RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy14210
(312 letters)
>1ryp_L 20S proteasome; multicatalytic proteinase, protein degradation,
antigen processing, hydrolase, protease; 1.90A
{Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 1fnt_L
1vsy_L 1z7q_L 3l5q_P 1g65_K* 1g0u_K* 1jd2_K* 2f16_K*
2fak_K* 2fny_K* 2gpl_K* 2zcy_K* 3bdm_K* 3d29_K* 3dy3_K*
3dy4_K* 3e47_K* 3gpj_K* 3gpt_K* 3gpw_K* ...
Length = 212
Score = 173 bits (440), Expect = 1e-53
Identities = 65/190 (34%), Positives = 106/190 (55%), Gaps = 8/190 (4%)
Query: 115 SQSSTVPHNTSFQVIPVSSSILCTLAGNAADCVYWLHSLAKECKGYECKYRTGMTIRHAA 174
+ + V T +VI ++ +L T+AG AADC +W L +C+ +E + + +++ A+
Sbjct: 21 TAGNWVASQTVKRVIEINPFLLGTMAGGAADCQFWETWLGSQCRLHELREKERISVAAAS 80
Query: 175 NLLVNMVRKYRTGNHSSKIPNGLSFGTLMAAYDEILGPQLYMLDNTGLLIEGTKFCVGSG 234
+L N+V +Y+ GLS GT++ Y GP +Y +D+ G ++G FCVGSG
Sbjct: 81 KILSNLVYQYK--------GAGLSMGTMICGYTRKEGPTIYYVDSDGTRLKGDIFCVGSG 132
Query: 235 AEYAQAILDTDYRPDLSEEEAYALATSAIYHACRRDIHSGGCVRLYKINGQGWQQVLSRD 294
+A +LD++Y+ DLS E+A L +I A RD +SGG V LY + GW + D
Sbjct: 133 QTFAYGVLDSNYKWDLSVEDALYLGKRSILAAAHRDAYSGGSVNLYHVTEDGWIYHGNHD 192
Query: 295 VKDIYNDRKE 304
V +++ KE
Sbjct: 193 VGELFWKVKE 202
Score = 49.5 bits (119), Expect = 2e-07
Identities = 18/33 (54%), Positives = 24/33 (72%)
Query: 6 TTTLGFRYPEGIILATDSRATANDLIVSQKLNK 38
TTTL FR+ GII+A DSRATA + + SQ + +
Sbjct: 1 TTTLAFRFQGGIIVAVDSRATAGNWVASQTVKR 33
>1iru_L 20S proteasome; cell cycle, immune response, proteolysis,
ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4
PDB: 3unb_K* 3une_K 3unf_K* 3unh_K
Length = 204
Score = 171 bits (436), Expect = 5e-53
Identities = 73/193 (37%), Positives = 110/193 (56%), Gaps = 9/193 (4%)
Query: 115 SQSSTVPHNTSFQVIPVSSSILCTLAGNAADCVYWLHSLAKECKGYECKYRTGMTIRHAA 174
+ + + T +VI ++ +L T+AG AADC +W LA++C+ YE + + +++ A+
Sbjct: 21 TAGAYIASQTVKKVIEINPYLLGTMAGGAADCSFWERLLARQCRIYELRNKERISVAAAS 80
Query: 175 NLLVNMVRKYRTGNHSSKIPNGLSFGTLMAAYDEILGPQLYMLDNTGLLIEGTKFCVGSG 234
LL NMV +Y+ GLS GT++ +D+ GP LY +D+ G I G F VGSG
Sbjct: 81 KLLANMVYQYK--------GMGLSMGTMICGWDK-RGPGLYYVDSEGNRISGATFSVGSG 131
Query: 235 AEYAQAILDTDYRPDLSEEEAYALATSAIYHACRRDIHSGGCVRLYKINGQGWQQVLSRD 294
+ YA ++D Y DL E+AY LA AIY A RD +SGG V LY + GW +V S +
Sbjct: 132 SVYAYGVMDRGYSYDLEVEQAYDLARRAIYQATYRDAYSGGAVNLYHVREDGWIRVSSDN 191
Query: 295 VKDIYNDRKEAPP 307
V D++ + P
Sbjct: 192 VADLHEKYSGSTP 204
Score = 49.5 bits (119), Expect = 2e-07
Identities = 18/33 (54%), Positives = 23/33 (69%)
Query: 6 TTTLGFRYPEGIILATDSRATANDLIVSQKLNK 38
TTTL F++ G+I+A DSRATA I SQ + K
Sbjct: 1 TTTLAFKFRHGVIVAADSRATAGAYIASQTVKK 33
>3nzj_K Proteasome component PRE2; ubiquitin, protein degradation,
N-terminal nucleophilic HYDR 19S regulatory particle;
HET: TY5 TRO MES; 2.40A {Saccharomyces cerevisiae} PDB:
3nzw_K* 3nzx_K*
Length = 287
Score = 172 bits (438), Expect = 2e-52
Identities = 65/190 (34%), Positives = 106/190 (55%), Gaps = 8/190 (4%)
Query: 115 SQSSTVPHNTSFQVIPVSSSILCTLAGNAADCVYWLHSLAKECKGYECKYRTGMTIRHAA 174
+ + V T +VI ++ +L T+AG AADC +W L +C+ +E + + +++ A+
Sbjct: 96 TAGNWVASQTVKKVIEINPFLLGTMAGGAADCQFWETWLGSQCRLHELREKERISVAAAS 155
Query: 175 NLLVNMVRKYRTGNHSSKIPNGLSFGTLMAAYDEILGPQLYMLDNTGLLIEGTKFCVGSG 234
+L N+V +Y+ GLS GT++ Y GP +Y +D+ G ++G FCVGSG
Sbjct: 156 KILSNLVYQYKGA--------GLSMGTMICGYTRKEGPTIYYVDSDGTRLKGDIFCVGSG 207
Query: 235 AEYAQAILDTDYRPDLSEEEAYALATSAIYHACRRDIHSGGCVRLYKINGQGWQQVLSRD 294
+A +LD++Y+ DLS E+A L +I A RD +SGG V LY + GW + D
Sbjct: 208 QTFAYGVLDSNYKWDLSVEDALYLGKRSILAAAHRDAYSGGSVNLYHVTEDGWIYHGNHD 267
Query: 295 VKDIYNDRKE 304
V +++ KE
Sbjct: 268 VGELFWKVKE 277
Score = 54.0 bits (130), Expect = 1e-08
Identities = 20/35 (57%), Positives = 25/35 (71%)
Query: 4 TGTTTLGFRYPEGIILATDSRATANDLIVSQKLNK 38
GTTTL FR+ GII+A DSRATA + + SQ + K
Sbjct: 74 HGTTTLAFRFQGGIIVAVDSRATAGNWVASQTVKK 108
>3h4p_A Proteasome subunit alpha; core particle, cytoplasm, hydrolase,
protease, threonine protease; 4.10A {Methanocaldococcus
jannaschii}
Length = 264
Score = 170 bits (432), Expect = 3e-52
Identities = 16/184 (8%), Positives = 34/184 (18%), Gaps = 9/184 (4%)
Query: 128 VIPVSSSILCTLAGNAADCVYWLHSLAKECKGYECKYRTGMTIRHAANLLVNMVRKYRTG 187
V +++I V + K AA + +
Sbjct: 35 VRRGTTAIGIACKDGVVLAVDRRITSKLVKIRSIEKIFQIDDHVAAATSGLVADARVL-- 92
Query: 188 NHSSKIPNGLSFGTLMAAYDEILGPQLYMLDNTGLLIEGTKF-CVGSGAEYAQAILDTDY 246
+ + + ML I+ G ++
Sbjct: 93 ------IDRARLEAQIYRLTYGEEISIEMLAKKICDIKQAYTQHGGVRPFGVSLLIAGID 146
Query: 247 RPDLSEEEAYALATSAIYHACRRDIHSGGCVRLYKINGQGWQQVLSRDVKDIYNDRKEAP 306
+ + E Y A + L + + + I K
Sbjct: 147 KNEARLFETDPSGALIEYKATAIGSGRPVVMELLEKEYRDDITLDEGLELAITALTKANE 206
Query: 307 PGGG 310
Sbjct: 207 DIKP 210
Score = 49.2 bits (118), Expect = 4e-07
Identities = 2/33 (6%), Positives = 3/33 (9%)
Query: 6 TTTLGFRYPEGIILATDSRATANDLIVSQKLNK 38
+ T V
Sbjct: 2 SHMQMVPPSAYDRAITVFSPEGRLYQVEYAREA 34
>1yar_H Proteasome beta subunit; proteasome 20S, PA26 proteasome activator
11S, hydrolase-HYD activator complex; 1.90A
{Thermoplasma acidophilum} SCOP: d.153.1.4 PDB: 1ya7_H
1yau_H 3ipm_H 1pma_B 3jrm_H 3c92_H 3c91_H 3jse_H 3jtl_H
Length = 217
Score = 162 bits (412), Expect = 3e-49
Identities = 39/187 (20%), Positives = 76/187 (40%), Gaps = 11/187 (5%)
Query: 115 SQSSTVPHNTSFQVIPVSSSILCTLAGNAADCVYWLHSLAKECKGYECKYRTGMTIRHAA 174
+ + + H ++ + + T+AG D + + E + Y + R M I A
Sbjct: 29 TMENFIMHKNGKKLFQIDTYTGMTIAGLVGDAQVLVRYMKAELELYRLQRRVNMPIEAVA 88
Query: 175 NLLVNMVRKYRTGNHSSKIPNGLSFGTLMAAYDEILGPQLYMLDNTGLLIEGTKFCVGSG 234
LL NM+ + + L+ D P ++ +D G +E GSG
Sbjct: 89 TLLSNMLNQVK--------YMPYMVQLLVGGIDT--APHVFSIDAAGGSVEDIYASTGSG 138
Query: 235 AEYAQAILDTDYRPDLSEEEAYALATSAIYHACRRDIHSGGCVRLYKINGQ-GWQQVLSR 293
+ + +L++ Y ++ +E L AI A +RD SGG + + I + G+ Q+ +
Sbjct: 139 SPFVYGVLESQYSEKMTVDEGVDLVIRAISAAKQRDSASGGMIDVAVITRKDGYVQLPTD 198
Query: 294 DVKDIYN 300
++
Sbjct: 199 QIESRIR 205
Score = 54.2 bits (131), Expect = 6e-09
Identities = 13/35 (37%), Positives = 21/35 (60%)
Query: 4 TGTTTLGFRYPEGIILATDSRATANDLIVSQKLNK 38
TGTTT+G + +I+AT+ R T + I+ + K
Sbjct: 7 TGTTTVGITLKDAVIMATERRVTMENFIMHKNGKK 41
>1iru_H 20S proteasome; cell cycle, immune response, proteolysis,
ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4
PDB: 3unb_N* 3une_N
Length = 205
Score = 161 bits (411), Expect = 3e-49
Identities = 46/196 (23%), Positives = 82/196 (41%), Gaps = 13/196 (6%)
Query: 115 SQSSTVPHNTSFQVIPVSSSILCTLAGNAADCVYWLHSLAKECKGYECKYRTGMTIRHAA 174
+ S + + + ++ P+ I C +G+AAD ++ + + + + AA
Sbjct: 21 TTGSYIANRVTDKLTPIHDRIFCCRSGSAADTQAVADAVTYQLGFHSIELNEPPLVHTAA 80
Query: 175 NLLVNMVRKYRTGNHSSKIPNGLSFGTLMAAYDEILGPQLYMLDNTGLLIEGTKFCVGSG 234
+L M +YR L G ++A +D G Q+Y + G+++ + GSG
Sbjct: 81 SLFKEMCYRYR---------EDLMAGIIIAGWDPQEGGQVYSVPMGGMMVRQSFAIGGSG 131
Query: 235 AEYAQAILDTDYRPDLSEEEAYALATSAIYHACRRDIHSGGCVRLYKINGQGW--QQVLS 292
+ Y +D YR +++EE +A+ A RD SGG +RL I G Q +L
Sbjct: 132 SSYIYGYVDATYREGMTKEECLQFTANALALAMERDGSSGGVIRLAAIAESGVERQVLLG 191
Query: 293 RDVKDIYNDRKEAPPG 308
+ PP
Sbjct: 192 DQIPKF--AVATLPPA 205
Score = 47.2 bits (113), Expect = 1e-06
Identities = 10/33 (30%), Positives = 18/33 (54%)
Query: 6 TTTLGFRYPEGIILATDSRATANDLIVSQKLNK 38
TT + ++ G++L DSR T I ++ +K
Sbjct: 1 TTIMAVQFDGGVVLGADSRTTTGSYIANRVTDK 33
>1j2q_H Proteasome beta subunit; ubiquitin, CP, hydrolase; HET: CIB; 2.83A
{Archaeoglobus fulgidus} SCOP: d.153.1.4
Length = 202
Score = 161 bits (411), Expect = 3e-49
Identities = 45/192 (23%), Positives = 79/192 (41%), Gaps = 10/192 (5%)
Query: 114 FSQSSTVPHNTSFQVIPVSSSILCTLAGNAADCVYWLHSLAKECKGYECKYRTGMTIRHA 173
+ + + + ++ ++ + T AG+ D + + E YE + T+R
Sbjct: 20 ATMGNFIASKAAKKIYQIADRMAMTTAGSVGDAQFLARIIKIEANLYEIRRERKPTVRAI 79
Query: 174 ANLLVNMVRKYRTGNHSSKIPNGLSFGTLMAAYDEILGPQLYMLDNTGLLIEGTKF-CVG 232
A L N++ YR L+ D G +Y +D G IE G
Sbjct: 80 ATLTSNLLNSYR--------YFPYLVQLLIGGIDSE-GKSIYSIDPIGGAIEEKDIVATG 130
Query: 233 SGAEYAQAILDTDYRPDLSEEEAYALATSAIYHACRRDIHSGGCVRLYKINGQGWQQVLS 292
SG+ A +L+ + P++ +EA LA AIY A +RD SG + + KI + Q
Sbjct: 131 SGSLTAYGVLEDRFTPEIGVDEAVELAVRAIYSAMKRDSASGDGIDVVKITEDEFYQYSP 190
Query: 293 RDVKDIYNDRKE 304
+V+ I ++
Sbjct: 191 EEVEQILAKFRK 202
Score = 48.7 bits (117), Expect = 3e-07
Identities = 13/33 (39%), Positives = 21/33 (63%)
Query: 6 TTTLGFRYPEGIILATDSRATANDLIVSQKLNK 38
TTT+G +G+++AT+ RAT + I S+ K
Sbjct: 1 TTTVGLVCKDGVVMATEKRATMGNFIASKAAKK 33
>1ryp_I 20S proteasome; multicatalytic proteinase, protein degradation,
antigen processing, hydrolase, protease; 1.90A
{Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 1g0u_H*
1jd2_H* 1g65_H 1vsy_I 1z7q_I 2f16_H* 2fak_H* 2fny_H*
2gpl_H* 3d29_H* 3dy3_H* 3dy4_H* 3e47_H* 3gpj_H* 3gpt_H*
3gpw_H* 3hye_H* 3l5q_M 3mg0_H* 3mg4_H* ...
Length = 222
Score = 157 bits (400), Expect = 2e-47
Identities = 41/190 (21%), Positives = 74/190 (38%), Gaps = 10/190 (5%)
Query: 115 SQSSTVPHNTSFQVIPVSSSILCTLAGNAADCVYWLHSLAKECKGYECKYRTGMTIRHAA 174
+Q V ++ +S I C AG AAD + + + + A
Sbjct: 21 TQGPIVADKNCAKLHRISPKIWCAGAGTAADTEAVTQLIGSNIELHSLYTSREPRVVSAL 80
Query: 175 NLLVNMVRKYRTGNHSSKIPNGLSFGTLMAAYDEILGPQLYMLDNTGLLIEGTKFCVGSG 234
+L + KY+ + ++A D G L+ + G G +GSG
Sbjct: 81 QMLKQHLFKYQ---------GHIGAYLIVAGVDP-TGSHLFSIHAHGSTDVGYYLSLGSG 130
Query: 235 AEYAQAILDTDYRPDLSEEEAYALATSAIYHACRRDIHSGGCVRLYKINGQGWQQVLSRD 294
+ A A+L++ ++ DL++EEA LA+ AI D+ SG V + + + L
Sbjct: 131 SLAAMAVLESHWKQDLTKEEAIKLASDAIQAGIWNDLGSGSNVDVCVMEIGKDAEYLRNY 190
Query: 295 VKDIYNDRKE 304
+ + K+
Sbjct: 191 LTPNVREEKQ 200
Score = 49.2 bits (118), Expect = 3e-07
Identities = 9/33 (27%), Positives = 20/33 (60%)
Query: 6 TTTLGFRYPEGIILATDSRATANDLIVSQKLNK 38
TT +G ++ G+++A D+R+T ++ + K
Sbjct: 1 TTIVGVKFNNGVVIAADTRSTQGPIVADKNCAK 33
>1ryp_H 20S proteasome; multicatalytic proteinase, protein degradation,
antigen processing, hydrolase, protease; 1.90A
{Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 3nzj_N*
3nzw_N* 3nzx_N* 1vsy_H 3l5q_B 1g65_N* 1fnt_H 1g0u_N*
1jd2_N* 1z7q_H 2f16_N* 2fak_N* 2fny_N* 2gpl_N* 2zcy_N*
3bdm_N* 3d29_N* 3dy3_N* 3dy4_N* 3e47_N* ...
Length = 205
Score = 156 bits (396), Expect = 5e-47
Identities = 35/176 (19%), Positives = 78/176 (44%), Gaps = 10/176 (5%)
Query: 115 SQSSTVPHNTSFQVIPVSSSILCTLAGNAADCVYWLHSLAKECKGYECKYRTGMTIRHAA 174
+ + + + + ++ V I C +G+AAD + + Y +Y T T AA
Sbjct: 30 TTGAYIANRVTDKLTRVHDKIWCCRSGSAADTQAIADIVQYHLELYTSQYGTPSTET-AA 88
Query: 175 NLLVNMVRKYRTGNHSSKIPNGLSFGTLMAAYDEILGPQLYMLDNTGLLIEGTKFCVGSG 234
++ + + + + L+ G ++A YD+ ++Y + G + + GSG
Sbjct: 89 SVFKELCYENK---------DNLTAGIIVAGYDDKNKGEVYTIPLGGSVHKLPYAIAGSG 139
Query: 235 AEYAQAILDTDYRPDLSEEEAYALATSAIYHACRRDIHSGGCVRLYKINGQGWQQV 290
+ + D ++R ++S+EE ++ A + D SGG +R+ + G +++
Sbjct: 140 STFIYGYCDKNFRENMSKEETVDFIKHSLSQAIKWDGSSGGVIRMVVLTAAGVERL 195
Score = 51.8 bits (125), Expect = 4e-08
Identities = 10/35 (28%), Positives = 18/35 (51%)
Query: 4 TGTTTLGFRYPEGIILATDSRATANDLIVSQKLNK 38
G + + + +G+IL DSR T I ++ +K
Sbjct: 8 LGASIMAVTFKDGVILGADSRTTTGAYIANRVTDK 42
>1iru_I 20S proteasome; cell cycle, immune response, proteolysis,
ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4
PDB: 3unb_H* 3une_H
Length = 234
Score = 157 bits (398), Expect = 6e-47
Identities = 43/197 (21%), Positives = 74/197 (37%), Gaps = 13/197 (6%)
Query: 115 SQSSTVPHNTSFQVIPVSSSILCTLAGNAADCVYWLHSLAKECKGYECKYRTGMTIRHAA 174
++ V ++ +S +I C AG AAD ++ + + + A
Sbjct: 21 TEGMVVADKNCSKIHFISPNIYCCGAGTAADTDMTTQLISSNLELHSLSTGRLPRVVTAN 80
Query: 175 NLLVNMVRKYRTGNHSSKIPNGLSFGTLMAAYDEILGPQLYMLDNTGLLIEGTKFCVGSG 234
+L M+ +YR + ++ D GP LY + G + +GSG
Sbjct: 81 RMLKQMLFRYR---------GYIGAALVLGGVDV-TGPHLYSIYPHGSTDKLPYVTMGSG 130
Query: 235 AEYAQAILDTDYRPDLSEEEAYALATSAIYHACRRDIHSGGCVRLYKINGQGWQQVLSRD 294
+ A A+ + +RPD+ EEEA L + AI D+ SG + L I+ +
Sbjct: 131 SLAAMAVFEDKFRPDMEEEEAKNLVSEAIAAGIFNDLGSGSNIDLCVISKNKLDFLRPYT 190
Query: 295 VKDIYNDRKEA---PPG 308
V + R G
Sbjct: 191 VPNKKGTRLGRYRCEKG 207
Score = 49.2 bits (118), Expect = 3e-07
Identities = 12/33 (36%), Positives = 19/33 (57%)
Query: 6 TTTLGFRYPEGIILATDSRATANDLIVSQKLNK 38
TT G Y +GI+L D+RAT ++ + +K
Sbjct: 1 TTIAGVVYKDGIVLGADTRATEGMVVADKNCSK 33
>3nzj_H Proteasome component PUP1; ubiquitin, protein degradation,
N-terminal nucleophilic HYDR 19S regulatory particle;
HET: TY5 TRO MES; 2.40A {Saccharomyces cerevisiae} PDB:
3nzw_H* 3nzx_H*
Length = 261
Score = 157 bits (399), Expect = 1e-46
Identities = 41/190 (21%), Positives = 74/190 (38%), Gaps = 10/190 (5%)
Query: 115 SQSSTVPHNTSFQVIPVSSSILCTLAGNAADCVYWLHSLAKECKGYECKYRTGMTIRHAA 174
+Q V ++ +S I C AG AAD + + + + A
Sbjct: 50 TQGPIVADKNCAKLHRISPKIWCAGAGTAADTEAVTQLIGSNIELHSLYTSREPRVVSAL 109
Query: 175 NLLVNMVRKYRTGNHSSKIPNGLSFGTLMAAYDEILGPQLYMLDNTGLLIEGTKFCVGSG 234
+L + KY+ + ++A D G L+ + G G +GSG
Sbjct: 110 QMLKQHLFKYQ---------GHIGAYLIVAGVDPT-GSHLFSIHAHGSTDVGYYLSLGSG 159
Query: 235 AEYAQAILDTDYRPDLSEEEAYALATSAIYHACRRDIHSGGCVRLYKINGQGWQQVLSRD 294
+ A A+L++ ++ DL++EEA LA+ AI D+ SG V + + + L
Sbjct: 160 SLAAMAVLESHWKQDLTKEEAIKLASDAIQAGIWNDLGSGSNVDVCVMEIGKDAEYLRNY 219
Query: 295 VKDIYNDRKE 304
+ + K+
Sbjct: 220 LTPNVREEKQ 229
Score = 54.3 bits (131), Expect = 1e-08
Identities = 11/35 (31%), Positives = 22/35 (62%)
Query: 4 TGTTTLGFRYPEGIILATDSRATANDLIVSQKLNK 38
TGTT +G ++ G+++A D+R+T ++ + K
Sbjct: 28 TGTTIVGVKFNNGVVIAADTRSTQGPIVADKNCAK 62
>3unf_N Proteasome subunit beta type-9; antigen presentation, drug
development, protein degradation, hydrolase-hydrolase
inhibitor complex; HET: 04C; 2.90A {Mus musculus} PDB:
3unh_N
Length = 199
Score = 153 bits (388), Expect = 7e-46
Identities = 47/190 (24%), Positives = 80/190 (42%), Gaps = 12/190 (6%)
Query: 114 FSQSSTVPHNTSFQVIPVSSSILCTLAGNAADCVYWLHSLAKECKGYECKYRTGMTIRHA 173
S + V + ++ P+ I C L+G+AAD A + + + + + A
Sbjct: 20 VSAGTAVVNRVFDKLSPLHQRIFCALSGSAADAQAIADMAAYQLELHGLELEEPPLVLAA 79
Query: 174 ANLLVNMVRKYRTGNHSSKIPNGLSFGTLMAAYDEILGPQLYMLDNTGLLIEGTKFCVGS 233
AN++ N+ KYR L ++A +D+ G+LI GS
Sbjct: 80 ANVVKNISYKYR---------EDLLAHLIVAGWDQR-EGGQVYGTMGGMLIRQPFTIGGS 129
Query: 234 GAEYAQAILDTDYRPDLSEEEAYALATSAIYHACRRDIHSGGCVRLYKINGQGW--QQVL 291
G+ Y +D Y+P ++ EE T+AI A RD SGG + L I G + +L
Sbjct: 130 GSSYIYGYVDAAYKPGMTPEECRRFTTNAITLAMNRDGSSGGVIYLVTITAAGVDHRVIL 189
Query: 292 SRDVKDIYND 301
++ Y++
Sbjct: 190 GDELPKFYDE 199
Score = 47.6 bits (114), Expect = 1e-06
Identities = 9/33 (27%), Positives = 20/33 (60%)
Query: 6 TTTLGFRYPEGIILATDSRATANDLIVSQKLNK 38
TT + + G+++ +DSR +A +V++ +K
Sbjct: 1 TTIMAVEFDGGVVVGSDSRVSAGTAVVNRVFDK 33
>3unf_H Proteasome subunit beta type-10; antigen presentation, drug
development, protein degradation, hydrolase-hydrolase
inhibitor complex; HET: 04C; 2.90A {Mus musculus} PDB:
3unh_H
Length = 234
Score = 152 bits (386), Expect = 3e-45
Identities = 38/174 (21%), Positives = 66/174 (37%), Gaps = 10/174 (5%)
Query: 115 SQSSTVPHNTSFQVIPVSSSILCTLAGNAADCVYWLHSLAKECKGYECKYRTGMTIRHAA 174
+ S V + ++ ++ I C AG AAD A + + + +
Sbjct: 21 TNDSVVADKSCEKIHFIAPKIYCCGAGVAADTEMTTRMAASKMELHALSTGREPRVATVT 80
Query: 175 NLLVNMVRKYRTGNHSSKIPNGLSFGTLMAAYDEILGPQLYMLDNTGLLIEGTKFCVGSG 234
+L + +Y+ + ++ D GPQLY + G +GSG
Sbjct: 81 RILRQTLFRYQ---------GHVGASLVVGGVDL-NGPQLYEVHPHGSYSRLPFTALGSG 130
Query: 235 AEYAQAILDTDYRPDLSEEEAYALATSAIYHACRRDIHSGGCVRLYKINGQGWQ 288
A A+L+ ++P+++ E A L AI D+ SGG V I G +
Sbjct: 131 QGAAVALLEDRFQPNMTLEAAQELLVEAITAGILSDLGSGGNVDACVITAGGAK 184
Score = 50.3 bits (121), Expect = 2e-07
Identities = 11/33 (33%), Positives = 19/33 (57%)
Query: 6 TTTLGFRYPEGIILATDSRATANDLIVSQKLNK 38
TT G + +G+IL D+RAT + ++ + K
Sbjct: 1 TTIAGLVFRDGVILGADTRATNDSVVADKSCEK 33
>1ryp_K 20S proteasome; multicatalytic proteinase, protein degradation,
antigen processing, hydrolase, protease; 1.90A
{Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 1fnt_K
1g0u_J* 1jd2_J* 1g65_J 1vsy_K 1z7q_K 2f16_J* 2fak_J*
2fny_J* 2gpl_J* 2zcy_J* 3bdm_J* 3d29_J* 3dy3_J* 3dy4_J*
3e47_J* 3gpj_J* 3gpt_J* 3gpw_J* 3hye_J* ...
Length = 198
Score = 149 bits (378), Expect = 2e-44
Identities = 37/183 (20%), Positives = 73/183 (39%), Gaps = 7/183 (3%)
Query: 115 SQSSTVPHNTSFQVIPVSSSILCTLAGNAADCVYWLHSLAKECKGYECKYRTGMTIRHAA 174
++ +V ++ + +S L + AG A D V + + + Y + ++ + +
Sbjct: 22 TRGISVLKDSDDKTRQLSPHTLMSFAGEAGDTVQFAEYIQANIQLYSIREDYELSPQAVS 81
Query: 175 NLLVNMVRKYRTGNHSSKIPNGLSFGTLMAAYDEIL-GPQLYMLDNTGLLIEGTKFCVGS 233
+ + + K S+ P L+ YD+ P+LY +D G +E G
Sbjct: 82 SFVRQELAKSI----RSRRP--YQVNVLIGGYDKKKNKPELYQIDYLGTKVELPYGAHGY 135
Query: 234 GAEYAQAILDTDYRPDLSEEEAYALATSAIYHACRRDIHSGGCVRLYKINGQGWQQVLSR 293
Y ++LD YRPD++ EE L + +R V + ++ G +QV
Sbjct: 136 SGFYTFSLLDHHYRPDMTTEEGLDLLKLCVQELEKRMPMDFKGVIVKIVDKDGIRQVDDF 195
Query: 294 DVK 296
+
Sbjct: 196 QAQ 198
Score = 45.3 bits (108), Expect = 6e-06
Identities = 8/33 (24%), Positives = 14/33 (42%)
Query: 6 TTTLGFRYPEGIILATDSRATANDLIVSQKLNK 38
LG R + +ILA+ T ++ +K
Sbjct: 2 DIILGIRVQDSVILASSKAVTRGISVLKDSDDK 34
>1iru_J 20S proteasome; cell cycle, immune response, proteolysis,
ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4
PDB: 3unb_I* 3une_I 3unf_I* 3unh_I
Length = 205
Score = 149 bits (378), Expect = 3e-44
Identities = 33/162 (20%), Positives = 62/162 (38%), Gaps = 10/162 (6%)
Query: 128 VIPVSSSILCTLAGNAADCVYWLHSLAKECKGYECKYRTGMTIRHAANLLVNMVRKYRTG 187
+ P+ + LAG A D L YE K + +++ N++ + R G
Sbjct: 42 IFPMGDRLYIGLAGLATDVQTVAQRLKFRLNLYELKEGRQIKPYTLMSMVANLLYEKRFG 101
Query: 188 NHSSKIPNGLSFGTLMAAYD-EILGPQLYMLDNTGLLIEGTKFCV-GSGAEYAQAILDTD 245
++A D + P + LD G + F V G+ AE + ++
Sbjct: 102 --------PYYTEPVIAGLDPKTFKPFICSLDLIGCPMVTDDFVVSGTCAEQMYGMCESL 153
Query: 246 YRPDLSEEEAYALATSAIYHACRRDIHSGGCVRLYKINGQGW 287
+ P++ + + + A+ +A RD SG V ++ I
Sbjct: 154 WEPNMDPDHLFETISQAMLNAVDRDAVSGMGVIVHIIEKDKI 195
Score = 49.8 bits (120), Expect = 1e-07
Identities = 7/38 (18%), Positives = 13/38 (34%)
Query: 1 MFITGTTTLGFRYPEGIILATDSRATANDLIVSQKLNK 38
M G + + + +A D R +V+ K
Sbjct: 4 MSYNGGAVMAMKGKNCVAIAADRRFGIQAQLVTTDFQK 41
>1iru_K 20S proteasome; cell cycle, immune response, proteolysis,
ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4
PDB: 3unb_J* 3une_J 3unf_J* 3unh_J
Length = 201
Score = 147 bits (373), Expect = 1e-43
Identities = 40/177 (22%), Positives = 66/177 (37%), Gaps = 8/177 (4%)
Query: 115 SQSSTVPHNTSFQVIPVSSSILCTLAGNAADCVYWLHSLAKECKGYECKYRTGMTIRHAA 174
+ + + ++ +S IL G A D V + + K + Y+ + ++ AA
Sbjct: 22 ASNIVQMKDDHDKMFKMSEKILLLCVGEAGDTVQFAEYIQKNVQLYKMRNGYELSPTAAA 81
Query: 175 NLLVNMV-RKYRTGNHSSKIPNGLSFGTLMAAYDEILGPQLYMLDNTGLLIEGTKFCVGS 233
N + R+ L+A YDE GP LY +D L + G
Sbjct: 82 NFTRRNLADCLRSRTP-------YHVNLLLAGYDEHEGPALYYMDYLAALAKAPFAAHGY 134
Query: 234 GAEYAQAILDTDYRPDLSEEEAYALATSAIYHACRRDIHSGGCVRLYKINGQGWQQV 290
GA +ILD Y P +S E A L + +R I + + I+ G +
Sbjct: 135 GAFLTLSILDRYYTPTISRERAVELLRKCLEELQKRFILNLPTFSVRIIDKNGIHDL 191
Score = 44.5 bits (106), Expect = 1e-05
Identities = 7/33 (21%), Positives = 18/33 (54%)
Query: 6 TTTLGFRYPEGIILATDSRATANDLIVSQKLNK 38
+G + P+ +++A+D A +N + + +K
Sbjct: 2 EYLIGIQGPDYVLVASDRVAASNIVQMKDDHDK 34
>1q5q_H Proteasome beta-type subunit 1; proteasome assembly, Pro-peptide,
inter-subunit contacts, RH erythropolis, hydrolase;
2.60A {Rhodococcus erythropolis} SCOP: d.153.1.4
Length = 235
Score = 148 bits (374), Expect = 2e-43
Identities = 48/215 (22%), Positives = 72/215 (33%), Gaps = 22/215 (10%)
Query: 115 SQSSTVPHNTSFQVIPVSSSILCTLAGNAADCVYWLHSLAKECKGYECKYRTGMTIRHAA 174
+Q + + +V +AG A + + A E + YE +T A
Sbjct: 21 TQGNLIASRDVEKVYVTDEYSAAGIAGTAGIAIELVRLFAVELEHYEKIEGVPLTFDGKA 80
Query: 175 NLLVNMVRKYRTGNHSSKIPNGLSFGTLMAAYD-----EILGPQLYMLDNTGLLIE--GT 227
N L +MVR GL+ L+ YD E ++ D G E
Sbjct: 81 NRLASMVRGNL-----GAAMQGLAVVPLLVGYDLDADDESRAGRIVSYDVVGGRYEERAG 135
Query: 228 KFCVGSGAEYAQAILDTDYRPDLSEEEAYALATSAIYHACRRDIHSGGCVR-------LY 280
VGSG+ +A++ L Y PD EE A A ++Y A D +GG
Sbjct: 136 YHAVGSGSLFAKSALKKIYSPDSDEETALRAAIESLYDAADDDSATGGPDLTRGIYPTAV 195
Query: 281 KINGQGWQQVLSRDVKDI---YNDRKEAPPGGGDH 312
I G V ++ + G H
Sbjct: 196 TITQAGAVHVSEETTSELARRIVAERTEQGGSARH 230
Score = 46.0 bits (109), Expect = 4e-06
Identities = 14/33 (42%), Positives = 20/33 (60%)
Query: 6 TTTLGFRYPEGIILATDSRATANDLIVSQKLNK 38
TT + Y G++LA D RAT +LI S+ + K
Sbjct: 1 TTIVALTYKGGVLLAGDRRATQGNLIASRDVEK 33
>2jay_A Proteasome; hydrolase; 1.99A {Mycobacterium tuberculosis} PDB:
3mka_C 3mi0_C* 2fhg_H* 2fhh_H 3krd_C* 3mfe_G 3hfa_H*
3h6i_C 3h6f_C 3hf9_H 3mfe_H
Length = 291
Score = 148 bits (375), Expect = 5e-43
Identities = 44/214 (20%), Positives = 74/214 (34%), Gaps = 22/214 (10%)
Query: 115 SQSSTVPHNTSFQVIPVSSSILCTLAGNAADCVYWLHSLAKECKGYECKYRTGMTIRHAA 174
+Q + + +V +AG AA V + A E + YE +T
Sbjct: 78 TQGNMISGRDVRKVYITDDYTATGIAGTAAVAVEFARLYAVELEHYEKLEGVPLTFAGKI 137
Query: 175 NLLVNMVRKYRTGNHSSKIPNGLSFGTLMAAYDEIL-----GPQLYMLDNTGLL-IEGTK 228
N L MVR + + GL L+A YD ++ D G IE
Sbjct: 138 NRLAIMVR-----GNLAAAMQGLLALPLLAGYDIHASDPQSAGRIVSFDAAGGWNIEEEG 192
Query: 229 F-CVGSGAEYAQAILDTDYRPDLSEEEAYALATSAIYHACRRDIHSGGCVRLYK------ 281
+ VGSG+ +A++ + Y + +A A+Y A D +GG +
Sbjct: 193 YQAVGSGSLFAKSSMKKLYSQVTDGDSGLRVAVEALYDAADDDSATGGPDLVRGIFPTAV 252
Query: 282 -INGQGWQQVLSRDVKDI---YNDRKEAPPGGGD 311
I+ G V + ++ + + G
Sbjct: 253 IIDADGAVDVPESRIAELARAIIESRSGADTFGS 286
Score = 51.8 bits (124), Expect = 7e-08
Identities = 12/38 (31%), Positives = 22/38 (57%)
Query: 4 TGTTTLGFRYPEGIILATDSRATANDLIVSQKLNKFCQ 41
GTT + +YP G+++A D R+T ++I + + K
Sbjct: 56 HGTTIVALKYPGGVVMAGDRRSTQGNMISGRDVRKVYI 93
>1q5r_H Proteasome beta-type subunit 1; proteasome assembly, Pro-peptide,
inter-subunit contacts, hydrolase; 3.10A {Rhodococcus
erythropolis} SCOP: d.153.1.4 PDB: 2h6j_H
Length = 294
Score = 148 bits (375), Expect = 5e-43
Identities = 47/213 (22%), Positives = 70/213 (32%), Gaps = 22/213 (10%)
Query: 115 SQSSTVPHNTSFQVIPVSSSILCTLAGNAADCVYWLHSLAKECKGYECKYRTGMTIRHAA 174
+Q + + V +AG A + + A E + YE +T A
Sbjct: 86 TQGNLIASRDVEAVYVTDEYSAAGIAGTAGIAIELVRLFAVELEHYEKIEGVPLTFDGKA 145
Query: 175 NLLVNMVRKYRTGNHSSKIPNGLSFGTLMAAYD-----EILGPQLYMLDNTGLLIE--GT 227
N L +MVR GL+ L+ YD E ++ D G E
Sbjct: 146 NRLASMVRGNL-----GAAMQGLAVVPLLVGYDLDADDESRAGRIVSYDVVGGRYEERAG 200
Query: 228 KFCVGSGAEYAQAILDTDYRPDLSEEEAYALATSAIYHACRRDIHSGGCVR-------LY 280
VGSG+ +A++ L Y PD EE A A ++Y A D +GG
Sbjct: 201 YHAVGSGSLFAKSALKKIYSPDSDEETALRAAIESLYDAADDDSATGGPDLTRGIYPTAV 260
Query: 281 KINGQGWQQVLSRDVKDI---YNDRKEAPPGGG 310
I G V ++ + G
Sbjct: 261 TITQAGAVHVSEETTSELARRIVAERTEQGGSA 293
Score = 51.5 bits (123), Expect = 1e-07
Identities = 14/35 (40%), Positives = 20/35 (57%)
Query: 4 TGTTTLGFRYPEGIILATDSRATANDLIVSQKLNK 38
GTT + Y G++LA D RAT +LI S+ +
Sbjct: 64 HGTTIVALTYKGGVLLAGDRRATQGNLIASRDVEA 98
>1ryp_J 20S proteasome; multicatalytic proteinase, protein degradation,
antigen processing, hydrolase, protease; 1.90A
{Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 1jd2_I*
1g65_I 1vsy_J 2f16_I* 2fak_I* 2fny_I* 2gpl_I* 3d29_I*
3dy3_I* 3dy4_I* 3e47_I* 3gpj_I* 3gpt_I* 3gpw_I* 3hye_I*
3l5q_N 3mg0_I* 3mg4_I* 3oeu_I* 3oev_I* ...
Length = 204
Score = 141 bits (358), Expect = 2e-41
Identities = 32/177 (18%), Positives = 61/177 (34%), Gaps = 11/177 (6%)
Query: 114 FSQSSTVPHNTSFQVIPVSSSILCTLAGNAADCVYWLHSLAKECKGYECKYRTGMTIRHA 173
S N ++ + + G A D + Y+ K +
Sbjct: 28 LGSQSLGVSNKFEKIFHYGH-VFLGITGLATDVTTLNEMFRYKTNLYKLKEERAIEPETF 86
Query: 174 ANLLVNMVRKYRTGNHSSKIPNGLSFGTLMAAYDEILG-PQLYMLDNTGLLIEGTKFCV- 231
L+ + + + R G G ++A + G P + D G + E F V
Sbjct: 87 TQLVSSSLYERRFG--------PYFVGPVVAGINSKSGKPFIAGFDLIGCIDEAKDFIVS 138
Query: 232 GSGAEYAQAILDTDYRPDLSEEEAYALATSAIYHACRRDIHSGGCVRLYKINGQGWQ 288
G+ ++ + ++ Y P+L E+ + + A+ +A RD SG +Y I
Sbjct: 139 GTASDQLFGMCESLYEPNLEPEDLFETISQALLNAADRDALSGWGAVVYIIKKDEVV 195
Score = 49.5 bits (119), Expect = 2e-07
Identities = 9/35 (25%), Positives = 14/35 (40%)
Query: 4 TGTTTLGFRYPEGIILATDSRATANDLIVSQKLNK 38
G + + + +A D R + L VS K K
Sbjct: 7 NGGIVVAMTGKDCVAIACDLRLGSQSLGVSNKFEK 41
>1iru_M 20S proteasome; cell cycle, immune response, proteolysis,
ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4
PDB: 3unb_L* 3une_L 3unf_L* 3unh_L
Length = 213
Score = 140 bits (356), Expect = 6e-41
Identities = 32/186 (17%), Positives = 62/186 (33%), Gaps = 17/186 (9%)
Query: 114 FSQSSTVPHNTSFQVIPVSSSILCTLAGNAADCVYWLHSLAKECKGYECKYRTGMTIRHA 173
S+ ++ S + ++ + +G DC+ + K Y+ MT
Sbjct: 29 LSEGFSIHTRDSPKCYKLTDKTVIGCSGFHGDCLTLTKIIEARLKMYKHSNNKAMTTGAI 88
Query: 174 ANLLVNMVRKYRTGNHSSKIPNGLSFGTLMAAYDEILGPQLYMLDNTGLLIEGTKFCVGS 233
A +L ++ R ++ DE +Y D G + GS
Sbjct: 89 AAMLSTILYSRRFF--------PYYVYNIIGGLDEEGKGAVYSFDPVGSYQRDSFKAGGS 140
Query: 234 GAEYAQAILD---------TDYRPDLSEEEAYALATSAIYHACRRDIHSGGCVRLYKING 284
+ Q +LD LS + A L A RD+++G +R+ +
Sbjct: 141 ASAMLQPLLDNQVGFKNMQNVEHVPLSLDRAMRLVKDVFISAAERDVYTGDALRICIVTK 200
Query: 285 QGWQQV 290
+G ++
Sbjct: 201 EGIREE 206
Score = 48.0 bits (115), Expect = 8e-07
Identities = 9/35 (25%), Positives = 16/35 (45%)
Query: 4 TGTTTLGFRYPEGIILATDSRATANDLIVSQKLNK 38
G T L + I+A+D+R + I ++ K
Sbjct: 8 NGGTILAIAGEDFAIVASDTRLSEGFSIHTRDSPK 42
>1iru_N 20S proteasome; cell cycle, immune response, proteolysis,
ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4
PDB: 3unb_M* 3une_M 3unf_M* 3unh_M
Length = 219
Score = 140 bits (355), Expect = 1e-40
Identities = 39/178 (21%), Positives = 64/178 (35%), Gaps = 12/178 (6%)
Query: 115 SQSSTVPHNTSFQVIPVSSSILCTLAGNAADCVYWLHSLAKECKGYECKYRTG--MTIRH 172
S S +++ V++S + +G+ AD Y L + E G + R
Sbjct: 29 SYGSLARFRNISRIMRVNNSTMLGASGDYADFQYLKQVLGQMVIDEEL-LGDGHSYSPRA 87
Query: 173 AANLLVNMVRKYRTGNHSSKIPNGLSFGTLMAAYDEILGPQLYMLDNTGLLIEGTKFCVG 232
+ L + R SK+ N L ++ Y + L +D G+ E G
Sbjct: 88 IHSWLTRAMYSRR-----SKM-NPLWNTMVIGGYADG-ESFLGYVDMLGVAYEAPSLATG 140
Query: 233 SGAEYAQAILDTDYR--PDLSEEEAYALATSAIYHACRRDIHSGGCVRLYKINGQGWQ 288
GA AQ +L P LS+ EA L + RD S + + +G +
Sbjct: 141 YGAYLAQPLLREVLEKQPVLSQTEARDLVERCMRVLYYRDARSYNRFQTATVTEKGVE 198
Score = 50.3 bits (121), Expect = 1e-07
Identities = 9/35 (25%), Positives = 20/35 (57%)
Query: 4 TGTTTLGFRYPEGIILATDSRATANDLIVSQKLNK 38
TGT+ LG ++ G+++A D + L + +++
Sbjct: 7 TGTSVLGVKFEGGVVIAADMLGSYGSLARFRNISR 41
>1ryp_M 20S proteasome; multicatalytic proteinase, protein degradation,
antigen processing, hydrolase, protease; 1.90A
{Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 1fnt_M*
1jd2_L* 1g65_L 1vsy_M 1z7q_M 2f16_L* 2fak_L* 2fny_L*
2gpl_L* 3d29_L* 3dy3_L* 3dy4_L* 3e47_L* 3gpj_L* 3gpt_L*
3gpw_L* 3hye_L* 3l5q_Q 3mg0_L* 3mg4_L* ...
Length = 222
Score = 133 bits (336), Expect = 6e-38
Identities = 34/202 (16%), Positives = 59/202 (29%), Gaps = 26/202 (12%)
Query: 114 FSQSSTVPHNTSFQVIPVSSSILCTLAGNAADCVYWLHSLAKECKGYECKY-RTGMTIRH 172
++ +V +I+ + G AAD + K Y + ++I
Sbjct: 29 NITDYSINSRYEPKVFDCGDNIVMSANGFAADGDALVKRFKNSVKWYHFDHNDKKLSINS 88
Query: 173 AANLLVNMVRKYRTGNHSSKIPNGLSFGTLMAAYDEILGPQLYMLDNTGLLIEGTKFCVG 232
AA + +++ R T++A DE +Y D G G
Sbjct: 89 AARNIQHLLYGKRFF--------PYYVHTIIAGLDEDGKGAVYSFDPVGSYEREQCRAGG 140
Query: 233 SGAEYAQAILDTDY-----------------RPDLSEEEAYALATSAIYHACRRDIHSGG 275
+ A LD LS EE L + A R I G
Sbjct: 141 AAASLIMPFLDNQVNFKNQYEPGTNGKVKKPLKYLSVEEVIKLVRDSFTSATERHIQVGD 200
Query: 276 CVRLYKINGQGWQQVLSRDVKD 297
+ + + G ++ +D
Sbjct: 201 GLEILIVTKDGVRKEFYELKRD 222
Score = 45.8 bits (109), Expect = 4e-06
Identities = 11/35 (31%), Positives = 16/35 (45%)
Query: 4 TGTTTLGFRYPEGIILATDSRATANDLIVSQKLNK 38
G T LG + +LA D+R + I S+ K
Sbjct: 8 NGGTILGIAGEDFAVLAGDTRNITDYSINSRYEPK 42
>1ryp_N 20S proteasome; multicatalytic proteinase, protein degradation,
antigen processing, hydrolase, protease; 1.90A
{Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 1fnt_N*
1jd2_M* 1g65_M 1vsy_N 1z7q_N 2f16_M* 2fak_M* 2fny_M*
2gpl_M* 3d29_M* 3dy3_M* 3dy4_M* 3e47_M* 3gpj_M* 3gpt_M*
3gpw_M* 3hye_M* 3l5q_R 3mg0_M* 3mg4_M* ...
Length = 233
Score = 130 bits (329), Expect = 9e-37
Identities = 29/188 (15%), Positives = 56/188 (29%), Gaps = 16/188 (8%)
Query: 115 SQSSTVPHNTSFQVIPVSSSILCTLAGNAADCVYWLHSLAKECKGYECKYRTG-----MT 169
S S + N ++IPV + + ++G+ +D + L +
Sbjct: 29 SYGSLLRFNGVERLIPVGDNTVVGISGDISDMQHIERLLKDLVTENAYDNPLADAEEALE 88
Query: 170 IRHAANLLVNMVRKYRTGNHSSKIPNGLSFGTLMAAYDEILGPQLYMLDNTGLLIEGTKF 229
+ L ++ + R+ N L ++A L ++ G+
Sbjct: 89 PSYIFEYLATVMYQRRSK------MNPLWNAIIVAGVQSNGDQFLRYVNLLGVTYSSPTL 142
Query: 230 CVGSGAEYAQAILDTDYR-----PDLSEEEAYALATSAIYHACRRDIHSGGCVRLYKING 284
G GA A +L P + + A +A+ RD S L I+
Sbjct: 143 ATGFGAHMANPLLRKVVDRESDIPKTTVQVAEEAIVNAMRVLYYRDARSSRNFSLAIIDK 202
Query: 285 QGWQQVLS 292
Sbjct: 203 NTGLTFKK 210
Score = 48.1 bits (115), Expect = 9e-07
Identities = 9/36 (25%), Positives = 20/36 (55%)
Query: 3 ITGTTTLGFRYPEGIILATDSRATANDLIVSQKLNK 38
+TGT+ + +Y G+I+A D+ + L+ + +
Sbjct: 6 VTGTSVISMKYDNGVIIAADNLGSYGSLLRFNGVER 41
>1g0u_M Proteasome component PRE4; ubiquitin, degradation, protease,
NTN-hydrolase; 2.40A {Saccharomyces cerevisiae} SCOP:
d.153.1.4 PDB: 2zcy_M* 3bdm_M* 3mg6_M* 3mg7_M* 3mg8_M*
3nzj_M* 3nzw_M* 3nzx_M*
Length = 266
Score = 128 bits (323), Expect = 2e-35
Identities = 31/188 (16%), Positives = 58/188 (30%), Gaps = 16/188 (8%)
Query: 114 FSQSSTVPHNTSFQVIPVSSSILCTLAGNAADCVYWLHSLAKECKGYECKYRTG-----M 168
S S + N ++IPV + + ++G+ +D + L +
Sbjct: 61 GSYGSLLRFNGVERLIPVGDNTVVGISGDISDMQHIERLLKDLVTENAYDNPLADAEEAL 120
Query: 169 TIRHAANLLVNMVRKYRTGNHSSKIPNGLSFGTLMAAYDEILGPQLYMLDNTGLLIEGTK 228
+ L ++ + R SK+ N L ++A L ++ G+
Sbjct: 121 EPSYIFEYLATVMYQRR-----SKM-NPLWNAIIVAGVQSNGDQFLRYVNLLGVTYSSPT 174
Query: 229 FCVGSGAEYAQAILDTDYR-----PDLSEEEAYALATSAIYHACRRDIHSGGCVRLYKIN 283
G GA A +L P + + A +A+ RD S L I+
Sbjct: 175 LATGFGAHMANPLLRKVVDRESDIPKTTVQVAEEAIVNAMRVLYYRDARSSRNFSLAIID 234
Query: 284 GQGWQQVL 291
Sbjct: 235 KNTGLTFK 242
Score = 47.0 bits (112), Expect = 2e-06
Identities = 9/36 (25%), Positives = 20/36 (55%)
Query: 3 ITGTTTLGFRYPEGIILATDSRATANDLIVSQKLNK 38
+TGT+ + +Y G+I+A D+ + L+ + +
Sbjct: 39 VTGTSVISMKYDNGVIIAADNLGSYGSLLRFNGVER 74
>1q5q_A Proteasome alpha-type subunit 1; proteasome assembly, Pro-peptide,
inter-subunit contacts, RH erythropolis, hydrolase;
2.60A {Rhodococcus erythropolis} SCOP: d.153.1.4 PDB:
2h6j_A 1q5r_A
Length = 259
Score = 78.1 bits (192), Expect = 6e-17
Identities = 28/152 (18%), Positives = 46/152 (30%), Gaps = 10/152 (6%)
Query: 128 VIPVSSSILCTLAGNAADCVYWLHSLAKECKGYECKY-RTGMTIRHAANLLVNMVRKYRT 186
V + + G + + Y R +T R AN +
Sbjct: 53 VSELYDRLGFAAVGKYNEFENLRRAGIVHADMRGYSYDRRDVTGRSLANAYAQTL----- 107
Query: 187 GNHSSKIPNGLSFGTLMA---AYDEILGPQLYMLDNTGLLIEGTKFCV-GSGAEYAQAIL 242
G ++ P +A PQLY + G +++ F V G E +
Sbjct: 108 GTIFTEQPKPYEVEICVAEVGRVGSPKAPQLYRITYDGSIVDEQHFVVMGGTTEPIATAM 167
Query: 243 DTDYRPDLSEEEAYALATSAIYHACRRDIHSG 274
YR DL E A +A +A+ +
Sbjct: 168 RESYRADLDLEAAVGIAVNALRQGGAGEGEKR 199
Score = 33.0 bits (75), Expect = 0.092
Identities = 4/29 (13%), Positives = 14/29 (48%)
Query: 4 TGTTTLGFRYPEGIILATDSRATANDLIV 32
G + + + +G++ ++ +TA +
Sbjct: 26 RGRSVVVLTFRDGVLFVAENPSTALHKVS 54
>1iru_G 20S proteasome; cell cycle, immune response, proteolysis,
ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4
PDB: 3unb_F* 3une_F 3unf_F* 3unh_F
Length = 254
Score = 69.7 bits (171), Expect = 4e-14
Identities = 27/139 (19%), Positives = 55/139 (39%), Gaps = 4/139 (2%)
Query: 128 VIPVSSSILCTLAGNAADCVYWLHSLAKECKGYECKYRTGMTIRHAANLLVNMVRKYRTG 187
+ V + +AG AD +E + + + ++H A+ + V Y
Sbjct: 66 LFNVDRHVGMAVAGLLADARSLADIAREEASNFRSNFGYNIPLKHLADRVAMYVHAY--T 123
Query: 188 NHSSKIPNGLSFGTLMAAYDEILGPQLYMLDNTGLLIEGTKFCVGSGAEYAQAILDTDYR 247
+S+ P G SF ++ +Y G QLYM+D +G+ +G + A+ ++
Sbjct: 124 LYSAVRPFGCSF--MLGSYSVNDGAQLYMIDPSGVSYGYWGCAIGKARQAAKTEIEKLQM 181
Query: 248 PDLSEEEAYALATSAIYHA 266
+++ + IY
Sbjct: 182 KEMTCRDIVKEVAKIIYIV 200
>1ryp_E 20S proteasome; multicatalytic proteinase, protein degradation,
antigen processing, hydrolase, protease; 1.90A
{Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 1jd2_D*
1g65_D 2f16_D* 2fak_D* 2fny_D* 2gpl_D* 3d29_D* 3dy3_D*
3dy4_D* 3e47_D* 3gpj_D* 3gpt_D* 3gpw_D* 3hye_D* 3mg0_D*
3mg4_D* 3okj_D* 3shj_D* 3tdd_D* 2z5c_C ...
Length = 242
Score = 69.2 bits (170), Expect = 6e-14
Identities = 28/142 (19%), Positives = 55/142 (38%), Gaps = 4/142 (2%)
Query: 128 VIPVSSSILCTLAGNAADCVYWLHSLAKECKGYECKYRTGMTIRHAANLLVNMVRKYRTG 187
++ + I C ++G AD + + Y + + + ++ ++
Sbjct: 59 IVEIDRHIGCAMSGLTADARSMIEHARTAAVTHNLYYDEDINVESLTQSVCDLALRF-GE 117
Query: 188 NHSSKIPNGL-SFG--TLMAAYDEILGPQLYMLDNTGLLIEGTKFCVGSGAEYAQAILDT 244
S + FG L+A +D G QL+ + +G +GSG+E AQA L
Sbjct: 118 GASGEERLMSRPFGVALLIAGHDADDGYQLFHAEPSGTFYRYNAKAIGSGSEGAQAELLN 177
Query: 245 DYRPDLSEEEAYALATSAIYHA 266
++ L+ +EA L +
Sbjct: 178 EWHSSLTLKEAELLVLKILKQV 199
>3mi0_A Proteasome subunit alpha; enzyme inhibitors, lactones, proteasome
endopeptidase comple mycobacterium tuberculosis,
hydrolase; HET: SA6; 2.20A {Mycobacterium tuberculosis}
PDB: 3h6f_A 3krd_A* 3h6i_A* 3mka_A 2fhh_A* 2fhg_A 3hfa_D
3hf9_A 3mfe_D
Length = 248
Score = 68.8 bits (168), Expect = 9e-14
Identities = 27/155 (17%), Positives = 46/155 (29%), Gaps = 10/155 (6%)
Query: 128 VIPVSSSILCTLAGNAADCVYWLHSLAKECKGYECKY-RTGMTIRHAANLLVNMVRKYRT 186
+ + + AG + + Y R +T R AN+ + T
Sbjct: 53 ISELYDRVGFAAAGKFNEFDNLRRGGIQFADTRGYAYDRRDVTGRQLANVYAQTLGTIFT 112
Query: 187 GNHSSKIPNGLSFGTLMA---AYDEILGPQLYMLDNTGLLIEGTKFCV-GSGAEYAQAIL 242
P + +A Y E P+LY + G + + F V G E L
Sbjct: 113 ---EQAKPYEVEL--CVAEVAHYGETKRPELYRITYDGSIADEPHFVVMGGTTEPIANAL 167
Query: 243 DTDYRPDLSEEEAYALATSAIYHACRRDIHSGGCV 277
Y + S +A +A +A+
Sbjct: 168 KESYAENASLTDALRIAVAALRAGSADTSGGDQPT 202
Score = 29.1 bits (65), Expect = 1.7
Identities = 2/23 (8%), Positives = 10/23 (43%)
Query: 5 GTTTLGFRYPEGIILATDSRATA 27
+ + Y G++ ++ + +
Sbjct: 27 AKSVVALAYAGGVLFVAENPSRS 49
>1j2p_A Alpha-ring, proteasome alpha subunit; hydrolase; 2.60A
{Archaeoglobus fulgidus} SCOP: d.153.1.4 PDB: 1j2q_A*
Length = 246
Score = 68.9 bits (169), Expect = 9e-14
Identities = 32/139 (23%), Positives = 58/139 (41%), Gaps = 6/139 (4%)
Query: 128 VIPVSSSILCTLAGNAADCVYWLHSLAKECKGYECKYRTGMTIRHAANLLVNMVRKYRTG 187
+ + I +G AD + E + Y +T++ A + + ++Y
Sbjct: 67 IYKIDEHICAATSGLVADARVLIDRARIEAQINRLTYDIPITVKELAKKICDFKQQY--T 124
Query: 188 NHSSKIPNGLSFGTLMAAYDEILGPQLYMLDNTGLLIEGTKFCVGSGAEYAQAILDTDYR 247
+ P G+S L+A +E P+LY D +G L+E +G G + +YR
Sbjct: 125 QYGGVRPFGVSL--LIAGVNE--VPKLYETDPSGALLEYKATAIGMGRMAVTEFFEKEYR 180
Query: 248 PDLSEEEAYALATSAIYHA 266
DLS ++A L A+ +
Sbjct: 181 DDLSFDDAMVLGLVAMGLS 199
>1ryp_C 20S proteasome; multicatalytic proteinase, protein degradation,
antigen processing, hydrolase, protease; 1.90A
{Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 1jd2_B*
1g65_B 2f16_B* 2fak_B* 2fny_B* 2gpl_B* 3d29_B* 3dy3_B*
3dy4_B* 3e47_B* 3gpj_B* 3gpt_B* 3gpw_B* 3hye_B* 3mg0_B*
3mg4_B* 3okj_B* 3shj_B* 3tdd_B* 3nzj_B* ...
Length = 244
Score = 68.5 bits (168), Expect = 1e-13
Identities = 33/139 (23%), Positives = 58/139 (41%), Gaps = 4/139 (2%)
Query: 128 VIPVSSSILCTLAGNAADCVYWLHSLAKECKGYECKYRTGMTIRHAANLLVNMVRKYRTG 187
+ ++ I +AG AD +++ + Y Y + + L ++ + Y
Sbjct: 65 LYKLNDKIAVAVAGLTADAEILINTARIHAQNYLKTYNEDIPVEILVRRLSDIKQGY--T 122
Query: 188 NHSSKIPNGLSFGTLMAAYDEILGPQLYMLDNTGLLIEGTKFCVGSGAEYAQAILDTDYR 247
H P G+SF + A YD+ G QLY + +G VG+ AQ +L DY+
Sbjct: 123 QHGGLRPFGVSF--IYAGYDDRYGYQLYTSNPSGNYTGWKAISVGANTSAAQTLLQMDYK 180
Query: 248 PDLSEEEAYALATSAIYHA 266
D+ ++A LA +
Sbjct: 181 DDMKVDDAIELALKTLSKT 199
>1ryp_B 20S proteasome; multicatalytic proteinase, protein degradation,
antigen processing, hydrolase, protease; 1.90A
{Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 1fnt_B
1g0u_A* 1jd2_A* 1g65_A 1z7q_B 2f16_A* 2fak_A* 2fny_A*
2gpl_A* 2zcy_A* 3bdm_A* 3d29_A* 3dy3_A* 3dy4_A* 3e47_A*
3gpj_A* 3gpt_A* 3gpw_A* 3hye_A* 3mg0_A* ...
Length = 250
Score = 67.3 bits (165), Expect = 3e-13
Identities = 27/140 (19%), Positives = 54/140 (38%), Gaps = 5/140 (3%)
Query: 128 VIPVSSSILCTLAGNAADCVYWLHSLAKECKG-YECKYRTGMTIRHAANLLVNMVRKYRT 186
V ++ I +G D + K Y+ Y + + + ++++
Sbjct: 64 VSLLTPDIGAVYSGMGPDYRVLVDKSRKVAHTSYKRIYGEYPPTKLLVSEVAKIMQEA-- 121
Query: 187 GNHSSKIPNGLSFGTLMAAYDEILGPQLYMLDNTGLLIEGTKFCVGSGAEYAQAILDTDY 246
P G+S L+A +DE G LY +D +G +G G+ A+ L+ +
Sbjct: 122 TQSGGVRPFGVSL--LIAGHDEFNGFSLYQVDPSGSYFPWKATAIGKGSVAAKTFLEKRW 179
Query: 247 RPDLSEEEAYALATSAIYHA 266
+L E+A +A + +
Sbjct: 180 NDELELEDAIHIALLTLKES 199
>1iru_C 20S proteasome; cell cycle, immune response, proteolysis,
ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4
PDB: 3unb_B* 3une_B 3unf_B* 3unh_B
Length = 261
Score = 67.0 bits (164), Expect = 5e-13
Identities = 32/148 (21%), Positives = 63/148 (42%), Gaps = 5/148 (3%)
Query: 120 VPHNTSFQVIPVSSSILCTLAGNAADCVYWLHSLAKECKGYECKYRTGMTIRHAANLLVN 179
S ++ ++ + C++AG +D + L + Y +Y+ + L +
Sbjct: 57 DEVFFSEKIYKLNEDMACSVAGITSDANVLTNELRLIAQRYLLQYQEPIPCEQLVTALCD 116
Query: 180 MVRKYRTGNHSSKIPNGLSFGTLMAAYDEILGPQLYMLDNTGLLIEGTKFCVGSGAEYAQ 239
+ + Y K P G+S L +D+ G QLY D +G C+G+ + A
Sbjct: 117 IKQAY--TQFGGKRPFGVSL--LYIGWDKHYGFQLYQSDPSGNYGGWKATCIGNNSAAAV 172
Query: 240 AILDTDYR-PDLSEEEAYALATSAIYHA 266
++L DY+ +++ + A ALA +
Sbjct: 173 SMLKQDYKEGEMTLKSALALAIKVLNKT 200
>1iru_B 20S proteasome; cell cycle, immune response, proteolysis,
ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4
PDB: 3unb_A* 3une_A 3unf_A* 3unh_A
Length = 233
Score = 64.5 bits (158), Expect = 2e-12
Identities = 27/139 (19%), Positives = 52/139 (37%), Gaps = 5/139 (3%)
Query: 128 VIPVSSSILCTLAGNAADCVYWLHSLAKECKGYECKYRTGMTIRHAANLLVNMVRKYRTG 187
V P++ I +G D +H K + Y Y+ + + +++++Y
Sbjct: 64 VEPITKHIGLVYSGMGPDYRVLVHRARKLAQQYYLVYQEPIPTAQLVQRVASVMQEY--T 121
Query: 188 NHSSKIPNGLSFGTLMAAYDEILGPQLYMLDNTGLLIEGTKFCVGSGAEYAQAILDTDYR 247
P G+S L+ ++E P L+ D +G +G + L+ Y
Sbjct: 122 QSGGVRPFGVSL--LICGWNE-GRPYLFQSDPSGAYFAWKATAMGKNYVNGKTFLEKRYN 178
Query: 248 PDLSEEEAYALATSAIYHA 266
DL E+A A + +
Sbjct: 179 EDLELEDAIHTAILTLKES 197
>1iru_E 20S proteasome; cell cycle, immune response, proteolysis,
ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4
PDB: 3unb_D* 3une_D 3unf_D* 3unh_D
Length = 241
Score = 64.9 bits (159), Expect = 2e-12
Identities = 30/142 (21%), Positives = 61/142 (42%), Gaps = 6/142 (4%)
Query: 128 VIPVSSSILCTLAGNAADCVYWLHSLAKECKGYECKYRTGMTIRHAANLLVNMVRKY--R 185
++ + + I C ++G AD + E + + Y MT+ + N+ ++
Sbjct: 67 IVEIDAHIGCAMSGLIADAKTLIDKARVETQNHWFTYNETMTVESVTQAVSNLALQFGEE 126
Query: 186 TGNHSSKI-PNGLSFGTLMAAYDEILGPQLYMLDNTGLLIEGTKFCVGSGAEYAQAILDT 244
+ + P G++ L DE GPQL+ +D +G ++ +GS +E AQ+ L
Sbjct: 127 DADPGAMSRPFGVAL--LFGGVDE-KGPQLFHMDPSGTFVQCDARAIGSASEGAQSSLQE 183
Query: 245 DYRPDLSEEEAYALATSAIYHA 266
Y ++ +EA + +
Sbjct: 184 LYHKSMTLKEAIKSSLIILKQV 205
>1yar_A Proteasome alpha subunit; proteasome 20S, PA26 proteasome activator
11S, hydrolase-HYD activator complex; 1.90A
{Thermoplasma acidophilum} SCOP: d.153.1.4 PDB: 1ya7_A
1pma_A 3c91_A 3c92_A 3ipm_A 2ku1_A 2ku2_A 1yau_A 3jrm_A
3jse_A 3jtl_A
Length = 233
Score = 63.8 bits (156), Expect = 3e-12
Identities = 28/139 (20%), Positives = 61/139 (43%), Gaps = 5/139 (3%)
Query: 128 VIPVSSSILCTLAGNAADCVYWLHSLAKECKGYECKYRTGMTIRHAANLLVNMVRKYRTG 187
+ + + +G AD + + + Y + + I + + + +++Y
Sbjct: 67 IQLIDDYVAAVTSGLVADARVLVDFARISAQQEKVTYGSLVNIENLVKRVADQMQQY--T 124
Query: 188 NHSSKIPNGLSFGTLMAAYDEILGPQLYMLDNTGLLIEGTKFCVGSGAEYAQAILDTDYR 247
+ P G+S + A D+ +GP+L+ D G + E +GSG + + L+ +Y+
Sbjct: 125 QYGGVRPYGVSL--IFAGIDQ-IGPRLFDCDPAGTINEYKATAIGSGKDAVVSFLEREYK 181
Query: 248 PDLSEEEAYALATSAIYHA 266
+L E+EA L A+ +
Sbjct: 182 ENLPEKEAVTLGIKALKSS 200
>1iru_A 20S proteasome; cell cycle, immune response, proteolysis,
ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4
PDB: 3unb_G* 3une_G 3unf_G* 3unh_G
Length = 246
Score = 63.8 bits (156), Expect = 4e-12
Identities = 24/141 (17%), Positives = 51/141 (36%), Gaps = 6/141 (4%)
Query: 128 VIPVSSSILCTLAGNAADCVYWLHSLAKECKGYECKYRTGMTIRHAANLLVNMVRKYRTG 187
+ ++ +I C + G AD + E ++ KY + + + ++ + Y
Sbjct: 69 LFKITENIGCVMTGMTADSRSQVQRARYEAANWKYKYGYEIPVDMLCKRIADISQVY--T 126
Query: 188 NHSSKIPNGLSFGTLMAAYDEILGPQLYMLDNTGLLIEGTKFCVGSGAEYAQAILDTDYR 247
++ P G ++ DE GPQ+Y D G G + + L+ +
Sbjct: 127 QNAEMRPLGCCM--ILIGIDEEQGPQVYKCDPAGYYCGFKATAAGVKQTESTSFLEKKVK 184
Query: 248 --PDLSEEEAYALATSAIYHA 266
D + E+ A + +
Sbjct: 185 KKFDWTFEQTVETAITCLSTV 205
Score = 63.9 bits (156), Expect = 5e-12
Identities = 34/139 (24%), Positives = 61/139 (43%), Gaps = 5/139 (3%)
Query: 128 VIPVSSSILCTLAGNAADCVYWLHSLAKECKGYECKYRTGMTIRHAANLLVNMVRKYRTG 187
+ + + +G AD + E + Y Y ++I A + ++ + Y
Sbjct: 71 IFQIDDHVAAATSGLVADARVLIDRARLEAQIYRLTYGEEISIEMLAKKICDIKQAY--T 128
Query: 188 NHSSKIPNGLSFGTLMAAYDEILGPQLYMLDNTGLLIEGTKFCVGSGAEYAQAILDTDYR 247
H P G+S L+A D+ +L+ D +G LIE +GSG +L+ +YR
Sbjct: 129 QHGGVRPFGVSL--LIAGIDK-NEARLFETDPSGALIEYKATAIGSGRPVVMELLEKEYR 185
Query: 248 PDLSEEEAYALATSAIYHA 266
D++ +E LA +A+ A
Sbjct: 186 DDITLDEGLELAITALTKA 204
>1ryp_A 20S proteasome; multicatalytic proteinase, protein degradation,
antigen processing, hydrolase, protease; 1.90A
{Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 1jd2_G*
1g65_G 1vsy_A 2f16_G* 2fak_G* 2fny_G* 2gpl_G* 3d29_G*
3dy3_G* 3dy4_G* 3e47_G* 3gpj_G* 3gpt_G* 3gpw_G* 3hye_G*
3l5q_A 3mg0_G* 3mg4_G* 3oeu_G* 3oev_G* ...
Length = 243
Score = 62.6 bits (153), Expect = 1e-11
Identities = 28/150 (18%), Positives = 50/150 (33%), Gaps = 19/150 (12%)
Query: 128 VIPVSSSILCTLAGNAADCVYWLHSLAK----ECKGYECKYRTGMTIRHAANLLVNMVRK 183
+ +S +I + G D + A E + KY M A + N+ +
Sbjct: 63 IFCISRTIGMVVNGPIPDA----RNAALRAKAEAAEFRYKYGYDMPCDVLAKRMANLSQI 118
Query: 184 YRTGNHSSKIPNGLSFGTLMAAYDEILGPQLYMLDNTGLLIEGTKFCVGSGAEYAQAILD 243
Y + P G+ + DE LGP +Y D G + G + L+
Sbjct: 119 Y--TQRAYMRPLGVIL--TFVSVDEELGPSIYKTDPAGYYVGYKATATGPKQQEITTNLE 174
Query: 244 TDYR-------PDLSEEEAYALATSAIYHA 266
++ + S E+ A + + A
Sbjct: 175 NHFKKSKIDHINEESWEKVVEFAITHMIDA 204
>1iru_D 20S proteasome; cell cycle, immune response, proteolysis,
ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4
PDB: 3unf_C* 3une_C* 3unh_C 3unb_C*
Length = 248
Score = 61.9 bits (151), Expect = 2e-11
Identities = 25/140 (17%), Positives = 57/140 (40%), Gaps = 6/140 (4%)
Query: 128 VIPVSSSILCTLAGNAADCVYWLHSLAKECKGYECKYRTGMTIRHAANLLVNMVRKYRTG 187
+ + ++ AG AD ++ EC+ + +T+ + + ++ ++Y
Sbjct: 62 ICALDDNVCMAFAGLTADARIVINRARVECQSHRLTVEDPVTVEYITRYIASLKQRY--T 119
Query: 188 NHSSKIPNGLSFGTLMAAYDEILGPQLYMLDNTGLLIEGTKFCVGSGAEYAQAILDTDYR 247
+ + P G+S L+ +D P+LY D +G +G GA+ + L+ +Y
Sbjct: 120 QSNGRRPFGISA--LIVGFDFDGTPRLYQTDPSGTYHAWKANAIGRGAKSVREFLEKNYT 177
Query: 248 --PDLSEEEAYALATSAIYH 265
+++ L A+
Sbjct: 178 DEAIETDDLTIKLVIKALLE 197
Score = 26.8 bits (60), Expect = 8.3
Identities = 7/34 (20%), Positives = 17/34 (50%), Gaps = 1/34 (2%)
Query: 5 GTTTLGFRYPEGIILATDSRATANDLIVSQKLNK 38
G+T +G R + ++L + ++ L + + K
Sbjct: 29 GSTAVGVRGRDIVVLGVEKKSV-AKLQDERTVRK 61
>1iru_F 20S proteasome; cell cycle, immune response, proteolysis,
ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4
PDB: 3unb_E* 3une_E 3unf_E* 3unh_E
Length = 263
Score = 61.5 bits (150), Expect = 4e-11
Identities = 22/141 (15%), Positives = 55/141 (39%), Gaps = 7/141 (4%)
Query: 128 VIPVSSSILCTLAGNAADCVYWLHSLAKECKGYECKYRTGMTIRHAANLLVNMVRKYRTG 187
++ V + I ++AG AD + + +EC + + + +L+ + +
Sbjct: 63 ILHVDNHIGISIAGLTADARLLCNFMRQECLDSRFVFDRPLPVSRLVSLIGSKTQIP--T 120
Query: 188 NHSSKIPNGLSFGTLMAAYDEILGPQLYMLDNTGLLIEGTKFCVGSGAEYAQAILDTDYR 247
+ P G+ L+A YD+ +GP ++ + + +G+ ++ A+ L+
Sbjct: 121 QRYGRRPYGVGL--LIAGYDD-MGPHIFQTCPSANYFDCRAMSIGARSQSARTYLERHMS 177
Query: 248 --PDLSEEEAYALATSAIYHA 266
+ + E A+
Sbjct: 178 EFMECNLNELVKHGLRALRET 198
Score = 26.9 bits (60), Expect = 8.9
Identities = 9/31 (29%), Positives = 15/31 (48%), Gaps = 1/31 (3%)
Query: 5 GTTTLGFRYPEGIILATDSRATANDLIVSQK 35
G+ T+G + +L RA ++L QK
Sbjct: 32 GSATVGLKSKTHAVLVALKRAQ-SELAAHQK 61
>1ryp_D 20S proteasome; multicatalytic proteinase, protein degradation,
antigen processing, hydrolase, protease; 1.90A
{Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 1jd2_C*
1g65_C 2f16_C* 2fak_C* 2fny_C* 2gpl_C* 3d29_C* 3dy3_C*
3dy4_C* 3e47_C* 3gpj_C* 3gpt_C* 3gpw_C* 3hye_C* 3mg0_C*
3mg4_C* 3oeu_C* 3oev_C* 3okj_C* 3shj_C* ...
Length = 241
Score = 60.4 bits (147), Expect = 6e-11
Identities = 27/155 (17%), Positives = 59/155 (38%), Gaps = 16/155 (10%)
Query: 120 VPHNTSFQVIPVSSSILCTLAGNAADCVYWLHSLA----KECKGYECKYRTGMTIRHAAN 175
T +V + S ++ + +G AD L E + + +T+ +
Sbjct: 54 DTRITPSKVSKIDSHVVLSFSGLNADS----RILIEKARVEAQSHRLTLEDPVTVEYLTR 109
Query: 176 LLVNMVRKYRTGNHSSKIPNGLSFGTLMAAYD-EILGPQLYMLDNTGLLIEGTKFCVGSG 234
+ + ++Y P G+S L+A +D P+LY + +G+ + +G
Sbjct: 110 YVAGVQQRY--TQSGGVRPFGVST--LIAGFDPRDDEPKLYQTEPSGIYSSWSAQTIGRN 165
Query: 235 AEYAQAILDTDY---RPDLSEEEAYALATSAIYHA 266
++ + L+ +Y P + EE L ++
Sbjct: 166 SKTVREFLEKNYDRKEPPATVEECVKLTVRSLLEV 200
>1ryp_F 20S proteasome; multicatalytic proteinase, protein degradation,
antigen processing, hydrolase, protease; 1.90A
{Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 1jd2_E*
1g65_E 2f16_E* 2fak_E* 2fny_E* 2gpl_E* 3d29_E* 3dy3_E*
3dy4_E* 3e47_E* 3gpj_E* 3gpt_E* 3gpw_E* 3hye_E* 3mg0_E*
3mg4_E* 3oeu_E* 3oev_E* 3okj_E* 3shj_E* ...
Length = 233
Score = 59.6 bits (145), Expect = 1e-10
Identities = 28/143 (19%), Positives = 54/143 (37%), Gaps = 9/143 (6%)
Query: 128 VIPVSSSILCTLAGNAADCVYWLHSLAKECKGYECKYRTGMTIRHAANLLVNMVRKYRTG 187
+I + +LAG A D + L ++C + + + A +LL + +K
Sbjct: 62 IIKCDEHMGLSLAGLAPDARVLSNYLRQQCNYSSLVFNRKLAVERAGHLLCDKAQKN--T 119
Query: 188 NHSSKIPNGLSFGTLMAAYDEILGPQLYMLDNTGLLIEGTKFCVGSGAEYAQAILDTDYR 247
P G+ L+ YD+ G L +G + E +G+ ++ A+ L+
Sbjct: 120 QSYGGRPYGVGL--LIIGYDK-SGAHLLEFQPSGNVTELYGTAIGARSQGAKTYLERTLD 176
Query: 248 ----PDLSEEEAYALATSAIYHA 266
D + +E AI +
Sbjct: 177 TFIKIDGNPDELIKAGVEAISQS 199
>3nzj_F Proteasome component C1; ubiquitin, protein degradation, N-terminal
nucleophilic HYDR 19S regulatory particle; HET: TY5 TRO
MES; 2.40A {Saccharomyces cerevisiae} PDB: 1z7q_G*
3nzw_F* 3nzx_F* 3un4_F* 3un8_F* 3bdm_F* 1fnt_G* 2zcy_F*
Length = 288
Score = 57.8 bits (140), Expect = 7e-10
Identities = 36/148 (24%), Positives = 61/148 (41%), Gaps = 8/148 (5%)
Query: 122 HNTSFQVIPVSSSILCTLAGNAADCVYWLHSLAKECKGYECKYRTGMTIRHAANLLVNMV 181
+ ++ V I C +G D + ++ +E ++ Y+T + I A+ L V
Sbjct: 61 PQKNVKIQVVDRHIGCVYSGLIPDGRHLVNRGREEAASFKKLYKTPIPIPAFADRLGQYV 120
Query: 182 RKYRTGNHSSKIPNGLSFGTLMAAYDEILGPQLYMLDNTGLLIEGTKFCVGSGAEYAQAI 241
+ + ++S P G+S + D+ G LYML+ +G G G + A+A
Sbjct: 121 QAH--TLYNSVRPFGVST--IFGGVDK-NGAHLYMLEPSGSYWGYKGAATGKGRQSAKAE 175
Query: 242 L---DTDYRPDLSEEEAYALATSAIYHA 266
L + LS EA A IY A
Sbjct: 176 LEKLVDHHPEGLSAREAVKQAAKIIYLA 203
Score = 28.1 bits (63), Expect = 3.5
Identities = 12/34 (35%), Positives = 21/34 (61%), Gaps = 1/34 (2%)
Query: 5 GTTTLGFRYPEGIILATDSRATANDLIVSQKLNK 38
GTT++G + +G++ A + T + L+V QK K
Sbjct: 34 GTTSIGIKCNDGVVFAVEKLIT-SKLLVPQKNVK 66
>1ryp_G 20S proteasome; multicatalytic proteinase, protein degradation,
antigen processing, hydrolase, protease; 1.90A
{Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 1jd2_F*
1g65_F 1vsy_G 2f16_F* 2fak_F* 2fny_F* 2gpl_F* 3d29_F*
3dy3_F* 3dy4_F* 3e47_F* 3gpj_F* 3gpt_F* 3gpw_F* 3hye_F*
3l5q_L 3mg0_F* 3mg4_F* 3okj_F* 3shj_F* ...
Length = 244
Score = 57.3 bits (139), Expect = 7e-10
Identities = 36/148 (24%), Positives = 61/148 (41%), Gaps = 8/148 (5%)
Query: 122 HNTSFQVIPVSSSILCTLAGNAADCVYWLHSLAKECKGYECKYRTGMTIRHAANLLVNMV 181
+ ++ V I C +G D + ++ +E ++ Y+T + I A+ L V
Sbjct: 57 PQKNVKIQVVDRHIGCVYSGLIPDGRHLVNRGREEAASFKKLYKTPIPIPAFADRLGQYV 116
Query: 182 RKYRTGNHSSKIPNGLSFGTLMAAYDEILGPQLYMLDNTGLLIEGTKFCVGSGAEYAQAI 241
+ + ++S P G+S + D+ G LYML+ +G G G + A+A
Sbjct: 117 QAH--TLYNSVRPFGVST--IFGGVDK-NGAHLYMLEPSGSYWGYKGAATGKGRQSAKAE 171
Query: 242 L---DTDYRPDLSEEEAYALATSAIYHA 266
L + LS EA A IY A
Sbjct: 172 LEKLVDHHPEGLSAREAVKQAAKIIYLA 199
Score = 28.0 bits (63), Expect = 3.2
Identities = 12/34 (35%), Positives = 21/34 (61%), Gaps = 1/34 (2%)
Query: 5 GTTTLGFRYPEGIILATDSRATANDLIVSQKLNK 38
GTT++G + +G++ A + T + L+V QK K
Sbjct: 30 GTTSIGIKCNDGVVFAVEKLIT-SKLLVPQKNVK 62
>2z3b_A ATP-dependent protease HSLV; N-terminal nucleophIle hydrolase;
2.50A {Bacillus subtilis} SCOP: d.153.1.4 PDB: 2z3a_A
1yyf_D* 3ty6_A
Length = 180
Score = 50.0 bits (119), Expect = 1e-07
Identities = 24/151 (15%), Positives = 45/151 (29%), Gaps = 16/151 (10%)
Query: 132 SSSILCTLAGNAADCVYWLHSLAKECKGYECKYRTGMTIRHAANLLVNMVRKYRTGNHSS 191
+ +L AG+ AD + + Y ++ AA L R +
Sbjct: 45 NGKVLAGFAGSVADAFTLFEKFEAKLEEYN------GNLKRAAVELAKEWRSDKV----- 93
Query: 192 KIPNGLSFGTLMAAYDEILGPQLYMLDNTGLLIEGTKFCVGSGAEYAQAILDTDYRPDLS 251
L M L + + +GSG YA A +
Sbjct: 94 -----LRKLEAMLIVMNQDTLLLVSGTGEVIEPDDGILAIGSGGNYALAAGRALKKHAGE 148
Query: 252 EEEAYALATSAIYHACRRDIHSGGCVRLYKI 282
A +A +A+ A +++ + L ++
Sbjct: 149 SMSASEIARAALETAGEICVYTNDQIILEEL 179
Score = 37.7 bits (87), Expect = 0.002
Identities = 15/113 (13%), Positives = 32/113 (28%), Gaps = 9/113 (7%)
Query: 5 GTTTLGFRYPEGIILATDSRATANDLIVS----QKLNKFCQSSL-----GDSCELLHPVY 55
TT ++ ++ D + T +V +K+ K + G +
Sbjct: 5 ATTIFAVQHKGRSAMSGDGQVTFGQAVVMKHTARKVRKLFNGKVLAGFAGSVADAFTLFE 64
Query: 56 TGGERCGQSYSQRSHCVAETQQDHFLSPPLSQSSQHIISGDSCELLHPVYTGG 108
+ + E ++ L + +I + LL TG
Sbjct: 65 KFEAKLEEYNGNLKRAAVELAKEWRSDKVLRKLEAMLIVMNQDTLLLVSGTGE 117
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 43.5 bits (102), Expect = 6e-05
Identities = 49/257 (19%), Positives = 79/257 (30%), Gaps = 68/257 (26%)
Query: 50 LLHPVYTGGERCGQSYSQRSHCVAETQQDHFLSPPLSQSSQHIISGDSCELLHPVYTGGE 109
L H G S +A Q+ F L + ++ + D E P E
Sbjct: 11 LSH----GSLEHVLLVPTASFFIASQLQEQFNK-ILPEPTEGFAADD--EPTTPA----E 59
Query: 110 RCGPFSQ--SSTVPHNTSFQVIPVSSSILCT-----LAGNAADCVYWLHSLAKECKGYE- 161
G F SS V + Q V + L L GN D +H+LA +
Sbjct: 60 LVGKFLGYVSSLVEPSKVGQFDQVLNLCLTEFENCYLEGN--D----IHALAAKLLQEND 113
Query: 162 -CKYRTGMTIRH--AANLLVNMVRKYRTGNHSSKIPNGLSFG--TLMAAYDEILGPQLYM 216
+T I++ A ++ R + +S + + G L+A I G Q
Sbjct: 114 TTLVKTKELIKNYITARIMAK--RPF-DKKSNSALFRAVGEGNAQLVA----IFGGQ--- 163
Query: 217 LDNTGLLIEGTKFCVGSGAEY---AQAILDTDYRP---DLSEEEAYALATSAIYHACRRD 270
G+ +Y + + T Y DL + A L+
Sbjct: 164 ---------------GNTDDYFEELRDLYQT-YHVLVGDLIKFSAETLSELIRTTLDAEK 207
Query: 271 IHSGGCVRLYKINGQGW 287
+ + G +N W
Sbjct: 208 VFTQG------LNILEW 218
Score = 33.9 bits (77), Expect = 0.081
Identities = 40/301 (13%), Positives = 78/301 (25%), Gaps = 129/301 (42%)
Query: 38 KFCQSSLGDSCELLH-----P----VYTGGERCGQSYSQR--SHCVAETQQDHFLSPPL- 85
+ + G S +L P ++ GGE+ G+ + + + +
Sbjct: 1651 NHFKDTYGFS--ILDIVINNPVNLTIHFGGEK-GKRIRENYSAMIFETIVDGKLKTEKIF 1707
Query: 86 ----SQSSQHIISGDSCELLHPVYTGGERCGPFSQSSTVPHNTSFQVIP----VSSSIL- 136
S+ + + L +T Q P + +
Sbjct: 1708 KEINEHSTSYTFRSEKGLLSATQFT--------------------Q--PALTLMEKAAFE 1745
Query: 137 -----------CTLAGNAADCVYWLHSLAKECKGYECKY-----RTG-MTIRHAANLLVN 179
T AG HSL G E Y M+I ++
Sbjct: 1746 DLKSKGLIPADATFAG---------HSL-----G-E--YAALASLADVMSIESLVEVV-- 1786
Query: 180 MVRKYRTGNHSSKIPNGLSFGTLMAAYDEILGPQLYMLDNTGLLIEGTKFCVGSGAEYAQ 239
YR G++ + DE+ M+ I + E Q
Sbjct: 1787 ---FYR----------GMTMQVAVPR-DELGRSNYGMIA-----INPGRVAASFSQEALQ 1827
Query: 240 AILDTDYRPDLSEEEAYALATSAIYHACRRDIHSGGCVRL--YKINGQGWQQVLSRDVKD 297
+++ + + +G V + Y N + Q V + D++
Sbjct: 1828 YVVE-----RVGKR-------------------TGWLVEIVNY--NVENQQYVAAGDLRA 1861
Query: 298 I 298
+
Sbjct: 1862 L 1862
Score = 31.9 bits (72), Expect = 0.35
Identities = 33/161 (20%), Positives = 53/161 (32%), Gaps = 58/161 (36%)
Query: 61 CGQS---YSQR----SHCVAETQQDHFL---SP---PLSQSSQHIISGD---------SC 98
QS +S+R S+ FL SP L + +I+ D +
Sbjct: 402 LDQSRIPFSERKLKFSNR--------FLPVASPFHSHLLVPASDLINKDLVKNNVSFNAK 453
Query: 99 ELLHPVY---TGGERCGPFSQSSTVPHNTSFQVI--PV---------SSSILCTLAGNAA 144
++ PVY G + S ++ +I PV ++ IL G A+
Sbjct: 454 DIQIPVYDTFDGSDLR---VLSGSISERIVDCIIRLPVKWETTTQFKATHILDFGPGGAS 510
Query: 145 DCVYWLHSL-AKECKGYECKYRTGMTIRHAANLLVNMVRKY 184
L L + G TG+ + A L +N Y
Sbjct: 511 G----LGVLTHRNKDG------TGVRVIVAGTLDINPDDDY 541
>1g3k_A ATP-dependent protease HSLV; hydrolase; 1.90A {Haemophilus
influenzae} SCOP: d.153.1.4 PDB: 1g3i_G 1jjw_A 1kyi_G*
1ofh_G* 1ofi_G* 1e94_A* 1g4a_B* 1g4b_M 1hqy_A* 1ht1_C*
1ht2_A* 1ned_A
Length = 174
Score = 41.5 bits (97), Expect = 8e-05
Identities = 24/170 (14%), Positives = 55/170 (32%), Gaps = 18/170 (10%)
Query: 115 SQSSTVPHNTSFQVIPVSS-SILCTLAGNAADCVYWLHSLAKECKGYECKYRTGMTIRHA 173
S +TV + +V + + +L AG AD ++ + ++ + +
Sbjct: 21 SLGNTVMKGNARKVRRLYNGKVLAGFAGGTADAFTLFELFERKLEMHQ------GHLLKS 74
Query: 174 ANLLVNMVRKYRTGNHSSKIPNGLSFGTLMAAYDEILGPQLYMLDNTGLLIEGTKFCVGS 233
A L R R ++ DE + + + E +GS
Sbjct: 75 AVELAKDWRTDRALRK---------LEAMLIVADEKESLIITGIGDVVQPEEDQILAIGS 125
Query: 234 GAEYAQAILDTDYRPDLSEEEAYALATSAIYHACRRDIHSGGCVRLYKIN 283
G YA + + +E A+ + ++ A + + + ++
Sbjct: 126 GGNYALS--AARALVENTELSAHEIVEKSLRIAGDICVFTNTNFTIEELP 173
Score = 35.3 bits (81), Expect = 0.009
Identities = 15/111 (13%), Positives = 31/111 (27%), Gaps = 8/111 (7%)
Query: 6 TTTLGFRYPEGIILATDSRATANDLIVSQKLNK----FCQSSL----GDSCELLHPVYTG 57
TT + R +++ D + + + ++ K + L G + +
Sbjct: 1 TTIVSVRRNGQVVVGGDGQVSLGNTVMKGNARKVRRLYNGKVLAGFAGGTADAFTLFELF 60
Query: 58 GERCGQSYSQRSHCVAETQQDHFLSPPLSQSSQHIISGDSCELLHPVYTGG 108
+ E +D L + +I D E L G
Sbjct: 61 ERKLEMHQGHLLKSAVELAKDWRTDRALRKLEAMLIVADEKESLIITGIGD 111
>1m4y_A ATP-dependent protease HSLV; N-terminal catalytic threonine
residue, hydrolase; 2.10A {Thermotoga maritima} SCOP:
d.153.1.4
Length = 171
Score = 40.0 bits (93), Expect = 3e-04
Identities = 29/163 (17%), Positives = 51/163 (31%), Gaps = 21/163 (12%)
Query: 115 SQSSTVPHNTSFQVIPVSS-SILCTLAGNAADCVYWLHSLAKECKGYECKYRTGMTIRHA 173
+ STV + +V + +L AG+ AD + + + + + A
Sbjct: 21 TFGSTVLKGNARKVRKLGEGKVLAGFAGSVADAMTLFDRFEAKLREWG------GNLTKA 74
Query: 174 ANLLVNMVRKYRTGNHSSKIPNGLSFGTLMAAYDEILGPQLYMLDNTGLLIEGTKFCVGS 233
A L R R L + + + + + + +GS
Sbjct: 75 AVELAKDWRTDRV----------LRRLEALLLVADKENIFIISGNGEVIQPDDDAAAIGS 124
Query: 234 GAEYAQAILDTDYR-PDLSEEEAYALATSAIYHACRRDIHSGG 275
G YA A R DLS E + A+ A I++
Sbjct: 125 GGPYALAAAKALLRNTDLSARE---IVEKAMTIAGEICIYTNQ 164
Score = 33.4 bits (76), Expect = 0.049
Identities = 7/33 (21%), Positives = 12/33 (36%)
Query: 6 TTTLGFRYPEGIILATDSRATANDLIVSQKLNK 38
TT L R ++ D + T ++ K
Sbjct: 1 TTILVVRRNGQTVMGGDGQVTFGSTVLKGNARK 33
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna; HET:
CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 32.2 bits (72), Expect = 0.086
Identities = 10/29 (34%), Positives = 11/29 (37%), Gaps = 9/29 (31%)
Query: 239 QAI--LDTD---YRPDLSEEEAYALATSA 262
QA+ L Y D A ALA A
Sbjct: 20 QALKKLQASLKLYADD----SAPALAIKA 44
>1laj_A Capsid protein; anti-parallel beta sheets, jelly roll, T=3
icosahedral virus, protein-RNA complex, disulphide
bridge, icosahedral virus; 3.40A {Tomato aspermy virus}
SCOP: b.121.4.5
Length = 217
Score = 29.5 bits (65), Expect = 1.1
Identities = 19/81 (23%), Positives = 35/81 (43%), Gaps = 3/81 (3%)
Query: 1 MFITGTTTLGFRYPEGIILATDSRATAND---LIVSQKLNKFCQSSLGDSCELLHPVYTG 57
M GT R G ++ +TA D L ++Q++N+ + + L HP +
Sbjct: 1 MAQNGTGGGSRRPRRGRRNNNNNNSTARDKALLALTQQVNRLANIASSSAPSLQHPTFIA 60
Query: 58 GERCGQSYSQRSHCVAETQQD 78
++C Y+ S V T+ +
Sbjct: 61 SKKCRAGYTYTSLDVRPTRTE 81
>1f15_A Coat protein; beta barrel, icosahedral virus; 3.20A {Cucumber
mosaic virus} SCOP: b.121.4.5
Length = 218
Score = 28.7 bits (63), Expect = 2.1
Identities = 15/64 (23%), Positives = 30/64 (46%), Gaps = 2/64 (3%)
Query: 20 ATDSRATANDLIVSQKLNKFCQSSLGDSCELLHPVYTGGERCGQSYSQRSHCV--AETQQ 77
+ S A AN ++SQ+L++ ++ + HP + G ERC Y+ S + + +
Sbjct: 23 SAPSSADANFRVLSQQLSRLNKTLAAGRPTINHPTFVGSERCRPGYTFTSITLKPPKIDR 82
Query: 78 DHFL 81
+
Sbjct: 83 GSYY 86
>3pl2_A Sugar kinase, ribokinase family; PFKB PFAM motif, inositol
phosphate metabolism, ribokinase-L structural genomics;
HET: MSE CIT; 1.89A {Corynebacterium glutamicum}
Length = 319
Score = 27.9 bits (63), Expect = 3.9
Identities = 14/39 (35%), Positives = 17/39 (43%), Gaps = 7/39 (17%)
Query: 235 AEYAQA-----ILDTDYRPDL--SEEEAYALATSAIYHA 266
+A I D DYRP S EEA A A+ H+
Sbjct: 158 ILTTRANRRHTIFDLDYRPMFWESPEEATKQAEWALQHS 196
>2qcv_A Putative 5-dehydro-2-deoxygluconokinase; structural genomic center
for structural genomics, JCSG, protein structure INI
PSI-2; HET: PGE; 1.90A {Bacillus halodurans c-125}
Length = 332
Score = 27.5 bits (62), Expect = 5.1
Identities = 10/54 (18%), Positives = 18/54 (33%), Gaps = 7/54 (12%)
Query: 220 TGLLIEGTKFCVGSGAEYAQA-----ILDTDYRPDL--SEEEAYALATSAIYHA 266
T L ++ V A+ + + DYRP + EE + +
Sbjct: 147 TALSKSPSREAVLKAIRLAKRNDVKVVFELDYRPYSWETPEETAVYYSLVAEQS 200
>3dkw_A DNR protein; CRP-FNR, HTH, beta barrel, dimerization helix,
homodimer, transcription regulator; 3.60A {Pseudomonas
aeruginosa}
Length = 227
Score = 27.2 bits (61), Expect = 6.3
Identities = 11/58 (18%), Positives = 22/58 (37%), Gaps = 14/58 (24%)
Query: 249 DLSEEEAYALATSAIYHACRRD---IHSG-----------GCVRLYKINGQGWQQVLS 292
LS + L S+ + G GCV++Y++ +G +++L
Sbjct: 19 PLSPVQLQELLASSDLVNLDKGAYVFRQGEPAHAFYYLISGCVKIYRLTPEGQEKILE 76
>2erj_C Cytokine receptor common gamma chain; immune system-cytok complex;
HET: NAG FUC BMA; 3.00A {Homo sapiens} SCOP: b.1.2.1
b.1.2.1
Length = 247
Score = 27.1 bits (59), Expect = 6.8
Identities = 10/53 (18%), Positives = 19/53 (35%), Gaps = 1/53 (1%)
Query: 115 SQSSTVPHNTSFQVIPVSSSILCTLAGNAADC-VYWLHSLAKECKGYECKYRT 166
+ +T VIP + L + + + W + C + +YRT
Sbjct: 122 RRQATQMLKLQNLVIPWAPENLTLHKLSESQLELNWNNRFLNHCLEHLVQYRT 174
>2d9v_A Pleckstrin homology domain-containing protein family B member 1; PH
domain, phret1, structural genomics, NPPSFA; NMR {Mus
musculus}
Length = 130
Score = 26.5 bits (58), Expect = 6.9
Identities = 9/46 (19%), Positives = 13/46 (28%)
Query: 108 GERCGPFSQSSTVPHNTSFQVIPVSSSILCTLAGNAADCVYWLHSL 153
G+ C + V S L A D + W +L
Sbjct: 64 GQECQDVQPPEGRSRDGLLTVNLREGSRLHLCAETRDDAIAWKTAL 109
>3fx3_A Cyclic nucleotide-binding protein; helix_TURN_helix, CAMP
regulatory protein, structural genomi 2, protein
structure initiative; 2.20A {Ruegeria pomeroyi} PDB:
3h3z_A*
Length = 237
Score = 26.9 bits (60), Expect = 8.8
Identities = 12/58 (20%), Positives = 23/58 (39%), Gaps = 14/58 (24%)
Query: 249 DLSEEEAYALATSAIYHACRRD---IHSG-----------GCVRLYKINGQGWQQVLS 292
L E+ AL + A++ + R G V+L+++ G + V+S
Sbjct: 21 SLPEQHVDALLSQAVWRSYDRGETLFLQEEKAQAIHVVIDGWVKLFRMTPTGSEAVVS 78
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.319 0.135 0.415
Gapped
Lambda K H
0.267 0.0790 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 4,672,311
Number of extensions: 264222
Number of successful extensions: 793
Number of sequences better than 10.0: 1
Number of HSP's gapped: 716
Number of HSP's successfully gapped: 109
Length of query: 312
Length of database: 6,701,793
Length adjustment: 93
Effective length of query: 219
Effective length of database: 4,105,140
Effective search space: 899025660
Effective search space used: 899025660
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 57 (25.6 bits)