RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy14210
(312 letters)
>gnl|CDD|239730 cd03761, proteasome_beta_type_5, proteasome beta type-5 subunit.
The 20S proteasome, multisubunit proteolytic complex, is
the central enzyme of nonlysosomal protein degradation
in both the cytosol and nucleus. It is composed of 28
subunits arranged as four homoheptameric rings that
stack on top of one another forming an elongated
alpha-beta-beta-alpha cylinder with a central cavity.
The proteasome alpha and beta subunits are members of
the N-terminal nucleophile (Ntn)-hydrolase superfamily.
Their N-terminal threonine residues are exposed as a
nucleophile in peptide bond hydrolysis. Mammals have 7
alpha and 7 beta proteasome subunits while archaea have
one of each.
Length = 188
Score = 171 bits (436), Expect = 5e-53
Identities = 75/180 (41%), Positives = 108/180 (60%), Gaps = 14/180 (7%)
Query: 111 CGPFSQSSTVPHNTSFQVIPVSSSILCTLAGNAADCVYWLHSLAKECKGYECKYRTGMTI 170
G + S TV +VI ++ +L T+AG AADC YW L +EC+ YE + + +++
Sbjct: 22 AGSYIASQTVK-----KVIEINPYLLGTMAGGAADCQYWERVLGRECRLYELRNKERISV 76
Query: 171 RHAANLLVNMVRKYRTGNHSSKIPNGLSFGTLMAAYDEILGPQLYMLDNTGLLIEGTKFC 230
A+ LL NM+ +Y+ GLS GT++ +D+ GP LY +D+ G ++G F
Sbjct: 77 AAASKLLSNMLYQYKG--------MGLSMGTMICGWDK-TGPGLYYVDSDGTRLKGDLFS 127
Query: 231 VGSGAEYAQAILDTDYRPDLSEEEAYALATSAIYHACRRDIHSGGCVRLYKINGQGWQQV 290
VGSG+ YA +LD+ YR DLS EEAY LA AIYHA RD +SGG V LY + GW+++
Sbjct: 128 VGSGSTYAYGVLDSGYRYDLSVEEAYDLARRAIYHATHRDAYSGGNVNLYHVREDGWRKI 187
Score = 51.9 bits (125), Expect = 5e-08
Identities = 18/33 (54%), Positives = 22/33 (66%)
Query: 6 TTTLGFRYPEGIILATDSRATANDLIVSQKLNK 38
TTTL F + G+I+A DSRATA I SQ + K
Sbjct: 1 TTTLAFIFQGGVIVAVDSRATAGSYIASQTVKK 33
>gnl|CDD|238893 cd01912, proteasome_beta, proteasome beta subunit. The 20S
proteasome, multisubunit proteolytic complex, is the
central enzyme of nonlysosomal protein degradation in
both the cytosol and nucleus. It is composed of 28
subunits arranged as four homoheptameric rings that
stack on top of one another forming an elongated
alpha-beta-beta-alpha cylinder with a central cavity.
The proteasome alpha and beta subunits are members of
the N-terminal nucleophile (Ntn)-hydrolase superfamily.
Their N-terminal threonine residues are exposed as a
nucleophile in peptide bond hydrolysis. Mammals have 7
alpha and 7 beta proteasome subunits while archaea have
one of each.
Length = 189
Score = 147 bits (373), Expect = 2e-43
Identities = 55/163 (33%), Positives = 82/163 (50%), Gaps = 8/163 (4%)
Query: 128 VIPVSSSILCTLAGNAADCVYWLHSLAKECKGYECKYRTGMTIRHAANLLVNMVRKYRTG 187
+ +S +IL AG+AAD L + + YE + ++++ AANLL N++ YR
Sbjct: 34 IFKISDNILLGTAGSAADTQALTRLLKRNLRLYELRNGRELSVKAAANLLSNILYSYR-- 91
Query: 188 NHSSKIPNGLSFGTLMAAYDEILGPQLYMLDNTGLLIEGTKFCVGSGAEYAQAILDTDYR 247
++ D+ GP LY +D G LIE GSG++YA ILD Y+
Sbjct: 92 ------GFPYYVSLIVGGVDKGGGPFLYYVDPLGSLIEAPFVATGSGSKYAYGILDRGYK 145
Query: 248 PDLSEEEAYALATSAIYHACRRDIHSGGCVRLYKINGQGWQQV 290
PD++ EEA L AI A RD+ SGG V + I G +++
Sbjct: 146 PDMTLEEAVELVKKAIDSAIERDLSSGGGVDVAVITKDGVEEL 188
Score = 41.7 bits (99), Expect = 1e-04
Identities = 13/33 (39%), Positives = 23/33 (69%)
Query: 6 TTTLGFRYPEGIILATDSRATANDLIVSQKLNK 38
TT +G + +G++LA D+RA+A L+ S+ +K
Sbjct: 1 TTIVGIKGKDGVVLAADTRASAGSLVASRNFDK 33
>gnl|CDD|185666 PTZ00488, PTZ00488, Proteasome subunit beta type-5; Provisional.
Length = 247
Score = 146 bits (369), Expect = 2e-42
Identities = 68/188 (36%), Positives = 109/188 (57%), Gaps = 14/188 (7%)
Query: 112 GPFSQSSTVPHNTSFQVIPVSSSILCTLAGNAADCVYWLHSLAKECKGYECKYRTGMTIR 171
GP+ S +V +VI ++ ++L T+AG AADC +W LA +C+ YE + +++
Sbjct: 62 GPYIASQSVK-----KVIEINPTLLGTMAGGAADCSFWERELAMQCRLYELRNGELISVA 116
Query: 172 HAANLLVNMVRKYRTGNHSSKIPNGLSFGTLMAAYDEILGPQLYMLDNTGLLIEGTKFCV 231
A+ +L N+V Y+ GLS GT++ +D+ GP L+ +DN G + G F
Sbjct: 117 AASKILANIVWNYKG--------MGLSMGTMICGWDKK-GPGLFYVDNDGTRLHGNMFSC 167
Query: 232 GSGAEYAQAILDTDYRPDLSEEEAYALATSAIYHACRRDIHSGGCVRLYKINGQGWQQVL 291
GSG+ YA +LD ++ DL++EEA L AIYHA RD +SGG + LY + GW+++
Sbjct: 168 GSGSTYAYGVLDAGFKWDLNDEEAQDLGRRAIYHATFRDAYSGGAINLYHMQKDGWKKIS 227
Query: 292 SRDVKDIY 299
+ D D++
Sbjct: 228 ADDCFDLH 235
Score = 44.2 bits (104), Expect = 3e-05
Identities = 21/37 (56%), Positives = 25/37 (67%)
Query: 2 FITGTTTLGFRYPEGIILATDSRATANDLIVSQKLNK 38
F GTTTL F+Y GII+A DS+ATA I SQ + K
Sbjct: 36 FAHGTTTLAFKYGGGIIIAVDSKATAGPYIASQSVKK 72
>gnl|CDD|238887 cd01906, proteasome_protease_HslV, proteasome_protease_HslV. This
group contains the eukaryotic proteosome alpha and beta
subunits and the prokaryotic protease hslV subunit.
Proteasomes are large multimeric self-compartmentalizing
proteases, involved in the clearance of misfolded
proteins, the breakdown of regulatory proteins, and the
processing of proteins such as the preparation of
peptides for immune presentation. Two main proteasomal
types are distinguished by their different tertiary
structures: the eukaryotic/archeal 20S proteasome and
the prokaryotic proteasome-like heat shock protein
encoded by heat shock locus V, hslV. The proteasome
core particle is a highly conserved cylindrical
structure made up of non-identical subunits that have
their active sites on the inner walls of a large central
cavity. The proteasome subunits of bacteria, archaea,
and eukaryotes all share a conserved Ntn (N terminal
nucleophile) hydrolase fold and a catalytic mechanism
involving an N-terminal nucleophilic threonine that is
exposed by post-translational processing of an inactive
propeptide.
Length = 182
Score = 134 bits (341), Expect = 8e-39
Identities = 54/155 (34%), Positives = 79/155 (50%), Gaps = 6/155 (3%)
Query: 128 VIPVSSSILCTLAGNAADCVYWLHSLAKECKGYECKYRTGMTIRHAANLLVNMVRKYRTG 187
+ + I C AG AAD + L KE + Y +Y + + A LL N++ +Y
Sbjct: 34 IFKIDDHIGCAFAGLAADAQTLVERLRKEAQLYRLRYGEPIPVEALAKLLANLLYEYTQS 93
Query: 188 NHSSKIPNGLSFGTLMAAYDEILGPQLYMLDNTGLLIEGTKFCVGSGAEYAQAILDTDYR 247
L L+A DE GPQLY +D +G IE +GSG++YA IL+ Y+
Sbjct: 94 L------RPLGVSLLVAGVDEEGGPQLYSVDPSGSYIEYKATAIGSGSQYALGILEKLYK 147
Query: 248 PDLSEEEAYALATSAIYHACRRDIHSGGCVRLYKI 282
PD++ EEA LA A+ A RD++SGG + + I
Sbjct: 148 PDMTLEEAIELALKALKSALERDLYSGGNIEVAVI 182
Score = 40.6 bits (96), Expect = 3e-04
Identities = 12/33 (36%), Positives = 20/33 (60%)
Query: 6 TTTLGFRYPEGIILATDSRATANDLIVSQKLNK 38
TT +G + +G++LA D R T+ L+ S + K
Sbjct: 1 TTIVGIKGKDGVVLAADKRVTSGLLVASSTVEK 33
>gnl|CDD|215805 pfam00227, Proteasome, Proteasome subunit. The proteasome is a
multisubunit structure that degrades proteins. Protein
degradation is an essential component of regulation
because proteins can become misfolded, damaged, or
unnecessary. Proteasomes and their homologues vary
greatly in complexity: from HslV (heat shock locus v),
which is encoded by 1 gene in bacteria, to the
eukaryotic 20S proteasome, which is encoded by more than
14 genes. Recently evidence of two novel groups of
bacterial proteasomes was proposed. The first is Anbu,
which is sparsely distributed among cyanobacteria and
proteobacteria. The second is call beta-proteobacteria
proteasome homologue (BPH).
Length = 188
Score = 120 bits (303), Expect = 4e-33
Identities = 49/173 (28%), Positives = 76/173 (43%), Gaps = 14/173 (8%)
Query: 115 SQSSTVPHNTSFQ-VIPVSSSILCTLAGNAADCVYWLHSLAKECKGYECKYRTGMTI--- 170
++ S + + + + + I AG AAD + E + Y +Y +++
Sbjct: 25 TRGSKLLSKDTVEKIFKIDDHIGMAFAGLAADAQTLVDYARAEAQLYRLRYGRPISVELA 84
Query: 171 -RHAANLLVNMVRKYRTGNHSSKIPNGLSFGTLMAAYDEILGPQLYMLDNTGLLIEGTKF 229
R A L R L+A YDE GP LY +D +G +IE
Sbjct: 85 KRIADKLQAYTQYSGR---------RPYGVSLLIAGYDEDGGPHLYSIDPSGSVIEYKAT 135
Query: 230 CVGSGAEYAQAILDTDYRPDLSEEEAYALATSAIYHACRRDIHSGGCVRLYKI 282
+GSG++YA L+ Y+PD++ EEA LA A+ A RD SGG + + I
Sbjct: 136 AIGSGSQYAYGFLEKLYKPDMTLEEAVELAVKALKEAIERDALSGGNIEVAVI 188
Score = 43.3 bits (103), Expect = 3e-05
Identities = 13/32 (40%), Positives = 21/32 (65%)
Query: 4 TGTTTLGFRYPEGIILATDSRATANDLIVSQK 35
TGTT +G + +G++LA D RAT ++S+
Sbjct: 3 TGTTIVGIKGKDGVVLAADKRATRGSKLLSKD 34
>gnl|CDD|223711 COG0638, PRE1, 20S proteasome, alpha and beta subunits
[Posttranslational modification, protein turnover,
chaperones].
Length = 236
Score = 109 bits (274), Expect = 2e-28
Identities = 50/175 (28%), Positives = 85/175 (48%), Gaps = 8/175 (4%)
Query: 128 VIPVSSSILCTLAGNAADCVYWLHSLAKECKGYECKYRTGMTIRHAANLLVNMVRKYRTG 187
+ + I +AG AAD + E + Y +Y +++ A LL N++++Y
Sbjct: 64 IFKIDDHIGMAIAGLAADAQVLVRYARAEAQLYRLRYGEPISVEALAKLLSNILQEYTQS 123
Query: 188 NHSSKIPNGLSFGTLMAAYDEILGPQLYMLDNTGLLIEGTKFCVGSGAEYAQAILDTDYR 247
L+A D+ GP+LY D +G E +GSG+++A L+ +YR
Sbjct: 124 ------GRPYGVSLLVAGVDDG-GPRLYSTDPSGSYNEYKATAIGSGSQFAYGFLEKEYR 176
Query: 248 PDLSEEEAYALATSAIYHACRRDIHSGGCVRLYKI-NGQGWQQVLSRDVKDIYND 301
DLS EEA LA A+ A RD SGG + + I +G++++ ++K + +D
Sbjct: 177 EDLSLEEAIELAVKALRAAIERDAASGGGIEVAVITKDEGFRKLDGEEIKKLLDD 231
Score = 44.6 bits (106), Expect = 2e-05
Identities = 16/38 (42%), Positives = 24/38 (63%)
Query: 4 TGTTTLGFRYPEGIILATDSRATANDLIVSQKLNKFCQ 41
GTTT+G + +G++LA D RAT+ LI S + K +
Sbjct: 29 GGTTTVGIKGKDGVVLAADKRATSGLLIASSNVEKIFK 66
>gnl|CDD|238884 cd01901, Ntn_hydrolase, The Ntn hydrolases (N-terminal nucleophile)
are a diverse superfamily of of enzymes that are
activated autocatalytically via an N-terminally lcated
nucleophilic amino acid. N-terminal nucleophile (NTN-)
hydrolase superfamily, which contains a four-layered
alpha, beta, beta, alpha core structure. This family of
hydrolases includes penicillin acylase, the 20S
proteasome alpha and beta subunits, and glutamate
synthase. The mechanism of activation of these proteins
is conserved, although they differ in their substrate
specificities. All known members catalyze the hydrolysis
of amide bonds in either proteins or small molecules,
and each one of them is synthesized as a preprotein. For
each, an autocatalytic endoproteolytic process generates
a new N-terminal residue. This mature N-terminal residue
is central to catalysis and acts as both a polarizing
base and a nucleophile during the reaction. The
N-terminal amino group acts as the proton acceptor and
activates either the nucleophilic hydroxyl in a Ser or
Thr residue or the nucleophilic thiol in a Cys residue.
The position of the N-terminal nucleophile in the active
site and the mechanism of catalysis are conserved in
this family, despite considerable variation in the
protein sequences.
Length = 164
Score = 93.2 bits (232), Expect = 3e-23
Identities = 39/153 (25%), Positives = 67/153 (43%), Gaps = 9/153 (5%)
Query: 114 FSQSSTVPHNTSFQVIPVSSSILCTLAGNAADCVYWLHSLAKECKGYECKYRTGMTIRHA 173
S V + ++ I LAG AAD + L + + Y +Y +++
Sbjct: 20 LSSGLPVAGSPVIKIGKNEDGIAWGLAGLAADAQTLVRRLREALQLYRLRYGEPISVVAL 79
Query: 174 ANLLVNMVRKYRTGNHSSKIPNGLSFGTLMAAYDEILGPQLYMLDNTGLLIEGTKFCV-G 232
A L +++ Y G ++A DE G LY +D +G +IE G
Sbjct: 80 AKELAKLLQVYTQGRP-------FGVNLIVAGVDE-GGGNLYYIDPSGPVIENPGAVATG 131
Query: 233 SGAEYAQAILDTDYRPDLSEEEAYALATSAIYH 265
S ++ A+++L+ Y+PD++ EEA LA A+
Sbjct: 132 SRSQRAKSLLEKLYKPDMTLEEAVELALKALKS 164
Score = 31.6 bits (72), Expect = 0.25
Identities = 7/36 (19%), Positives = 18/36 (50%)
Query: 6 TTTLGFRYPEGIILATDSRATANDLIVSQKLNKFCQ 41
+T++ + G++LA D R ++ + + K +
Sbjct: 1 STSVAIKGKGGVVLAADKRLSSGLPVAGSPVIKIGK 36
>gnl|CDD|239733 cd03764, proteasome_beta_archeal, Archeal proteasome, beta subunit.
The 20S proteasome, multisubunit proteolytic complex, is
the central enzyme for non-lysosomal protein degradation
in both the cytosol and the nucleus. It is composed of
28 subunits arranged as four homoheptameric rings that
stack on top of one another forming an elongated
alpha-beta-beta-alpha cylinder with a central cavity.
The proteasome alpha and beta subunits are both members
of the N-terminal nucleophile (Ntn)-hydrolase
superfamily. Their N-terminal threonine residues are
exposed as a nucleophile in peptide bond hydrolysis.
Mammals have 7 alpha and 7 beta proteasome subunits
while archaea have one of each.
Length = 188
Score = 93.5 bits (233), Expect = 6e-23
Identities = 49/163 (30%), Positives = 79/163 (48%), Gaps = 9/163 (5%)
Query: 128 VIPVSSSILCTLAGNAADCVYWLHSLAKECKGYECKYRTGMTIRHAANLLVNMVRKYRTG 187
+ + I T+AG+ D + L E + YE + M+I+ A LL N++ +
Sbjct: 34 IFQIDDKIAMTIAGSVGDAQSLVRILKAEARLYELRRGRPMSIKALATLLSNILNSSKYF 93
Query: 188 NHSSKIPNGLSFGTLMAAYDEILGPQLYMLDNTGLLIEGTKFCVGSGAEYAQAILDTDYR 247
+ ++ L+ DE GP LY LD G +IE GSG+ YA +L+ +Y+
Sbjct: 94 PYIVQL--------LIGGVDEE-GPHLYSLDPLGSIIEDKYTATGSGSPYAYGVLEDEYK 144
Query: 248 PDLSEEEAYALATSAIYHACRRDIHSGGCVRLYKINGQGWQQV 290
D++ EEA LA AI A RD SG + + I G++++
Sbjct: 145 EDMTVEEAKKLAIRAIKSAIERDSASGDGIDVVVITKDGYKEL 187
Score = 38.0 bits (89), Expect = 0.002
Identities = 13/33 (39%), Positives = 21/33 (63%)
Query: 6 TTTLGFRYPEGIILATDSRATANDLIVSQKLNK 38
TTT+G +G++LA D RA+ + I S+ + K
Sbjct: 1 TTTVGIVCKDGVVLAADKRASMGNFIASKNVKK 33
>gnl|CDD|234287 TIGR03634, arc_protsome_B, proteasome endopeptidase complex,
archaeal, beta subunit. This protein family describes
the archaeal proteasome beta subunit, homologous to both
the alpha subunit and to the alpha and beta subunits of
eukaryotic proteasome subunits. This family is universal
in the first 29 complete archaeal genomes but
occasionally is duplicated [Protein fate, Degradation of
proteins, peptides, and glycopeptides].
Length = 185
Score = 91.1 bits (227), Expect = 4e-22
Identities = 52/159 (32%), Positives = 74/159 (46%), Gaps = 9/159 (5%)
Query: 128 VIPVSSSILCTLAGNAADCVYWLHSLAKECKGYECKYRTGMTIRHAANLLVNMVRKYRTG 187
V + I T+AG+ D + L E K YE + M+++ A LL N++ R
Sbjct: 35 VFQIDDYIAMTIAGSVGDAQSLVRILKAEAKLYELRRGRPMSVKALATLLSNILNSNRFF 94
Query: 188 NHSSKIPNGLSFGTLMAAYDEILGPQLYMLDNTGLLIEGTKFCVGSGAEYAQAILDTDYR 247
++ L+ DE GP LY LD G +IE GSG+ A +L+ +YR
Sbjct: 95 PFIVQL--------LVGGVDEE-GPHLYSLDPAGGIIEDDYTATGSGSPVAYGVLEDEYR 145
Query: 248 PDLSEEEAYALATSAIYHACRRDIHSGGCVRLYKINGQG 286
D+S EEA LA AI A RD+ SG + + I G
Sbjct: 146 EDMSVEEAKKLAVRAIKSAIERDVASGNGIDVAVITKDG 184
Score = 40.3 bits (95), Expect = 4e-04
Identities = 13/34 (38%), Positives = 22/34 (64%)
Query: 5 GTTTLGFRYPEGIILATDSRATANDLIVSQKLNK 38
GTTT+G + +G++LA D RA+ + + S+ K
Sbjct: 1 GTTTVGIKCKDGVVLAADKRASMGNFVASKNAKK 34
>gnl|CDD|239731 cd03762, proteasome_beta_type_6, proteasome beta type-6 subunit.
The 20S proteasome, multisubunit proteolytic complex, is
the central enzyme of nonlysosomal protein degradation
in both the cytosol and nucleus. It is composed of 28
subunits arranged as four homoheptameric rings that
stack on top of one another forming an elongated
alpha-beta-beta-alpha cylinder with a central cavity.
The proteasome alpha and beta subunits are members of
the N-terminal nucleophile (Ntn)-hydrolase superfamily.
Their N-terminal threonine residues are exposed as a
nucleophile in peptide bond hydrolysis. Mammals have 7
alpha and 7 beta proteasome subunits while archaea have
one of each.
Length = 188
Score = 85.7 bits (213), Expect = 3e-20
Identities = 46/167 (27%), Positives = 74/167 (44%), Gaps = 25/167 (14%)
Query: 128 VIPVSSSILCTLAGNAAD-------CVYWLHSLAKECKGYECKYRTGMTIRHAANLLVNM 180
+ + I C +G+AAD Y+L + + ++ AA+L N+
Sbjct: 34 LTQLHDRIYCCRSGSAADTQAIADYVRYYLDM-------HSIELGEPPLVKTAASLFKNL 86
Query: 181 VRKYRTGNHSSKIPNGLSFGTLMAAYDEILGPQLYMLDNTGLLIEGTKFCV-GSGAEYAQ 239
Y+ LS G ++A +DE G Q+Y + G+LI F + GSG+ Y
Sbjct: 87 CYNYK---------EMLSAGIIVAGWDEQNGGQVYSIPLGGMLIRQ-PFAIGGSGSTYIY 136
Query: 240 AILDTDYRPDLSEEEAYALATSAIYHACRRDIHSGGCVRLYKINGQG 286
+D +Y+P ++ EE +A+ A RD SGG +RL I G
Sbjct: 137 GYVDANYKPGMTLEECIKFVKNALSLAMSRDGSSGGVIRLVIITKDG 183
Score = 31.4 bits (72), Expect = 0.33
Identities = 10/36 (27%), Positives = 18/36 (50%)
Query: 6 TTTLGFRYPEGIILATDSRATANDLIVSQKLNKFCQ 41
TT + Y G++L DSR + + ++ +K Q
Sbjct: 1 TTIIAVEYDGGVVLGADSRTSTGSYVANRVTDKLTQ 36
>gnl|CDD|239727 cd03758, proteasome_beta_type_2, proteasome beta type-2 subunit.
The 20S proteasome, multisubunit proteolytic complex, is
the central enzyme of nonlysosomal protein degradation
in both the cytosol and nucleus. It is composed of 28
subunits arranged as four homoheptameric rings that
stack on top of one another forming an elongated
alpha-beta-beta-alpha cylinder with a central cavity.
The proteasome alpha and beta subunits are members of
the N-terminal nucleophile (Ntn)-hydrolase superfamily.
Their N-terminal threonine residues are exposed as a
nucleophile in peptide bond hydrolysis.Mammals have 7
alpha and 7 beta proteasome subunits while archaea have
one of each.
Length = 193
Score = 63.8 bits (156), Expect = 3e-12
Identities = 39/131 (29%), Positives = 63/131 (48%), Gaps = 6/131 (4%)
Query: 128 VIPVSSSILCTLAGNAADCVYWLHSLAKECKGYECKYRTGMTIRHAANLLVNMVRKYRTG 187
+ +S L +G A D + + + K + Y K R G + A N R+
Sbjct: 35 IYKLSDHKLMACSGEAGDRLQFAEYIQKNIQLY--KMRNGYELSPKA--AANFTRRELAE 90
Query: 188 NHSSKIPNGLSFGTLMAAYDEILGPQLYMLDNTGLLIEGTKFCVGSGAEYAQAILDTDYR 247
+ S+ P ++ L+A YD++ GP LY +D G L++ G GA + +ILD Y+
Sbjct: 91 SLRSRTPYQVNL--LLAGYDKVEGPSLYYIDYLGTLVKVPYAAHGYGAYFCLSILDRYYK 148
Query: 248 PDLSEEEAYAL 258
PD++ EEA L
Sbjct: 149 PDMTVEEALEL 159
>gnl|CDD|238892 cd01911, proteasome_alpha, proteasome alpha subunit. The 20S
proteasome, multisubunit proteolytic complex, is the
central enzyme of nonlysosomal protein degradation in
both the cytosol and nucleus. It is composed of 28
subunits arranged as four homoheptameric rings that
stack on top of one another forming an elongated
alpha-beta-beta-alpha cylinder with a central cavity.
The proteasome alpha and beta subunits are members of
the N-terminal nucleophile (Ntn)-hydrolase superfamily.
Their N-terminal threonine residues are exposed as a
nucleophile in peptide bond hydrolysis. Mammals have 7
different alpha and 10 different beta proteasome subunit
genes while archaea have one of each.
Length = 209
Score = 62.8 bits (154), Expect = 1e-11
Identities = 39/143 (27%), Positives = 61/143 (42%), Gaps = 12/143 (8%)
Query: 128 VIPVSSSILCTLAGNAADCVYWLHSLAK----ECKGYECKYRTGMTIRHAANLLVNMVRK 183
+ + I C +AG AD L E + Y Y + + + ++ +
Sbjct: 60 IFKIDDHIGCAVAGLTADA----RVLVNRARVEAQNYRYTYGEPIPVEVLVKRIADLAQV 115
Query: 184 YRTGNHSSKIPNGLSFGTLMAAYDEILGPQLYMLDNTGLLIEGTKFCVGSGAEYAQAILD 243
Y + P G+S L+A YDE GPQLY D +G +G G++ A+ L+
Sbjct: 116 Y--TQYGGVRPFGVSL--LIAGYDEEGGPQLYQTDPSGTYFGYKATAIGKGSQEAKTFLE 171
Query: 244 TDYRPDLSEEEAYALATSAIYHA 266
Y+ DL+ EEA LA A+
Sbjct: 172 KRYKKDLTLEEAIKLALKALKEV 194
>gnl|CDD|239722 cd03753, proteasome_alpha_type_5, proteasome_alpha_type_5. The 20S
proteasome, multisubunit proteolytic complex, is the
central enzyme of nonlysosomal protein degradation in
both the cytosol and nucleus. It is composed of 28
subunits arranged as four homoheptameric rings that
stack on top of one another forming an elongated
alpha-beta-beta-alpha cylinder with a central cavity.
The proteasome alpha and beta subunits are members of
the N-terminal nucleophile (Ntn)-hydrolase superfamily.
Their N-terminal threonine residues are exposed as a
nucleophile in peptide bond hydrolysis. Mammals have 7
alpha and 7 beta proteasome subunits while archaea have
one of each.
Length = 213
Score = 58.1 bits (141), Expect = 5e-10
Identities = 40/147 (27%), Positives = 67/147 (45%), Gaps = 7/147 (4%)
Query: 117 SSTVPHNTSFQVI-PVSSSILCTLAGNAADCVYWLHSLAKECKGYECKYRTGMTIRHAAN 175
+S + +S + I + I C ++G AD + E + + Y MT+
Sbjct: 48 TSPLMEPSSVEKIMEIDDHIGCAMSGLIADARTLIDHARVEAQNHRFTYNEPMTVESVTQ 107
Query: 176 LLVNMVRKYRTGNHSSKI---PNGLSFGTLMAAYDEILGPQLYMLDNTGLLIEGTKFCVG 232
+ ++ ++ G+ K P G++ L+A DE GPQL+ D +G +G
Sbjct: 108 AVSDLALQFGEGDDGKKAMSRPFGVAL--LIAGVDE-NGPQLFHTDPSGTFTRCDAKAIG 164
Query: 233 SGAEYAQAILDTDYRPDLSEEEAYALA 259
SG+E AQ+ L Y D++ EEA LA
Sbjct: 165 SGSEGAQSSLQEKYHKDMTLEEAEKLA 191
Score = 28.5 bits (64), Expect = 4.1
Identities = 11/34 (32%), Positives = 20/34 (58%), Gaps = 1/34 (2%)
Query: 5 GTTTLGFRYPEGIILATDSRATANDLIVSQKLNK 38
G+T +G + EG++LA + R T+ L+ + K
Sbjct: 27 GSTAIGIKTKEGVVLAVEKRITSP-LMEPSSVEK 59
>gnl|CDD|163402 TIGR03690, 20S_bact_beta, proteasome, beta subunit, bacterial type.
Members of this family are the beta subunit of the 20S
proteasome as found in Actinobacteria such as
Mycobacterium, Rhodococcus, and Streptomyces. In
Streptomyces, maturation during proteasome assembly was
shown to remove a 53-amino acid propeptide. Most of the
length of the propeptide is not included in this model
[Protein fate, Degradation of proteins, peptides, and
glycopeptides].
Length = 219
Score = 53.6 bits (129), Expect = 2e-08
Identities = 45/139 (32%), Positives = 67/139 (48%), Gaps = 7/139 (5%)
Query: 139 LAGNAADCVYWLHSLAKECKGYECKYRTGMTIRHAANLLVNMVRKYRTGNHSSKIPNGLS 198
+AG A + + E + YE +T+ AN L MVR GN + + GL+
Sbjct: 47 IAGTAGLAIELVRLFQVELEHYEKIEGVPLTLDGKANRLAAMVR----GNLPAAM-QGLA 101
Query: 199 FGTLMAAYDEILGP-QLYMLDNTGLLIEGTKF-CVGSGAEYAQAILDTDYRPDLSEEEAY 256
L+A YD G +++ D TG E + VGSG+ +A+ L Y PDL E++A
Sbjct: 102 VVPLLAGYDLDAGAGRIFSYDVTGGRYEERGYHAVGSGSVFAKGALKKLYSPDLDEDDAL 161
Query: 257 ALATSAIYHACRRDIHSGG 275
+A A+Y A D +GG
Sbjct: 162 RVAVEALYDAADDDSATGG 180
Score = 35.1 bits (81), Expect = 0.024
Identities = 14/34 (41%), Positives = 22/34 (64%)
Query: 5 GTTTLGFRYPEGIILATDSRATANDLIVSQKLNK 38
GTT + YP G+++A D RAT ++I S+ + K
Sbjct: 2 GTTIVALTYPGGVLMAGDRRATQGNMIASRDVEK 35
>gnl|CDD|239725 cd03756, proteasome_alpha_archeal, proteasome_alpha_archeal. The
20S proteasome, multisubunit proteolytic complex, is the
central enzyme of nonlysosomal protein degradation in
both the cytosol and nucleus. It is composed of 28
subunits arranged as four homoheptameric rings that
stack on top of one another forming an elongated
alpha-beta-beta-alpha cylinder with a central cavity.
The proteasome alpha and beta subunits are members of
the N-terminal nucleophile (Ntn)-hydrolase superfamily.
Their N-terminal threonine residues are exposed as a
nucleophile in peptide bond hydrolysis. Mammals have 7
alpha and 7 beta proteasome subunits while archaea have
one of each.
Length = 211
Score = 50.4 bits (121), Expect = 2e-07
Identities = 26/70 (37%), Positives = 38/70 (54%), Gaps = 3/70 (4%)
Query: 199 FGT--LMAAYDEILGPQLYMLDNTGLLIEGTKFCVGSGAEYAQAILDTDYRPDLSEEEAY 256
FG L+A D+ GP+L+ D +G E +GSG + L+ +Y+ D+S EEA
Sbjct: 126 FGVALLIAGVDDG-GPRLFETDPSGAYNEYKATAIGSGRQAVTEFLEKEYKEDMSLEEAI 184
Query: 257 ALATSAIYHA 266
LA A+Y A
Sbjct: 185 ELALKALYAA 194
Score = 31.1 bits (71), Expect = 0.48
Identities = 12/22 (54%), Positives = 15/22 (68%)
Query: 5 GTTTLGFRYPEGIILATDSRAT 26
GTT LG + EG++LA D R T
Sbjct: 28 GTTALGIKCKEGVVLAVDKRIT 49
>gnl|CDD|239726 cd03757, proteasome_beta_type_1, proteasome beta type-1 subunit.
The 20S proteasome, multisubunit proteolytic complex, is
the central enzyme of nonlysosomal protein degradation
in both the cytosol and nucleus. It is composed of 28
subunits arranged as four homoheptameric rings that
stack on top of one another forming an elongated
alpha-beta-beta-alpha cylinder with a central cavity.
The proteasome alpha and beta subunits are members of
the N-terminal nucleophile (Ntn)-hydrolase superfamily.
Their N-terminal threonine residues are exposed as a
nucleophile in peptide bond hydrolysis. Mammals have 7
alpha and 7 beta proteasome subunits while archaea have
one of each.
Length = 212
Score = 48.8 bits (117), Expect = 6e-07
Identities = 40/181 (22%), Positives = 63/181 (34%), Gaps = 29/181 (16%)
Query: 122 HNTSFQ--VIPVSSSILCTLAGNAADCVYWLHSLAKECKGYECKYRTGMTIRHAANLLVN 179
+ + ++ + +G AD + L K Y+ + M+ A LL
Sbjct: 34 ILSRDSPKIFKLTDKCVLGSSGFQADILALTKRLKARIKMYKYSHNKEMSTEAIAQLLST 93
Query: 180 MV--RK---YRTGNHSSKIPNGLSFGTLMAAYDEILGPQLYMLDNTGLLIEGTKFCVGSG 234
++ R+ Y N ++A DE +Y D G T GS
Sbjct: 94 ILYSRRFFPYYVFN-------------ILAGIDEEGKGVVYSYDPVGSYERETYSAGGSA 140
Query: 235 AEYAQAILD---------TDYRPDLSEEEAYALATSAIYHACRRDIHSGGCVRLYKINGQ 285
+ Q +LD R LS EEA +L A A RDI++G + + I
Sbjct: 141 SSLIQPLLDNQVGRKNQNNVERTPLSLEEAVSLVKDAFTSAAERDIYTGDSLEIVIITKD 200
Query: 286 G 286
G
Sbjct: 201 G 201
>gnl|CDD|239721 cd03752, proteasome_alpha_type_4, proteasome_alpha_type_4. The 20S
proteasome, multisubunit proteolytic complex, is the
central enzyme of nonlysosomal protein degradation in
both the cytosol and nucleus. It is composed of 28
subunits arranged as four homoheptameric rings that
stack on top of one another forming an elongated
alpha-beta-beta-alpha cylinder with a central cavity.
The proteasome alpha and beta subunits are members of
the N-terminal nucleophile (Ntn)-hydrolase superfamily.
Their N-terminal threonine residues are exposed as a
nucleophile in peptide bond hydrolysis. Mammals have 7
alpha and 7 beta proteasome subunits while archaea have
one of each.
Length = 213
Score = 48.9 bits (117), Expect = 7e-07
Identities = 36/131 (27%), Positives = 58/131 (44%), Gaps = 8/131 (6%)
Query: 131 VSSSILCTLAGNAADCVYWLHSLAKECKGYECKYRTGMTIRHAANLLVNMV--RKYRTGN 188
+ I C +AG +D ++ + Y Y+ + LV + K
Sbjct: 66 IDDHIACAVAGITSDANILINYARLIAQRYLYSYQEPI----PVEQLVQRLCDIKQGYTQ 121
Query: 189 HSSKIPNGLSFGTLMAAYDEILGPQLYMLDNTGLLIEGTKFCVGSGAEYAQAILDTDYRP 248
+ P G+SF L A +D+ G QLY D +G +G+ + AQ++L DY+
Sbjct: 122 YGGLRPFGVSF--LYAGWDKHYGFQLYQSDPSGNYSGWKATAIGNNNQAAQSLLKQDYKD 179
Query: 249 DLSEEEAYALA 259
D++ EEA ALA
Sbjct: 180 DMTLEEALALA 190
>gnl|CDD|239720 cd03751, proteasome_alpha_type_3, proteasome_alpha_type_3. The 20S
proteasome, multisubunit proteolytic complex, is the
central enzyme of nonlysosomal protein degradation in
both the cytosol and nucleus. It is composed of 28
subunits arranged as four homoheptameric rings that
stack on top of one another forming an elongated
alpha-beta-beta-alpha cylinder with a central cavity.
The proteasome alpha and beta subunits are members of
the N-terminal nucleophile (Ntn)-hydrolase superfamily.
Their N-terminal threonine residues are exposed as a
nucleophile in peptide bond hydrolysis. Mammals have 7
alpha and 7 beta proteasome subunits while archaea have
one of each.
Length = 212
Score = 48.0 bits (115), Expect = 1e-06
Identities = 39/142 (27%), Positives = 64/142 (45%), Gaps = 8/142 (5%)
Query: 131 VSSSILCTLAGNAADCVYWLHSLAK-ECKGYECKYRTGMTIRHAANLLVNMVRKYRTGNH 189
V I +AG AD + L S A+ E + Y Y T + ++ A+ + + Y +
Sbjct: 66 VDRHIGIAVAGLLADGRH-LVSRAREEAENYRDNYGTPIPVKVLADRVAMYMHAYTL--Y 122
Query: 190 SSKIPNGLSFGTLMAAYDEILGPQLYMLDNTGLLIEGTKFCVGSGAEYAQAILDTDYRPD 249
SS P G S L+ YD GPQLYM++ +G+ +G G + A+ L+ +
Sbjct: 123 SSVRPFGCSV--LLGGYDSD-GPQLYMIEPSGVSYGYFGCAIGKGKQAAKTELEKLKFSE 179
Query: 250 LSEEEAYALATSAIYHACRRDI 271
L+ EA + I + +I
Sbjct: 180 LTCREA-VKEAAKIIYIVHDEI 200
>gnl|CDD|235192 PRK03996, PRK03996, proteasome subunit alpha; Provisional.
Length = 241
Score = 47.9 bits (115), Expect = 2e-06
Identities = 25/70 (35%), Positives = 38/70 (54%), Gaps = 3/70 (4%)
Query: 199 FGT--LMAAYDEILGPQLYMLDNTGLLIEGTKFCVGSGAEYAQAILDTDYRPDLSEEEAY 256
FG L+A D+ GP+L+ D +G +E +G+G + L+ +Y+ DLS EEA
Sbjct: 134 FGVALLIAGVDDG-GPRLFETDPSGAYLEYKATAIGAGRDTVMEFLEKNYKEDLSLEEAI 192
Query: 257 ALATSAIYHA 266
LA A+ A
Sbjct: 193 ELALKALAKA 202
Score = 31.0 bits (71), Expect = 0.59
Identities = 10/22 (45%), Positives = 15/22 (68%)
Query: 5 GTTTLGFRYPEGIILATDSRAT 26
GTT +G + +G++LA D R T
Sbjct: 36 GTTAVGVKTKDGVVLAVDKRIT 57
>gnl|CDD|239732 cd03763, proteasome_beta_type_7, proteasome beta type-7 subunit.
The 20S proteasome, multisubunit proteolytic complex, is
the central enzyme of nonlysosomal protein degradation
in both the cytosol and nucleus. It is composed of 28
subunits arranged as four homoheptameric rings that
stack on top of one another forming an elongated
alpha-beta-beta-alpha cylinder with a central cavity.
The proteasome alpha and beta subunits are members of
the N-terminal nucleophile (Ntn)-hydrolase superfamily.
Their N-terminal threonine residues are exposed as a
nucleophile in peptide bond hydrolysis. Mammals have 7
alpha and 7 beta proteasome subunits while archaea have
one of each.
Length = 189
Score = 47.2 bits (113), Expect = 2e-06
Identities = 26/72 (36%), Positives = 37/72 (51%)
Query: 211 GPQLYMLDNTGLLIEGTKFCVGSGAEYAQAILDTDYRPDLSEEEAYALATSAIYHACRRD 270
GP LY + G + +GSG+ A ++L+ Y+PD++EEEA L AI D
Sbjct: 107 GPHLYSIYPHGSTDKLPFVTMGSGSLAAMSVLEDRYKPDMTEEEAKKLVCEAIEAGIFND 166
Query: 271 IHSGGCVRLYKI 282
+ SG V L I
Sbjct: 167 LGSGSNVDLCVI 178
Score = 31.4 bits (72), Expect = 0.36
Identities = 15/47 (31%), Positives = 24/47 (51%), Gaps = 12/47 (25%)
Query: 6 TTTLGFRYPEGIILATDSRATANDLIVSQKLNKFCQSSLGDSCELLH 52
TT +G + +G++L D+RAT IV+ K +CE +H
Sbjct: 1 TTIVGVVFKDGVVLGADTRAT-EGPIVADK-----------NCEKIH 35
>gnl|CDD|163366 TIGR03633, arc_protsome_A, proteasome endopeptidase complex,
archaeal, alpha subunit. This protein family describes
the archaeal proteasome alpha subunit, homologous to
both the beta subunit and to the alpha and beta subunits
of eukaryotic proteasome subunits. This family is
universal in the first 29 complete archaeal genomes but
occasionally is duplicated [Protein fate, Degradation of
proteins, peptides, and glycopeptides].
Length = 224
Score = 46.5 bits (111), Expect = 4e-06
Identities = 27/70 (38%), Positives = 40/70 (57%), Gaps = 3/70 (4%)
Query: 199 FGT--LMAAYDEILGPQLYMLDNTGLLIEGTKFCVGSGAEYAQAILDTDYRPDLSEEEAY 256
FG L+A D+ GP+L+ D +G L+E +G+G + L+ +YR DLS +EA
Sbjct: 127 FGVALLIAGVDDG-GPRLFETDPSGALLEYKATAIGAGRQAVTEFLEKEYREDLSLDEAI 185
Query: 257 ALATSAIYHA 266
LA A+Y A
Sbjct: 186 ELALKALYSA 195
Score = 31.9 bits (73), Expect = 0.31
Identities = 10/22 (45%), Positives = 15/22 (68%)
Query: 5 GTTTLGFRYPEGIILATDSRAT 26
GTT +G + +G++LA D R T
Sbjct: 29 GTTAVGIKTKDGVVLAVDKRIT 50
>gnl|CDD|239728 cd03759, proteasome_beta_type_3, proteasome beta type-3 subunit.
The 20S proteasome, multisubunit proteolytic complex, is
the central enzyme of nonlysosomal protein degradation
in both the cytosol and nucleus. It is composed of 28
subunits arranged as four homoheptameric rings that
stack on top of one another forming an elongated
alpha-beta-beta-alpha cylinder with a central cavity.
The proteasome alpha and beta subunits are members of
the N-terminal nucleophile (Ntn)-hydrolase superfamily.
Their N-terminal threonine residues are exposed as a
nucleophile in peptide bond hydrolysis. Mammals have 7
alpha and 7 beta proteasome subunits while archaea have
one of each.
Length = 195
Score = 44.5 bits (106), Expect = 2e-05
Identities = 38/167 (22%), Positives = 70/167 (41%), Gaps = 15/167 (8%)
Query: 115 SQSSTVPHNTSFQ-VIPVSSSILCTLAGNAADCVYWLHSLAK-ECKGYECKYRTGMTIRH 172
Q TV +T FQ V + + LAG A D V L + Y + + +
Sbjct: 25 VQQQTV--STDFQKVFRIGDRLYIGLAGLATD-VQTLAQKLRFRVNLYRLREEREIKPKT 81
Query: 173 AANLLVNMVRKYRTGNHSSKIPNGLSFGTLMAAYDEILGPQLYMLDNTGLLIEGTKF-CV 231
++L+ +++ + R G + + ++A D P + +D G + F
Sbjct: 82 FSSLISSLLYEKRFGPYFVEP--------VVAGLDPDGKPFICTMDLIGCPSIPSDFVVS 133
Query: 232 GSGAEYAQAILDTDYRPDLSEEEAYALATSAIYHACRRDIHSG-GCV 277
G+ +E + ++ +RPD+ +E + + A+ A RD SG G V
Sbjct: 134 GTASEQLYGMCESLWRPDMEPDELFETISQALLSAVDRDALSGWGAV 180
>gnl|CDD|173491 PTZ00246, PTZ00246, proteasome subunit alpha; Provisional.
Length = 253
Score = 44.5 bits (105), Expect = 3e-05
Identities = 44/149 (29%), Positives = 64/149 (42%), Gaps = 8/149 (5%)
Query: 113 PFSQSSTVPHNTSFQVIPVSSSILCTLAGNAADCVYWLHSLAKECKGYECKYRTGMTIRH 172
P S P + ++ + S I C +AG AD + L +C+ Y +YR
Sbjct: 50 PISSKLLDPGKINEKIYKIDSHIFCAVAGLTADA----NILINQCRLYAQRYRYTYGEPQ 105
Query: 173 AANLLVNMV--RKYRTGNHSSKIPNGLSFGTLMAAYDEILGPQLYMLDNTGLLIEGTKFC 230
LV + K P G+SF L A YDE LG QLY D +G
Sbjct: 106 PVEQLVVQICDLKQSYTQFGGLRPFGVSF--LFAGYDENLGYQLYHTDPSGNYSGWKATA 163
Query: 231 VGSGAEYAQAILDTDYRPDLSEEEAYALA 259
+G + AQ+IL +++ DL+ E+ LA
Sbjct: 164 IGQNNQTAQSILKQEWKEDLTLEQGLLLA 192
>gnl|CDD|239724 cd03755, proteasome_alpha_type_7, proteasome_alpha_type_7. The 20S
proteasome, multisubunit proteolytic complex, is the
central enzyme of nonlysosomal protein degradation in
both the cytosol and nucleus. It is composed of 28
subunits arranged as four homoheptameric rings that
stack on top of one another forming an elongated
alpha-beta-beta-alpha cylinder with a central cavity.
The proteasome alpha and beta subunits are members of
the N-terminal nucleophile (Ntn)-hydrolase superfamily.
Their N-terminal threonine residues are exposed as a
nucleophile in peptide bond hydrolysis. Mammals have 7
alpha and 7 beta proteasome subunits while archaea have
one of each.
Length = 207
Score = 40.4 bits (95), Expect = 4e-04
Identities = 27/141 (19%), Positives = 61/141 (43%), Gaps = 6/141 (4%)
Query: 124 TSFQVIPVSSSILCTLAGNAADCVYWLHSLAKECKGYECKYRTGMTIRHAANLLVNMVRK 183
T ++ + + AG AD ++ EC+ + +T+ + + + ++
Sbjct: 56 TVRKICMLDDHVCLAFAGLTADARVLINRARLECQSHRLTVEDPVTVEYITRYIAGLQQR 115
Query: 184 YRTGNHSSKI-PNGLSFGTLMAAYDEILGPQLYMLDNTGLLIEGTKFCVGSGAEYAQAIL 242
Y S + P G+S TL+ +D P+LY D +G +G ++ + L
Sbjct: 116 Y---TQSGGVRPFGIS--TLIVGFDPDGTPRLYQTDPSGTYSAWKANAIGRNSKTVREFL 170
Query: 243 DTDYRPDLSEEEAYALATSAI 263
+ +Y+ +++ ++ LA A+
Sbjct: 171 EKNYKEEMTRDDTIKLAIKAL 191
>gnl|CDD|239719 cd03750, proteasome_alpha_type_2, proteasome_alpha_type_2. The 20S
proteasome, multisubunit proteolytic complex, is the
central enzyme of nonlysosomal protein degradation in
both the cytosol and nucleus. It is composed of 28
subunits arranged as four homoheptameric rings that
stack on top of one another forming an elongated
alpha-beta-beta-alpha cylinder with a central cavity.
The proteasome alpha and beta subunits are members of
the N-terminal nucleophile (Ntn)-hydrolase superfamily.
Their N-terminal threonine residues are exposed as a
nucleophile in peptide bond hydrolysis. Mammals have 7
alpha and 7 beta proteasome subunits while archaea have
one of each.
Length = 227
Score = 33.4 bits (77), Expect = 0.089
Identities = 33/153 (21%), Positives = 57/153 (37%), Gaps = 17/153 (11%)
Query: 117 SSTVPHNTSFQVIPVSSSILCTLAGNAADCVYWLHSLAKECKGYECKYR----TGMTIRH 172
S + ++ +V ++ I +G D + K + Y Y +R
Sbjct: 49 SPLIDESSVHKVEQITPHIGMVYSGMGPDFRVLVKKARKIAQQYYLVYGEPIPVSQLVRE 108
Query: 173 AANLLVNMVRK--YRTGNHSSKIPNGLSFGTLMAAYDEILGPQLYMLDNTGLLIEGTKFC 230
A+++ + R P G+S L+A +DE GP LY +D +G
Sbjct: 109 IASVMQEYTQSGGVR--------PFGVSL--LIAGWDE-GGPYLYQVDPSGSYFTWKATA 157
Query: 231 VGSGAEYAQAILDTDYRPDLSEEEAYALATSAI 263
+G A+ L+ Y DL E+A A +
Sbjct: 158 IGKNYSNAKTFLEKRYNEDLELEDAIHTAILTL 190
>gnl|CDD|239723 cd03754, proteasome_alpha_type_6, proteasome_alpha_type_6. The 20S
proteasome, multisubunit proteolytic complex, is the
central enzyme of nonlysosomal protein degradation in
both the cytosol and nucleus. It is composed of 28
subunits arranged as four homoheptameric rings that
stack on top of one another forming an elongated
alpha-beta-beta-alpha cylinder with a central cavity.
The proteasome alpha and beta subunits are members of
the N-terminal nucleophile (Ntn)-hydrolase superfamily.
Their N-terminal threonine residues are exposed as a
nucleophile in peptide bond hydrolysis. Mammals have 7
alpha and 7 beta proteasome subunits while archaea have
one of each.
Length = 215
Score = 31.8 bits (73), Expect = 0.30
Identities = 31/115 (26%), Positives = 47/115 (40%), Gaps = 27/115 (23%)
Query: 116 QSSTVPHNTSFQVIPVSSSILCTLAGNAADCVYWLHSLAKECKGY--ECKYRTGMTIRHA 173
STV H + ++ I C + G AD S + + E KY+ G
Sbjct: 55 DPSTVTH-----LFRITDEIGCVMTGMIADS----RSQVQRARYEAAEFKYKYGY----- 100
Query: 174 ANLLVNMVRKYRTGN-------HSSKIPNGLSFGTLMAAYDEILGPQLYMLDNTG 221
+ V+++ K R + H+ P G+S ++ DE LGPQLY D G
Sbjct: 101 -EMPVDVLAK-RIADINQVYTQHAYMRPLGVS--MILIGIDEELGPQLYKCDPAG 151
>gnl|CDD|239729 cd03760, proteasome_beta_type_4, proteasome beta type-4 subunit.
The 20S proteasome, multisubunit proteolytic complex,
is the central enzyme of nonlysosomal protein
degradation in both the cytosol and nucleus. It is
composed of 28 subunits arranged as four homoheptameric
rings that stack on top of one another forming an
elongated alpha-beta-beta-alpha cylinder with a central
cavity. The proteasome alpha and beta subunits are
members of the N-terminal nucleophile (Ntn)-hydrolase
superfamily. Their N-terminal threonine residues are
exposed as a nucleophile in peptide bond
hydrolysis.Mammals have 7 alpha and 7 beta proteasome
subunits while archaea have one of each.
Length = 197
Score = 30.6 bits (70), Expect = 0.67
Identities = 8/22 (36%), Positives = 15/22 (68%)
Query: 4 TGTTTLGFRYPEGIILATDSRA 25
TGT+ + +Y +G+I+A D+
Sbjct: 1 TGTSVIAIKYKDGVIIAADTLG 22
>gnl|CDD|226015 COG3484, COG3484, Predicted proteasome-type protease
[Posttranslational modification, protein turnover,
chaperones].
Length = 255
Score = 30.6 bits (69), Expect = 0.89
Identities = 20/73 (27%), Positives = 31/73 (42%), Gaps = 7/73 (9%)
Query: 208 EILG--PQLYMLDNTGLLIEGTK----FCVGSGAEYAQAILDTDYRPDLSEEEAYALATS 261
+I G P+LY++ G I+ T +G +Y + ILD D EEA A
Sbjct: 119 QIKGEPPRLYLIYPQGNFIQATPETPFLQIGE-TKYGKPILDRTITYDTPLEEAAKCALV 177
Query: 262 AIYHACRRDIHSG 274
+ + +I G
Sbjct: 178 SFDSTLKSNISVG 190
>gnl|CDD|109803 pfam00760, Cucumo_coat, Cucumovirus coat protein.
Length = 205
Score = 29.5 bits (66), Expect = 1.7
Identities = 16/66 (24%), Positives = 29/66 (43%), Gaps = 2/66 (3%)
Query: 23 SRATANDLIVSQKLNKFCQSSLGDSCELLHPVYTGGERCGQSYSQRSHCV--AETQQDHF 80
+ A A ++Q+LN+ ++ L HP + G E+C Y+ S V +T++
Sbjct: 19 TAADAALRALTQQLNRLNKTLAAGRPTLNHPTFVGSEKCRPGYTYTSLDVRPTKTEKGSS 78
Query: 81 LSPPLS 86
L
Sbjct: 79 FGQRLI 84
>gnl|CDD|185297 PRK15399, PRK15399, lysine decarboxylase LdcC; Provisional.
Length = 713
Score = 28.6 bits (64), Expect = 5.4
Identities = 16/50 (32%), Positives = 21/50 (42%), Gaps = 11/50 (22%)
Query: 52 HPVYTG-----GERCGQSYSQRSHCVAETQQDHFLSPPLSQSSQHIISGD 96
HP+Y G GER + ETQ H + SQ+S I G+
Sbjct: 340 HPIYQGKSGMSGER------VPGKVIFETQSTHKMLAAFSQASLIHIKGE 383
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.319 0.135 0.415
Gapped
Lambda K H
0.267 0.0722 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 15,353,180
Number of extensions: 1386106
Number of successful extensions: 1031
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1013
Number of HSP's successfully gapped: 52
Length of query: 312
Length of database: 10,937,602
Length adjustment: 97
Effective length of query: 215
Effective length of database: 6,635,264
Effective search space: 1426581760
Effective search space used: 1426581760
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 59 (26.5 bits)