~~~~~~~~~~rP~gls~~~IIaG~D~~~gp~Ly~iDpsGs~~e~~~~AiGsGs~~a~~~ 241 (312)
++++++++++.+|+++++++|.+++ ++++|||+ +++||||||+ .+|+||++||+|++.+++++|+|+|+.+++++
T Consensus 105 ~~~~~~i~v~~la~~l~~~~~~yt~--~~~~rP~~--v~~lvaG~D~-~gp~Ly~iDp~G~~~~~~~~aiGsgs~~a~~~ 179 (264)
T 3h4p_A 105 LTYGEEISIEMLAKKICDIKQAYTQ--HGGVRPFG--VSLLIAGIDK-NEARLFETDPSGALIEYKATAIGSGRPVVMEL 179 (264)
T ss_dssp HTTCSCCCHHHHHHHHHHHHHHTTS--BSSCCCCS--EEEEEEEEET-TEEEEEEECTTCCCEEESEEEESTTHHHHTTT
T ss_pred HhcCCCCCHHHHHHHHHHHHHHHhh--ccCCCCee--EEEEEEEEeC-CcCEEEEECCCceEEecCeEEECCCHHHHHHH
Confidence 9999999999999999999999998 88899998 5689999997 78999999999999999999999999999999
Q ss_pred HHhhCCCCCCHHHHHHHHHHHHHHHHHhcCcCCCcEEEEEEECC--CeEEeChhHHHHHHHHHhcCC
Q psy14210 242 LDTDYRPDLSEEEAYALATSAIYHACRRDIHSGGCVRLYKINGQ--GWQQVLSRDVKDIYNDRKEAP 306 (312)
Q Consensus 242 Le~~y~~~ms~eEAi~la~kaL~~a~~rD~~sg~~ieI~iItk~--G~~~l~~~eI~~~l~~~~~~~ 306 (312)
||+.|+++||+|||++++++||..++++ .++++++|++|+++ ++++++++||++++..++++.
T Consensus 180 Le~~~~~~ms~eea~~la~~al~~a~~~--~sg~~iev~vi~~~~~~~~~l~~~ei~~~~~~~~~~~ 244 (264)
T 3h4p_A 180 LEKEYRDDITLDEGLELAITALTKANED--IKPENVDVCIITVKDAQFKKIPVEEIKKLIEKVKKKL 244 (264)
T ss_dssp HHHHCCTTCCSHHHHHHHHHHHHHHSSS--CCTTSEEEEEEETTTTEEEECCTTTTGGGTTTTTTSS
T ss_pred HHHhccCCCCHHHHHHHHHHHHHHHHhc--cCCCeEEEEEEEeCCCcEEECCHHHHHHHHHHHHHhh
Confidence 9999999999999999999999999976 68999999999975 699999999999998876443
No 25
>1ryp_G 20S proteasome; multicatalytic proteinase, protein degradation, antigen processing, hydrolase, protease; 1.90A {Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 1jd2_F* 1g65_F 1vsy_G 2f16_F* 2fak_F* 2fny_F* 2gpl_F* 3d29_F* 3dy3_F* 3dy4_F* 3e47_F* 3gpj_F* 3gpt_F* 3gpw_F* 3hye_F* 3l5q_L 3mg0_F* 3mg4_F* 3okj_F* 3shj_F* ...
Probab=100.00 E-value=6.5e-44 Score=325.86 Aligned_cols=207 Identities=23% Similarity=0.269 Sum_probs=194.3
Q ss_pred cccCceEEEEEcCCeEEEEEcCCccCCcccccccccccccccCCCcccccCccccCCcccCCCccccccccccccccccC
Q psy14210 2 FITGTTTLGFRYPEGIILATDSRATANDLIVSQKLNKFCQSSLGDSCELLHPVYTGGERCGQSYSQRSHCVAETQQDHFL 81 (312)
Q Consensus 2 ~~~g~t~~~~~~~~gv~~~~d~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (312)
+.+|||+|||+++||||||+|+|+++|.++.++ .+|
T Consensus 27 v~~Gtt~vgi~~~dgVvlaaD~r~~~g~~~~~~-~~K------------------------------------------- 62 (244)
T 1ryp_G 27 VENGTTSIGIKCNDGVVFAVEKLITSKLLVPQK-NVK------------------------------------------- 62 (244)
T ss_dssp HHTSCCEEEEEETTEEEEEEEEECCCTTBCTTT-SCC-------------------------------------------
T ss_pred HHCCCCEEEEEECCEEEEEEecccCCCCccccc-cCc-------------------------------------------
Confidence 357999999999999999999999998777654 367
Q ss_pred CCCCCCCccccccCCccccccccccCCccccCCCCCCCCCCCCcceEEEecCeEEEEEeCChhHHHHHHHHHHHHhhhhh
Q psy14210 82 SPPLSQSSQHIISGDSCELLHPVYTGGERCGPFSQSSTVPHNTSFQVIPVSSSILCTLAGNAADCVYWLHSLAKECKGYE 161 (312)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~dgVv~~~~~~~~~~~~~~~~KI~~I~d~i~~a~sG~~aD~q~l~~~lr~~~~~~~ 161 (312)
|++|++|++|++||+.+|++.+.++++.+++.|+
T Consensus 63 ----------------------------------------------I~~i~~~i~~~~aG~~aD~~~l~~~~~~~~~~~~ 96 (244)
T 1ryp_G 63 ----------------------------------------------IQVVDRHIGCVYSGLIPDGRHLVNRGREEAASFK 96 (244)
T ss_dssp ----------------------------------------------CEEETTTEEEEEEECHHHHHHHHHHHHHHHHHHH
T ss_pred ----------------------------------------------eEEecCCEEEEEcccHHHHHHHHHHHHHHHHHHH
Confidence 8999999999999999999999999999999999
Q ss_pred hhcCCccCHHHHHHHHHHHHHHhccCCCCCCCCCCcccceeeeEEecCCCCeEEEEcCCceEEecCeeeEccChHHHHHH
Q psy14210 162 CKYRTGMTIRHAANLLVNMVRKYRTGNHSSKIPNGLSFGTLMAAYDEILGPQLYMLDNTGLLIEGTKFCVGSGAEYAQAI 241 (312)
Q Consensus 162 ~~~g~~i~v~~la~~ls~~l~~~~~~~~~~~rP~gls~~~IIaG~D~~~gp~Ly~iDpsGs~~e~~~~AiGsGs~~a~~~ 241 (312)
++++++++++.+|+++++++|.+++ +++.|||+ +++||||||+ ++|+||.+||+|+++++++.|+|+|+.+++++
T Consensus 97 ~~~~~~~~v~~la~~l~~~~~~~t~--~~~~rp~~--v~~lvaG~D~-~gp~Ly~idp~G~~~~~~~~aiG~gs~~a~~~ 171 (244)
T 1ryp_G 97 KLYKTPIPIPAFADRLGQYVQAHTL--YNSVRPFG--VSTIFGGVDK-NGAHLYMLEPSGSYWGYKGAATGKGRQSAKAE 171 (244)
T ss_dssp HHHSSCCCHHHHHHHHHHHHHHTTS--CTTBCCCC--EEEEEEEEET-TEEEEEEECTTSCEEEBSEEEESTTHHHHHHH
T ss_pred HHhCCCCCHHHHHHHHHHHHHHHhc--ccCccCce--EEEEEEEEeC-CcCEEEEECCCCCEEEeeEEEECCChHHHHHH
Confidence 9999999999999999999999999 88889988 5789999997 78999999999999999999999999999999
Q ss_pred HHhh---CCCCCCHHHHHHHHHHHHHHHHHhcCcCCCcEEEEEEEC---CCeEEeChhHHHHHHHHHh
Q psy14210 242 LDTD---YRPDLSEEEAYALATSAIYHACRRDIHSGGCVRLYKING---QGWQQVLSRDVKDIYNDRK 303 (312)
Q Consensus 242 Le~~---y~~~ms~eEAi~la~kaL~~a~~rD~~sg~~ieI~iItk---~G~~~l~~~eI~~~l~~~~ 303 (312)
||+. |+++||+|||++++++||..+.++|..++++++|++|++ +|++++.++|+.+..++.+
T Consensus 172 Le~~~~~~~~~ms~eea~~la~~al~~~~~~d~~s~~~iev~vi~~~~~~g~~~~~~~~~~~~~~~~~ 239 (244)
T 1ryp_G 172 LEKLVDHHPEGLSAREAVKQAAKIIYLAHEDNKEKDFELEISWCSLSETNGLHKFVKGDLLQEAIDFA 239 (244)
T ss_dssp HHHHHHHCTTCCCHHHHHHHHHHHHHHHGGGGTTSCEEEEEEEEETTTTTTSEEECCTHHHHHHHHHH
T ss_pred HHHhHhhcCCCCCHHHHHHHHHHHHHHHHhccCCCCCeEEEEEEEecCCCCeeeeChHHHHHHHHHHH
Confidence 9997 999999999999999999999999998999999999998 8999998888888877664
No 26
>1iru_H 20S proteasome; cell cycle, immune response, proteolysis, ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4 PDB: 3unb_N* 3une_N
Probab=100.00 E-value=1.4e-44 Score=321.38 Aligned_cols=202 Identities=27% Similarity=0.431 Sum_probs=189.6
Q ss_pred ceEEEEEcCCeEEEEEcCCccCCcccccccccccccccCCCcccccCccccCCcccCCCccccccccccccccccCCCCC
Q psy14210 6 TTTLGFRYPEGIILATDSRATANDLIVSQKLNKFCQSSLGDSCELLHPVYTGGERCGQSYSQRSHCVAETQQDHFLSPPL 85 (312)
Q Consensus 6 ~t~~~~~~~~gv~~~~d~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (312)
||+|||+++||||||+|+|+++|.++.+++.+|
T Consensus 1 tt~vgi~~~dgVvlaaD~r~~~g~~~~~~~~~K----------------------------------------------- 33 (205)
T 1iru_H 1 TTIMAVQFDGGVVLGADSRTTTGSYIANRVTDK----------------------------------------------- 33 (205)
T ss_dssp CCEEEEEETTEEEEEECCCEEETTEEEESSCCC-----------------------------------------------
T ss_pred CcEEEEEeCCEEEEEEcCCcccCcEEecCCcCc-----------------------------------------------
Confidence 799999999999999999999999999998888
Q ss_pred CCCccccccCCccccccccccCCccccCCCCCCCCCCCCcceEEEecCeEEEEEeCChhHHHHHHHHHHHHhhhhhhhcC
Q psy14210 86 SQSSQHIISGDSCELLHPVYTGGERCGPFSQSSTVPHNTSFQVIPVSSSILCTLAGNAADCVYWLHSLAKECKGYECKYR 165 (312)
Q Consensus 86 ~~~~~~~~~~~~~~~~~~~~~dgVv~~~~~~~~~~~~~~~~KI~~I~d~i~~a~sG~~aD~q~l~~~lr~~~~~~~~~~g 165 (312)
||+|++|++|++||+.+|++.+.++++.+++.|+++++
T Consensus 34 ------------------------------------------i~~i~~~i~~~~aG~~aD~~~l~~~~~~~~~~~~~~~~ 71 (205)
T 1iru_H 34 ------------------------------------------LTPIHDRIFCCRSGSAADTQAVADAVTYQLGFHSIELN 71 (205)
T ss_dssp ------------------------------------------EEEEETTEEEEEEECHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred ------------------------------------------eEEcCCCEEEEcCccHHHHHHHHHHHHHHHHHHHHHhC
Confidence 89999999999999999999999999999999999999
Q ss_pred CccCHHHHHHHHHHHHHHhccCCCCCCCCCCcccceeeeEEecCCCCeEEEEcCCceEEecCeeeEccChHHHHHHHHhh
Q psy14210 166 TGMTIRHAANLLVNMVRKYRTGNHSSKIPNGLSFGTLMAAYDEILGPQLYMLDNTGLLIEGTKFCVGSGAEYAQAILDTD 245 (312)
Q Consensus 166 ~~i~v~~la~~ls~~l~~~~~~~~~~~rP~gls~~~IIaG~D~~~gp~Ly~iDpsGs~~e~~~~AiGsGs~~a~~~Le~~ 245 (312)
++++++.+++++++++|.+|+ ||+ +++|+||||+.++|+||.+||+|++.++++.++|+|+.+++++||+.
T Consensus 72 ~~~~v~~la~~l~~~~~~~~~-------p~~--~~~lvaG~D~~~gp~ly~~d~~G~~~~~~~~a~Gsgs~~a~~~Le~~ 142 (205)
T 1iru_H 72 EPPLVHTAASLFKEMCYRYRE-------DLM--AGIIIAGWDPQEGGQVYSVPMGGMMVRQSFAIGGSGSSYIYGYVDAT 142 (205)
T ss_dssp SCCCHHHHHHHHHHHHHHTTT-------TCC--EEEEEEEEETTTEEEEEEECTTSCCEECSEEEESGGGGGGHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHhcCc-------Ccc--EEEEEEEEeCCCCCEEEEECCCCcEEecCEEEECCCHHHHHHHHHHh
Confidence 999999999999999998875 777 57899999976789999999999999999999999999999999999
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHHhcCcCCCcEEEEEEECCCe--EEeChhHHHHHHHHHhcCCC
Q psy14210 246 YRPDLSEEEAYALATSAIYHACRRDIHSGGCVRLYKINGQGW--QQVLSRDVKDIYNDRKEAPP 307 (312)
Q Consensus 246 y~~~ms~eEAi~la~kaL~~a~~rD~~sg~~ieI~iItk~G~--~~l~~~eI~~~l~~~~~~~~ 307 (312)
|+++||+|||++++++||..+.+||..++++++|++|+++|+ +.++++||++++.+ .-||
T Consensus 143 ~~~~~s~eea~~l~~~al~~~~~~d~~s~~~i~v~vi~~~g~~~~~l~~~ei~~~~~~--~~~~ 204 (205)
T 1iru_H 143 YREGMTKEECLQFTANALALAMERDGSSGGVIRLAAIAESGVERQVLLGDQIPKFAVA--TLPP 204 (205)
T ss_dssp CCTTCCHHHHHHHHHHHHHHHHHHBTTCCSCEEEEEEETTEEEEEEECGGGSCCCCCC--CC--
T ss_pred cCCCCCHHHHHHHHHHHHHHHHHhccccCCcEEEEEEeCCCeEEEEeChHHhhHHHhh--cCCC
Confidence 999999999999999999999999999999999999999985 57899999888764 4444
No 27
>1ryp_K 20S proteasome; multicatalytic proteinase, protein degradation, antigen processing, hydrolase, protease; 1.90A {Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 1fnt_K 1g0u_J* 1jd2_J* 1g65_J 1vsy_K 1z7q_K 2f16_J* 2fak_J* 2fny_J* 2gpl_J* 2zcy_J* 3bdm_J* 3d29_J* 3dy3_J* 3dy4_J* 3e47_J* 3gpj_J* 3gpt_J* 3gpw_J* 3hye_J* ...
Probab=100.00 E-value=8.7e-44 Score=314.44 Aligned_cols=192 Identities=23% Similarity=0.308 Sum_probs=183.0
Q ss_pred ceEEEEEcCCeEEEEEcCCccCCcccccccccccccccCCCcccccCccccCCcccCCCccccccccccccccccCCCCC
Q psy14210 6 TTTLGFRYPEGIILATDSRATANDLIVSQKLNKFCQSSLGDSCELLHPVYTGGERCGQSYSQRSHCVAETQQDHFLSPPL 85 (312)
Q Consensus 6 ~t~~~~~~~~gv~~~~d~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (312)
||+|||+++||||||+|+|+++|.++.+++.+|
T Consensus 2 tt~vgi~~~dgVvlaaD~r~~~g~~~~~~~~~K----------------------------------------------- 34 (198)
T 1ryp_K 2 DIILGIRVQDSVILASSKAVTRGISVLKDSDDK----------------------------------------------- 34 (198)
T ss_dssp CCEEEEECSSCEEEEEECCEEETTEEEESCCCC-----------------------------------------------
T ss_pred ceEEEEEECCEEEEEECCCcccCCEEEecCCCc-----------------------------------------------
Confidence 899999999999999999999999988888888
Q ss_pred CCCccccccCCccccccccccCCccccCCCCCCCCCCCCcceEEEecCeEEEEEeCChhHHHHHHHHHHHHhhhhhhhcC
Q psy14210 86 SQSSQHIISGDSCELLHPVYTGGERCGPFSQSSTVPHNTSFQVIPVSSSILCTLAGNAADCVYWLHSLAKECKGYECKYR 165 (312)
Q Consensus 86 ~~~~~~~~~~~~~~~~~~~~~dgVv~~~~~~~~~~~~~~~~KI~~I~d~i~~a~sG~~aD~q~l~~~lr~~~~~~~~~~g 165 (312)
|++|++|+++++||+.+|++.+.++++.+++.|+++++
T Consensus 35 ------------------------------------------i~~i~~~i~~~~aG~~aD~~~l~~~~~~~~~~~~~~~~ 72 (198)
T 1ryp_K 35 ------------------------------------------TRQLSPHTLMSFAGEAGDTVQFAEYIQANIQLYSIRED 72 (198)
T ss_dssp ------------------------------------------EEEEETTEEEEEEESHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred ------------------------------------------eEEeCCCEEEEeccCHHHHHHHHHHHHHHHHHHHHhcC
Confidence 99999999999999999999999999999999999999
Q ss_pred CccCHHHHHHHHHHHHHHhccCCCCCCCCCCcccceeeeEEec-CCCCeEEEEcCCceEEecCeeeEccChHHHHHHHHh
Q psy14210 166 TGMTIRHAANLLVNMVRKYRTGNHSSKIPNGLSFGTLMAAYDE-ILGPQLYMLDNTGLLIEGTKFCVGSGAEYAQAILDT 244 (312)
Q Consensus 166 ~~i~v~~la~~ls~~l~~~~~~~~~~~rP~gls~~~IIaG~D~-~~gp~Ly~iDpsGs~~e~~~~AiGsGs~~a~~~Le~ 244 (312)
++++++.+++++++++|.+++ .++||+ +++|+||||+ +++|+||.+||+|++.++++.|+|+|+.+++++||+
T Consensus 73 ~~~~v~~la~~l~~~l~~~~~----~r~p~~--v~~lvaG~D~~~~~p~Ly~idp~G~~~~~~~~aiG~g~~~a~~~Le~ 146 (198)
T 1ryp_K 73 YELSPQAVSSFVRQELAKSIR----SRRPYQ--VNVLIGGYDKKKNKPELYQIDYLGTKVELPYGAHGYSGFYTFSLLDH 146 (198)
T ss_dssp SCCCHHHHHHHHHHHHHHHTT----SSSCCC--EEEEEEEEETTTTEEEEEEECTTCCEEECSEEECTTHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHhcc----cCCCce--EEEEEEEEeCCCCCcEEEEECCCCCEEECCEEEEcccHHHHHHHHHh
Confidence 999999999999999999886 235988 5789999996 478999999999999999999999999999999999
Q ss_pred hCCCCCCHHHHHHHHHHHHHHHHHhcCcCCCcEEEEEEECCCeEEeCh
Q psy14210 245 DYRPDLSEEEAYALATSAIYHACRRDIHSGGCVRLYKINGQGWQQVLS 292 (312)
Q Consensus 245 ~y~~~ms~eEAi~la~kaL~~a~~rD~~sg~~ieI~iItk~G~~~l~~ 292 (312)
.|+++||+|||++++++||..+.+||..++++++|++|+++|++++++
T Consensus 147 ~~~~~~s~eea~~l~~~al~~~~~~d~~s~~~i~v~vi~~~g~~~~~~ 194 (198)
T 1ryp_K 147 HYRPDMTTEEGLDLLKLCVQELEKRMPMDFKGVIVKIVDKDGIRQVDD 194 (198)
T ss_dssp HCCTTCCHHHHHHHHHHHHHHHHHHCSBCCCCEEEEEEETTEEEEECC
T ss_pred hcCCCCCHHHHHHHHHHHHHHHHHhCccCCCceEEEEEcCCCEEEecc
Confidence 999999999999999999999999999999999999999999998876
No 28
>1ryp_B 20S proteasome; multicatalytic proteinase, protein degradation, antigen processing, hydrolase, protease; 1.90A {Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 1fnt_B 1g0u_A* 1jd2_A* 1g65_A 1z7q_B 2f16_A* 2fak_A* 2fny_A* 2gpl_A* 2zcy_A* 3bdm_A* 3d29_A* 3dy3_A* 3dy4_A* 3e47_A* 3gpj_A* 3gpt_A* 3gpw_A* 3hye_A* 3mg0_A* ...
Probab=100.00 E-value=1.1e-43 Score=325.18 Aligned_cols=205 Identities=20% Similarity=0.344 Sum_probs=192.9
Q ss_pred cccCceEEEEEcCCeEEEEEcCCccCCcccccccccccccccCCCcccccCccccCCcccCCCccccccccccccccccC
Q psy14210 2 FITGTTTLGFRYPEGIILATDSRATANDLIVSQKLNKFCQSSLGDSCELLHPVYTGGERCGQSYSQRSHCVAETQQDHFL 81 (312)
Q Consensus 2 ~~~g~t~~~~~~~~gv~~~~d~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (312)
+.+|||+|||+++||||||+|+|++ +.++.+++++|
T Consensus 28 v~~Gtt~vgi~~~dgVvlaaD~r~~-~~l~~~~~~~K------------------------------------------- 63 (250)
T 1ryp_B 28 VKQGVTSLGIKATNGVVIATEKKSS-SPLAMSETLSK------------------------------------------- 63 (250)
T ss_dssp HHTSCCEEEEEETTEEEEEEECCCS-CSSBCGGGCCS-------------------------------------------
T ss_pred HHcCCcEEEEEECCEEEEEEeccCC-CccccCcccCc-------------------------------------------
Confidence 3589999999999999999999998 78999998888
Q ss_pred CCCCCCCccccccCCccccccccccCCccccCCCCCCCCCCCCcceEEEecCeEEEEEeCChhHHHHHHHHHHHHhhh-h
Q psy14210 82 SPPLSQSSQHIISGDSCELLHPVYTGGERCGPFSQSSTVPHNTSFQVIPVSSSILCTLAGNAADCVYWLHSLAKECKG-Y 160 (312)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~dgVv~~~~~~~~~~~~~~~~KI~~I~d~i~~a~sG~~aD~q~l~~~lr~~~~~-~ 160 (312)
|++|++|++|++||..+|++.+.++++.+++. |
T Consensus 64 ----------------------------------------------i~~i~~~i~~~~aG~~aD~~~l~~~~~~~~~~~~ 97 (250)
T 1ryp_B 64 ----------------------------------------------VSLLTPDIGAVYSGMGPDYRVLVDKSRKVAHTSY 97 (250)
T ss_dssp ----------------------------------------------SEEEETTEEEEEEECHHHHHHHHHHHHHHHHHTT
T ss_pred ----------------------------------------------eEEECCCEEEEeeeCHHHHHHHHHHHHHHHHHHH
Confidence 89999999999999999999999999999999 9
Q ss_pred hhhcCCccCHHHHHHHHHHHHHHhccCCCCCCCCCCcccceeeeEEecCCCCeEEEEcCCceEEecCeeeEccChHHHHH
Q psy14210 161 ECKYRTGMTIRHAANLLVNMVRKYRTGNHSSKIPNGLSFGTLMAAYDEILGPQLYMLDNTGLLIEGTKFCVGSGAEYAQA 240 (312)
Q Consensus 161 ~~~~g~~i~v~~la~~ls~~l~~~~~~~~~~~rP~gls~~~IIaG~D~~~gp~Ly~iDpsGs~~e~~~~AiGsGs~~a~~ 240 (312)
++.++.+++++.+++.++++++.+++ +.+.|||+ +++||||||+.++|+||.+||+|++.++++.|+|+|+.++++
T Consensus 98 ~~~~~~~~~~~~l~~~~a~~~~~~~~--~~~~rp~~--v~~lvaG~D~~~gp~Ly~idp~G~~~~~~~~aiGsgs~~a~~ 173 (250)
T 1ryp_B 98 KRIYGEYPPTKLLVSEVAKIMQEATQ--SGGVRPFG--VSLLIAGHDEFNGFSLYQVDPSGSYFPWKATAIGKGSVAAKT 173 (250)
T ss_dssp HHHHSSCCCHHHHHHHHHHHHHHTTT--SBTBCCCC--EEEEEEEEETTTEEEEEEECTTSCEEEBSEEEESTTHHHHHH
T ss_pred HHHhCCCCCHHHHHHHHHHHHHHHHh--cCCcccce--EEEEEEEEcCCCCcEEEEECCCCCEEeeceeEecCccHHHHH
Confidence 99999999999999999999999998 77889988 578999999756899999999999999999999999999999
Q ss_pred HHHhhCCCCCCHHHHHHHHHHHHHHHHHhcCcCCCcEEEEEEECC----------------CeEEeChhHHHHHHHH
Q psy14210 241 ILDTDYRPDLSEEEAYALATSAIYHACRRDIHSGGCVRLYKINGQ----------------GWQQVLSRDVKDIYND 301 (312)
Q Consensus 241 ~Le~~y~~~ms~eEAi~la~kaL~~a~~rD~~sg~~ieI~iItk~----------------G~~~l~~~eI~~~l~~ 301 (312)
+||+.|+++||+|||++++++||..+++++ .++++++|++|+++ ++++++++||++++..
T Consensus 174 ~Le~~~~~~ms~eea~~la~~al~~~~~~~-~sg~~i~v~vi~~~~~~~~~~~~~~~~~~~~~~~l~~~ei~~~l~~ 249 (250)
T 1ryp_B 174 FLEKRWNDELELEDAIHIALLTLKESVEGE-FNGDTIELAIIGDENPDLLGYTGIPTDKGPRFRKLTSQEINDRLEA 249 (250)
T ss_dssp HHHHHCCTTCCHHHHHHHHHHHHHHHCCSC-CSTTTEEEEEECSCCGGGTSEESCSSCCCCSEEECCHHHHHHHHTT
T ss_pred HHHHHhccCCCHHHHHHHHHHHHHHHhccc-cCCCCEEEEEEEccccccccccccccCCCCCeEECCHHHHHHHHHh
Confidence 999999999999999999999999999886 47999999999986 3899999999999864
No 29
>1g0u_M Proteasome component PRE4; ubiquitin, degradation, protease, NTN-hydrolase; 2.40A {Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 2zcy_M* 3bdm_M* 3mg6_M* 3mg7_M* 3mg8_M* 3nzj_M* 3nzw_M* 3nzx_M*
Probab=100.00 E-value=1.1e-44 Score=334.97 Aligned_cols=213 Identities=17% Similarity=0.201 Sum_probs=200.0
Q ss_pred cccCceEEEEEcCCeEEEEEcCCccCCcccccccccccccccCCCcccccCccccCCcccCCCccccccccccccccccC
Q psy14210 2 FITGTTTLGFRYPEGIILATDSRATANDLIVSQKLNKFCQSSLGDSCELLHPVYTGGERCGQSYSQRSHCVAETQQDHFL 81 (312)
Q Consensus 2 ~~~g~t~~~~~~~~gv~~~~d~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (312)
+.+|||+|||+++||||||+|+|+++|.++.++.++|
T Consensus 38 v~~GtT~vgi~~~dgVVlAaD~r~t~g~~i~~~~~~K------------------------------------------- 74 (266)
T 1g0u_M 38 IVTGTSVISMKYDNGVIIAADNLGSYGSLLRFNGVER------------------------------------------- 74 (266)
T ss_dssp CEEECCEEEEEETTEEEEEEECCEEETTEEEECCCCC-------------------------------------------
T ss_pred cccCceEEEEEECCEEEEEEcCCcccCceeecCCcCc-------------------------------------------
Confidence 4689999999999999999999999999999999888
Q ss_pred CCCCCCCccccccCCccccccccccCCccccCCCCCCCCCCCCcceEEEecCeEEEEEeCChhHHHHHHHHHHHHhhhhh
Q psy14210 82 SPPLSQSSQHIISGDSCELLHPVYTGGERCGPFSQSSTVPHNTSFQVIPVSSSILCTLAGNAADCVYWLHSLAKECKGYE 161 (312)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~dgVv~~~~~~~~~~~~~~~~KI~~I~d~i~~a~sG~~aD~q~l~~~lr~~~~~~~ 161 (312)
|++|++|++|+++|..+|++.|+++++.+++.|+
T Consensus 75 ----------------------------------------------I~~i~d~i~~~~aG~~aD~~~l~~~lr~~~~~~~ 108 (266)
T 1g0u_M 75 ----------------------------------------------LIPVGDNTVVGISGDISDMQHIERLLKDLVTENA 108 (266)
T ss_dssp ----------------------------------------------EEECTTSEEEEEEEEHHHHHHHHHHHHHHHHHHH
T ss_pred ----------------------------------------------EEEcCCCEEEEeccCHHHHHHHHHHHHHHHHHhh
Confidence 8999999999999999999999999999999999
Q ss_pred h-----hcCCccCHHHHHHHHHHHHHHhccCCCCCCCCCCcccceeeeEEecCCCCeEEEEcCCceEEecCeeeEccChH
Q psy14210 162 C-----KYRTGMTIRHAANLLVNMVRKYRTGNHSSKIPNGLSFGTLMAAYDEILGPQLYMLDNTGLLIEGTKFCVGSGAE 236 (312)
Q Consensus 162 ~-----~~g~~i~v~~la~~ls~~l~~~~~~~~~~~rP~gls~~~IIaG~D~~~gp~Ly~iDpsGs~~e~~~~AiGsGs~ 236 (312)
+ +++++++++.+|+++++++|.++. +.|||+ +++||||||+.++|+||.+||+|++.++++.++|+|+.
T Consensus 109 ~~~~~~~~~~~~~v~~la~~l~~~ly~~r~----~~~P~~--v~~lvaG~D~~~gp~Ly~idp~G~~~~~~~~aiGsgs~ 182 (266)
T 1g0u_M 109 YDNPLADAEEALEPSYIFEYLATVMYQRRS----KMNPLW--NAIIVAGVQSNGDQFLRYVNLLGVTYSSPTLATGFGAH 182 (266)
T ss_dssp TTCTTTTTTTSCCHHHHHHHHHHHHHHHHH----TTCCCC--EEEEEEEECTTSCEEEEEEETTCCEECCSEEECTHHHH
T ss_pred hccchhhcCCCCCHHHHHHHHHHHHHHhcc----CCCCce--EEEEEEEEcCCCCEEEEEECCCCCEEeCCEEEEccCHH
Confidence 8 899999999999999999998765 579988 57899999985589999999999999999999999999
Q ss_pred HHHHHHHhhCCC-----CCCHHHHHHHHHHHHHHHHHhcCcCCCcEEEEEEECC-CeEEeChhHHHHHHHHHhcCCCCC
Q psy14210 237 YAQAILDTDYRP-----DLSEEEAYALATSAIYHACRRDIHSGGCVRLYKINGQ-GWQQVLSRDVKDIYNDRKEAPPGG 309 (312)
Q Consensus 237 ~a~~~Le~~y~~-----~ms~eEAi~la~kaL~~a~~rD~~sg~~ieI~iItk~-G~~~l~~~eI~~~l~~~~~~~~~~ 309 (312)
+++++||+.|++ +||+|||++++++||..+.+||..++++++|++|+++ |+++++++||+++-|++++-..|-
T Consensus 183 ~a~~~Le~~~~~~~~~~~ms~eeA~~la~~al~~a~~rd~~sg~~i~v~vI~k~~g~~~~~~~ei~~~~w~~~~~~~~~ 261 (266)
T 1g0u_M 183 MANPLLRKVVDRESDIPKTTVQVAEEAIVNAMRVLYYRDARSSRNFSLAIIDKNTGLTFKKNLQVENMKWDFAKDIKGY 261 (266)
T ss_dssp THHHHHTTTCSSGGGGGGCCHHHHHHHHHHHHHHHHHHBTTCCSEEEEEEEETTTEEEEEEEEECCCCCCGGGGGCCSS
T ss_pred HHHHHHHHhhcccccCCCCCHHHHHHHHHHHHHHHHHhcCCCCCcEEEEEEECCCCeEEcCHHHhhhhhhhHHhhhcCc
Confidence 999999999999 9999999999999999999999999999999999999 999999999999966777655543
No 30
>1iru_M 20S proteasome; cell cycle, immune response, proteolysis, ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4 PDB: 3unb_L* 3une_L 3unf_L* 3unh_L
Probab=100.00 E-value=2.6e-43 Score=314.90 Aligned_cols=192 Identities=21% Similarity=0.266 Sum_probs=181.4
Q ss_pred cccCceEEEEEcCCeEEEEEcCCccCCcccccccccccccccCCCcccccCccccCCcccCCCccccccccccccccccC
Q psy14210 2 FITGTTTLGFRYPEGIILATDSRATANDLIVSQKLNKFCQSSLGDSCELLHPVYTGGERCGQSYSQRSHCVAETQQDHFL 81 (312)
Q Consensus 2 ~~~g~t~~~~~~~~gv~~~~d~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (312)
+.+|||+|||+++||||||+|+|+++|.++.++..+|
T Consensus 6 v~~Gtt~vgi~~~dgVvlaaD~r~~~g~~~~~~~~~K------------------------------------------- 42 (213)
T 1iru_M 6 VFNGGTILAIAGEDFAIVASDTRLSEGFSIHTRDSPK------------------------------------------- 42 (213)
T ss_dssp CCCCCEEEEEEETTEEEEEEECCEEETTEEEESCCCC-------------------------------------------
T ss_pred cCCCCcEEEEEeCCEEEEEECCCcccCCEEecCCCCc-------------------------------------------
Confidence 5689999999999999999999999999998888888
Q ss_pred CCCCCCCccccccCCccccccccccCCccccCCCCCCCCCCCCcceEEEecCeEEEEEeCChhHHHHHHHHHHHHhhhhh
Q psy14210 82 SPPLSQSSQHIISGDSCELLHPVYTGGERCGPFSQSSTVPHNTSFQVIPVSSSILCTLAGNAADCVYWLHSLAKECKGYE 161 (312)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~dgVv~~~~~~~~~~~~~~~~KI~~I~d~i~~a~sG~~aD~q~l~~~lr~~~~~~~ 161 (312)
|++|++|++|++||+.+|++.+.++++.+++.|+
T Consensus 43 ----------------------------------------------i~~i~~~i~~~~aG~~aD~~~l~~~~~~~~~~~~ 76 (213)
T 1iru_M 43 ----------------------------------------------CYKLTDKTVIGCSGFHGDCLTLTKIIEARLKMYK 76 (213)
T ss_dssp ----------------------------------------------EEEEETTEEEEEEECHHHHHHHHHHHHHHHHHHH
T ss_pred ----------------------------------------------EEEcCCCEEEEccccHHHHHHHHHHHHHHHHHHH
Confidence 8999999999999999999999999999999999
Q ss_pred hhcCCccCHHHHHHHHHHHHHHhccCCCCCCCCCCcccceeeeEEecCCCCeEEEEcCCceEEecCeeeEccChHHHHHH
Q psy14210 162 CKYRTGMTIRHAANLLVNMVRKYRTGNHSSKIPNGLSFGTLMAAYDEILGPQLYMLDNTGLLIEGTKFCVGSGAEYAQAI 241 (312)
Q Consensus 162 ~~~g~~i~v~~la~~ls~~l~~~~~~~~~~~rP~gls~~~IIaG~D~~~gp~Ly~iDpsGs~~e~~~~AiGsGs~~a~~~ 241 (312)
++++++++++.+|+++++++|.++ .|||+ +++||||||++++|+||.+||+|++.++++.|+|+|+.+++++
T Consensus 77 ~~~~~~~~v~~la~~l~~~~y~~r------~~P~~--v~~lvaG~D~~g~p~Ly~id~~G~~~~~~~~aiGsg~~~a~~~ 148 (213)
T 1iru_M 77 HSNNKAMTTGAIAAMLSTILYSRR------FFPYY--VYNIIGGLDEEGKGAVYSFDPVGSYQRDSFKAGGSASAMLQPL 148 (213)
T ss_dssp HHHSSCCCHHHHHHHHHHHHHHTT------TSCCC--EEEEEEEECTTSCEEEEEECTTSCEEEESEEEEETTHHHHHHH
T ss_pred HhcCCCCCHHHHHHHHHHHHHhhC------CCCce--EEEEEEEEcCCCCEEEEEECCCCCEEECCEEEEeeCHHHHHHH
Confidence 999999999999999999997654 38988 5789999997556999999999999999999999999999999
Q ss_pred HHhh---------CCCCCCHHHHHHHHHHHHHHHHHhcCcCCCcEEEEEEECCCeEEe
Q psy14210 242 LDTD---------YRPDLSEEEAYALATSAIYHACRRDIHSGGCVRLYKINGQGWQQV 290 (312)
Q Consensus 242 Le~~---------y~~~ms~eEAi~la~kaL~~a~~rD~~sg~~ieI~iItk~G~~~l 290 (312)
||+. |+++||+|||++++++||..+.++|..++++++|++|+++|++..
T Consensus 149 Le~~~~~~~~~~~~~~~~s~eea~~l~~~al~~~~~~d~~s~~~i~v~vi~~~g~~~~ 206 (213)
T 1iru_M 149 LDNQVGFKNMQNVEHVPLSLDRAMRLVKDVFISAAERDVYTGDALRICIVTKEGIREE 206 (213)
T ss_dssp HHHHTTCCSCSSCCCCCCCHHHHHHHHHHHHHHHHHHBTTSCSEEEEEEEETTEEEEE
T ss_pred HhhccccccccccCCCCCCHHHHHHHHHHHHHHHHHhCCccCCcEEEEEEcCCCeEEE
Confidence 9999 889999999999999999999999999999999999999998653
No 31
>1ryp_F 20S proteasome; multicatalytic proteinase, protein degradation, antigen processing, hydrolase, protease; 1.90A {Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 1jd2_E* 1g65_E 2f16_E* 2fak_E* 2fny_E* 2gpl_E* 3d29_E* 3dy3_E* 3dy4_E* 3e47_E* 3gpj_E* 3gpt_E* 3gpw_E* 3hye_E* 3mg0_E* 3mg4_E* 3oeu_E* 3oev_E* 3okj_E* 3shj_E* ...
Probab=100.00 E-value=4.3e-44 Score=324.60 Aligned_cols=200 Identities=20% Similarity=0.275 Sum_probs=186.7
Q ss_pred cccCceEEEEEcCCeEEEEEcCCccCCcccccccccccccccCCCcccccCccccCCcccCCCccccccccccccccccC
Q psy14210 2 FITGTTTLGFRYPEGIILATDSRATANDLIVSQKLNKFCQSSLGDSCELLHPVYTGGERCGQSYSQRSHCVAETQQDHFL 81 (312)
Q Consensus 2 ~~~g~t~~~~~~~~gv~~~~d~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (312)
+.+|||+|||+++||||||+|+|+++| +. +..+|
T Consensus 28 v~~Gtt~vgi~~~dgVvlaaD~r~~~~-l~--~~~~K------------------------------------------- 61 (233)
T 1ryp_F 28 IKQGSVTVGLRSNTHAVLVALKRNADE-LS--SYQKK------------------------------------------- 61 (233)
T ss_dssp HHTSCCEEEEECSSEEEEEEECCCSST-TB--CCCCC-------------------------------------------
T ss_pred HHcCCCEEEEEcCCEEEEEEEeccccc-cc--cccCc-------------------------------------------
Confidence 357999999999999999999999997 22 34455
Q ss_pred CCCCCCCccccccCCccccccccccCCccccCCCCCCCCCCCCcceEEEecCeEEEEEeCChhHHHHHHHHHHHHhhhhh
Q psy14210 82 SPPLSQSSQHIISGDSCELLHPVYTGGERCGPFSQSSTVPHNTSFQVIPVSSSILCTLAGNAADCVYWLHSLAKECKGYE 161 (312)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~dgVv~~~~~~~~~~~~~~~~KI~~I~d~i~~a~sG~~aD~q~l~~~lr~~~~~~~ 161 (312)
|++|++|++|++||..+|++.+.++++.+++.|+
T Consensus 62 ----------------------------------------------i~~i~~~i~~~~aG~~aD~~~l~~~~~~~~~~~~ 95 (233)
T 1ryp_F 62 ----------------------------------------------IIKCDEHMGLSLAGLAPDARVLSNYLRQQCNYSS 95 (233)
T ss_dssp ----------------------------------------------EEEEETTEEEEEEECHHHHHHHHHHHHHHHHHHH
T ss_pred ----------------------------------------------EEEEcCCEEEEEEechHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999
Q ss_pred hhcCCccCHHHHHHHHHHHHHHhccCCCCCCCCCCcccceeeeEEecCCCCeEEEEcCCceEEecCeeeEccChHHHHHH
Q psy14210 162 CKYRTGMTIRHAANLLVNMVRKYRTGNHSSKIPNGLSFGTLMAAYDEILGPQLYMLDNTGLLIEGTKFCVGSGAEYAQAI 241 (312)
Q Consensus 162 ~~~g~~i~v~~la~~ls~~l~~~~~~~~~~~rP~gls~~~IIaG~D~~~gp~Ly~iDpsGs~~e~~~~AiGsGs~~a~~~ 241 (312)
++++++++++.+++++++++|.+++ +++.|||+ +++||||||+ .+|+||++||+|++.++++.|+|+|+.+++++
T Consensus 96 ~~~~~~~~v~~la~~l~~~~~~~t~--~~~~rp~~--v~~lvaG~D~-~gp~Ly~idp~G~~~~~~~~aiG~gs~~a~~~ 170 (233)
T 1ryp_F 96 LVFNRKLAVERAGHLLCDKAQKNTQ--SYGGRPYG--VGLLIIGYDK-SGAHLLEFQPSGNVTELYGTAIGARSQGAKTY 170 (233)
T ss_dssp HHHSCCCCHHHHHHHHHHHHHHHHH--BTTCCCCC--EEEEEEEEET-TEEEEEEECTTSCEEEESEEEESTTHHHHHHH
T ss_pred HHHCCCCCHHHHHHHHHHHHHHHhc--ccCCcCcc--eEEEEEEEeC-CcCEEEEECCCCCeeeeeEEEECCCcHHHHHH
Confidence 9999999999999999999999998 77889988 5789999998 78999999999999999999999999999999
Q ss_pred HHhhCCC--CC--CHHHHHHHHHHHHHHHHHhc-CcCCCcEEEEEEECC-CeEEeChhHHHHHH
Q psy14210 242 LDTDYRP--DL--SEEEAYALATSAIYHACRRD-IHSGGCVRLYKINGQ-GWQQVLSRDVKDIY 299 (312)
Q Consensus 242 Le~~y~~--~m--s~eEAi~la~kaL~~a~~rD-~~sg~~ieI~iItk~-G~~~l~~~eI~~~l 299 (312)
||+.|++ +| |+|||++++++||..++ +| ..++++++|++|+++ |+++++++||++++
T Consensus 171 Le~~~~~~~~m~~s~eea~~~a~~al~~~~-~d~~~s~~~i~v~vi~~~~~~~~l~~~ei~~~l 233 (233)
T 1ryp_F 171 LERTLDTFIKIDGNPDELIKAGVEAISQSL-RDESLTVDNLSIAIVGKDTPFTIYDGEAVAKYI 233 (233)
T ss_dssp HHHHHHHHTTCCSCHHHHHHHHHHHHTTSC-CSSCCCTTTEEEEEEETTEEEEEEEGGGGGGGC
T ss_pred HHHHhccccccCCCHHHHHHHHHHHHHHHh-hcccCCCCcEEEEEEECCCCEEECCHHHHHhhC
Confidence 9999998 99 99999999999999999 77 578999999999998 79999999998763
No 32
>3unf_H Proteasome subunit beta type-10; antigen presentation, drug development, protein degradation, hydrolase-hydrolase inhibitor complex; HET: 04C; 2.90A {Mus musculus} PDB: 3unh_H
Probab=100.00 E-value=2e-43 Score=321.01 Aligned_cols=194 Identities=25% Similarity=0.313 Sum_probs=185.2
Q ss_pred ceEEEEEcCCeEEEEEcCCccCCcccccccccccccccCCCcccccCccccCCcccCCCccccccccccccccccCCCCC
Q psy14210 6 TTTLGFRYPEGIILATDSRATANDLIVSQKLNKFCQSSLGDSCELLHPVYTGGERCGQSYSQRSHCVAETQQDHFLSPPL 85 (312)
Q Consensus 6 ~t~~~~~~~~gv~~~~d~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (312)
||+|||+++||||||+|+|+++|.++.+++++|
T Consensus 1 TT~vgi~~kdgVVlaaD~r~t~g~~v~~~~~~K----------------------------------------------- 33 (234)
T 3unf_H 1 TTIAGLVFRDGVILGADTRATNDSVVADKSCEK----------------------------------------------- 33 (234)
T ss_dssp CEEEEEECSSEEEEEECCCEEETTEEEESSCCC-----------------------------------------------
T ss_pred CeEEEEEeCCEEEEEECCCcccCCEeccCcccc-----------------------------------------------
Confidence 899999999999999999999999999998888
Q ss_pred CCCccccccCCccccccccccCCccccCCCCCCCCCCCCcceEEEecCeEEEEEeCChhHHHHHHHHHHHHhhhhhhhcC
Q psy14210 86 SQSSQHIISGDSCELLHPVYTGGERCGPFSQSSTVPHNTSFQVIPVSSSILCTLAGNAADCVYWLHSLAKECKGYECKYR 165 (312)
Q Consensus 86 ~~~~~~~~~~~~~~~~~~~~~dgVv~~~~~~~~~~~~~~~~KI~~I~d~i~~a~sG~~aD~q~l~~~lr~~~~~~~~~~g 165 (312)
||+|++|++|++||..+|++.+.++++.+++.|+++++
T Consensus 34 ------------------------------------------I~~i~~~i~~~~aG~~aD~~~l~~~~~~~~~~~~~~~~ 71 (234)
T 3unf_H 34 ------------------------------------------IHFIAPKIYCCGAGVAADTEMTTRMAASKMELHALSTG 71 (234)
T ss_dssp ------------------------------------------EEEEETTEEEEEEESHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred ------------------------------------------EEEecCCEEEEecccHHHHHHHHHHHHHHHHhhHHhcC
Confidence 89999999999999999999999999999999999999
Q ss_pred CccCHHHHHHHHHHHHHHhccCCCCCCCCCCcccceeeeEEecCCCCeEEEEcCCceEEecCeeeEccChHHHHHHHHhh
Q psy14210 166 TGMTIRHAANLLVNMVRKYRTGNHSSKIPNGLSFGTLMAAYDEILGPQLYMLDNTGLLIEGTKFCVGSGAEYAQAILDTD 245 (312)
Q Consensus 166 ~~i~v~~la~~ls~~l~~~~~~~~~~~rP~gls~~~IIaG~D~~~gp~Ly~iDpsGs~~e~~~~AiGsGs~~a~~~Le~~ 245 (312)
++++++.+++++++++|.++ +||+ +++||||||+ +||+||++||+|++.++++.|+|+|+.+++++||+.
T Consensus 72 ~~~~v~~la~~l~~~l~~~~-------~p~~--v~llvaG~D~-~gp~Ly~idp~G~~~~~~~~aiGsgs~~a~~~Le~~ 141 (234)
T 3unf_H 72 REPRVATVTRILRQTLFRYQ-------GHVG--ASLVVGGVDL-NGPQLYEVHPHGSYSRLPFTALGSGQGAAVALLEDR 141 (234)
T ss_dssp SCCCHHHHHHHHHHHHHHTT-------TCSC--EEEEEEEEET-TEEEEEEECTTSCEEECSEEEEETTHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHhcC-------CCcc--EEEEEEEEeC-CCCEEEEECCCCCEEeccEEEEcCCchhhHHHHHhc
Confidence 99999999999999999753 5877 5789999998 789999999999999999999999999999999999
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHHhcCcCCCcEEEEEEECCCeEEeChhHHHHH
Q psy14210 246 YRPDLSEEEAYALATSAIYHACRRDIHSGGCVRLYKINGQGWQQVLSRDVKDI 298 (312)
Q Consensus 246 y~~~ms~eEAi~la~kaL~~a~~rD~~sg~~ieI~iItk~G~~~l~~~eI~~~ 298 (312)
|+++||+|||++++++||..++++|..++++++|++|+++|++++++++++.-
T Consensus 142 ~~~~ms~eeA~~la~~al~~~~~~D~~sg~~iev~vi~~dg~~~l~~~~i~~~ 194 (234)
T 3unf_H 142 FQPNMTLEAAQELLVEAITAGILSDLGSGGNVDACVITAGGAKLQRALSTPTE 194 (234)
T ss_dssp CCSSCCHHHHHHHHHHHHHHHHHHBTTCCSCEEEEEEESSCEEEEEEEECCCC
T ss_pred cCCCCCHHHHHHHHHHHHHHHHhhcCCCCCcEEEEEEECCCEEEeCceecccc
Confidence 99999999999999999999999999999999999999999999998887653
No 33
>1ryp_H 20S proteasome; multicatalytic proteinase, protein degradation, antigen processing, hydrolase, protease; 1.90A {Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 3nzj_N* 3nzw_N* 3nzx_N* 1vsy_H 3l5q_B 1g65_N* 1fnt_H 1g0u_N* 1jd2_N* 1z7q_H 2f16_N* 2fak_N* 2fny_N* 2gpl_N* 2zcy_N* 3bdm_N* 3d29_N* 3dy3_N* 3dy4_N* 3e47_N* ...
Probab=100.00 E-value=4.5e-43 Score=311.84 Aligned_cols=190 Identities=23% Similarity=0.379 Sum_probs=181.1
Q ss_pred cccCceEEEEEcCCeEEEEEcCCccCCcccccccccccccccCCCcccccCccccCCcccCCCccccccccccccccccC
Q psy14210 2 FITGTTTLGFRYPEGIILATDSRATANDLIVSQKLNKFCQSSLGDSCELLHPVYTGGERCGQSYSQRSHCVAETQQDHFL 81 (312)
Q Consensus 2 ~~~g~t~~~~~~~~gv~~~~d~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (312)
+.+|||+|||+++||||||+|+|+++|.++.+++.+|
T Consensus 6 v~~Gtt~vgi~~~dgVvlaaD~r~~~g~~~~~~~~~K------------------------------------------- 42 (205)
T 1ryp_H 6 VSLGASIMAVTFKDGVILGADSRTTTGAYIANRVTDK------------------------------------------- 42 (205)
T ss_dssp CBCCCCEEEEEETTEEEEEECCCEEETTEEEESSCCC-------------------------------------------
T ss_pred CcCCceEEEEEeCCEEEEEEcCCcccCcEEEcCCcCc-------------------------------------------
Confidence 5789999999999999999999999999999988888
Q ss_pred CCCCCCCccccccCCccccccccccCCccccCCCCCCCCCCCCcceEEEecCeEEEEEeCChhHHHHHHHHHHHHhhhhh
Q psy14210 82 SPPLSQSSQHIISGDSCELLHPVYTGGERCGPFSQSSTVPHNTSFQVIPVSSSILCTLAGNAADCVYWLHSLAKECKGYE 161 (312)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~dgVv~~~~~~~~~~~~~~~~KI~~I~d~i~~a~sG~~aD~q~l~~~lr~~~~~~~ 161 (312)
|++|++|++|++||..+|++.+.++++.+++.|+
T Consensus 43 ----------------------------------------------i~~i~~~i~~~~aG~~aD~~~l~~~~~~~~~~~~ 76 (205)
T 1ryp_H 43 ----------------------------------------------LTRVHDKIWCCRSGSAADTQAIADIVQYHLELYT 76 (205)
T ss_dssp ----------------------------------------------EEEEETTEEEEEEEBHHHHHHHHHHHHHHHHHHH
T ss_pred ----------------------------------------------eEEcCCCEEEEccCCHHHHHHHHHHHHHHHHHHH
Confidence 8999999999999999999999999999999999
Q ss_pred hhcCCccCHHHHHHHHHHHHHHhccCCCCCCCCCCcccceeeeEEecCCCCeEEEEcCCceEEecCeeeEccChHHHHHH
Q psy14210 162 CKYRTGMTIRHAANLLVNMVRKYRTGNHSSKIPNGLSFGTLMAAYDEILGPQLYMLDNTGLLIEGTKFCVGSGAEYAQAI 241 (312)
Q Consensus 162 ~~~g~~i~v~~la~~ls~~l~~~~~~~~~~~rP~gls~~~IIaG~D~~~gp~Ly~iDpsGs~~e~~~~AiGsGs~~a~~~ 241 (312)
+++++ ++++.+|+++++++|.+|+ + |+ +++|+||||+..+|+||.+||+|++.++++.++|+|+.+++++
T Consensus 77 ~~~~~-~~v~~la~~l~~~~~~~~~------~-~~--~~~lvaG~D~~~gp~Ly~id~~G~~~~~~~~aiGsgs~~a~~~ 146 (205)
T 1ryp_H 77 SQYGT-PSTETAASVFKELCYENKD------N-LT--AGIIVAGYDDKNKGEVYTIPLGGSVHKLPYAIAGSGSTFIYGY 146 (205)
T ss_dssp HHHSS-CCHHHHHHHHHHHHHHTTT------T-CC--EEEEEEEEETTTEEEEEEECTTSCCEEESEEEESGGGGGGHHH
T ss_pred HHhCC-CCHHHHHHHHHHHHHhhhc------C-ce--EEEEEEEEecCCCcEEEEECCCccEEecCEEEEEecHHHHHHH
Confidence 99999 9999999999999999987 2 55 6789999997568999999999999999999999999999999
Q ss_pred HHhhCCCCCCHHHHHHHHHHHHHHHHHhcCcCCCcEEEEEEECCCeEEe
Q psy14210 242 LDTDYRPDLSEEEAYALATSAIYHACRRDIHSGGCVRLYKINGQGWQQV 290 (312)
Q Consensus 242 Le~~y~~~ms~eEAi~la~kaL~~a~~rD~~sg~~ieI~iItk~G~~~l 290 (312)
||+.|+++||+|||++++++||..+.+||..++++++|++|+++|++..
T Consensus 147 Le~~~~~~~s~eea~~l~~~al~~a~~~d~~sg~~i~v~vi~~~g~~~~ 195 (205)
T 1ryp_H 147 CDKNFRENMSKEETVDFIKHSLSQAIKWDGSSGGVIRMVVLTAAGVERL 195 (205)
T ss_dssp HHHHCCTTCCHHHHHHHHHHHHHHHHHHBTTCCSCEEEEEEETTEEEEE
T ss_pred HHhccCCCCCHHHHHHHHHHHHHHHHHhCCccCCeEEEEEEcCCCEEEE
Confidence 9999999999999999999999999999999999999999999997654
No 34
>1ryp_M 20S proteasome; multicatalytic proteinase, protein degradation, antigen processing, hydrolase, protease; 1.90A {Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 1fnt_M* 1jd2_L* 1g65_L 1vsy_M 1z7q_M 2f16_L* 2fak_L* 2fny_L* 2gpl_L* 3d29_L* 3dy3_L* 3dy4_L* 3e47_L* 3gpj_L* 3gpt_L* 3gpw_L* 3hye_L* 3l5q_Q 3mg0_L* 3mg4_L* ...
Probab=100.00 E-value=8.5e-43 Score=314.05 Aligned_cols=192 Identities=23% Similarity=0.230 Sum_probs=181.6
Q ss_pred cccCceEEEEEcCCeEEEEEcCCccCCcccccccccccccccCCCcccccCccccCCcccCCCccccccccccccccccC
Q psy14210 2 FITGTTTLGFRYPEGIILATDSRATANDLIVSQKLNKFCQSSLGDSCELLHPVYTGGERCGQSYSQRSHCVAETQQDHFL 81 (312)
Q Consensus 2 ~~~g~t~~~~~~~~gv~~~~d~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (312)
+.+|||+|||+++||||||+|+|+++|.++.+++++|
T Consensus 6 v~~Gtt~vgi~~~dgVvlaaD~r~~~g~~i~~~~~~K------------------------------------------- 42 (222)
T 1ryp_M 6 GDNGGTILGIAGEDFAVLAGDTRNITDYSINSRYEPK------------------------------------------- 42 (222)
T ss_dssp CCCCCEEEEEECSSCEEEEEECCEEETTEEEESCCCC-------------------------------------------
T ss_pred ccCCccEEEEEeCCEEEEEEecccccCCEecCCCcCc-------------------------------------------
Confidence 5689999999999999999999999999999999888
Q ss_pred CCCCCCCccccccCCccccccccccCCccccCCCCCCCCCCCCcceEEEecCeEEEEEeCChhHHHHHHHHHHHHhhhhh
Q psy14210 82 SPPLSQSSQHIISGDSCELLHPVYTGGERCGPFSQSSTVPHNTSFQVIPVSSSILCTLAGNAADCVYWLHSLAKECKGYE 161 (312)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~dgVv~~~~~~~~~~~~~~~~KI~~I~d~i~~a~sG~~aD~q~l~~~lr~~~~~~~ 161 (312)
||+|++|++|+++|..+|++.|.++++.+++.|+
T Consensus 43 ----------------------------------------------i~~i~~~i~~~~aG~~aD~~~l~~~~~~~~~~~~ 76 (222)
T 1ryp_M 43 ----------------------------------------------VFDCGDNIVMSANGFAADGDALVKRFKNSVKWYH 76 (222)
T ss_dssp ----------------------------------------------CEEEETTEEEEEEESHHHHHHHHHHHHHHHHHHH
T ss_pred ----------------------------------------------EEEeCCCEEEEccccHHHHHHHHHHHHHHHHHHH
Confidence 8999999999999999999999999999999999
Q ss_pred hhcC-CccCHHHHHHHHHHHHHHhccCCCCCCCCCCcccceeeeEEecCCCCeEEEEcCCceEEecCeeeEccChHHHHH
Q psy14210 162 CKYR-TGMTIRHAANLLVNMVRKYRTGNHSSKIPNGLSFGTLMAAYDEILGPQLYMLDNTGLLIEGTKFCVGSGAEYAQA 240 (312)
Q Consensus 162 ~~~g-~~i~v~~la~~ls~~l~~~~~~~~~~~rP~gls~~~IIaG~D~~~gp~Ly~iDpsGs~~e~~~~AiGsGs~~a~~ 240 (312)
++++ ++++++.+|+++++++|.++. +||+ +++||||||++++|+||.+||+|++.++++.|+|+|+.++++
T Consensus 77 ~~~~~~~~~v~~la~~l~~~ly~~r~------~P~~--v~~ivaG~D~~g~p~Ly~~dp~G~~~~~~~~a~Gsg~~~a~~ 148 (222)
T 1ryp_M 77 FDHNDKKLSINSAARNIQHLLYGKRF------FPYY--VHTIIAGLDEDGKGAVYSFDPVGSYEREQCRAGGAAASLIMP 148 (222)
T ss_dssp HHTTTCCCCHHHHHHHHHHHHHTTTT------SCCC--EEEEEEEECTTSCEEEEEECTTSCEEEESEEEEETTHHHHHH
T ss_pred HHcCCCCCCHHHHHHHHHHHHHhcCC------CCce--EEEEEEEEcCCCCeEEEEECCCcCEEecCEEEEcCcHHHHHH
Confidence 9999 999999999999999987554 7988 578999999756699999999999999999999999999999
Q ss_pred HHHhh-----------------CCCCCCHHHHHHHHHHHHHHHHHhcCcCCCcEEEEEEECCCeEEe
Q psy14210 241 ILDTD-----------------YRPDLSEEEAYALATSAIYHACRRDIHSGGCVRLYKINGQGWQQV 290 (312)
Q Consensus 241 ~Le~~-----------------y~~~ms~eEAi~la~kaL~~a~~rD~~sg~~ieI~iItk~G~~~l 290 (312)
+||+. |+++||+|||++++++||..+.+||..++++++|++|+++|++..
T Consensus 149 ~Le~~~~~~~~~~~~~~~~~~~~~~~~s~eeA~~la~~al~~a~~rd~~sg~~i~v~vi~~~g~~~~ 215 (222)
T 1ryp_M 149 FLDNQVNFKNQYEPGTNGKVKKPLKYLSVEEVIKLVRDSFTSATERHIQVGDGLEILIVTKDGVRKE 215 (222)
T ss_dssp HHHHHTSCTTCBCTTSTTCSBCCCCCCCHHHHHHHHHHHHHHHHHHBTTCCSEEEEEEEETTEEEEE
T ss_pred HHhcccccccccccccccccccCCCCCCHHHHHHHHHHHHHHHHHhcccCCCcEEEEEEcCCCeEEE
Confidence 99998 889999999999999999999999999999999999999998653
No 35
>1iru_J 20S proteasome; cell cycle, immune response, proteolysis, ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4 PDB: 3unb_I* 3une_I 3unf_I* 3unh_I
Probab=100.00 E-value=1.4e-42 Score=308.53 Aligned_cols=192 Identities=20% Similarity=0.249 Sum_probs=179.6
Q ss_pred CcccCceEEEEEcCCeEEEEEcCCccCCcccccccccccccccCCCcccccCccccCCcccCCCcccccccccccccccc
Q psy14210 1 MFITGTTTLGFRYPEGIILATDSRATANDLIVSQKLNKFCQSSLGDSCELLHPVYTGGERCGQSYSQRSHCVAETQQDHF 80 (312)
Q Consensus 1 ~~~~g~t~~~~~~~~gv~~~~d~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (312)
|..+|||+|||+++||||||+|+|+++|.++.+++.+|
T Consensus 4 ~~~~Gtt~vgi~~~dgVvlaaD~r~~~g~~~~~~~~~K------------------------------------------ 41 (205)
T 1iru_J 4 MSYNGGAVMAMKGKNCVAIAADRRFGIQAQLVTTDFQK------------------------------------------ 41 (205)
T ss_dssp TTSSCCEEEEEECSSEEEEEEECCEEETTEEEESCCCC------------------------------------------
T ss_pred ccCCCCeEEEEEeCCEEEEEECCccccCCeEeecCCcc------------------------------------------
Confidence 45789999999999999999999999999998888888
Q ss_pred CCCCCCCCccccccCCccccccccccCCccccCCCCCCCCCCCCcceEEEecCeEEEEEeCChhHHHHHHHHHHHHhhhh
Q psy14210 81 LSPPLSQSSQHIISGDSCELLHPVYTGGERCGPFSQSSTVPHNTSFQVIPVSSSILCTLAGNAADCVYWLHSLAKECKGY 160 (312)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~dgVv~~~~~~~~~~~~~~~~KI~~I~d~i~~a~sG~~aD~q~l~~~lr~~~~~~ 160 (312)
|++|++|++|++||..+|++.+.++++.+++.|
T Consensus 42 -----------------------------------------------i~~i~~~i~~~~aG~~aD~~~l~~~~~~~~~~~ 74 (205)
T 1iru_J 42 -----------------------------------------------IFPMGDRLYIGLAGLATDVQTVAQRLKFRLNLY 74 (205)
T ss_dssp -----------------------------------------------EEECSTTEEEECCSCHHHHHHHHHHHHHHHHHH
T ss_pred -----------------------------------------------EEEeCCCEEEEccccHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999
Q ss_pred hhhcCCccCHHHHHHHHHHHHHHhccCCCCCCCCCCcccceeeeEEec-CCCCeEEEEcCCceEEecC-eeeEccChHHH
Q psy14210 161 ECKYRTGMTIRHAANLLVNMVRKYRTGNHSSKIPNGLSFGTLMAAYDE-ILGPQLYMLDNTGLLIEGT-KFCVGSGAEYA 238 (312)
Q Consensus 161 ~~~~g~~i~v~~la~~ls~~l~~~~~~~~~~~rP~gls~~~IIaG~D~-~~gp~Ly~iDpsGs~~e~~-~~AiGsGs~~a 238 (312)
+++++++++++.+|+++++++|.++. .||+ +++|+||||+ +++|+||.+||+|+++++. +.++|+|+.++
T Consensus 75 ~~~~~~~~~v~~la~~l~~~~y~~r~------~P~~--v~~lvaG~D~~~~~p~Ly~idp~G~~~~~~~~~aiG~gs~~a 146 (205)
T 1iru_J 75 ELKEGRQIKPYTLMSMVANLLYEKRF------GPYY--TEPVIAGLDPKTFKPFICSLDLIGCPMVTDDFVVSGTCAEQM 146 (205)
T ss_dssp HHHSSSCCCHHHHHHHHHHHHHTTTT------SCCS--CCCEEEEECTTSCCEEEEEECTTCCEEECSSEEEEETTHHHH
T ss_pred HhhcCCCCCHHHHHHHHHHHHHHhcC------CCce--EEEEEEEEeCCCCCeEEEEECCCCCccccCCeeEeeeCHHHH
Confidence 99999999999999999999976543 4988 5789999995 4789999999999998775 59999999999
Q ss_pred HHHHHhhCCCCCCHHHHHHHHHHHHHHHHHhcCcCCCcEEEEEEECCCeEE
Q psy14210 239 QAILDTDYRPDLSEEEAYALATSAIYHACRRDIHSGGCVRLYKINGQGWQQ 289 (312)
Q Consensus 239 ~~~Le~~y~~~ms~eEAi~la~kaL~~a~~rD~~sg~~ieI~iItk~G~~~ 289 (312)
+++||+.|+++||+|||++++++||..+.+||..++++++|++|+++|++.
T Consensus 147 ~~~Le~~~~~~~s~eea~~l~~~al~~~~~~d~~s~~~i~v~vi~~~g~~~ 197 (205)
T 1iru_J 147 YGMCESLWEPNMDPDHLFETISQAMLNAVDRDAVSGMGVIVHIIEKDKITT 197 (205)
T ss_dssp HHHHHHHCCSSCCHHHHHHHHHHHHHHHGGGBTTSCSCEEEEEEESSBEEE
T ss_pred HHHHhcccCCCCCHHHHHHHHHHHHHHHHHhCcccCCceEEEEEcCCCEEE
Confidence 999999999999999999999999999999999999999999999999765
No 36
>2jay_A Proteasome; hydrolase; 1.99A {Mycobacterium tuberculosis} PDB: 3mka_C 3mi0_C* 2fhg_H* 2fhh_H 3krd_C* 3mfe_G 3hfa_H* 3h6i_C 3h6f_C 3hf9_H 3mfe_H
Probab=100.00 E-value=2.1e-43 Score=330.41 Aligned_cols=211 Identities=25% Similarity=0.302 Sum_probs=175.3
Q ss_pred cccCceEEEEEcCCeEEEEEcCCccCCcccccccccccccccCCCcccccCccccCCcccCCCccccccccccccccccC
Q psy14210 2 FITGTTTLGFRYPEGIILATDSRATANDLIVSQKLNKFCQSSLGDSCELLHPVYTGGERCGQSYSQRSHCVAETQQDHFL 81 (312)
Q Consensus 2 ~~~g~t~~~~~~~~gv~~~~d~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (312)
+.+|||+|||+++||||||+|+|+|+|.++.++.++|
T Consensus 54 v~~GtTiVgi~~kdGVVlAaD~r~t~g~li~~~~~~K------------------------------------------- 90 (291)
T 2jay_A 54 LPHGTTIVALKYPGGVVMAGDRRSTQGNMISGRDVRK------------------------------------------- 90 (291)
T ss_dssp ----CCEEEEEETTEEEEEECCC--------CCCCCC-------------------------------------------
T ss_pred ccCCcEEEEEEECCEEEEEECCCccCCCeeecCCccc-------------------------------------------
Confidence 4689999999999999999999999999999999889
Q ss_pred CCCCCCCccccccCCccccccccccCCccccCCCCCCCCCCCCcceEEEecCeEEEEEeCChhHHHHHHHHHHHHhhhhh
Q psy14210 82 SPPLSQSSQHIISGDSCELLHPVYTGGERCGPFSQSSTVPHNTSFQVIPVSSSILCTLAGNAADCVYWLHSLAKECKGYE 161 (312)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~dgVv~~~~~~~~~~~~~~~~KI~~I~d~i~~a~sG~~aD~q~l~~~lr~~~~~~~ 161 (312)
||+|++|++|++||..+|++.|+++++.+++.|+
T Consensus 91 ----------------------------------------------I~~i~d~i~~~~aG~~aD~~~l~~~lr~~~~~y~ 124 (291)
T 2jay_A 91 ----------------------------------------------VYITDDYTATGIAGTAAVAVEFARLYAVELEHYE 124 (291)
T ss_dssp ----------------------------------------------EEEEETTEEEEEESCHHHHHHHHHHHHHHHHHHH
T ss_pred ----------------------------------------------EEEeCCcEEEEEcccHHHHHHHHHHHHHHHHHhh
Confidence 8999999999999999999999999999999999
Q ss_pred hhcCCccCHHHHHHHHHHHHHHhccCCCCCCCCCCcccceeeeEEecCCC-----CeEEEEcCCceEE--ecCeeeEccC
Q psy14210 162 CKYRTGMTIRHAANLLVNMVRKYRTGNHSSKIPNGLSFGTLMAAYDEILG-----PQLYMLDNTGLLI--EGTKFCVGSG 234 (312)
Q Consensus 162 ~~~g~~i~v~~la~~ls~~l~~~~~~~~~~~rP~gls~~~IIaG~D~~~g-----p~Ly~iDpsGs~~--e~~~~AiGsG 234 (312)
+.++.+++++.+++++++++|.+++ ..+|||+ +++||||||+.++ |+||++||+|+++ ++++.|+|+|
T Consensus 125 ~~~~~~i~v~~la~~la~~l~~~~~---~~~rpf~--v~~lvaG~D~~g~~~~~~p~Ly~iDp~G~~~e~~~~~~aiGsg 199 (291)
T 2jay_A 125 KLEGVPLTFAGKINRLAIMVRGNLA---AAMQGLL--ALPLLAGYDIHASDPQSAGRIVSFDAAGGWNIEEEGYQAVGSG 199 (291)
T ss_dssp HHHSSCCCHHHHHHHHHHHHHTCHH---HHHHTCC--CEEEEEEECTTCSCSTTCEEEEEECTTSCEEECSSSEEEESTT
T ss_pred hhcCCCCCHHHHHHHHHHHHHHhhh---hhccccc--eeEEEEEEeCCCCcCCCCCEEEEECCCCcEEecCCCEEEEecC
Confidence 9999999999999999999999875 2468988 5689999998545 8999999999999 8899999999
Q ss_pred hHHHHHHHHhhCCCCCCHHHHHHHHHHHHHHHHHhcCcCCCc--E-----EEEEEECCCeEEeChhHHHHHHHHHhcCC
Q psy14210 235 AEYAQAILDTDYRPDLSEEEAYALATSAIYHACRRDIHSGGC--V-----RLYKINGQGWQQVLSRDVKDIYNDRKEAP 306 (312)
Q Consensus 235 s~~a~~~Le~~y~~~ms~eEAi~la~kaL~~a~~rD~~sg~~--i-----eI~iItk~G~~~l~~~eI~~~l~~~~~~~ 306 (312)
+.+++++||+.|+++||+|||++++++||+.++++|..+++. + +|++|+++|+++++++||+++++.+.++.
T Consensus 200 s~~a~~~Le~~~~~~ms~eEAi~la~~aL~~a~~~D~~sg~~e~vr~~~~~v~vi~~dg~~~l~~~ei~~~~~~~~~~~ 278 (291)
T 2jay_A 200 SLFAKSSMKKLYSQVTDGDSGLRVAVEALYDAADDDSATGGPDLVRGIFPTAVIIDADGAVDVPESRIAELARAIIESR 278 (291)
T ss_dssp HHHHHHHHHHHGGGCCSHHHHHHHHHHHHHHC----------------CCEEEEEETTEEEECCHHHHHHHHHHC----
T ss_pred HHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHhhCCCCCCcccccccCCEEEEEECCCeEEcCHHHHHHHHHHHHHhh
Confidence 999999999999999999999999999999999999887654 2 69999999999999999999999886553
No 37
>3nzj_F Proteasome component C1; ubiquitin, protein degradation, N-terminal nucleophilic HYDR 19S regulatory particle; HET: TY5 TRO MES; 2.40A {Saccharomyces cerevisiae} PDB: 1z7q_G* 3nzw_F* 3nzx_F* 3un4_F* 3un8_F* 4b4t_G 4g4s_G* 3bdm_F* 1fnt_G* 2zcy_F*
Probab=100.00 E-value=1e-42 Score=325.17 Aligned_cols=203 Identities=23% Similarity=0.275 Sum_probs=186.4
Q ss_pred cccCceEEEEEcCCeEEEEEcCCccCCcccccccccccccccCCCcccccCccccCCcccCCCccccccccccccccccC
Q psy14210 2 FITGTTTLGFRYPEGIILATDSRATANDLIVSQKLNKFCQSSLGDSCELLHPVYTGGERCGQSYSQRSHCVAETQQDHFL 81 (312)
Q Consensus 2 ~~~g~t~~~~~~~~gv~~~~d~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (312)
+.+|||+|||+++||||||+|+|+++|.++.+ .++|
T Consensus 31 v~~GtT~Vgik~kdGVVlAaD~r~t~gl~~~~-~~~K------------------------------------------- 66 (288)
T 3nzj_F 31 VENGTTSIGIKCNDGVVFAVEKLITSKLLVPQ-KNVK------------------------------------------- 66 (288)
T ss_dssp HHTSCCEEEEEETTEEEEEEEEEECCTTBCTT-CSCC-------------------------------------------
T ss_pred HhcCCcEEEEEECCEEEEEEcCCcccCCcccc-ccce-------------------------------------------
Confidence 35899999999999999999999999876654 5677
Q ss_pred CCCCCCCccccccCCccccccccccCCccccCCCCCCCCCCCCcceEEEecCeEEEEEeCChhHHHHHHHHHHHHhhhhh
Q psy14210 82 SPPLSQSSQHIISGDSCELLHPVYTGGERCGPFSQSSTVPHNTSFQVIPVSSSILCTLAGNAADCVYWLHSLAKECKGYE 161 (312)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~dgVv~~~~~~~~~~~~~~~~KI~~I~d~i~~a~sG~~aD~q~l~~~lr~~~~~~~ 161 (312)
||+|++||+|+++|+.+|++.|+++++.+++.|+
T Consensus 67 ----------------------------------------------I~~I~d~i~~~~aG~~aD~~~l~~~lr~e~~~y~ 100 (288)
T 3nzj_F 67 ----------------------------------------------IQVVDRHIGCVYSGLIPDGRHLVNRGREEAASFK 100 (288)
T ss_dssp ----------------------------------------------CEEETTTEEEEEEECHHHHHHHHHHHHHHHHHHH
T ss_pred ----------------------------------------------EEEEcCCEEEEecCcHHHHHHHHHHHHHHHHHHH
Confidence 8999999999999999999999999999999999
Q ss_pred hhcCCccCHHHHHHHHHHHHHHhccCCCCCCCCCCcccceeeeEEecCCCCeEEEEcCCceEEecCeeeEccChHHHHHH
Q psy14210 162 CKYRTGMTIRHAANLLVNMVRKYRTGNHSSKIPNGLSFGTLMAAYDEILGPQLYMLDNTGLLIEGTKFCVGSGAEYAQAI 241 (312)
Q Consensus 162 ~~~g~~i~v~~la~~ls~~l~~~~~~~~~~~rP~gls~~~IIaG~D~~~gp~Ly~iDpsGs~~e~~~~AiGsGs~~a~~~ 241 (312)
++++++++++.+|+++++++|.+++ ++++|||+ +++||||||+ .||+||++||+|++++++++++|+|+++++++
T Consensus 101 ~~~~~~i~v~~lA~~l~~~l~~yt~--~~~~rP~g--v~~lvaG~D~-~Gp~Ly~iDp~G~~~~~~~~aiGsgs~~a~~~ 175 (288)
T 3nzj_F 101 KLYKTPIPIPAFADRLGQYVQAHTL--YNSVRPFG--VSTIFGGVDK-NGAHLYMLEPSGSYWGYKGAATGKGRQSAKAE 175 (288)
T ss_dssp HHHSSCCCHHHHHHHHHHHHHHTTS--CTTBCCCC--EEEEEEEEET-TEEEEEEECTTSCEEEBSEEEESTTHHHHHHH
T ss_pred HHcCCcCCHHHHHHHHHHHHHHHHH--hccCCCce--EEEEEEEEeC-CCCEEEEECCCCCEEEcCEEEEcCcHHHHHHH
Confidence 9999999999999999999999999 88899998 5789999998 78999999999999999999999999999999
Q ss_pred HHhh---CCCCCCHHHHHHHHHHHHHHHHHhcCcCCCcEEEEEEEC---CCeEEe-ChhHHHHHH
Q psy14210 242 LDTD---YRPDLSEEEAYALATSAIYHACRRDIHSGGCVRLYKING---QGWQQV-LSRDVKDIY 299 (312)
Q Consensus 242 Le~~---y~~~ms~eEAi~la~kaL~~a~~rD~~sg~~ieI~iItk---~G~~~l-~~~eI~~~l 299 (312)
||+. |+++||++||++++++||..+++++..++..++|++|++ +|.+++ +.+++++..
T Consensus 176 Lek~~~~~~~~ms~eEAv~la~~al~~a~~~~~~~~~~iev~vIt~~~~~~~~~~vp~~~~~~~~ 240 (288)
T 3nzj_F 176 LEKLVDHHPEGLSAREAVKQAAKIIYLAHEDNKEKDFELEISWCSLSETNGLHKFVKGDLLQEAI 240 (288)
T ss_dssp HHHHHHHCTTCCCHHHHHHHHHHHHHHHGGGGTTSEEEEEEEEEETTTSTTCCEECCHHHHHHHH
T ss_pred HHHhccccCCCCCHHHHHHHHHHHHHHHHhcccCCCCeEEEEEEEecCCCceEEECCHHHHHHHH
Confidence 9999 999999999999999999999999988888999999998 355554 555544433
No 38
>1iru_K 20S proteasome; cell cycle, immune response, proteolysis, ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4 PDB: 3unb_J* 3une_J 3unf_J* 3unh_J
Probab=100.00 E-value=1.6e-42 Score=307.26 Aligned_cols=191 Identities=25% Similarity=0.336 Sum_probs=179.8
Q ss_pred ceEEEEEcCCeEEEEEcCCccCCcccccccccccccccCCCcccccCccccCCcccCCCccccccccccccccccCCCCC
Q psy14210 6 TTTLGFRYPEGIILATDSRATANDLIVSQKLNKFCQSSLGDSCELLHPVYTGGERCGQSYSQRSHCVAETQQDHFLSPPL 85 (312)
Q Consensus 6 ~t~~~~~~~~gv~~~~d~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (312)
||+|||+++||||||+|+|+++|.++.+++.+|
T Consensus 2 tt~vgi~~~dgVvlaaD~r~~~g~~~~~~~~~K----------------------------------------------- 34 (201)
T 1iru_K 2 EYLIGIQGPDYVLVASDRVAASNIVQMKDDHDK----------------------------------------------- 34 (201)
T ss_dssp CCEEEEECSSEEEEEEECCEEETTEEEESSCCC-----------------------------------------------
T ss_pred ceEEEEEeCCEEEEEEcCccccCcEEEccCcce-----------------------------------------------
Confidence 899999999999999999999999999999888
Q ss_pred CCCccccccCCccccccccccCCccccCCCCCCCCCCCCcceEEEecCeEEEEEeCChhHHHHHHHHHHHHhhhhhhhcC
Q psy14210 86 SQSSQHIISGDSCELLHPVYTGGERCGPFSQSSTVPHNTSFQVIPVSSSILCTLAGNAADCVYWLHSLAKECKGYECKYR 165 (312)
Q Consensus 86 ~~~~~~~~~~~~~~~~~~~~~dgVv~~~~~~~~~~~~~~~~KI~~I~d~i~~a~sG~~aD~q~l~~~lr~~~~~~~~~~g 165 (312)
|++|++|++++++|..+|++.+.++++.+++.|+++++
T Consensus 35 ------------------------------------------i~~i~~~i~~~~aG~~aD~~~l~~~~~~~~~~~~~~~~ 72 (201)
T 1iru_K 35 ------------------------------------------MFKMSEKILLLCVGEAGDTVQFAEYIQKNVQLYKMRNG 72 (201)
T ss_dssp ------------------------------------------EEECSSSEEEEEEESTTHHHHHHHHHHHHHHHHHHHHS
T ss_pred ------------------------------------------EEEecCCEEEEeCcCHHHHHHHHHHHHHHHHHHHHHcC
Confidence 89999999999999999999999999999999999999
Q ss_pred CccCHHHHHHHHHHHH-HHhccCCCCCCCCCCcccceeeeEEecCCCCeEEEEcCCceEEecCeeeEccChHHHHHHHHh
Q psy14210 166 TGMTIRHAANLLVNMV-RKYRTGNHSSKIPNGLSFGTLMAAYDEILGPQLYMLDNTGLLIEGTKFCVGSGAEYAQAILDT 244 (312)
Q Consensus 166 ~~i~v~~la~~ls~~l-~~~~~~~~~~~rP~gls~~~IIaG~D~~~gp~Ly~iDpsGs~~e~~~~AiGsGs~~a~~~Le~ 244 (312)
++++++.+++++++.+ +..+. ++||+ +++|+||||+.++|+||.+||+|++.++++.|+|+|+.+++++||+
T Consensus 73 ~~~~v~~~a~~~~~~l~~~~~~-----~~p~~--~~~lvaG~D~~~gp~Ly~id~~G~~~~~~~~aiGsgs~~a~~~Le~ 145 (201)
T 1iru_K 73 YELSPTAAANFTRRNLADCLRS-----RTPYH--VNLLLAGYDEHEGPALYYMDYLAALAKAPFAAHGYGAFLTLSILDR 145 (201)
T ss_dssp SCCCHHHHHHHHHHHHHHHHTS-----SSCCC--EEEEEEEEETTTEEEEEEECTTCCEEECSEEEESHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHHhc-----CCCcc--EEEEEEEEeCCCCeEEEEECCCcCeEECCEEEECCcHHHHHHHHHh
Confidence 9999999999998876 44333 37988 5789999997568999999999999999999999999999999999
Q ss_pred hCCCCCCHHHHHHHHHHHHHHHHHhcCcCCCcEEEEEEECCCeEEeCh
Q psy14210 245 DYRPDLSEEEAYALATSAIYHACRRDIHSGGCVRLYKINGQGWQQVLS 292 (312)
Q Consensus 245 ~y~~~ms~eEAi~la~kaL~~a~~rD~~sg~~ieI~iItk~G~~~l~~ 292 (312)
.|+++||+|||++++++||..+.+||..++++++|++|+++|+++++.
T Consensus 146 ~~~~~~s~eea~~l~~~al~~a~~rd~~sg~~i~v~vi~~~g~~~~~~ 193 (201)
T 1iru_K 146 YYTPTISRERAVELLRKCLEELQKRFILNLPTFSVRIIDKNGIHDLDN 193 (201)
T ss_dssp HCCTTCCHHHHHHHHHHHHHHHHHTBCBCCCCEEEEEEETTEEECCCC
T ss_pred cccCCCCHHHHHHHHHHHHHHHHhhccccCCceEEEEEcCCCeEEeec
Confidence 999999999999999999999999999999999999999999988764
No 39
>3unf_N Proteasome subunit beta type-9; antigen presentation, drug development, protein degradation, hydrolase-hydrolase inhibitor complex; HET: 04C; 2.90A {Mus musculus} PDB: 3unh_N
Probab=100.00 E-value=5.3e-43 Score=309.61 Aligned_cols=194 Identities=28% Similarity=0.441 Sum_probs=181.7
Q ss_pred ceEEEEEcCCeEEEEEcCCccCCcccccccccccccccCCCcccccCccccCCcccCCCccccccccccccccccCCCCC
Q psy14210 6 TTTLGFRYPEGIILATDSRATANDLIVSQKLNKFCQSSLGDSCELLHPVYTGGERCGQSYSQRSHCVAETQQDHFLSPPL 85 (312)
Q Consensus 6 ~t~~~~~~~~gv~~~~d~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (312)
||+|||+++||||||+|+|+++|.++.+++++|
T Consensus 1 TT~vgi~~~dgVvlaaD~r~~~g~~~~~~~~~K----------------------------------------------- 33 (199)
T 3unf_N 1 TTIMAVEFDGGVVVGSDSRVSAGTAVVNRVFDK----------------------------------------------- 33 (199)
T ss_dssp CEEEEEECSSCEEEEECCCEEETTEEEESSCCC-----------------------------------------------
T ss_pred CeEEEEEeCCeEEEEECCcccCCceeEccccCc-----------------------------------------------
Confidence 899999999999999999999999999999888
Q ss_pred CCCccccccCCccccccccccCCccccCCCCCCCCCCCCcceEEEecCeEEEEEeCChhHHHHHHHHHHHHhhhhhhhcC
Q psy14210 86 SQSSQHIISGDSCELLHPVYTGGERCGPFSQSSTVPHNTSFQVIPVSSSILCTLAGNAADCVYWLHSLAKECKGYECKYR 165 (312)
Q Consensus 86 ~~~~~~~~~~~~~~~~~~~~~dgVv~~~~~~~~~~~~~~~~KI~~I~d~i~~a~sG~~aD~q~l~~~lr~~~~~~~~~~g 165 (312)
||+|++|++|+++|..+|++.+.++++.+++.|+++++
T Consensus 34 ------------------------------------------i~~i~~~i~~~~aG~~aD~~~l~~~~~~~~~~~~~~~~ 71 (199)
T 3unf_N 34 ------------------------------------------LSPLHQRIFCALSGSAADAQAIADMAAYQLELHGLELE 71 (199)
T ss_dssp ------------------------------------------EEEEETTEEEEECSCHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred ------------------------------------------eEEcCCCEEEEecccHHHHHHHHHHHHHHHHHHHHHhC
Confidence 99999999999999999999999999999999999999
Q ss_pred CccCHHHHHHHHHHHHHHhccCCCCCCCCCCcccceeeeEEecCCCCeEEEEcCCceEEecCee-eEccChHHHHHHHHh
Q psy14210 166 TGMTIRHAANLLVNMVRKYRTGNHSSKIPNGLSFGTLMAAYDEILGPQLYMLDNTGLLIEGTKF-CVGSGAEYAQAILDT 244 (312)
Q Consensus 166 ~~i~v~~la~~ls~~l~~~~~~~~~~~rP~gls~~~IIaG~D~~~gp~Ly~iDpsGs~~e~~~~-AiGsGs~~a~~~Le~ 244 (312)
++++++.+++++++++|.++ |||+ +++||||||++++|+||. |+|+++++..+ ++|+|+++++++||+
T Consensus 72 ~~~~v~~~a~~l~~~l~~~~-------~p~~--v~~lvaG~D~~~~p~ly~--p~G~~~~~~~~~~~Gsgs~~a~~~Le~ 140 (199)
T 3unf_N 72 EPPLVLAAANVVKNISYKYR-------EDLL--AHLIVAGWDQREGGQVYG--TMGGMLIRQPFTIGGSGSSYIYGYVDA 140 (199)
T ss_dssp SCCCHHHHHHHHHHHHHHTT-------TTCC--CCEEEEEEETTTEEEEEE--CGGGCCEECSEEEEEGGGGGGHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHhcC-------CCce--EEEEEEEEeCCCCcEEEE--ECCCceecCCEEEEccCHHHHHHHHHh
Confidence 99999999999999999765 5887 578999999866899999 99998777655 569999999999999
Q ss_pred hCCCCCCHHHHHHHHHHHHHHHHHhcCcCCCcEEEEEEECCC--eEEeChhHHHHHH
Q psy14210 245 DYRPDLSEEEAYALATSAIYHACRRDIHSGGCVRLYKINGQG--WQQVLSRDVKDIY 299 (312)
Q Consensus 245 ~y~~~ms~eEAi~la~kaL~~a~~rD~~sg~~ieI~iItk~G--~~~l~~~eI~~~l 299 (312)
.|+++||+|||++++++||..+.+||..++++++|++|+++| ++.++++||++++
T Consensus 141 ~~~~~ms~eea~~la~~al~~~~~~d~~sg~~i~v~vi~~~g~~~~~l~~~ei~~~~ 197 (199)
T 3unf_N 141 AYKPGMTPEECRRFTTNAITLAMNRDGSSGGVIYLVTITAAGVDHRVILGDELPKFY 197 (199)
T ss_dssp HCCSSCCHHHHHHHHHHHHHHHHHHCTTCCSCEEEEEECSSCEEEEEECGGGSCCCC
T ss_pred hcCCCCCHHHHHHHHHHHHHHHHHhccccCCCeEEEEEcCCCEEEEEcCcccCcccc
Confidence 999999999999999999999999999999999999999998 5779999987654
No 40
>1ryp_J 20S proteasome; multicatalytic proteinase, protein degradation, antigen processing, hydrolase, protease; 1.90A {Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 1jd2_I* 1g65_I 1vsy_J 2f16_I* 2fak_I* 2fny_I* 2gpl_I* 3d29_I* 3dy3_I* 3dy4_I* 3e47_I* 3gpj_I* 3gpt_I* 3gpw_I* 3hye_I* 3l5q_N 3mg0_I* 3mg4_I* 3oeu_I* 3oev_I* ...
Probab=100.00 E-value=6e-42 Score=304.17 Aligned_cols=190 Identities=19% Similarity=0.244 Sum_probs=178.0
Q ss_pred cccCceEEEEEcCCeEEEEEcCCccCCcccccccccccccccCCCcccccCccccCCcccCCCccccccccccccccccC
Q psy14210 2 FITGTTTLGFRYPEGIILATDSRATANDLIVSQKLNKFCQSSLGDSCELLHPVYTGGERCGQSYSQRSHCVAETQQDHFL 81 (312)
Q Consensus 2 ~~~g~t~~~~~~~~gv~~~~d~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (312)
..+|||+|||+++||||||+|+|+++|.++.+++++|
T Consensus 5 ~~~Gtt~vgi~~~dgVvlaaD~r~~~g~~~~~~~~~K------------------------------------------- 41 (204)
T 1ryp_J 5 SINGGIVVAMTGKDCVAIACDLRLGSQSLGVSNKFEK------------------------------------------- 41 (204)
T ss_dssp GSSCCEEEEEECSSEEEEEEECCEEETTEEEESCCCC-------------------------------------------
T ss_pred CCCCCeEEEEEeCCEEEEEEcCCcccCCEEeeCCcce-------------------------------------------
Confidence 4689999999999999999999999999988888888
Q ss_pred CCCCCCCccccccCCccccccccccCCccccCCCCCCCCCCCCcceEEEecCeEEEEEeCChhHHHHHHHHHHHHhhhhh
Q psy14210 82 SPPLSQSSQHIISGDSCELLHPVYTGGERCGPFSQSSTVPHNTSFQVIPVSSSILCTLAGNAADCVYWLHSLAKECKGYE 161 (312)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~dgVv~~~~~~~~~~~~~~~~KI~~I~d~i~~a~sG~~aD~q~l~~~lr~~~~~~~ 161 (312)
|++|+ |++|+++|..+|++.+.++++.+++.|+
T Consensus 42 ----------------------------------------------i~~i~-~i~~~~aG~~aD~~~l~~~~~~~~~~~~ 74 (204)
T 1ryp_J 42 ----------------------------------------------IFHYG-HVFLGITGLATDVTTLNEMFRYKTNLYK 74 (204)
T ss_dssp ----------------------------------------------EEEET-TEEEEEEECHHHHHHHHHHHHHHHHHHH
T ss_pred ----------------------------------------------EEEeC-CEEEEeeEcHHHHHHHHHHHHHHHHHHh
Confidence 99999 9999999999999999999999999999
Q ss_pred hhcCCccCHHHHHHHHHHHHHHhccCCCCCCCCCCcccceeeeEEec-CCCCeEEEEcCCceEEecC-eeeEccChHHHH
Q psy14210 162 CKYRTGMTIRHAANLLVNMVRKYRTGNHSSKIPNGLSFGTLMAAYDE-ILGPQLYMLDNTGLLIEGT-KFCVGSGAEYAQ 239 (312)
Q Consensus 162 ~~~g~~i~v~~la~~ls~~l~~~~~~~~~~~rP~gls~~~IIaG~D~-~~gp~Ly~iDpsGs~~e~~-~~AiGsGs~~a~ 239 (312)
++++++++++.+|+++++++|.++. .||+ +++||||||+ +++|+||.+||+|++.++. +.++|+|+.+++
T Consensus 75 ~~~~~~~~v~~la~~l~~~~y~~~~------~P~~--v~~lvaG~D~~~~gp~Ly~idp~G~~~~~~~~~aiG~gs~~a~ 146 (204)
T 1ryp_J 75 LKEERAIEPETFTQLVSSSLYERRF------GPYF--VGPVVAGINSKSGKPFIAGFDLIGCIDEAKDFIVSGTASDQLF 146 (204)
T ss_dssp HHHSSCCCHHHHHHHHHHHHHTTTT------SCCC--EEEEEEEECTTTCCEEEEEECTTCCEECCSSEEEEETTHHHHH
T ss_pred hccCCCCCHHHHHHHHHHHHHHhcC------CCce--EEEEEEEEeCCCCceEEEEECCCCCccccCceeEeccCHHHHH
Confidence 9999999999999999999966543 3988 5789999996 4789999999999998775 699999999999
Q ss_pred HHHHhhCCCCCCHHHHHHHHHHHHHHHHHhcCcCCCcEEEEEEECCCeEE
Q psy14210 240 AILDTDYRPDLSEEEAYALATSAIYHACRRDIHSGGCVRLYKINGQGWQQ 289 (312)
Q Consensus 240 ~~Le~~y~~~ms~eEAi~la~kaL~~a~~rD~~sg~~ieI~iItk~G~~~ 289 (312)
++||+.|+++||+|||++++++||..+.++|..++++++|++|+++|++.
T Consensus 147 ~~Le~~~~~~~s~eea~~l~~~al~~~~~~d~~s~~~i~v~vi~~~g~~~ 196 (204)
T 1ryp_J 147 GMCESLYEPNLEPEDLFETISQALLNAADRDALSGWGAVVYIIKKDEVVK 196 (204)
T ss_dssp HHHHHHCCSSCCHHHHHHHHHHHHHHHHTTBTTSCSCEEEEEEESSCEEE
T ss_pred HHHhhhcCCCcCHHHHHHHHHHHHHHHHHhCcccCCcEEEEEEcCCCEEE
Confidence 99999999999999999999999999999999999999999999999764
No 41
>3nzj_H Proteasome component PUP1; ubiquitin, protein degradation, N-terminal nucleophilic HYDR 19S regulatory particle; HET: TY5 TRO MES; 2.40A {Saccharomyces cerevisiae} PDB: 3nzw_H* 3nzx_H* 4b4t_2
Probab=100.00 E-value=3.7e-42 Score=317.40 Aligned_cols=193 Identities=25% Similarity=0.338 Sum_probs=179.6
Q ss_pred cccCceEEEEEcCCeEEEEEcCCccCCcccccccccccccccCCCcccccCccccCCcccCCCccccccccccccccccC
Q psy14210 2 FITGTTTLGFRYPEGIILATDSRATANDLIVSQKLNKFCQSSLGDSCELLHPVYTGGERCGQSYSQRSHCVAETQQDHFL 81 (312)
Q Consensus 2 ~~~g~t~~~~~~~~gv~~~~d~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (312)
+.+|||+|||+++||||||+|+|+++|.++.+++++|
T Consensus 26 v~~GtTivgi~~kdGVVlAaD~r~t~g~li~~~~~~K------------------------------------------- 62 (261)
T 3nzj_H 26 TSTGTTIVGVKFNNGVVIAADTRSTQGPIVADKNCAK------------------------------------------- 62 (261)
T ss_dssp ----CCEEEEEETTEEEEEEECCEEETTEEEETTCCC-------------------------------------------
T ss_pred cccCceEEEEEECCEEEEEEcCCcccCCeeccCCcce-------------------------------------------
Confidence 4689999999999999999999999999999999999
Q ss_pred CCCCCCCccccccCCccccccccccCCccccCCCCCCCCCCCCcceEEEecCeEEEEEeCChhHHHHHHHHHHHHhhhhh
Q psy14210 82 SPPLSQSSQHIISGDSCELLHPVYTGGERCGPFSQSSTVPHNTSFQVIPVSSSILCTLAGNAADCVYWLHSLAKECKGYE 161 (312)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~dgVv~~~~~~~~~~~~~~~~KI~~I~d~i~~a~sG~~aD~q~l~~~lr~~~~~~~ 161 (312)
|++|++|++|++||+.+|++.+.++++.+++.|+
T Consensus 63 ----------------------------------------------I~~I~d~i~~~~aG~~aD~~~l~~~lr~~~~~~~ 96 (261)
T 3nzj_H 63 ----------------------------------------------LHRISPKIWCAGAGTAADTEAVTQLIGSNIELHS 96 (261)
T ss_dssp ----------------------------------------------EEEEETTEEEEEEESHHHHHHHHHHHHHHHHHHH
T ss_pred ----------------------------------------------EEEEcCCEEEEeccCHHHHHHHHHHHHHHHHHhH
Confidence 9999999999999999999999999999999999
Q ss_pred hhcCCccCHHHHHHHHHHHHHHhccCCCCCCCCCCcccceeeeEEecCCCCeEEEEcCCceEEecCeeeEccChHHHHHH
Q psy14210 162 CKYRTGMTIRHAANLLVNMVRKYRTGNHSSKIPNGLSFGTLMAAYDEILGPQLYMLDNTGLLIEGTKFCVGSGAEYAQAI 241 (312)
Q Consensus 162 ~~~g~~i~v~~la~~ls~~l~~~~~~~~~~~rP~gls~~~IIaG~D~~~gp~Ly~iDpsGs~~e~~~~AiGsGs~~a~~~ 241 (312)
++++++++++.++++++++++.++ +||+ +++||||||+ .||+||++||+|++.++++.|+|+|+.+++++
T Consensus 97 ~~~~~~~~v~~~a~~l~~~l~~~~-------~~~g--v~llvaG~D~-~Gp~Ly~iDp~G~~~~~~~~aiGsgs~~a~~~ 166 (261)
T 3nzj_H 97 LYTSREPRVVSALQMLKQHLFKYQ-------GHIG--AYLIVAGVDP-TGSHLFSIHAHGSTDVGYYLSLGSGSLAAMAV 166 (261)
T ss_dssp HHHTSCCCHHHHHHHHHHHHHHTT-------TCSC--EEEEEEEEET-TEEEEEEECTTSCEEECSEEEESTTHHHHHHH
T ss_pred HhhCCCCCHHHHHHHHHHHHHHhc-------Cccc--EEEEEEEEeC-CCCEEEEECCCccEEecCeEEeccchHHHHHH
Confidence 999999999999999999998753 5777 5789999998 78999999999999999999999999999999
Q ss_pred HHhhCCCCCCHHHHHHHHHHHHHHHHHhcCcCCCcEEEEEEECCC-eEEeChh
Q psy14210 242 LDTDYRPDLSEEEAYALATSAIYHACRRDIHSGGCVRLYKINGQG-WQQVLSR 293 (312)
Q Consensus 242 Le~~y~~~ms~eEAi~la~kaL~~a~~rD~~sg~~ieI~iItk~G-~~~l~~~ 293 (312)
||+.|+++||+|||++++++||..+++||..++++++|++|+++| ++++.+.
T Consensus 167 Le~~~~~~ms~eEA~~la~~al~~a~~rD~~sg~~iev~vI~kdg~~~~~~~~ 219 (261)
T 3nzj_H 167 LESHWKQDLTKEEAIKLASDAIQAGIWNDLGSGSNVDVCVMEIGKDAEYLRNY 219 (261)
T ss_dssp HHHHCCSSCCHHHHHHHHHHHHHHHHHHCTTCCSCEEEEEEETTSCEEEEEEE
T ss_pred HHHHhccCCCHHHHHHHHHHHHHHHHhhCCCCCCcEEEEEEECCCcEEEeccc
Confidence 999999999999999999999999999999999999999999999 6665443
No 42
>3mi0_A Proteasome subunit alpha; enzyme inhibitors, lactones, proteasome endopeptidase comple mycobacterium tuberculosis, hydrolase; HET: SA6; 2.20A {Mycobacterium tuberculosis} SCOP: d.153.1.4 PDB: 3h6f_A 3krd_A* 3h6i_A* 3mka_A 2fhh_A* 2fhg_A 3hfa_D 3hf9_A 3mfe_D
Probab=100.00 E-value=5e-42 Score=314.38 Aligned_cols=169 Identities=14% Similarity=0.180 Sum_probs=151.6
Q ss_pred EEEecCeEEEEEeCChhHHHHHHHHHHHHhhhhhhhcC-CccCHHHHHHHHH-HHHHHhccCCCCCCCCCCcccceeeeE
Q psy14210 128 VIPVSSSILCTLAGNAADCVYWLHSLAKECKGYECKYR-TGMTIRHAANLLV-NMVRKYRTGNHSSKIPNGLSFGTLMAA 205 (312)
Q Consensus 128 I~~I~d~i~~a~sG~~aD~q~l~~~lr~~~~~~~~~~g-~~i~v~~la~~ls-~~l~~~~~~~~~~~rP~gls~~~IIaG 205 (312)
||+|++|++|+++|+.+|++.|.+.++.+++.|++.++ .+++++.++++++ .+.+.|++ ++|||+ +++||||
T Consensus 53 I~~I~d~i~~~~aG~~aD~~~l~~~~~~~~~l~~~~~~~~~i~v~~la~~l~~~l~q~yt~----~~rP~g--v~~liaG 126 (248)
T 3mi0_A 53 ISELYDRVGFAAAGKFNEFDNLRRGGIQFADTRGYAYDRRDVTGRQLANVYAQTLGTIFTE----QAKPYE--VELCVAE 126 (248)
T ss_dssp EEEEETTEEEEEEECHHHHHHHHHHHHHHHHHHHHHSCGGGCCHHHHHHHHHHHHHHHHHH----SSSCCC--EEEEEEE
T ss_pred eEEECCCEEEEEccCHHHHHHHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHHhcc----CCCCce--EEEEEEE
Confidence 99999999999999999999999999999999999999 8999999999999 66777776 579998 4689999
Q ss_pred Eec---CCCCeEEEEcCCceEE-ecCeeeEccChHHHHHHHHhhCCCCCCHHHHHHHHHHHHHHHH-------HhcCcCC
Q psy14210 206 YDE---ILGPQLYMLDNTGLLI-EGTKFCVGSGAEYAQAILDTDYRPDLSEEEAYALATSAIYHAC-------RRDIHSG 274 (312)
Q Consensus 206 ~D~---~~gp~Ly~iDpsGs~~-e~~~~AiGsGs~~a~~~Le~~y~~~ms~eEAi~la~kaL~~a~-------~rD~~sg 274 (312)
||+ .++|+||++||+|++. ++++.|+|+|+.+++++||++|+++||+|||++++++||..++ +++ .++
T Consensus 127 ~D~~~~~~gp~Ly~~Dp~G~~~~e~~~~a~Gsgs~~a~~~Le~~y~~~mt~eeai~la~~aL~~~~~~~~~~~~~~-~~~ 205 (248)
T 3mi0_A 127 VAHYGETKRPELYRITYDGSIADEPHFVVMGGTTEPIANALKESYAENASLTDALRIAVAALRAGSADTSGGDQPT-LGV 205 (248)
T ss_dssp CCCTTCCCCCEEEEECTTSCEEEESSEEEESSCHHHHHHHHHHHCCTTCCHHHHHHHHHHHHHHC-------------CC
T ss_pred EcCCCCCCCCEEEEECCCeEEeecccEEEECccHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHHHhhcccCcccc-cCC
Confidence 997 4789999999999999 5999999999999999999999999999999999999999998 555 578
Q ss_pred CcEEEEEEECCC----eEEeChhHHHHHHHHHh
Q psy14210 275 GCVRLYKINGQG----WQQVLSRDVKDIYNDRK 303 (312)
Q Consensus 275 ~~ieI~iItk~G----~~~l~~~eI~~~l~~~~ 303 (312)
++++|++|+++| +++++++||++++.++.
T Consensus 206 ~~iev~vv~~~g~~~~f~~l~~~ei~~~l~~~~ 238 (248)
T 3mi0_A 206 ASLEVAVLDANRPRRAFRRITGSALQALLVDQE 238 (248)
T ss_dssp TTEEEEEEETTSSSCCEEECCHHHHHHTC----
T ss_pred CcEEEEEEECCCCcccEEECCHHHHHHHHHHcC
Confidence 999999999997 99999999999998874
No 43
>1ryp_I 20S proteasome; multicatalytic proteinase, protein degradation, antigen processing, hydrolase, protease; 1.90A {Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 1g0u_H* 1jd2_H* 1g65_H 1vsy_I 1z7q_I 2f16_H* 2fak_H* 2fny_H* 2gpl_H* 3d29_H* 3dy3_H* 3dy4_H* 3e47_H* 3gpj_H* 3gpt_H* 3gpw_H* 3hye_H* 3l5q_M 3mg0_H* 3mg4_H* ...
Probab=100.00 E-value=7e-42 Score=308.19 Aligned_cols=190 Identities=25% Similarity=0.328 Sum_probs=180.9
Q ss_pred ceEEEEEcCCeEEEEEcCCccCCcccccccccccccccCCCcccccCccccCCcccCCCccccccccccccccccCCCCC
Q psy14210 6 TTTLGFRYPEGIILATDSRATANDLIVSQKLNKFCQSSLGDSCELLHPVYTGGERCGQSYSQRSHCVAETQQDHFLSPPL 85 (312)
Q Consensus 6 ~t~~~~~~~~gv~~~~d~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (312)
||+|||+++||||||+|+|+++|.++.+++++|
T Consensus 1 TT~vgi~~~dgVvlaaD~r~t~g~~~~~~~~~K----------------------------------------------- 33 (222)
T 1ryp_I 1 TTIVGVKFNNGVVIAADTRSTQGPIVADKNCAK----------------------------------------------- 33 (222)
T ss_dssp CCEEEEEETTEEEEEECCCEEETTEEEESSCCC-----------------------------------------------
T ss_pred CeEEEEEECCEEEEEEcCCcccCCeeecCCccc-----------------------------------------------
Confidence 799999999999999999999999999988888
Q ss_pred CCCccccccCCccccccccccCCccccCCCCCCCCCCCCcceEEEecCeEEEEEeCChhHHHHHHHHHHHHhhhhhhhcC
Q psy14210 86 SQSSQHIISGDSCELLHPVYTGGERCGPFSQSSTVPHNTSFQVIPVSSSILCTLAGNAADCVYWLHSLAKECKGYECKYR 165 (312)
Q Consensus 86 ~~~~~~~~~~~~~~~~~~~~~dgVv~~~~~~~~~~~~~~~~KI~~I~d~i~~a~sG~~aD~q~l~~~lr~~~~~~~~~~g 165 (312)
|++|++|++|++||..+|++.+.++++.+++.|+++++
T Consensus 34 ------------------------------------------I~~i~d~i~~~~aG~~aD~~~l~~~~~~~~~~~~~~~~ 71 (222)
T 1ryp_I 34 ------------------------------------------LHRISPKIWCAGAGTAADTEAVTQLIGSNIELHSLYTS 71 (222)
T ss_dssp ------------------------------------------EEEEETTEEEEEEECHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred ------------------------------------------EEEecCCEEEEecccHHHHHHHHHHHHHHHHHHHHHcC
Confidence 99999999999999999999999999999999999999
Q ss_pred CccCHHHHHHHHHHHHHHhccCCCCCCCCCCcccceeeeEEecCCCCeEEEEcCCceEEecCeeeEccChHHHHHHHHhh
Q psy14210 166 TGMTIRHAANLLVNMVRKYRTGNHSSKIPNGLSFGTLMAAYDEILGPQLYMLDNTGLLIEGTKFCVGSGAEYAQAILDTD 245 (312)
Q Consensus 166 ~~i~v~~la~~ls~~l~~~~~~~~~~~rP~gls~~~IIaG~D~~~gp~Ly~iDpsGs~~e~~~~AiGsGs~~a~~~Le~~ 245 (312)
++++++.+++++++++|.++ +||+ +++||||||+ ++|+||.+||+|++.++++.|+|+|+.+++++||+.
T Consensus 72 ~~~~v~~~a~~l~~~l~~~~-------~p~~--v~~lvaG~D~-~gp~Ly~idp~G~~~~~~~~aiGsgs~~a~~~Le~~ 141 (222)
T 1ryp_I 72 REPRVVSALQMLKQHLFKYQ-------GHIG--AYLIVAGVDP-TGSHLFSIHAHGSTDVGYYLSLGSGSLAAMAVLESH 141 (222)
T ss_dssp SCCCHHHHHHHHHHHHHHTT-------TCSC--EEEEEEEEET-TEEEEEEECTTSCEEECSEEEESTTHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHhhcC-------CCCC--eeEEEEEEeC-CCCEEEEECCCCCEEecCEEEECCCHHHHHHHHHhh
Confidence 99999999999999998753 6887 5789999998 789999999999999999999999999999999999
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHHhcCcCCCcEEEEEEECCC-eEEeChhH
Q psy14210 246 YRPDLSEEEAYALATSAIYHACRRDIHSGGCVRLYKINGQG-WQQVLSRD 294 (312)
Q Consensus 246 y~~~ms~eEAi~la~kaL~~a~~rD~~sg~~ieI~iItk~G-~~~l~~~e 294 (312)
|+++||+|||++++++||..+++||..++++++|++|+++| ++++.+.+
T Consensus 142 ~~~~ms~eeA~~la~~al~~~~~~d~~sg~~i~v~vi~~~g~~~~~~~~~ 191 (222)
T 1ryp_I 142 WKQDLTKEEAIKLASDAIQAGIWNDLGSGSNVDVCVMEIGKDAEYLRNYL 191 (222)
T ss_dssp CCSSCCHHHHHHHHHHHHHHHHHHCTTCCSCEEEEEEETTSCEEEEEEEE
T ss_pred CCCCcCHHHHHHHHHHHHHHHHhccccCCCcEEEEEEECCCCEEEEecee
Confidence 99999999999999999999999999899999999999999 98876544
No 44
>1iru_I 20S proteasome; cell cycle, immune response, proteolysis, ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4 PDB: 3unb_H* 3une_H
Probab=100.00 E-value=1.7e-41 Score=308.21 Aligned_cols=191 Identities=28% Similarity=0.356 Sum_probs=181.1
Q ss_pred ceEEEEEcCCeEEEEEcCCccCCcccccccccccccccCCCcccccCccccCCcccCCCccccccccccccccccCCCCC
Q psy14210 6 TTTLGFRYPEGIILATDSRATANDLIVSQKLNKFCQSSLGDSCELLHPVYTGGERCGQSYSQRSHCVAETQQDHFLSPPL 85 (312)
Q Consensus 6 ~t~~~~~~~~gv~~~~d~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (312)
||+|||+++||||||+|+|+++|.++.+++.+|
T Consensus 1 TTivgi~~~dgVVlaaD~r~t~g~~~~~~~~~K----------------------------------------------- 33 (234)
T 1iru_I 1 TTIAGVVYKDGIVLGADTRATEGMVVADKNCSK----------------------------------------------- 33 (234)
T ss_dssp CCEEEEEETTEEEEEECCCEESSSBEEESSCCC-----------------------------------------------
T ss_pred CeEEEEEeCCEEEEEEcCCcccCceeccCcccc-----------------------------------------------
Confidence 799999999999999999999999998888888
Q ss_pred CCCccccccCCccccccccccCCccccCCCCCCCCCCCCcceEEEecCeEEEEEeCChhHHHHHHHHHHHHhhhhhhhcC
Q psy14210 86 SQSSQHIISGDSCELLHPVYTGGERCGPFSQSSTVPHNTSFQVIPVSSSILCTLAGNAADCVYWLHSLAKECKGYECKYR 165 (312)
Q Consensus 86 ~~~~~~~~~~~~~~~~~~~~~dgVv~~~~~~~~~~~~~~~~KI~~I~d~i~~a~sG~~aD~q~l~~~lr~~~~~~~~~~g 165 (312)
||+|++|++|++||..+|++.+.++++.+++.|+++++
T Consensus 34 ------------------------------------------I~~i~~~i~~~~aG~~aD~~~l~~~~~~~~~~~~~~~~ 71 (234)
T 1iru_I 34 ------------------------------------------IHFISPNIYCCGAGTAADTDMTTQLISSNLELHSLSTG 71 (234)
T ss_dssp ------------------------------------------EEEEETTEEEEEEESHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred ------------------------------------------eEEecCCEEEEecCcHHHHHHHHHHHHHHHHHHHHhcC
Confidence 89999999999999999999999999999999999999
Q ss_pred CccCHHHHHHHHHHHHHHhccCCCCCCCCCCcccceeeeEEecCCCCeEEEEcCCceEEecCeeeEccChHHHHHHHHhh
Q psy14210 166 TGMTIRHAANLLVNMVRKYRTGNHSSKIPNGLSFGTLMAAYDEILGPQLYMLDNTGLLIEGTKFCVGSGAEYAQAILDTD 245 (312)
Q Consensus 166 ~~i~v~~la~~ls~~l~~~~~~~~~~~rP~gls~~~IIaG~D~~~gp~Ly~iDpsGs~~e~~~~AiGsGs~~a~~~Le~~ 245 (312)
++++++.+++++++.+|.++ +||+ +++||||||+ ++|+||.+||+|++.++++.|+|+|+.+++++||+.
T Consensus 72 ~~~~v~~la~~l~~~l~~~~-------~~~~--v~llvaG~D~-~gp~Ly~idp~G~~~~~~~~aiGsgs~~a~~~Le~~ 141 (234)
T 1iru_I 72 RLPRVVTANRMLKQMLFRYR-------GYIG--AALVLGGVDV-TGPHLYSIYPHGSTDKLPYVTMGSGSLAAMAVFEDK 141 (234)
T ss_dssp SCCCHHHHHHHHHHHHHHTT-------TCSC--EEEEEEEECS-SCEEEEEECTTSCEEECSEEEESTTHHHHHHHHHHS
T ss_pred CCCCHHHHHHHHHHHHHhcC-------CCCc--eeEEEEEEcC-CCCEEEEECCCCCEEecCEEEECCchHHHHHHHHHh
Confidence 99999999999999999765 4777 6789999998 789999999999999999999999999999999999
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHHhcCcCCCcEEEEEEECCCeEEeChhHH
Q psy14210 246 YRPDLSEEEAYALATSAIYHACRRDIHSGGCVRLYKINGQGWQQVLSRDV 295 (312)
Q Consensus 246 y~~~ms~eEAi~la~kaL~~a~~rD~~sg~~ieI~iItk~G~~~l~~~eI 295 (312)
|+++||+|||++++++||..++++|..++++++|++|+++|++.+.+.++
T Consensus 142 ~~~~ms~eeA~~la~~al~~a~~~d~~sg~~i~v~vi~k~g~~~~~~~~~ 191 (234)
T 1iru_I 142 FRPDMEEEEAKNLVSEAIAAGIFNDLGSGSNIDLCVISKNKLDFLRPYTV 191 (234)
T ss_dssp CCTTCCHHHHHTHHHHHHHHHHHHCTTCCSCEEEEEEETTEEECCSEEEC
T ss_pred ccCCCCHHHHHHHHHHHHHHHHHhcccCCCCEEEEEEECCcEEEEcceec
Confidence 99999999999999999999999999899999999999999987765443
No 45
>1q5q_A Proteasome alpha-type subunit 1; proteasome assembly, Pro-peptide, inter-subunit contacts, RH erythropolis, hydrolase; 2.60A {Rhodococcus erythropolis} SCOP: d.153.1.4 PDB: 2h6j_A 1q5r_A
Probab=100.00 E-value=2.3e-41 Score=311.79 Aligned_cols=169 Identities=15% Similarity=0.215 Sum_probs=152.7
Q ss_pred EEEecCeEEEEEeCChhHHHHHHHHHHHHhhhhhhhcC-CccCHHHHHHHHHH-HHHHhccCCCCCCCCCCcccceeeeE
Q psy14210 128 VIPVSSSILCTLAGNAADCVYWLHSLAKECKGYECKYR-TGMTIRHAANLLVN-MVRKYRTGNHSSKIPNGLSFGTLMAA 205 (312)
Q Consensus 128 I~~I~d~i~~a~sG~~aD~q~l~~~lr~~~~~~~~~~g-~~i~v~~la~~ls~-~l~~~~~~~~~~~rP~gls~~~IIaG 205 (312)
||+|++||+|+++|+.+|++.|+++++.+++.|++.++ .+++++.+|+++++ +.+.|+. +.|||+ +++||||
T Consensus 53 I~~I~d~i~~~~aG~~aD~~~l~~~~~~~~~~~~~~~~~~~i~v~~la~~l~~~l~q~yt~----~~rP~~--v~~lvaG 126 (259)
T 1q5q_A 53 VSELYDRLGFAAVGKYNEFENLRRAGIVHADMRGYSYDRRDVTGRSLANAYAQTLGTIFTE----QPKPYE--VEICVAE 126 (259)
T ss_dssp EEEEETTEEEEEEECHHHHHHHHHHHHHHHHHHHHHSCGGGCCHHHHHHHHHHHHHHHHHH----SSSCCC--EEEEEEE
T ss_pred EEEeCCCEEEEEccCHHHHHHHHHHHHHHHHHHHHHcCCcCCCHHHHHHHHHHHHHHHhcc----CCCCce--EEEEEEE
Confidence 99999999999999999999999999999999999888 49999999999999 5455554 469988 5789999
Q ss_pred Ee--c-CCCCeEEEEcCCceEE-ecCeeeEccChHHHHHHHHhhCCCCCCHHHHHHHHHHHHHHHH-----HhcCcCCCc
Q psy14210 206 YD--E-ILGPQLYMLDNTGLLI-EGTKFCVGSGAEYAQAILDTDYRPDLSEEEAYALATSAIYHAC-----RRDIHSGGC 276 (312)
Q Consensus 206 ~D--~-~~gp~Ly~iDpsGs~~-e~~~~AiGsGs~~a~~~Le~~y~~~ms~eEAi~la~kaL~~a~-----~rD~~sg~~ 276 (312)
|| + ..+|+||++||+|+++ ++++.++|+|+.+++++||+.|+++||+|||++++++||..++ +||. ++++
T Consensus 127 ~D~~~~~~gp~Ly~idp~G~~~~~~~~~aiG~gs~~a~~~Le~~~~~~ms~eea~~la~~al~~~~~~~~~~rd~-sg~~ 205 (259)
T 1q5q_A 127 VGRVGSPKAPQLYRITYDGSIVDEQHFVVMGGTTEPIATAMRESYRADLDLEAAVGIAVNALRQGGAGEGEKRNV-DVAS 205 (259)
T ss_dssp CCCSSCCCCCEEEEEETTSCEEEESSEEEESSSHHHHHHHHHHHCCTTCCHHHHHHHHHHHHTTCC--------C-CSSC
T ss_pred EcccCCCCCCEEEEECCCCceeeCCCEEEECCChHHHHHHHHhhccCCCCHHHHHHHHHHHHHHHhhcccccccC-CCCc
Confidence 99 2 3799999999999999 8899999999999999999999999999999999999999998 8998 8999
Q ss_pred EEEEEEECC----CeEEeChhHHHHHHHHHh
Q psy14210 277 VRLYKINGQ----GWQQVLSRDVKDIYNDRK 303 (312)
Q Consensus 277 ieI~iItk~----G~~~l~~~eI~~~l~~~~ 303 (312)
++|++|+++ ++++++++||++++..+.
T Consensus 206 iev~vi~~~~~~~~~~~l~~~ei~~~~~~~~ 236 (259)
T 1q5q_A 206 LEVAVLDQSRPRRAFRRIAGTALEQLVPAEP 236 (259)
T ss_dssp SEEEEEETTSSSCCEEECCHHHHHTTSCCC-
T ss_pred EEEEEEECCCCcCCeEECCHHHHHHHHHHhh
Confidence 999999998 799999999999987653
No 46
>2z3b_A ATP-dependent protease HSLV; N-terminal nucleophIle hydrolase; 2.50A {Bacillus subtilis} SCOP: d.153.1.4 PDB: 2z3a_A 1yyf_D* 3ty6_A
Probab=100.00 E-value=6.2e-35 Score=254.95 Aligned_cols=170 Identities=19% Similarity=0.224 Sum_probs=149.7
Q ss_pred ccCceEEEEEcCCeEEEEEcCCccCCcc-cccccccccccccCCCcccccCccccCCcccCCCccccccccccccccccC
Q psy14210 3 ITGTTTLGFRYPEGIILATDSRATANDL-IVSQKLNKFCQSSLGDSCELLHPVYTGGERCGQSYSQRSHCVAETQQDHFL 81 (312)
Q Consensus 3 ~~g~t~~~~~~~~gv~~~~d~~~~~~~~-~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (312)
.+|||+|||+++||||||+|+|+|+|.+ +.+++++|
T Consensus 3 ~~GtTivgi~~~dgVvlaaD~r~t~g~~~i~~~~~~K------------------------------------------- 39 (180)
T 2z3b_A 3 FHATTIFAVQHKGRSAMSGDGQVTFGQAVVMKHTARK------------------------------------------- 39 (180)
T ss_dssp BCCCCEEEEEETTEEEEEECCCEEETTTEEEESCCCC-------------------------------------------
T ss_pred CCCeEEEEEEECCEEEEEECCCccCCCceEecCCCCc-------------------------------------------
Confidence 5799999999999999999999999999 99999999
Q ss_pred CCCCCCCccccccCCccccccccccCCccccCCCCCCCCCCCCcceEEEe-cCeEEEEEeCChhHHHHHHHHHHHHhhhh
Q psy14210 82 SPPLSQSSQHIISGDSCELLHPVYTGGERCGPFSQSSTVPHNTSFQVIPV-SSSILCTLAGNAADCVYWLHSLAKECKGY 160 (312)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~dgVv~~~~~~~~~~~~~~~~KI~~I-~d~i~~a~sG~~aD~q~l~~~lr~~~~~~ 160 (312)
|++| ++|++|+++|..+|++.|.++++.+++.|
T Consensus 40 ----------------------------------------------I~~i~~~~i~~~~aG~~aD~~~l~~~~~~~~~~y 73 (180)
T 2z3b_A 40 ----------------------------------------------VRKLFNGKVLAGFAGSVADAFTLFEKFEAKLEEY 73 (180)
T ss_dssp ----------------------------------------------EEEETTTTEEEEECSCHHHHHHHHHHHHHHHHHT
T ss_pred ----------------------------------------------EEEECCCCEEEEeCchHHHHHHHHHHHHHHHHHh
Confidence 9999 99999999999999999999999999999
Q ss_pred hhhcCCccCHHHHHHHHHHHHHHhccCCCCCCCCCCcccceeeeEEecCCCCeEEEEcCCceEEec--CeeeEccChHHH
Q psy14210 161 ECKYRTGMTIRHAANLLVNMVRKYRTGNHSSKIPNGLSFGTLMAAYDEILGPQLYMLDNTGLLIEG--TKFCVGSGAEYA 238 (312)
Q Consensus 161 ~~~~g~~i~v~~la~~ls~~l~~~~~~~~~~~rP~gls~~~IIaG~D~~~gp~Ly~iDpsGs~~e~--~~~AiGsGs~~a 238 (312)
+ + ..++.+ ..+++.++ + +...|||+ +++||| | +|+||.+||+|+++++ ++.|+|+|+.++
T Consensus 74 ~---g--~~~~~~-~~l~~~~~---~--~~~~rp~~--~~~lva--d---~p~ly~~d~~G~~~~~~~~~~a~Gsgs~~a 135 (180)
T 2z3b_A 74 N---G--NLKRAA-VELAKEWR---S--DKVLRKLE--AMLIVM--N---QDTLLLVSGTGEVIEPDDGILAIGSGGNYA 135 (180)
T ss_dssp T---T--CHHHHH-HHHHHHHH---H--CTTGGGCC--CCEEEE--C---SSCEEEECTTCCEECCSSSEEEESTTHHHH
T ss_pred c---C--ChHHHH-HHHHHHHH---h--hhCcCcce--EEEEEE--c---CCeEEEECCCCcEEEeCCCEEEECCCHHHH
Confidence 8 2 223333 33454444 3 44578988 567888 4 6999999999999985 899999999999
Q ss_pred HHHHHhhCCC---CCCHHHHHHHHHHHHHHHHHhcCcCCCcEEEEEE
Q psy14210 239 QAILDTDYRP---DLSEEEAYALATSAIYHACRRDIHSGGCVRLYKI 282 (312)
Q Consensus 239 ~~~Le~~y~~---~ms~eEAi~la~kaL~~a~~rD~~sg~~ieI~iI 282 (312)
+++||+.|++ +||.|| ++++||+.+.+||..++++++|.+|
T Consensus 136 ~~~le~~~~~~~~~mt~ee---l~~~al~~a~~rd~~sg~~i~v~~i 179 (180)
T 2z3b_A 136 LAAGRALKKHAGESMSASE---IARAALETAGEICVYTNDQIILEEL 179 (180)
T ss_dssp HHHHHHHHHHHGGGCCHHH---HHHHHHHHHHHHCTTCCSCCEEEEE
T ss_pred HHHHHHhhhccCCCCCHHH---HHHHHHHHHHHhcCccCCeEEEEEE
Confidence 9999999998 999999 4789999999999999999999988
No 47
>1g3k_A ATP-dependent protease HSLV; hydrolase; 1.90A {Haemophilus influenzae} SCOP: d.153.1.4 PDB: 1g3i_G 1jjw_A 1kyi_G* 1ofh_G* 1ofi_G* 1e94_A* 1g4a_B* 1g4b_M 1hqy_A* 1ht1_C* 1ht2_A* 1ned_A
Probab=100.00 E-value=2.4e-34 Score=249.59 Aligned_cols=168 Identities=15% Similarity=0.215 Sum_probs=151.2
Q ss_pred ceEEEEEcCCeEEEEEcCCccCCcccccccccccccccCCCcccccCccccCCcccCCCccccccccccccccccCCCCC
Q psy14210 6 TTTLGFRYPEGIILATDSRATANDLIVSQKLNKFCQSSLGDSCELLHPVYTGGERCGQSYSQRSHCVAETQQDHFLSPPL 85 (312)
Q Consensus 6 ~t~~~~~~~~gv~~~~d~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (312)
||+|||+++||||||+|+|+|+|.++.+++++|
T Consensus 1 tT~vgi~~~dgVvlaaD~r~t~g~~i~~~~~~K----------------------------------------------- 33 (174)
T 1g3k_A 1 TTIVSVRRNGQVVVGGDGQVSLGNTVMKGNARK----------------------------------------------- 33 (174)
T ss_dssp CCEEEEEETTEEEEEECCCEEETTEEEESCCCC-----------------------------------------------
T ss_pred CeEEEEEECCEEEEEECCCCccCCeeEeCCCCc-----------------------------------------------
Confidence 799999999999999999999999999999999
Q ss_pred CCCccccccCCccccccccccCCccccCCCCCCCCCCCCcceEEEe-cCeEEEEEeCChhHHHHHHHHHHHHhhhhhhhc
Q psy14210 86 SQSSQHIISGDSCELLHPVYTGGERCGPFSQSSTVPHNTSFQVIPV-SSSILCTLAGNAADCVYWLHSLAKECKGYECKY 164 (312)
Q Consensus 86 ~~~~~~~~~~~~~~~~~~~~~dgVv~~~~~~~~~~~~~~~~KI~~I-~d~i~~a~sG~~aD~q~l~~~lr~~~~~~~~~~ 164 (312)
||+| ++|++++++|..+|++.|.++++.+++.|++
T Consensus 34 ------------------------------------------i~~i~~~~i~~~~aG~~aD~~~l~~~~~~~~~~~~~-- 69 (174)
T 1g3k_A 34 ------------------------------------------VRRLYNGKVLAGFAGGTADAFTLFELFERKLEMHQG-- 69 (174)
T ss_dssp ------------------------------------------EEEETTTTEEEEEESCHHHHHHHHHHHHHHHHHTTT--
T ss_pred ------------------------------------------EEEECCCCEEEEeCccHHHHHHHHHHHHHHHHHhcC--
Confidence 9999 9999999999999999999999999999986
Q ss_pred CCccCHHHHHHHHHHHHHHhccCCCCCCCCCCcccceeeeEEecCCCCeEEEEcCCceEEecC---eeeEccChHHHHHH
Q psy14210 165 RTGMTIRHAANLLVNMVRKYRTGNHSSKIPNGLSFGTLMAAYDEILGPQLYMLDNTGLLIEGT---KFCVGSGAEYAQAI 241 (312)
Q Consensus 165 g~~i~v~~la~~ls~~l~~~~~~~~~~~rP~gls~~~IIaG~D~~~gp~Ly~iDpsGs~~e~~---~~AiGsGs~~a~~~ 241 (312)
++...+..+++.++.++. .||++ ++++|+| +|+||++||+|++.+++ +.|+|+|+++++++
T Consensus 70 ----~~~~~~~~l~~~~~~~~~-----~r~~~----~~l~g~d---~p~Ly~~d~~G~~~~~~~~~~~a~Gsgs~~a~~~ 133 (174)
T 1g3k_A 70 ----HLLKSAVELAKDWRTDRA-----LRKLE----AMLIVAD---EKESLIITGIGDVVQPEEDQILAIGSGGNYALSA 133 (174)
T ss_dssp ----CHHHHHHHHHHHHHHSTT-----GGGCC----CEEEEEC---SSCEEEEETTTEEECCCTTCEEEESTTHHHHHHH
T ss_pred ----cHHHHHHHHHHHHHhccC-----cCcce----EEEEEEC---CCEEEEEcCCCcEEecCCCcEEEEcccHHHHHHH
Confidence 345555666666665443 56743 5888997 69999999999999988 99999999999999
Q ss_pred HHhhCC-CCCCHHHHHHHHHHHHHHHHHhcCcCCCcEEEEEEE
Q psy14210 242 LDTDYR-PDLSEEEAYALATSAIYHACRRDIHSGGCVRLYKIN 283 (312)
Q Consensus 242 Le~~y~-~~ms~eEAi~la~kaL~~a~~rD~~sg~~ieI~iIt 283 (312)
||+.|+ ++||.+ +++++||+.+.+||..++++++|++|+
T Consensus 134 le~~~~~~~mt~~---~l~~~al~~a~~rd~~sg~~i~v~~i~ 173 (174)
T 1g3k_A 134 ARALVENTELSAH---EIVEKSLRIAGDICVFTNTNFTIEELP 173 (174)
T ss_dssp HHHHHHHCCCCHH---HHHHHHHHHHHHHCTTCCSCCEEEEEC
T ss_pred HHHhcccCCCCHH---HHHHHHHHHHHHhccccCCceEEEEec
Confidence 999999 999955 799999999999999999999999985
No 48
>1m4y_A ATP-dependent protease HSLV; N-terminal catalytic threonine residue, hydrolase; 2.10A {Thermotoga maritima} SCOP: d.153.1.4
Probab=100.00 E-value=3.7e-34 Score=247.62 Aligned_cols=167 Identities=21% Similarity=0.257 Sum_probs=147.3
Q ss_pred ceEEEEEcCCeEEEEEcCCccCCcccccccccccccccCCCcccccCccccCCcccCCCccccccccccccccccCCCCC
Q psy14210 6 TTTLGFRYPEGIILATDSRATANDLIVSQKLNKFCQSSLGDSCELLHPVYTGGERCGQSYSQRSHCVAETQQDHFLSPPL 85 (312)
Q Consensus 6 ~t~~~~~~~~gv~~~~d~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (312)
||+|||+++||||||+|+|+++|.++.+++.+|
T Consensus 1 tt~vgi~~~dgVvlaaD~r~~~g~~i~~~~~~K----------------------------------------------- 33 (171)
T 1m4y_A 1 TTILVVRRNGQTVMGGDGQVTFGSTVLKGNARK----------------------------------------------- 33 (171)
T ss_dssp CCEEEEEETTEEEEEECCCEEETTEEEESCCCC-----------------------------------------------
T ss_pred CeEEEEEECCEEEEEECCCcccCCEEEeCCcce-----------------------------------------------
Confidence 799999999999999999999999999999889
Q ss_pred CCCccccccCCccccccccccCCccccCCCCCCCCCCCCcceEEEe-cCeEEEEEeCChhHHHHHHHHHHHHhhhhhhhc
Q psy14210 86 SQSSQHIISGDSCELLHPVYTGGERCGPFSQSSTVPHNTSFQVIPV-SSSILCTLAGNAADCVYWLHSLAKECKGYECKY 164 (312)
Q Consensus 86 ~~~~~~~~~~~~~~~~~~~~~dgVv~~~~~~~~~~~~~~~~KI~~I-~d~i~~a~sG~~aD~q~l~~~lr~~~~~~~~~~ 164 (312)
||+| ++|++++++|..+|++.+.++++.+++.|+++
T Consensus 34 ------------------------------------------i~~i~~~~i~~~~aG~~aD~~~l~~~~~~~~~~~~~~- 70 (171)
T 1m4y_A 34 ------------------------------------------VRKLGEGKVLAGFAGSVADAMTLFDRFEAKLREWGGN- 70 (171)
T ss_dssp ------------------------------------------EEEETTTTEEEEEESCHHHHHHHHHHHHHHHHHTTTC-
T ss_pred ------------------------------------------EEEeCCCCEEEEeCccHHHHHHHHHHHHHHHHHhccc-
Confidence 9999 99999999999999999999999999999865
Q ss_pred CCccCHHHHHHHHHHHHHHhccCCCCCCCCCCcccceeeeEEecCCCCeEEEEcCCceEEecC--eeeEccChHHHHHHH
Q psy14210 165 RTGMTIRHAANLLVNMVRKYRTGNHSSKIPNGLSFGTLMAAYDEILGPQLYMLDNTGLLIEGT--KFCVGSGAEYAQAIL 242 (312)
Q Consensus 165 g~~i~v~~la~~ls~~l~~~~~~~~~~~rP~gls~~~IIaG~D~~~gp~Ly~iDpsGs~~e~~--~~AiGsGs~~a~~~L 242 (312)
.++.+++.. +.++.++ ..|||++ ++|++ | +|+||++||+|++.+++ +.|+|+|+++++++|
T Consensus 71 ----~~~~~~~l~-~~~~~~~-----~~~~~~~--~~lv~--D---~p~Ly~~d~~G~~~~~~~~~~a~Gsgs~~a~~~l 133 (171)
T 1m4y_A 71 ----LTKAAVELA-KDWRTDR-----VLRRLEA--LLLVA--D---KENIFIISGNGEVIQPDDDAAAIGSGGPYALAAA 133 (171)
T ss_dssp ----HHHHHHHHH-HHHHHCT-----TGGGCCC--EEEEE--C---SSCEEEECTTSCEECCSSSEEEESTTHHHHHHHH
T ss_pred ----HHHHHHHHH-HHHHHhC-----CCCceEE--EEEEE--c---CCEEEEECCCCCEEecCCCEEEECCcHHHHHHHH
Confidence 255555543 3444433 3578884 56666 5 79999999999999988 999999999999999
Q ss_pred HhhCC-CCCCHHHHHHHHHHHHHHHHHhcCcCCCcEEEEEE
Q psy14210 243 DTDYR-PDLSEEEAYALATSAIYHACRRDIHSGGCVRLYKI 282 (312)
Q Consensus 243 e~~y~-~~ms~eEAi~la~kaL~~a~~rD~~sg~~ieI~iI 282 (312)
|+.|+ ++||. ++++++||+.+.+||..++++++|.++
T Consensus 134 e~~~~~~~ms~---~~l~~~al~~a~~rd~~sg~~i~v~~~ 171 (171)
T 1m4y_A 134 KALLRNTDLSA---REIVEKAMTIAGEICIYTNQNIVIEEV 171 (171)
T ss_dssp HHHHHHCCCCH---HHHHHHHHHHHHHHCTTCCSCCEEEEC
T ss_pred HHhcccCCCCH---HHHHHHHHHHHHHhCcccCCeEEEEEC
Confidence 99999 99996 678999999999999999999999764
No 49
>1ryp_D 20S proteasome; multicatalytic proteinase, protein degradation, antigen processing, hydrolase, protease; 1.90A {Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 1jd2_C* 1g65_C 2f16_C* 2fak_C* 2fny_C* 2gpl_C* 3d29_C* 3dy3_C* 3dy4_C* 3e47_C* 3gpj_C* 3gpt_C* 3gpw_C* 3hye_C* 3mg0_C* 3mg4_C* 3oeu_C* 3oev_C* 3okj_C* 3shj_C* ...
Probab=83.78 E-value=0.18 Score=44.67 Aligned_cols=36 Identities=8% Similarity=-0.137 Sum_probs=29.7
Q ss_pred ccccccccccccccCCCCCCCCccccccCCccccccccccCCccccCCCCCCCCC
Q psy14210 67 QRSHCVAETQQDHFLSPPLSQSSQHIISGDSCELLHPVYTGGERCGPFSQSSTVP 121 (312)
Q Consensus 67 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dgVv~~~~~~~~~~~ 121 (312)
|++||..+-.+.. .++|++++||||+++|++.+.-+
T Consensus 17 QvEya~~av~~Gt-------------------t~vgi~~~dgVvlaaD~r~~~g~ 52 (241)
T 1ryp_D 17 QVEYALEAVKRGT-------------------CAVGVKGKNCVVLGCERRSTLKL 52 (241)
T ss_dssp HHHHHHHHHTTSC-------------------CEEEEECSSCEEEEEECCCSSCC
T ss_pred HHHHHHHHHHcCC-------------------CEEEEEeCCEEEEEEeeccCccC
Confidence 8888877766655 78999999999999999876643
No 50
>1ryp_E 20S proteasome; multicatalytic proteinase, protein degradation, antigen processing, hydrolase, protease; 1.90A {Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 1jd2_D* 1g65_D 2f16_D* 2fak_D* 2fny_D* 2gpl_D* 3d29_D* 3dy3_D* 3dy4_D* 3e47_D* 3gpj_D* 3gpt_D* 3gpw_D* 3hye_D* 3mg0_D* 3mg4_D* 3okj_D* 3shj_D* 3tdd_D* 2z5c_C ...
Probab=83.25 E-value=0.2 Score=44.35 Aligned_cols=36 Identities=8% Similarity=-0.011 Sum_probs=29.7
Q ss_pred ccccccccccccccCCCCCCCCccccccCCccccccccccCCccccCCCCCCCCC
Q psy14210 67 QRSHCVAETQQDHFLSPPLSQSSQHIISGDSCELLHPVYTGGERCGPFSQSSTVP 121 (312)
Q Consensus 67 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dgVv~~~~~~~~~~~ 121 (312)
|++||..+-.++. .++|++++||||+++|++.+.-+
T Consensus 15 QvEyA~~av~~Gt-------------------t~vgi~~~dgVvlaaD~r~~~g~ 50 (242)
T 1ryp_E 15 QVEYSLEAIKLGS-------------------TAIGIATKEGVVLGVEKRATSPL 50 (242)
T ss_dssp HHHHHHHHHTTSC-------------------CEEEEECSSCEEEEEECCCSSTT
T ss_pred HHHhHHHHHHcCC-------------------CEEEEEECCEEEEEEeecCCCcC
Confidence 8888877766655 78999999999999999876643
No 51
>1ryp_F 20S proteasome; multicatalytic proteinase, protein degradation, antigen processing, hydrolase, protease; 1.90A {Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 1jd2_E* 1g65_E 2f16_E* 2fak_E* 2fny_E* 2gpl_E* 3d29_E* 3dy3_E* 3dy4_E* 3e47_E* 3gpj_E* 3gpt_E* 3gpw_E* 3hye_E* 3mg0_E* 3mg4_E* 3oeu_E* 3oev_E* 3okj_E* 3shj_E* ...
Probab=82.62 E-value=0.23 Score=43.75 Aligned_cols=36 Identities=6% Similarity=-0.105 Sum_probs=30.2
Q ss_pred ccccccccccccccCCCCCCCCccccccCCccccccccccCCccccCCCCCCCCC
Q psy14210 67 QRSHCVAETQQDHFLSPPLSQSSQHIISGDSCELLHPVYTGGERCGPFSQSSTVP 121 (312)
Q Consensus 67 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dgVv~~~~~~~~~~~ 121 (312)
|++||..+-.++. .++|++++||||+++|++.+..+
T Consensus 20 QvEyA~~av~~Gt-------------------t~vgi~~~dgVvlaaD~r~~~~l 55 (233)
T 1ryp_F 20 QVEYALEAIKQGS-------------------VTVGLRSNTHAVLVALKRNADEL 55 (233)
T ss_dssp HHHHHHHHHHTSC-------------------CEEEEECSSEEEEEEECCCSSTT
T ss_pred HHHHHHHHHHcCC-------------------CEEEEEcCCEEEEEEEecccccc
Confidence 8888877776665 68999999999999999877654
No 52
>1ryp_C 20S proteasome; multicatalytic proteinase, protein degradation, antigen processing, hydrolase, protease; 1.90A {Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 1jd2_B* 1g65_B 2f16_B* 2fak_B* 2fny_B* 2gpl_B* 3d29_B* 3dy3_B* 3dy4_B* 3e47_B* 3gpj_B* 3gpt_B* 3gpw_B* 3hye_B* 3mg0_B* 3mg4_B* 3okj_B* 3shj_B* 3tdd_B* 3nzj_B* ...
Probab=82.09 E-value=0.19 Score=44.59 Aligned_cols=35 Identities=6% Similarity=-0.003 Sum_probs=29.0
Q ss_pred ccccccccccccccCCCCCCCCccccccCCccccccccccCCccccCCCCCCCC
Q psy14210 67 QRSHCVAETQQDHFLSPPLSQSSQHIISGDSCELLHPVYTGGERCGPFSQSSTV 120 (312)
Q Consensus 67 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dgVv~~~~~~~~~~ 120 (312)
|++||..+-.++. .++|++++||||+++|++.+.-
T Consensus 20 QvEyA~~av~~Gt-------------------t~vgi~~~dgVvlaaD~r~~~g 54 (244)
T 1ryp_C 20 QVEYALESISHAG-------------------TAIGIMASDGIVLAAERKVTST 54 (244)
T ss_dssp HHHHHHHHHTTSC-------------------CEEEEEETTEEEEEEECSSCCS
T ss_pred HHHhHHHHHhcCC-------------------cEEEEEeCCEEEEEEeeccCCc
Confidence 8888877766555 7899999999999999987654
No 53
>1iru_C 20S proteasome; cell cycle, immune response, proteolysis, ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4 PDB: 3unb_B* 3une_B 3unf_B* 3unh_B
Probab=81.60 E-value=0.23 Score=44.60 Aligned_cols=36 Identities=8% Similarity=-0.078 Sum_probs=28.7
Q ss_pred ccccccccccccccCCCCCCCCccccccCCccccccccccCCccccCCCCCCCCC
Q psy14210 67 QRSHCVAETQQDHFLSPPLSQSSQHIISGDSCELLHPVYTGGERCGPFSQSSTVP 121 (312)
Q Consensus 67 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dgVv~~~~~~~~~~~ 121 (312)
|++||..+-.++. .++|++++||||+++|++.+.-+
T Consensus 20 QvEYA~~av~~Gt-------------------t~vgi~~~dgVVlaaD~r~~~g~ 55 (261)
T 1iru_C 20 QVEYAMEAIGHAG-------------------TCLGILANDGVLLAAERRNIHKL 55 (261)
T ss_dssp HHHHHHHHHTTSC-------------------CEEEEBCSSEEEEEECCCCCCTT
T ss_pred HHHhHHHHHhcCC-------------------cEEEEEeCCEEEEEEecccCCcc
Confidence 7788776665544 78999999999999999876643
No 54
>1ryp_A 20S proteasome; multicatalytic proteinase, protein degradation, antigen processing, hydrolase, protease; 1.90A {Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 1jd2_G* 1g65_G 1vsy_A 2f16_G* 2fak_G* 2fny_G* 2gpl_G* 3d29_G* 3dy3_G* 3dy4_G* 3e47_G* 3gpj_G* 3gpt_G* 3gpw_G* 3hye_G* 3l5q_A 3mg0_G* 3mg4_G* 3oeu_G* 3oev_G* ...
Probab=81.48 E-value=0.29 Score=43.38 Aligned_cols=34 Identities=12% Similarity=-0.101 Sum_probs=28.7
Q ss_pred ccccccccccc-cccCCCCCCCCccccccCCccccccccccCCccccCCCCCCC
Q psy14210 67 QRSHCVAETQQ-DHFLSPPLSQSSQHIISGDSCELLHPVYTGGERCGPFSQSST 119 (312)
Q Consensus 67 ~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dgVv~~~~~~~~~ 119 (312)
|++||..+-.+ +. .++|++++||||+++|++.+.
T Consensus 18 QvEYA~~av~~~Gt-------------------t~vgi~~~dgVvlaad~r~~~ 52 (243)
T 1ryp_A 18 QVEYAFKATNQTNI-------------------NSLAVRGKDCTVVISQKKVPD 52 (243)
T ss_dssp HHHHHHHHTTTTCC-------------------CEEEEECSSEEEEEEECCCCC
T ss_pred HHHHHHHHHhcCCC-------------------cEEEEEeCCEEEEEEEecCCc
Confidence 88888877776 55 689999999999999988664
No 55
>1yar_A Proteasome alpha subunit; proteasome 20S, PA26 proteasome activator 11S, hydrolase-HYD activator complex; 1.90A {Thermoplasma acidophilum} SCOP: d.153.1.4 PDB: 1ya7_A 1pma_A 3c91_A 3c92_A 3ipm_A 2ku1_A 2ku2_A 1yau_A 3jrm_A 3jse_A 3jtl_A
Probab=81.36 E-value=0.26 Score=43.28 Aligned_cols=35 Identities=9% Similarity=-0.038 Sum_probs=28.7
Q ss_pred ccccccccccccccCCCCCCCCccccccCCccccccccccCCccccCCCCCCCC
Q psy14210 67 QRSHCVAETQQDHFLSPPLSQSSQHIISGDSCELLHPVYTGGERCGPFSQSSTV 120 (312)
Q Consensus 67 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dgVv~~~~~~~~~~ 120 (312)
|++|+..+-.++. .++|++++||||+++|++.+..
T Consensus 23 QvEya~~av~~Gt-------------------t~vgi~~~dgVvlaaD~r~~~~ 57 (233)
T 1yar_A 23 QVEYAREAVKKGS-------------------TALGMKFANGVLLISDKKVRSR 57 (233)
T ss_dssp HHHHHHHHHTTSC-------------------CEEEEEETTEEEEEECCCCCCT
T ss_pred HHHhHHHHHhcCC-------------------cEEEEEECCEEEEEEeccCCcc
Confidence 7888877666555 7899999999999999987653
No 56
>1iru_B 20S proteasome; cell cycle, immune response, proteolysis, ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4 PDB: 3unb_A* 3une_A 3unf_A* 3unh_A
Probab=81.30 E-value=0.34 Score=42.52 Aligned_cols=34 Identities=9% Similarity=-0.049 Sum_probs=28.8
Q ss_pred ccccccccccccccCCCCCCCCccccccCCccccccccccCCccccCCCCCCC
Q psy14210 67 QRSHCVAETQQDHFLSPPLSQSSQHIISGDSCELLHPVYTGGERCGPFSQSST 119 (312)
Q Consensus 67 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dgVv~~~~~~~~~ 119 (312)
|++|+..+-.++. .++|++++||||+++|++.+.
T Consensus 20 QvEya~~av~~Gt-------------------t~vgi~~~dgVvlaaD~r~~~ 53 (233)
T 1iru_B 20 QIEYALAAVAGGA-------------------PSVGIKAANGVVLATEKKQKS 53 (233)
T ss_dssp HHHHHHHHHHTSC-------------------CEEEEECSSCEEEEEECCCCC
T ss_pred hhHhHHHHHHcCC-------------------cEEEEEeCCEEEEEEEecCCc
Confidence 8888887776665 789999999999999988654
No 57
>1iru_E 20S proteasome; cell cycle, immune response, proteolysis, ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4 PDB: 3unb_D* 3une_D 3unf_D* 3unh_D
Probab=80.59 E-value=0.22 Score=44.05 Aligned_cols=36 Identities=6% Similarity=-0.116 Sum_probs=29.6
Q ss_pred ccccccccccccccCCCCCCCCccccccCCccccccccccCCccccCCCCCCCCC
Q psy14210 67 QRSHCVAETQQDHFLSPPLSQSSQHIISGDSCELLHPVYTGGERCGPFSQSSTVP 121 (312)
Q Consensus 67 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dgVv~~~~~~~~~~~ 121 (312)
|++||..+-.++. .++|++++||||+++|++.+.-.
T Consensus 23 QvEya~~av~~Gt-------------------t~vgi~~~dgVvlaaD~r~~~g~ 58 (241)
T 1iru_E 23 QVEYDIEAIKLGS-------------------TAIGIQTSEGVCLAVEKRITSPL 58 (241)
T ss_dssp HHHHHHHHHTTSC-------------------CEEEEEETTEEEEEEECCCCCTT
T ss_pred HHHHHHHHHHcCC-------------------cEEEEEcCCEEEEEEecccCCcC
Confidence 8888877766655 78999999999999999876643
No 58
>3h4p_A Proteasome subunit alpha; core particle, cytoplasm, hydrolase, protease, threonine protease; 4.10A {Methanocaldococcus jannaschii}
Probab=79.18 E-value=0.37 Score=43.52 Aligned_cols=35 Identities=6% Similarity=-0.059 Sum_probs=30.1
Q ss_pred ccccccccccccccCCCCCCCCccccccCCccccccccccCCccccCCCCCCCC
Q psy14210 67 QRSHCVAETQQDHFLSPPLSQSSQHIISGDSCELLHPVYTGGERCGPFSQSSTV 120 (312)
Q Consensus 67 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dgVv~~~~~~~~~~ 120 (312)
|++||..+-.++. .++|++++||||+++|++.+..
T Consensus 27 QvEYA~~av~~Gt-------------------t~vgi~~~dgVVlaaD~r~~~~ 61 (264)
T 3h4p_A 27 QVEYAREAVRRGT-------------------TAIGIACKDGVVLAVDRRITSK 61 (264)
T ss_dssp HHHHHHHHHHHSC-------------------CEEEECCSSEEEEEEECCCCST
T ss_pred HHHhHHHHHhcCC-------------------cEEEEEECCEEEEEEecCccCC
Confidence 8999988887766 7899999999999999886653
No 59
>1iru_D 20S proteasome; cell cycle, immune response, proteolysis, ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4 PDB: 3unf_C* 3une_C* 3unh_C 3unb_C*
Probab=78.81 E-value=0.36 Score=42.91 Aligned_cols=35 Identities=9% Similarity=-0.145 Sum_probs=29.1
Q ss_pred ccccccccccccccCCCCCCCCccccccCCccccccccccCCccccCCCCCCCC
Q psy14210 67 QRSHCVAETQQDHFLSPPLSQSSQHIISGDSCELLHPVYTGGERCGPFSQSSTV 120 (312)
Q Consensus 67 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dgVv~~~~~~~~~~ 120 (312)
|++||..+-.+.. .++|++++||||+++|++.+.-
T Consensus 18 QvEYA~~av~~Gt-------------------t~vgi~~~dgVvlaaD~r~~~~ 52 (248)
T 1iru_D 18 QVEYAQEAVKKGS-------------------TAVGVRGRDIVVLGVEKKSVAK 52 (248)
T ss_dssp HHHHHHHHHHTSC-------------------CEEEECCSSEEEEEECCCCCCS
T ss_pred HHHHHHHHHHcCC-------------------CEEEEEeCCEEEEEEeeccccc
Confidence 8888887766655 7899999999999999887653
No 60
>1ryp_B 20S proteasome; multicatalytic proteinase, protein degradation, antigen processing, hydrolase, protease; 1.90A {Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 1fnt_B 1g0u_A* 1jd2_A* 1g65_A 1z7q_B 2f16_A* 2fak_A* 2fny_A* 2gpl_A* 2zcy_A* 3bdm_A* 3d29_A* 3dy3_A* 3dy4_A* 3e47_A* 3gpj_A* 3gpt_A* 3gpw_A* 3hye_A* 3mg0_A* ...
Probab=78.31 E-value=0.39 Score=42.74 Aligned_cols=34 Identities=21% Similarity=0.065 Sum_probs=29.0
Q ss_pred ccccccccccccccCCCCCCCCccccccCCccccccccccCCccccCCCCCCC
Q psy14210 67 QRSHCVAETQQDHFLSPPLSQSSQHIISGDSCELLHPVYTGGERCGPFSQSST 119 (312)
Q Consensus 67 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dgVv~~~~~~~~~ 119 (312)
|++||..+-.+.. .++|++++||||+++|++.+.
T Consensus 20 QvEyA~~av~~Gt-------------------t~vgi~~~dgVvlaaD~r~~~ 53 (250)
T 1ryp_B 20 QIDYALTAVKQGV-------------------TSLGIKATNGVVIATEKKSSS 53 (250)
T ss_dssp HHHHHHHHHHTSC-------------------CEEEEEETTEEEEEEECCCSC
T ss_pred HHHhHHHHHHcCC-------------------cEEEEEECCEEEEEEeccCCC
Confidence 8888888777666 789999999999999988653
No 61
>1j2p_A Alpha-ring, proteasome alpha subunit; hydrolase; 2.60A {Archaeoglobus fulgidus} SCOP: d.153.1.4 PDB: 1j2q_A*
Probab=77.76 E-value=0.34 Score=42.98 Aligned_cols=35 Identities=6% Similarity=-0.121 Sum_probs=28.9
Q ss_pred ccccccccccccccCCCCCCCCccccccCCccccccccccCCccccCCCCCCCC
Q psy14210 67 QRSHCVAETQQDHFLSPPLSQSSQHIISGDSCELLHPVYTGGERCGPFSQSSTV 120 (312)
Q Consensus 67 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dgVv~~~~~~~~~~ 120 (312)
|++|+..+-.+.. .++|++++||||+++|++.+..
T Consensus 23 QvEya~~av~~Gt-------------------t~vgi~~~dgVvlaaD~r~~~~ 57 (246)
T 1j2p_A 23 QVEYAREAVKRGA-------------------TAIGIKCKEGVILIADKRVGSK 57 (246)
T ss_dssp HHHHHHHHHHTSC-------------------CEEEEEETTEEEEEEECCCSCT
T ss_pred HHHhHHHHHHcCC-------------------cEEEEEECCEEEEEEeccCCcc
Confidence 8888877666655 7899999999999999887653
No 62
>1iru_G 20S proteasome; cell cycle, immune response, proteolysis, ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4 PDB: 3unb_F* 3une_F 3unf_F* 3unh_F
Probab=77.46 E-value=0.31 Score=43.54 Aligned_cols=36 Identities=8% Similarity=-0.053 Sum_probs=29.9
Q ss_pred ccccccccccccccCCCCCCCCccccccCCccccccccccCCccccCCCCCCCCC
Q psy14210 67 QRSHCVAETQQDHFLSPPLSQSSQHIISGDSCELLHPVYTGGERCGPFSQSSTVP 121 (312)
Q Consensus 67 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dgVv~~~~~~~~~~~ 121 (312)
|++||..+-.++. .++|++++||||+++|++.+.-+
T Consensus 22 QvEyA~~av~~Gt-------------------t~vgi~~~dgVvlaaD~r~~~g~ 57 (254)
T 1iru_G 22 QVEYAMKAVENSS-------------------TAIGIRCKDGVVFGVEKLVLSKL 57 (254)
T ss_dssp HHHHHHHHHHTSC-------------------CEEEEECSSBEEEEEEEECSCTT
T ss_pred HHHhHHHHHhcCC-------------------CEEEEEECCEEEEEEecccCCCC
Confidence 8888887776665 78999999999999998876543
No 63
>1iru_F 20S proteasome; cell cycle, immune response, proteolysis, ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4 PDB: 3unb_E* 3une_E 3unf_E* 3unh_E
Probab=77.02 E-value=0.36 Score=43.43 Aligned_cols=36 Identities=6% Similarity=-0.081 Sum_probs=30.4
Q ss_pred ccccccccccccccCCCCCCCCccccccCCccccccccccCCccccCCCCCCCCC
Q psy14210 67 QRSHCVAETQQDHFLSPPLSQSSQHIISGDSCELLHPVYTGGERCGPFSQSSTVP 121 (312)
Q Consensus 67 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dgVv~~~~~~~~~~~ 121 (312)
|++||..+-.++. .++|++++||||+++|++.+..+
T Consensus 21 QvEYA~~av~~Gt-------------------t~vgi~~~dgVVlaaD~r~~~gl 56 (263)
T 1iru_F 21 QIEYAMEAVKQGS-------------------ATVGLKSKTHAVLVALKRAQSEL 56 (263)
T ss_dssp HHHHHHHHHHHSC-------------------CEEEEECSSEEEEEEECCCSSTT
T ss_pred HHHHHHHHHHcCC-------------------cEEEEEeCCEEEEEEeccccccc
Confidence 8888887777666 68999999999999999877653
No 64
>1iru_A 20S proteasome; cell cycle, immune response, proteolysis, ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4 PDB: 3unb_G* 3une_G 3unf_G* 3unh_G
Probab=76.90 E-value=0.45 Score=42.16 Aligned_cols=34 Identities=6% Similarity=-0.181 Sum_probs=28.4
Q ss_pred ccccccccccc-cccCCCCCCCCccccccCCccccccccccCCccccCCCCCCC
Q psy14210 67 QRSHCVAETQQ-DHFLSPPLSQSSQHIISGDSCELLHPVYTGGERCGPFSQSST 119 (312)
Q Consensus 67 ~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dgVv~~~~~~~~~ 119 (312)
|++||..+-++ +. .++|++++||||+++|++.+.
T Consensus 24 QvEya~~av~~~Gt-------------------t~vgi~~~dgVvlaaD~r~~~ 58 (246)
T 1iru_A 24 QVEYAFKAINQGGL-------------------TSVAVRGKDCAVIVTQKKVPD 58 (246)
T ss_dssp HHHHHHHHHHTTCC-------------------EEEEEECSSEEEEEEECCCCC
T ss_pred HHHHHHHHHhcCCC-------------------CEEEEEeCCEEEEEEeecCCC
Confidence 88888777766 44 689999999999999988654
No 65
>3nzj_F Proteasome component C1; ubiquitin, protein degradation, N-terminal nucleophilic HYDR 19S regulatory particle; HET: TY5 TRO MES; 2.40A {Saccharomyces cerevisiae} PDB: 1z7q_G* 3nzw_F* 3nzx_F* 3un4_F* 3un8_F* 4b4t_G 4g4s_G* 3bdm_F* 1fnt_G* 2zcy_F*
Probab=76.60 E-value=0.23 Score=45.54 Aligned_cols=36 Identities=8% Similarity=-0.073 Sum_probs=30.0
Q ss_pred ccccccccccccccCCCCCCCCccccccCCccccccccccCCccccCCCCCCCCC
Q psy14210 67 QRSHCVAETQQDHFLSPPLSQSSQHIISGDSCELLHPVYTGGERCGPFSQSSTVP 121 (312)
Q Consensus 67 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dgVv~~~~~~~~~~~ 121 (312)
|++||+.+-.++. .+||++++||||+++|++.+.-+
T Consensus 23 QvEYA~kAv~~Gt-------------------T~Vgik~kdGVVlAaD~r~t~gl 58 (288)
T 3nzj_F 23 QVEYAVKAVENGT-------------------TSIGIKCNDGVVFAVEKLITSKL 58 (288)
T ss_dssp HHHHHHHHHHTSC-------------------CEEEEEETTEEEEEEEEEECCTT
T ss_pred HHHHHHHHHhcCC-------------------cEEEEEECCEEEEEEcCCcccCC
Confidence 8888888877766 78999999999999998766543
No 66
>1ryp_G 20S proteasome; multicatalytic proteinase, protein degradation, antigen processing, hydrolase, protease; 1.90A {Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 1jd2_F* 1g65_F 1vsy_G 2f16_F* 2fak_F* 2fny_F* 2gpl_F* 3d29_F* 3dy3_F* 3dy4_F* 3e47_F* 3gpj_F* 3gpt_F* 3gpw_F* 3hye_F* 3l5q_L 3mg0_F* 3mg4_F* 3okj_F* 3shj_F* ...
Probab=75.41 E-value=0.42 Score=42.41 Aligned_cols=35 Identities=9% Similarity=-0.053 Sum_probs=29.0
Q ss_pred ccccccccccccccCCCCCCCCccccccCCccccccccccCCccccCCCCCCCC
Q psy14210 67 QRSHCVAETQQDHFLSPPLSQSSQHIISGDSCELLHPVYTGGERCGPFSQSSTV 120 (312)
Q Consensus 67 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dgVv~~~~~~~~~~ 120 (312)
|++|+..+-.++. .++|++++||||+++|++.+.-
T Consensus 19 QvEya~~av~~Gt-------------------t~vgi~~~dgVvlaaD~r~~~g 53 (244)
T 1ryp_G 19 QVEYAVKAVENGT-------------------TSIGIKCNDGVVFAVEKLITSK 53 (244)
T ss_dssp HHHHHHHHHHTSC-------------------CEEEEEETTEEEEEEEEECCCT
T ss_pred HHHhHHHHHHCCC-------------------CEEEEEECCEEEEEEecccCCC
Confidence 8888877766665 7899999999999999876554
No 67
>1q5q_A Proteasome alpha-type subunit 1; proteasome assembly, Pro-peptide, inter-subunit contacts, RH erythropolis, hydrolase; 2.60A {Rhodococcus erythropolis} SCOP: d.153.1.4 PDB: 2h6j_A 1q5r_A
Probab=71.63 E-value=0.64 Score=41.72 Aligned_cols=59 Identities=3% Similarity=-0.115 Sum_probs=41.7
Q ss_pred ccccccccccccccCCCCCCCCccccccCCccccccccccCCccccCCCCCCCC--CCCCcceEEEecCeEEEEEeCChh
Q psy14210 67 QRSHCVAETQQDHFLSPPLSQSSQHIISGDSCELLHPVYTGGERCGPFSQSSTV--PHNTSFQVIPVSSSILCTLAGNAA 144 (312)
Q Consensus 67 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dgVv~~~~~~~~~~--~~~~~~KI~~I~d~i~~a~sG~~a 144 (312)
|++||..+-.++. .+||++++||||+++|+++... +....++|.- ...|..+..-
T Consensus 16 qvEYA~~av~~Gt-------------------t~vgi~~~dgVVlaaD~rs~~~~KI~~I~d~i~~----~~aG~~aD~~ 72 (259)
T 1q5q_A 16 RSELARKGIARGR-------------------SVVVLTFRDGVLFVAENPSTALHKVSELYDRLGF----AAVGKYNEFE 72 (259)
T ss_dssp HHHHHHHHHHTSC-------------------CEEEEECSSEEEEEECCSCSSSCSEEEEETTEEE----EEEECHHHHH
T ss_pred HHHHHHHHHhcCC-------------------cEEEEEeCCEEEEEEecCCCCcCcEEEeCCCEEE----EEccCHHHHH
Confidence 6778776665555 7899999999999999985443 3345666653 4567777766
Q ss_pred HHHH
Q psy14210 145 DCVY 148 (312)
Q Consensus 145 D~q~ 148 (312)
-...
T Consensus 73 ~l~~ 76 (259)
T 1q5q_A 73 NLRR 76 (259)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 5555
No 68
>3mi0_A Proteasome subunit alpha; enzyme inhibitors, lactones, proteasome endopeptidase comple mycobacterium tuberculosis, hydrolase; HET: SA6; 2.20A {Mycobacterium tuberculosis} SCOP: d.153.1.4 PDB: 3h6f_A 3krd_A* 3h6i_A* 3mka_A 2fhh_A* 2fhg_A 3hfa_D 3hf9_A 3mfe_D
Probab=54.53 E-value=1.7 Score=38.69 Aligned_cols=80 Identities=10% Similarity=-0.063 Sum_probs=44.5
Q ss_pred ccccccccCCccccCCCCCCCC--CCCCcceEEEecCeEEEEEeCChhHHHHHHHHH-HHHhhhhh-hhcCCccCHHHHH
Q psy14210 99 ELLHPVYTGGERCGPFSQSSTV--PHNTSFQVIPVSSSILCTLAGNAADCVYWLHSL-AKECKGYE-CKYRTGMTIRHAA 174 (312)
Q Consensus 99 ~~~~~~~~dgVv~~~~~~~~~~--~~~~~~KI~~I~d~i~~a~sG~~aD~q~l~~~l-r~~~~~~~-~~~g~~i~v~~la 174 (312)
+++|++++||||+++|+++... .....++|.- .+.|.++..--....++.. +.+-..|. ..-.-..-...++
T Consensus 29 T~vgi~~kdgVVlaadkr~~~~~KI~~I~d~i~~----~~aG~~aD~~~l~~~~~~~~~l~~~~~~~~~i~v~~la~~l~ 104 (248)
T 3mi0_A 29 SVVALAYAGGVLFVAENPSRSLQKISELYDRVGF----AAAGKFNEFDNLRRGGIQFADTRGYAYDRRDVTGRQLANVYA 104 (248)
T ss_dssp CEEEEEETTEEEEEEECCCSSSCSEEEEETTEEE----EEEECHHHHHHHHHHHHHHHHHHHHHSCGGGCCHHHHHHHHH
T ss_pred cEEEEEeCCEEEEEEeCCCCCCCCeEEECCCEEE----EEccCHHHHHHHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHH
Confidence 7899999999999999875443 2344566653 4556666655554444332 22222222 2222223345566
Q ss_pred HHHHHHHH
Q psy14210 175 NLLVNMVR 182 (312)
Q Consensus 175 ~~ls~~l~ 182 (312)
+.+.....
T Consensus 105 ~~l~q~yt 112 (248)
T 3mi0_A 105 QTLGTIFT 112 (248)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHhc
Confidence 55555543
No 69
>1yar_H Proteasome beta subunit; proteasome 20S, PA26 proteasome activator 11S, hydrolase-HYD activator complex; 1.90A {Thermoplasma acidophilum} SCOP: d.153.1.4 PDB: 1ya7_H 1yau_H 3ipm_H 1pma_B 3jrm_H 3c92_H 3c91_H 3jse_H 3jtl_H
Probab=48.60 E-value=3.7 Score=35.39 Aligned_cols=24 Identities=0% Similarity=-0.140 Sum_probs=19.2
Q ss_pred CccccccccccCCccccCCCCCCC
Q psy14210 96 DSCELLHPVYTGGERCGPFSQSST 119 (312)
Q Consensus 96 ~~~~~~~~~~~dgVv~~~~~~~~~ 119 (312)
.+..++|++++||||+++|++.+.
T Consensus 7 ~Gtt~vgi~~~dgVvlaaD~r~~~ 30 (217)
T 1yar_H 7 TGTTTVGITLKDAVIMATERRVTM 30 (217)
T ss_dssp --CCEEEEEETTEEEEEECCCEEE
T ss_pred CCccEEEEEeCCEEEEEEcCCCCC
Confidence 455789999999999999987543
No 70
>2z3b_A ATP-dependent protease HSLV; N-terminal nucleophIle hydrolase; 2.50A {Bacillus subtilis} SCOP: d.153.1.4 PDB: 2z3a_A 1yyf_D* 3ty6_A
Probab=47.85 E-value=4.3 Score=34.01 Aligned_cols=23 Identities=9% Similarity=-0.010 Sum_probs=19.7
Q ss_pred ccccccccccCCccccCCCCCCC
Q psy14210 97 SCELLHPVYTGGERCGPFSQSST 119 (312)
Q Consensus 97 ~~~~~~~~~~dgVv~~~~~~~~~ 119 (312)
+-.++|++++|||++|+|++.+.
T Consensus 5 GtTivgi~~~dgVvlaaD~r~t~ 27 (180)
T 2z3b_A 5 ATTIFAVQHKGRSAMSGDGQVTF 27 (180)
T ss_dssp CCCEEEEEETTEEEEEECCCEEE
T ss_pred CeEEEEEEECCEEEEEECCCccC
Confidence 55789999999999999987543
No 71
>1ryp_J 20S proteasome; multicatalytic proteinase, protein degradation, antigen processing, hydrolase, protease; 1.90A {Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 1jd2_I* 1g65_I 1vsy_J 2f16_I* 2fak_I* 2fny_I* 2gpl_I* 3d29_I* 3dy3_I* 3dy4_I* 3e47_I* 3gpj_I* 3gpt_I* 3gpw_I* 3hye_I* 3l5q_N 3mg0_I* 3mg4_I* 3oeu_I* 3oev_I* ...
Probab=46.31 E-value=4.6 Score=34.24 Aligned_cols=26 Identities=0% Similarity=-0.317 Sum_probs=21.4
Q ss_pred CCccccccccccCCccccCCCCCCCC
Q psy14210 95 GDSCELLHPVYTGGERCGPFSQSSTV 120 (312)
Q Consensus 95 ~~~~~~~~~~~~dgVv~~~~~~~~~~ 120 (312)
-.+-.++|++++|||++++|++.+.-
T Consensus 6 ~~Gtt~vgi~~~dgVvlaaD~r~~~g 31 (204)
T 1ryp_J 6 INGGIVVAMTGKDCVAIACDLRLGSQ 31 (204)
T ss_dssp SSCCEEEEEECSSEEEEEEECCEEET
T ss_pred CCCCeEEEEEeCCEEEEEEcCCcccC
Confidence 34567999999999999999886553
No 72
>1iru_J 20S proteasome; cell cycle, immune response, proteolysis, ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4 PDB: 3unb_I* 3une_I 3unf_I* 3unh_I
Probab=44.61 E-value=5 Score=34.07 Aligned_cols=26 Identities=0% Similarity=-0.249 Sum_probs=21.4
Q ss_pred CCccccccccccCCccccCCCCCCCC
Q psy14210 95 GDSCELLHPVYTGGERCGPFSQSSTV 120 (312)
Q Consensus 95 ~~~~~~~~~~~~dgVv~~~~~~~~~~ 120 (312)
..+..++|++++|||++++|++.+.-
T Consensus 6 ~~Gtt~vgi~~~dgVvlaaD~r~~~g 31 (205)
T 1iru_J 6 YNGGAVMAMKGKNCVAIAADRRFGIQ 31 (205)
T ss_dssp SSCCEEEEEECSSEEEEEEECCEEET
T ss_pred CCCCeEEEEEeCCEEEEEECCccccC
Confidence 34567999999999999999886553
No 73
>1ryp_M 20S proteasome; multicatalytic proteinase, protein degradation, antigen processing, hydrolase, protease; 1.90A {Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 1fnt_M* 1jd2_L* 1g65_L 1vsy_M 1z7q_M 2f16_L* 2fak_L* 2fny_L* 2gpl_L* 3d29_L* 3dy3_L* 3dy4_L* 3e47_L* 3gpj_L* 3gpt_L* 3gpw_L* 3hye_L* 3l5q_Q 3mg0_L* 3mg4_L* ...
Probab=43.65 E-value=6.1 Score=34.13 Aligned_cols=25 Identities=8% Similarity=-0.133 Sum_probs=20.9
Q ss_pred CCccccccccccCCccccCCCCCCC
Q psy14210 95 GDSCELLHPVYTGGERCGPFSQSST 119 (312)
Q Consensus 95 ~~~~~~~~~~~~dgVv~~~~~~~~~ 119 (312)
..+..++|++++||||+|+|++.+.
T Consensus 7 ~~Gtt~vgi~~~dgVvlaaD~r~~~ 31 (222)
T 1ryp_M 7 DNGGTILGIAGEDFAVLAGDTRNIT 31 (222)
T ss_dssp CCCCEEEEEECSSCEEEEEECCEEE
T ss_pred cCCccEEEEEeCCEEEEEEeccccc
Confidence 3456789999999999999987654
No 74
>1m4y_A ATP-dependent protease HSLV; N-terminal catalytic threonine residue, hydrolase; 2.10A {Thermotoga maritima} SCOP: d.153.1.4
Probab=43.52 E-value=4.9 Score=33.18 Aligned_cols=21 Identities=19% Similarity=0.067 Sum_probs=18.1
Q ss_pred ccccccccCCccccCCCCCCC
Q psy14210 99 ELLHPVYTGGERCGPFSQSST 119 (312)
Q Consensus 99 ~~~~~~~~dgVv~~~~~~~~~ 119 (312)
.++|++++|||++|+|++.+.
T Consensus 2 t~vgi~~~dgVvlaaD~r~~~ 22 (171)
T 1m4y_A 2 TILVVRRNGQTVMGGDGQVTF 22 (171)
T ss_dssp CEEEEEETTEEEEEECCCEEE
T ss_pred eEEEEEECCEEEEEECCCccc
Confidence 479999999999999988553
No 75
>1g3k_A ATP-dependent protease HSLV; hydrolase; 1.90A {Haemophilus influenzae} SCOP: d.153.1.4 PDB: 1g3i_G 1jjw_A 1kyi_G* 1ofh_G* 1ofi_G* 1e94_A* 1g4a_B* 1g4b_M 1hqy_A* 1ht1_C* 1ht2_A* 1ned_A
Probab=43.07 E-value=5 Score=33.25 Aligned_cols=21 Identities=19% Similarity=0.072 Sum_probs=18.3
Q ss_pred ccccccccCCccccCCCCCCC
Q psy14210 99 ELLHPVYTGGERCGPFSQSST 119 (312)
Q Consensus 99 ~~~~~~~~dgVv~~~~~~~~~ 119 (312)
.++|++++|+|++|+|++.+.
T Consensus 2 T~vgi~~~dgVvlaaD~r~t~ 22 (174)
T 1g3k_A 2 TIVSVRRNGQVVVGGDGQVSL 22 (174)
T ss_dssp CEEEEEETTEEEEEECCCEEE
T ss_pred eEEEEEECCEEEEEECCCCcc
Confidence 579999999999999988553
No 76
>3unf_N Proteasome subunit beta type-9; antigen presentation, drug development, protein degradation, hydrolase-hydrolase inhibitor complex; HET: 04C; 2.90A {Mus musculus} PDB: 3unh_N
Probab=42.73 E-value=5.9 Score=33.38 Aligned_cols=21 Identities=24% Similarity=0.373 Sum_probs=17.9
Q ss_pred ccccccccCCccccCCCCCCC
Q psy14210 99 ELLHPVYTGGERCGPFSQSST 119 (312)
Q Consensus 99 ~~~~~~~~dgVv~~~~~~~~~ 119 (312)
.++|++++||||+++|++.+.
T Consensus 2 T~vgi~~~dgVvlaaD~r~~~ 22 (199)
T 3unf_N 2 TIMAVEFDGGVVVGSDSRVSA 22 (199)
T ss_dssp EEEEEECSSCEEEEECCCEEE
T ss_pred eEEEEEeCCeEEEEECCcccC
Confidence 478999999999999987543
No 77
>1iru_M 20S proteasome; cell cycle, immune response, proteolysis, ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4 PDB: 3unb_L* 3une_L 3unf_L* 3unh_L
Probab=41.47 E-value=5.9 Score=33.83 Aligned_cols=25 Identities=8% Similarity=-0.175 Sum_probs=20.9
Q ss_pred CCccccccccccCCccccCCCCCCC
Q psy14210 95 GDSCELLHPVYTGGERCGPFSQSST 119 (312)
Q Consensus 95 ~~~~~~~~~~~~dgVv~~~~~~~~~ 119 (312)
..+-.++|++++||||+|+|++.+.
T Consensus 7 ~~Gtt~vgi~~~dgVvlaaD~r~~~ 31 (213)
T 1iru_M 7 FNGGTILAIAGEDFAIVASDTRLSE 31 (213)
T ss_dssp CCCCEEEEEEETTEEEEEEECCEEE
T ss_pred CCCCcEEEEEeCCEEEEEECCCccc
Confidence 3456789999999999999988654
No 78
>1ryp_H 20S proteasome; multicatalytic proteinase, protein degradation, antigen processing, hydrolase, protease; 1.90A {Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 3nzj_N* 3nzw_N* 3nzx_N* 1vsy_H 3l5q_B 1g65_N* 1fnt_H 1g0u_N* 1jd2_N* 1z7q_H 2f16_N* 2fak_N* 2fny_N* 2gpl_N* 2zcy_N* 3bdm_N* 3d29_N* 3dy3_N* 3dy4_N* 3e47_N* ...
Probab=41.29 E-value=6.2 Score=33.50 Aligned_cols=23 Identities=17% Similarity=0.317 Sum_probs=19.5
Q ss_pred ccccccccccCCccccCCCCCCC
Q psy14210 97 SCELLHPVYTGGERCGPFSQSST 119 (312)
Q Consensus 97 ~~~~~~~~~~dgVv~~~~~~~~~ 119 (312)
+-.++|++++|||++++|++.+.
T Consensus 9 Gtt~vgi~~~dgVvlaaD~r~~~ 31 (205)
T 1ryp_H 9 GASIMAVTFKDGVILGADSRTTT 31 (205)
T ss_dssp CCCEEEEEETTEEEEEECCCEEE
T ss_pred CceEEEEEeCCEEEEEEcCCccc
Confidence 45689999999999999987654
No 79
>1g0u_M Proteasome component PRE4; ubiquitin, degradation, protease, NTN-hydrolase; 2.40A {Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 2zcy_M* 3bdm_M* 3mg6_M* 3mg7_M* 3mg8_M* 3nzj_M* 3nzw_M* 3nzx_M*
Probab=39.95 E-value=5.6 Score=35.53 Aligned_cols=30 Identities=17% Similarity=0.202 Sum_probs=22.4
Q ss_pred CccccccCCccccccccccCCccccCCCCCCC
Q psy14210 88 SSQHIISGDSCELLHPVYTGGERCGPFSQSST 119 (312)
Q Consensus 88 ~~~~~~~~~~~~~~~~~~~dgVv~~~~~~~~~ 119 (312)
.-+++.. +-.++|++++||||+|+|++.+.
T Consensus 34 ~~~av~~--GtT~vgi~~~dgVVlAaD~r~t~ 63 (266)
T 1g0u_M 34 TQQPIVT--GTSVISMKYDNGVIIAADNLGSY 63 (266)
T ss_dssp CCCCCEE--ECCEEEEEETTEEEEEEECCEEE
T ss_pred hccCccc--CceEEEEEECCEEEEEEcCCccc
Confidence 3344444 44689999999999999987543
No 80
>1q5q_H Proteasome beta-type subunit 1; proteasome assembly, Pro-peptide, inter-subunit contacts, RH erythropolis, hydrolase; 2.60A {Rhodococcus erythropolis} SCOP: d.153.1.4
Probab=38.34 E-value=7.7 Score=33.81 Aligned_cols=20 Identities=15% Similarity=0.255 Sum_probs=17.6
Q ss_pred ccccccccCCccccCCCCCC
Q psy14210 99 ELLHPVYTGGERCGPFSQSS 118 (312)
Q Consensus 99 ~~~~~~~~dgVv~~~~~~~~ 118 (312)
.++|++++||||+++|++.+
T Consensus 2 T~vgi~~~dgVVlaaD~r~~ 21 (235)
T 1q5q_H 2 TIVALTYKGGVLLAGDRRAT 21 (235)
T ss_dssp CEEEEECSSCEEEEECCCEE
T ss_pred eEEEEEECCEEEEEECCCCC
Confidence 47899999999999998754
No 81
>1iru_I 20S proteasome; cell cycle, immune response, proteolysis, ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4 PDB: 3unb_H* 3une_H
Probab=38.28 E-value=4.1 Score=35.70 Aligned_cols=21 Identities=19% Similarity=0.287 Sum_probs=18.5
Q ss_pred ccccccccCCccccCCCCCCC
Q psy14210 99 ELLHPVYTGGERCGPFSQSST 119 (312)
Q Consensus 99 ~~~~~~~~dgVv~~~~~~~~~ 119 (312)
.++|++++|||++|+|++.+.
T Consensus 2 Tivgi~~~dgVVlaaD~r~t~ 22 (234)
T 1iru_I 2 TIAGVVYKDGIVLGADTRATE 22 (234)
T ss_dssp CEEEEEETTEEEEEECCCEES
T ss_pred eEEEEEeCCEEEEEEcCCccc
Confidence 479999999999999998655
No 82
>1ryp_K 20S proteasome; multicatalytic proteinase, protein degradation, antigen processing, hydrolase, protease; 1.90A {Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 1fnt_K 1g0u_J* 1jd2_J* 1g65_J 1vsy_K 1z7q_K 2f16_J* 2fak_J* 2fny_J* 2gpl_J* 2zcy_J* 3bdm_J* 3d29_J* 3dy3_J* 3dy4_J* 3e47_J* 3gpj_J* 3gpt_J* 3gpw_J* 3hye_J* ...
Probab=37.81 E-value=7 Score=32.89 Aligned_cols=21 Identities=5% Similarity=-0.156 Sum_probs=18.3
Q ss_pred ccccccccCCccccCCCCCCC
Q psy14210 99 ELLHPVYTGGERCGPFSQSST 119 (312)
Q Consensus 99 ~~~~~~~~dgVv~~~~~~~~~ 119 (312)
.++|++++||||+++|++.+.
T Consensus 3 t~vgi~~~dgVvlaaD~r~~~ 23 (198)
T 1ryp_K 3 IILGIRVQDSVILASSKAVTR 23 (198)
T ss_dssp CEEEEECSSCEEEEEECCEEE
T ss_pred eEEEEEECCEEEEEECCCccc
Confidence 579999999999999988654
No 83
>2jay_A Proteasome; hydrolase; 1.99A {Mycobacterium tuberculosis} PDB: 3mka_C 3mi0_C* 2fhg_H* 2fhh_H 3krd_C* 3mfe_G 3hfa_H* 3h6i_C 3h6f_C 3hf9_H 3mfe_H
Probab=37.43 E-value=6 Score=36.05 Aligned_cols=24 Identities=17% Similarity=0.220 Sum_probs=17.7
Q ss_pred CccccccccccCCccccCCCCCCC
Q psy14210 96 DSCELLHPVYTGGERCGPFSQSST 119 (312)
Q Consensus 96 ~~~~~~~~~~~dgVv~~~~~~~~~ 119 (312)
.+-.++|++++||||+|+|++.+.
T Consensus 56 ~GtTiVgi~~kdGVVlAaD~r~t~ 79 (291)
T 2jay_A 56 HGTTIVALKYPGGVVMAGDRRSTQ 79 (291)
T ss_dssp --CCEEEEEETTEEEEEECCC---
T ss_pred CCcEEEEEEECCEEEEEECCCccC
Confidence 355689999999999999988654
No 84
>1ryp_L 20S proteasome; multicatalytic proteinase, protein degradation, antigen processing, hydrolase, protease; 1.90A {Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 1fnt_L 1vsy_L 1z7q_L 3l5q_P 1g65_K* 1g0u_K* 1jd2_K* 2f16_K* 2fak_K* 2fny_K* 2gpl_K* 2zcy_K* 3bdm_K* 3d29_K* 3dy3_K* 3dy4_K* 3e47_K* 3gpj_K* 3gpt_K* 3gpw_K* ...
Probab=37.40 E-value=6.9 Score=33.38 Aligned_cols=21 Identities=19% Similarity=0.165 Sum_probs=18.0
Q ss_pred ccccccccCCccccCCCCCCC
Q psy14210 99 ELLHPVYTGGERCGPFSQSST 119 (312)
Q Consensus 99 ~~~~~~~~dgVv~~~~~~~~~ 119 (312)
.++|++++|||++++|++.+.
T Consensus 2 t~vgi~~~dgVvlaaD~r~~~ 22 (212)
T 1ryp_L 2 TTLAFRFQGGIIVAVDSRATA 22 (212)
T ss_dssp CEEEEEETTEEEEEECCCEEE
T ss_pred cEEEEEeCCEEEEEEcCCccc
Confidence 478999999999999987643
No 85
>1iru_H 20S proteasome; cell cycle, immune response, proteolysis, ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4 PDB: 3unb_N* 3une_N
Probab=37.20 E-value=7 Score=33.11 Aligned_cols=21 Identities=24% Similarity=0.412 Sum_probs=18.1
Q ss_pred ccccccccCCccccCCCCCCC
Q psy14210 99 ELLHPVYTGGERCGPFSQSST 119 (312)
Q Consensus 99 ~~~~~~~~dgVv~~~~~~~~~ 119 (312)
.++|++++|||++++|++.+.
T Consensus 2 t~vgi~~~dgVvlaaD~r~~~ 22 (205)
T 1iru_H 2 TIMAVQFDGGVVLGADSRTTT 22 (205)
T ss_dssp CEEEEEETTEEEEEECCCEEE
T ss_pred cEEEEEeCCEEEEEEcCCccc
Confidence 478999999999999987654
No 86
>3h4p_a Proteasome subunit beta; core particle, cytoplasm, hydrolase, protease, threonine protease; 4.10A {Methanocaldococcus jannaschii}
Probab=36.97 E-value=8.1 Score=33.30 Aligned_cols=21 Identities=5% Similarity=-0.096 Sum_probs=18.1
Q ss_pred ccccccccCCccccCCCCCCC
Q psy14210 99 ELLHPVYTGGERCGPFSQSST 119 (312)
Q Consensus 99 ~~~~~~~~dgVv~~~~~~~~~ 119 (312)
.++|++++||||+++|++.+.
T Consensus 3 t~vgi~~~dgVvlaaD~r~~~ 23 (219)
T 3h4p_a 3 TTVGLICDDAVILATDKRASL 23 (219)
T ss_dssp CEEEEEETTEEEEECCCCEEE
T ss_pred cEEEEEECCEEEEEEcCCccc
Confidence 579999999999999987543
No 87
>3nzj_K Proteasome component PRE2; ubiquitin, protein degradation, N-terminal nucleophilic HYDR 19S regulatory particle; HET: TY5 TRO MES; 2.40A {Saccharomyces cerevisiae} PDB: 3nzw_K* 3nzx_K* 4b4t_5
Probab=35.81 E-value=7.8 Score=35.21 Aligned_cols=24 Identities=17% Similarity=0.148 Sum_probs=18.6
Q ss_pred CCccccccccccCCccccCCCCCC
Q psy14210 95 GDSCELLHPVYTGGERCGPFSQSS 118 (312)
Q Consensus 95 ~~~~~~~~~~~~dgVv~~~~~~~~ 118 (312)
..+..++|++++||||+|+|++.+
T Consensus 73 ~~GtT~vgik~~dGVVlAaD~r~t 96 (287)
T 3nzj_K 73 AHGTTTLAFRFQGGIIVAVDSRAT 96 (287)
T ss_dssp ---CCEEEEEETTEEEEEECCCEE
T ss_pred ccCceEEEEEECCEEEEEEccccc
Confidence 445568999999999999998754
No 88
>1q5r_H Proteasome beta-type subunit 1; proteasome assembly, Pro-peptide, inter-subunit contacts, hydrolase; 3.10A {Rhodococcus erythropolis} SCOP: d.153.1.4 PDB: 2h6j_H
Probab=35.34 E-value=10 Score=34.53 Aligned_cols=23 Identities=13% Similarity=0.226 Sum_probs=19.7
Q ss_pred CccccccccccCCccccCCCCCC
Q psy14210 96 DSCELLHPVYTGGERCGPFSQSS 118 (312)
Q Consensus 96 ~~~~~~~~~~~dgVv~~~~~~~~ 118 (312)
.+-.+||++++||||+++|++.+
T Consensus 64 ~GtTiVgIk~kdGVVlAaD~r~t 86 (294)
T 1q5r_H 64 HGTTIVALTYKGGVLLAGDRRAT 86 (294)
T ss_dssp BCCCEEEEECSSCEEEEECCCEE
T ss_pred cCceEEEEEECCEEEEEEcCccc
Confidence 35568999999999999998754
No 89
>1iru_L 20S proteasome; cell cycle, immune response, proteolysis, ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4 PDB: 3unb_K* 3une_K 3unf_K* 3unh_K
Probab=35.23 E-value=7.9 Score=32.76 Aligned_cols=21 Identities=14% Similarity=0.086 Sum_probs=18.0
Q ss_pred ccccccccCCccccCCCCCCC
Q psy14210 99 ELLHPVYTGGERCGPFSQSST 119 (312)
Q Consensus 99 ~~~~~~~~dgVv~~~~~~~~~ 119 (312)
.++|++++||||+++|++.+.
T Consensus 2 t~vgi~~~dgVvlaaD~r~~~ 22 (204)
T 1iru_L 2 TTLAFKFRHGVIVAADSRATA 22 (204)
T ss_dssp CEEEEEETTEEEEEECCCEEE
T ss_pred eEEEEEeCCEEEEEEcCCccc
Confidence 478999999999999987654
No 90
>1iru_N 20S proteasome; cell cycle, immune response, proteolysis, ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4 PDB: 3unb_M* 3une_M 3unf_M* 3unh_M
Probab=35.01 E-value=6.9 Score=33.57 Aligned_cols=23 Identities=17% Similarity=0.121 Sum_probs=19.3
Q ss_pred ccccccccccCCccccCCCCCCC
Q psy14210 97 SCELLHPVYTGGERCGPFSQSST 119 (312)
Q Consensus 97 ~~~~~~~~~~dgVv~~~~~~~~~ 119 (312)
+..++|++++||||+++|++.+.
T Consensus 8 Gtt~vgi~~~dgVvlaaD~r~~~ 30 (219)
T 1iru_N 8 GTSVLGVKFEGGVVIAADMLGSY 30 (219)
T ss_dssp ECCCEEEEETTEEEEEEECCEEE
T ss_pred CceEEEEEeCCEEEEEECCcccc
Confidence 44689999999999999987543
No 91
>1j2q_H Proteasome beta subunit; ubiquitin, CP, hydrolase; HET: CIB; 2.83A {Archaeoglobus fulgidus} SCOP: d.153.1.4
Probab=34.96 E-value=7 Score=33.04 Aligned_cols=21 Identities=10% Similarity=0.033 Sum_probs=17.9
Q ss_pred ccccccccCCccccCCCCCCC
Q psy14210 99 ELLHPVYTGGERCGPFSQSST 119 (312)
Q Consensus 99 ~~~~~~~~dgVv~~~~~~~~~ 119 (312)
.++|++++||||+++|++.+.
T Consensus 2 t~vgi~~~dgVvlaad~r~~~ 22 (202)
T 1j2q_H 2 TTVGLVCKDGVVMATEKRATM 22 (202)
T ss_dssp CEEEEEETTEEEEEEECCEEE
T ss_pred cEEEEEeCCEEEEEECCCcCc
Confidence 478999999999999987543
No 92
>1vd2_A Protein kinase C, IOTA type; PB1 domain, OPCA motif, APKC, ZIP/P62, MEK5, molecular recognition, transferase; NMR {Homo sapiens} SCOP: d.15.2.2 PDB: 1wmh_A
Probab=34.68 E-value=72 Score=23.73 Aligned_cols=50 Identities=10% Similarity=0.086 Sum_probs=38.2
Q ss_pred CCCCCHHHHHHHHHHHHHHHHHhcCcCCCcEEEEEEECCC--eEEeChhHHHHHHHHH
Q psy14210 247 RPDLSEEEAYALATSAIYHACRRDIHSGGCVRLYKINGQG--WQQVLSRDVKDIYNDR 302 (312)
Q Consensus 247 ~~~ms~eEAi~la~kaL~~a~~rD~~sg~~ieI~iItk~G--~~~l~~~eI~~~l~~~ 302 (312)
.++++.++..+-+.+.++. ..+.++.+.+++.+| +.+.+.+|+++-+.-+
T Consensus 23 ~~~i~~~~L~~kv~~~~~~------~~~~~f~lky~DEeGD~itisSd~EL~eAl~l~ 74 (89)
T 1vd2_A 23 EPSISFEGLCNEVRDMCSF------DNEQLFTMKWIDEEGDPCTVSSQLELEEAFRLY 74 (89)
T ss_dssp CTTCCHHHHHHHHHHHTTC------CSSCCEEEEECCSSSCCEECCSHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHhCC------CCCCeEEEEEECCCCCcccccCHHHHHHHHHHH
Confidence 4578888887776664432 245789999999976 7888999999988744
No 93
>1iru_K 20S proteasome; cell cycle, immune response, proteolysis, ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4 PDB: 3unb_J* 3une_J 3unf_J* 3unh_J
Probab=34.50 E-value=7.3 Score=32.90 Aligned_cols=21 Identities=5% Similarity=-0.233 Sum_probs=18.1
Q ss_pred ccccccccCCccccCCCCCCC
Q psy14210 99 ELLHPVYTGGERCGPFSQSST 119 (312)
Q Consensus 99 ~~~~~~~~dgVv~~~~~~~~~ 119 (312)
.++|++++||||+++|++.+.
T Consensus 3 t~vgi~~~dgVvlaaD~r~~~ 23 (201)
T 1iru_K 3 YLIGIQGPDYVLVASDRVAAS 23 (201)
T ss_dssp CEEEEECSSEEEEEEECCEEE
T ss_pred eEEEEEeCCEEEEEEcCcccc
Confidence 479999999999999987543
No 94
>3nzj_H Proteasome component PUP1; ubiquitin, protein degradation, N-terminal nucleophilic HYDR 19S regulatory particle; HET: TY5 TRO MES; 2.40A {Saccharomyces cerevisiae} PDB: 3nzw_H* 3nzx_H* 4b4t_2
Probab=33.79 E-value=7.7 Score=34.68 Aligned_cols=24 Identities=8% Similarity=0.142 Sum_probs=19.1
Q ss_pred CccccccccccCCccccCCCCCCC
Q psy14210 96 DSCELLHPVYTGGERCGPFSQSST 119 (312)
Q Consensus 96 ~~~~~~~~~~~dgVv~~~~~~~~~ 119 (312)
.+..++|++++||||+|+|++.+.
T Consensus 28 ~GtTivgi~~kdGVVlAaD~r~t~ 51 (261)
T 3nzj_H 28 TGTTIVGVKFNNGVVIAADTRSTQ 51 (261)
T ss_dssp --CCEEEEEETTEEEEEEECCEEE
T ss_pred cCceEEEEEECCEEEEEEcCCccc
Confidence 445689999999999999987543
No 95
>1ryp_I 20S proteasome; multicatalytic proteinase, protein degradation, antigen processing, hydrolase, protease; 1.90A {Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 1g0u_H* 1jd2_H* 1g65_H 1vsy_I 1z7q_I 2f16_H* 2fak_H* 2fny_H* 2gpl_H* 3d29_H* 3dy3_H* 3dy4_H* 3e47_H* 3gpj_H* 3gpt_H* 3gpw_H* 3hye_H* 3l5q_M 3mg0_H* 3mg4_H* ...
Probab=33.77 E-value=8.6 Score=33.19 Aligned_cols=21 Identities=10% Similarity=0.164 Sum_probs=18.1
Q ss_pred ccccccccCCccccCCCCCCC
Q psy14210 99 ELLHPVYTGGERCGPFSQSST 119 (312)
Q Consensus 99 ~~~~~~~~dgVv~~~~~~~~~ 119 (312)
.++|++++|||++|+|++.+.
T Consensus 2 T~vgi~~~dgVvlaaD~r~t~ 22 (222)
T 1ryp_I 2 TIVGVKFNNGVVIAADTRSTQ 22 (222)
T ss_dssp CEEEEEETTEEEEEECCCEEE
T ss_pred eEEEEEECCEEEEEEcCCccc
Confidence 478999999999999988654
No 96
>1ryp_N 20S proteasome; multicatalytic proteinase, protein degradation, antigen processing, hydrolase, protease; 1.90A {Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 1fnt_N* 1jd2_M* 1g65_M 1vsy_N 1z7q_N 2f16_M* 2fak_M* 2fny_M* 2gpl_M* 3d29_M* 3dy3_M* 3dy4_M* 3e47_M* 3gpj_M* 3gpt_M* 3gpw_M* 3hye_M* 3l5q_R 3mg0_M* 3mg4_M* ...
Probab=33.44 E-value=7.5 Score=33.75 Aligned_cols=23 Identities=13% Similarity=0.091 Sum_probs=19.2
Q ss_pred ccccccccccCCccccCCCCCCC
Q psy14210 97 SCELLHPVYTGGERCGPFSQSST 119 (312)
Q Consensus 97 ~~~~~~~~~~dgVv~~~~~~~~~ 119 (312)
+..++|++++||||+|+|++.+.
T Consensus 8 Gtt~vgi~~~dgVvlaaD~r~~~ 30 (233)
T 1ryp_N 8 GTSVISMKYDNGVIIAADNLGSY 30 (233)
T ss_dssp ECCEEEEEETTEEEEEEECCEEE
T ss_pred CceEEEEEECCEEEEEEcCcccc
Confidence 34689999999999999987543
No 97
>3unf_H Proteasome subunit beta type-10; antigen presentation, drug development, protein degradation, hydrolase-hydrolase inhibitor complex; HET: 04C; 2.90A {Mus musculus} PDB: 3unh_H
Probab=33.02 E-value=9.1 Score=33.53 Aligned_cols=21 Identities=14% Similarity=0.248 Sum_probs=18.0
Q ss_pred ccccccccCCccccCCCCCCC
Q psy14210 99 ELLHPVYTGGERCGPFSQSST 119 (312)
Q Consensus 99 ~~~~~~~~dgVv~~~~~~~~~ 119 (312)
.++|++++|||++|+|++.+.
T Consensus 2 T~vgi~~kdgVVlaaD~r~t~ 22 (234)
T 3unf_H 2 TIAGLVFRDGVILGADTRATN 22 (234)
T ss_dssp EEEEEECSSEEEEEECCCEEE
T ss_pred eEEEEEeCCEEEEEECCCccc
Confidence 478999999999999987654
No 98
>3vxv_A Methyl-CPG-binding domain protein 4; methyl CPG binding domain, protein-DNA complex, versatIle BA recognition, hydrolase-DNA complex; HET: DNA 5CM; 2.00A {Mus musculus} PDB: 3vxx_A* 3vyb_A* 3vyq_A*
Probab=24.11 E-value=1e+02 Score=21.77 Aligned_cols=30 Identities=20% Similarity=0.275 Sum_probs=26.7
Q ss_pred CCCcEEEEEEECCCeEEeChhHHHHHHHHH
Q psy14210 273 SGGCVRLYKINGQGWQQVLSRDVKDIYNDR 302 (312)
Q Consensus 273 sg~~ieI~iItk~G~~~l~~~eI~~~l~~~ 302 (312)
+.+..+++.+.+.|-+.-+..||..+|..-
T Consensus 22 s~gk~DvyY~sP~Gkk~RSk~ev~~yL~~~ 51 (69)
T 3vxv_A 22 TAGKFDVYFISPQGLKFRSKRSLANYLLKN 51 (69)
T ss_dssp TTTCEEEEEECTTSCEECSHHHHHHHHHHH
T ss_pred CCCcceEEEEcCCCCEeeCHHHHHHHHHhC
Confidence 446789999999999999999999999874
No 99
>3c2i_A Methyl-CPG-binding protein 2; water mediated recognition; HET: DNA 5CM; 2.50A {Homo sapiens} PDB: 1qk9_A
Probab=23.86 E-value=93 Score=23.60 Aligned_cols=30 Identities=23% Similarity=0.213 Sum_probs=26.9
Q ss_pred CCCcEEEEEEECCCeEEeChhHHHHHHHHH
Q psy14210 273 SGGCVRLYKINGQGWQQVLSRDVKDIYNDR 302 (312)
Q Consensus 273 sg~~ieI~iItk~G~~~l~~~eI~~~l~~~ 302 (312)
+.+..+++.++++|-+.-+..||..+|..-
T Consensus 40 s~gk~DvYY~sP~GkkfRSk~ev~ryL~~~ 69 (97)
T 3c2i_A 40 SAGKYDVYLINPQGKAFRSKVELIMYFEKV 69 (97)
T ss_dssp TTTCEEEEEECTTSCEECSHHHHHHHHHHH
T ss_pred CCCcceEEEECCCCCEEECHHHHHHHHHHC
Confidence 456899999999999999999999999864
No 100
>3fpw_A HBPS, extracellular HAEM-binding protein; heme binding protein; 1.60A {Streptomyces reticuli} PDB: 3fpv_A
Probab=22.40 E-value=1.5e+02 Score=25.16 Aligned_cols=36 Identities=22% Similarity=0.216 Sum_probs=31.2
Q ss_pred CCCCCHHHHHHHHHHHHHHHHHhcCcCCCcEEEEEEECCC
Q psy14210 247 RPDLSEEEAYALATSAIYHACRRDIHSGGCVRLYKINGQG 286 (312)
Q Consensus 247 ~~~ms~eEAi~la~kaL~~a~~rD~~sg~~ieI~iItk~G 286 (312)
.+.+|+++|.+++..++..+.++. .++.|.|+|..|
T Consensus 62 ~~~ltl~~A~~l~~aA~~~A~~~g----~pV~IaVvD~~G 97 (192)
T 3fpw_A 62 STHLTLEAATKAARAAVEAAEKDG----RHVSVAVVDRNG 97 (192)
T ss_dssp CCCCCHHHHHHHHHHHHHHHHHTT----CCCEEEEEETTS
T ss_pred cCCCCHHHHHHHHHHHHHHHHhcC----CCEEEEEEeCCC
Confidence 367999999999999999998754 478999999887
No 101
>2a2l_A Unknown; structural genomics, PSI, protein structure initiat YORK SGX research center for structural genomics, NYSGXRC, function; 2.20A {Klebsiella pneumoniae} SCOP: d.110.9.1
Probab=20.58 E-value=86 Score=25.21 Aligned_cols=35 Identities=14% Similarity=0.115 Sum_probs=30.0
Q ss_pred CCCCHHHHHHHHHHHHHHHHHhcCcCCCcEEEEEEECCC
Q psy14210 248 PDLSEEEAYALATSAIYHACRRDIHSGGCVRLYKINGQG 286 (312)
Q Consensus 248 ~~ms~eEAi~la~kaL~~a~~rD~~sg~~ieI~iItk~G 286 (312)
+.+|+++|.+++..+...+.++ +.++.|.|++..|
T Consensus 10 ~~lt~~~A~~l~~aa~~~A~~~----g~~v~IaVvD~~G 44 (145)
T 2a2l_A 10 QTITLAAAQQMAAAVEKKATEI----NVAVVFSVVDRGG 44 (145)
T ss_dssp EEECHHHHHHHHHHHHHHHHHT----TCCCEEEEEETTS
T ss_pred cCCCHHHHHHHHHHHHHHHHHc----CCCEEEEEEECCC
Confidence 3589999999999999998764 4589999999887
No 102
>2kxe_A DNA polymerase II small subunit; D-family, archara, helical BU transferase; HET: DNA; NMR {Pyrococcus horikoshii}
Probab=20.36 E-value=64 Score=22.88 Aligned_cols=25 Identities=20% Similarity=0.125 Sum_probs=20.6
Q ss_pred HHHHHHHHhhCCC-CCCHHHHHHHHH
Q psy14210 236 EYAQAILDTDYRP-DLSEEEAYALAT 260 (312)
Q Consensus 236 ~~a~~~Le~~y~~-~ms~eEAi~la~ 260 (312)
..|+-+|..+|++ ++|+-|.+++|+
T Consensus 20 PsAYyLL~~~ykkg~FsL~ELiKFAk 45 (75)
T 2kxe_A 20 PSAYYLLVGHFNEGKFSLIELIKFAK 45 (75)
T ss_dssp HHHHHHHHHHHHTTSSCHHHHHHHHH
T ss_pred chHHHHHHHHhhcccccHHHHHHHHH
Confidence 3567788889988 999999998875
Done!