RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy14210
(312 letters)
>d1iruh_ d.153.1.4 (H:) Proteasome beta subunit (catalytic) {Cow
(Bos taurus) [TaxId: 9913]}
Length = 202
Score = 110 bits (275), Expect = 8e-30
Identities = 45/181 (24%), Positives = 80/181 (44%), Gaps = 10/181 (5%)
Query: 115 SQSSTVPHNTSFQVIPVSSSILCTLAGNAADCVYWLHSLAKECKGYECKYRTGMTIRHAA 174
+ S + + + ++ P+ I C +G+AAD ++ + + + + AA
Sbjct: 21 TTGSYIANRVTDKLTPIHDRIFCCRSGSAADTQAVADAVTYQLGFHSIELNEPPLVHTAA 80
Query: 175 NLLVNMVRKYRTGNHSSKIPNGLSFGTLMAAYDEILGPQLYMLDNTGLLIEGTKFCVGSG 234
+L M +Y L G ++A +D G Q+Y + G+++ + GSG
Sbjct: 81 SLFKEMCYRY---------REDLMAGIIIAGWDPQEGGQVYSVPMGGMMVRQSFAIGGSG 131
Query: 235 AEYAQAILDTDYRPDLSEEEAYALATSAIYHACRRDIHSGGCVRLYKINGQGWQ-QVLSR 293
+ Y +D YR +++EE +A+ A RD SGG +RL I G + QVL
Sbjct: 132 SSYIYGYVDATYREGMTKEECLQFTANALALAMERDGSSGGVIRLAAIAESGVERQVLLG 191
Query: 294 D 294
D
Sbjct: 192 D 192
Score = 44.3 bits (104), Expect = 4e-06
Identities = 10/33 (30%), Positives = 18/33 (54%)
Query: 6 TTTLGFRYPEGIILATDSRATANDLIVSQKLNK 38
TT + ++ G++L DSR T I ++ +K
Sbjct: 1 TTIMAVQFDGGVVLGADSRTTTGSYIANRVTDK 33
>d1rypl_ d.153.1.4 (L:) Proteasome beta subunit (catalytic) {Baker's
yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 212
Score = 105 bits (263), Expect = 7e-28
Identities = 65/190 (34%), Positives = 106/190 (55%), Gaps = 8/190 (4%)
Query: 115 SQSSTVPHNTSFQVIPVSSSILCTLAGNAADCVYWLHSLAKECKGYECKYRTGMTIRHAA 174
+ + V T +VI ++ +L T+AG AADC +W L +C+ +E + + +++ A+
Sbjct: 21 TAGNWVASQTVKRVIEINPFLLGTMAGGAADCQFWETWLGSQCRLHELREKERISVAAAS 80
Query: 175 NLLVNMVRKYRTGNHSSKIPNGLSFGTLMAAYDEILGPQLYMLDNTGLLIEGTKFCVGSG 234
+L N+V +Y+ GLS GT++ Y GP +Y +D+ G ++G FCVGSG
Sbjct: 81 KILSNLVYQYK--------GAGLSMGTMICGYTRKEGPTIYYVDSDGTRLKGDIFCVGSG 132
Query: 235 AEYAQAILDTDYRPDLSEEEAYALATSAIYHACRRDIHSGGCVRLYKINGQGWQQVLSRD 294
+A +LD++Y+ DLS E+A L +I A RD +SGG V LY + GW + D
Sbjct: 133 QTFAYGVLDSNYKWDLSVEDALYLGKRSILAAAHRDAYSGGSVNLYHVTEDGWIYHGNHD 192
Query: 295 VKDIYNDRKE 304
V +++ KE
Sbjct: 193 VGELFWKVKE 202
Score = 47.5 bits (112), Expect = 5e-07
Identities = 33/178 (18%), Positives = 58/178 (32%), Gaps = 15/178 (8%)
Query: 6 TTTLGFRYPEGIILATDSRATANDLIVSQKLNKFCQSSLGDSCELLHPVYTGGERCGQSY 65
TTTL FR+ GII+A DSRATA + + SQ + + + ++P G G +
Sbjct: 1 TTTLAFRFQGGIIVAVDSRATAGNWVASQTVKRVIE---------INPFLLGTMAGGAAD 51
Query: 66 SQRSHCVAETQQDHFLSPPLSQSSQHIISGDSCELLHPVYTGGERCGPFSQSSTVPHNTS 125
Q +Q + S S L++ G G T +
Sbjct: 52 CQFWETWLGSQCRLHELREKERISVAAASKILSNLVYQYKGAGLSMGTMICGYTRKEGPT 111
Query: 126 FQVIPVSSSILCTLAGNAADCVYWLHSLAKECKGYECKYRTGMTIRHAANLLVNMVRK 183
+ + L + + + Y+ +++ A L +
Sbjct: 112 IYYVDSDGTRLKGDIFCVGSGQTFAYGVLDSN------YKWDLSVEDALYLGKRSILA 163
>d1irul_ d.153.1.4 (L:) Proteasome beta subunit (catalytic) {Cow
(Bos taurus) [TaxId: 9913]}
Length = 201
Score = 101 bits (252), Expect = 2e-26
Identities = 72/185 (38%), Positives = 108/185 (58%), Gaps = 9/185 (4%)
Query: 115 SQSSTVPHNTSFQVIPVSSSILCTLAGNAADCVYWLHSLAKECKGYECKYRTGMTIRHAA 174
+ + + T +VI ++ +L T+AG AADC +W LA++C+ YE + + +++ A+
Sbjct: 21 TAGAYIASQTVKKVIEINPYLLGTMAGGAADCSFWERLLARQCRIYELRNKERISVAAAS 80
Query: 175 NLLVNMVRKYRTGNHSSKIPNGLSFGTLMAAYDEILGPQLYMLDNTGLLIEGTKFCVGSG 234
LL NMV +Y+ GLS GT++ +D+ GP LY +D+ G I G F VGSG
Sbjct: 81 KLLANMVYQYK--------GMGLSMGTMICGWDKR-GPGLYYVDSEGNRISGATFSVGSG 131
Query: 235 AEYAQAILDTDYRPDLSEEEAYALATSAIYHACRRDIHSGGCVRLYKINGQGWQQVLSRD 294
+ YA ++D Y DL E+AY LA AIY A RD +SGG V LY + GW +V S +
Sbjct: 132 SVYAYGVMDRGYSYDLEVEQAYDLARRAIYQATYRDAYSGGAVNLYHVREDGWIRVSSDN 191
Query: 295 VKDIY 299
V D++
Sbjct: 192 VADLH 196
Score = 45.9 bits (108), Expect = 1e-06
Identities = 31/178 (17%), Positives = 57/178 (32%), Gaps = 16/178 (8%)
Query: 6 TTTLGFRYPEGIILATDSRATANDLIVSQKLNKFCQSSLGDSCELLHPVYTGGERCGQSY 65
TTTL F++ G+I+A DSRATA I SQ + K + + +
Sbjct: 1 TTTLAFKFRHGVIVAADSRATAGAYIASQTVKKVIE--INPYLLGTMAGGAADCSFWERL 58
Query: 66 SQRSHCVAETQQDHFLSPPLSQSSQHIISGDSCELLHPVYTGGERCGPFSQSSTVPHNTS 125
R + E + ++ +S+ + + + G CG P
Sbjct: 59 LARQCRIYELRNKE--RISVAAASKLLANMVYQYKGMGLSMGTMICG---WDKRGPGLYY 113
Query: 126 FQVIPVSSSILCTLAGNAADCVYWLHSLAKECKGYECKYRTGMTIRHAANLLVNMVRK 183
S G+ + Y + + Y + + A +L + +
Sbjct: 114 VDSEGNRISGATFSVGSGSVYAYGV---------MDRGYSYDLEVEQAYDLARRAIYQ 162
>d1ryph_ d.153.1.4 (H:) Proteasome beta subunit (catalytic) {Baker's
yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 205
Score = 100 bits (251), Expect = 3e-26
Identities = 34/177 (19%), Positives = 79/177 (44%), Gaps = 10/177 (5%)
Query: 115 SQSSTVPHNTSFQVIPVSSSILCTLAGNAADCVYWLHSLAKECKGYECKYRTGMTIRHAA 174
+ + + + + ++ V I C +G+AAD + + Y +Y T + AA
Sbjct: 30 TTGAYIANRVTDKLTRVHDKIWCCRSGSAADTQAIADIVQYHLELYTSQYGT-PSTETAA 88
Query: 175 NLLVNMVRKYRTGNHSSKIPNGLSFGTLMAAYDEILGPQLYMLDNTGLLIEGTKFCVGSG 234
++ + + + + L+ G ++A YD+ ++Y + G + + GSG
Sbjct: 89 SVFKELCYENK---------DNLTAGIIVAGYDDKNKGEVYTIPLGGSVHKLPYAIAGSG 139
Query: 235 AEYAQAILDTDYRPDLSEEEAYALATSAIYHACRRDIHSGGCVRLYKINGQGWQQVL 291
+ + D ++R ++S+EE ++ A + D SGG +R+ + G ++++
Sbjct: 140 STFIYGYCDKNFRENMSKEETVDFIKHSLSQAIKWDGSSGGVIRMVVLTAAGVERLI 196
Score = 45.9 bits (108), Expect = 2e-06
Identities = 10/38 (26%), Positives = 19/38 (50%)
Query: 4 TGTTTLGFRYPEGIILATDSRATANDLIVSQKLNKFCQ 41
G + + + +G+IL DSR T I ++ +K +
Sbjct: 8 LGASIMAVTFKDGVILGADSRTTTGAYIANRVTDKLTR 45
>d1rypi_ d.153.1.4 (I:) Proteasome beta subunit (catalytic) {Baker's
yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 222
Score = 99.9 bits (248), Expect = 1e-25
Identities = 41/190 (21%), Positives = 73/190 (38%), Gaps = 10/190 (5%)
Query: 115 SQSSTVPHNTSFQVIPVSSSILCTLAGNAADCVYWLHSLAKECKGYECKYRTGMTIRHAA 174
+Q V ++ +S I C AG AAD + + + + A
Sbjct: 21 TQGPIVADKNCAKLHRISPKIWCAGAGTAADTEAVTQLIGSNIELHSLYTSREPRVVSAL 80
Query: 175 NLLVNMVRKYRTGNHSSKIPNGLSFGTLMAAYDEILGPQLYMLDNTGLLIEGTKFCVGSG 234
+L + KY+ ++A D G L+ + G G +GSG
Sbjct: 81 QMLKQHLFKYQGHIG---------AYLIVAGVDP-TGSHLFSIHAHGSTDVGYYLSLGSG 130
Query: 235 AEYAQAILDTDYRPDLSEEEAYALATSAIYHACRRDIHSGGCVRLYKINGQGWQQVLSRD 294
+ A A+L++ ++ DL++EEA LA+ AI D+ SG V + + + L
Sbjct: 131 SLAAMAVLESHWKQDLTKEEAIKLASDAIQAGIWNDLGSGSNVDVCVMEIGKDAEYLRNY 190
Query: 295 VKDIYNDRKE 304
+ + K+
Sbjct: 191 LTPNVREEKQ 200
Score = 42.8 bits (100), Expect = 2e-05
Identities = 9/36 (25%), Positives = 21/36 (58%)
Query: 6 TTTLGFRYPEGIILATDSRATANDLIVSQKLNKFCQ 41
TT +G ++ G+++A D+R+T ++ + K +
Sbjct: 1 TTIVGVKFNNGVVIAADTRSTQGPIVADKNCAKLHR 36
>d1rypk_ d.153.1.4 (K:) Proteasome beta subunit (catalytic) {Baker's
yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 198
Score = 96.8 bits (240), Expect = 1e-24
Identities = 36/177 (20%), Positives = 73/177 (41%), Gaps = 7/177 (3%)
Query: 115 SQSSTVPHNTSFQVIPVSSSILCTLAGNAADCVYWLHSLAKECKGYECKYRTGMTIRHAA 174
++ +V ++ + +S L + AG A D V + + + Y + ++ + +
Sbjct: 22 TRGISVLKDSDDKTRQLSPHTLMSFAGEAGDTVQFAEYIQANIQLYSIREDYELSPQAVS 81
Query: 175 NLLVNMVRKYRTGNHSSKIPNGLSFGTLMAAYD-EILGPQLYMLDNTGLLIEGTKFCVGS 233
+ + + K S+ P ++ + YD + P+LY +D G +E G
Sbjct: 82 SFVRQELAKSI----RSRRPYQVNVL--IGGYDKKKNKPELYQIDYLGTKVELPYGAHGY 135
Query: 234 GAEYAQAILDTDYRPDLSEEEAYALATSAIYHACRRDIHSGGCVRLYKINGQGWQQV 290
Y ++LD YRPD++ EE L + +R V + ++ G +QV
Sbjct: 136 SGFYTFSLLDHHYRPDMTTEEGLDLLKLCVQELEKRMPMDFKGVIVKIVDKDGIRQV 192
Score = 40.1 bits (93), Expect = 1e-04
Identities = 9/36 (25%), Positives = 15/36 (41%)
Query: 6 TTTLGFRYPEGIILATDSRATANDLIVSQKLNKFCQ 41
LG R + +ILA+ T ++ +K Q
Sbjct: 2 DIILGIRVQDSVILASSKAVTRGISVLKDSDDKTRQ 37
>d1yarh1 d.153.1.4 (H:1-203) Proteasome beta subunit (catalytic)
{Archaeon Thermoplasma acidophilum [TaxId: 2303]}
Length = 203
Score = 95.2 bits (236), Expect = 4e-24
Identities = 39/185 (21%), Positives = 75/185 (40%), Gaps = 11/185 (5%)
Query: 115 SQSSTVPHNTSFQVIPVSSSILCTLAGNAADCVYWLHSLAKECKGYECKYRTGMTIRHAA 174
+ + + H ++ + + T+AG D + + E + Y + R M I A
Sbjct: 21 TMENFIMHKNGKKLFQIDTYTGMTIAGLVGDAQVLVRYMKAELELYRLQRRVNMPIEAVA 80
Query: 175 NLLVNMVRKYRTGNHSSKIPNGLSFGTLMAAYDEILGPQLYMLDNTGLLIEGTKFCVGSG 234
LL NM+ + + L+ D P ++ +D G +E GSG
Sbjct: 81 TLLSNMLNQVK--------YMPYMVQLLVGGIDT--APHVFSIDAAGGSVEDIYASTGSG 130
Query: 235 AEYAQAILDTDYRPDLSEEEAYALATSAIYHACRRDIHSGGCVRLYKI-NGQGWQQVLSR 293
+ + +L++ Y ++ +E L AI A +RD SGG + + I G+ Q+ +
Sbjct: 131 SPFVYGVLESQYSEKMTVDEGVDLVIRAISAAKQRDSASGGMIDVAVITRKDGYVQLPTD 190
Query: 294 DVKDI 298
++
Sbjct: 191 QIESR 195
Score = 45.9 bits (108), Expect = 1e-06
Identities = 30/184 (16%), Positives = 59/184 (32%), Gaps = 29/184 (15%)
Query: 6 TTTLGFRYPEGIILATDSRATANDLIVSQKLNKFCQSSLGDSCELLHPVYTGGERCGQSY 65
TTT+G + +I+AT+ R T + I+ + K Q + + G + Y
Sbjct: 1 TTTVGITLKDAVIMATERRVTMENFIMHKNGKKLFQ--IDTYTGMTIAGLVGDAQVLVRY 58
Query: 66 SQRSHCVAETQQDHFLSPPLSQSSQHIISGDSCELLHPVYTGGERCGPFSQSSTV----- 120
+ + Q+ + ++ L + P+ V
Sbjct: 59 MKAELELYRLQRRVNMPI------------EAVATLLSNMLNQVKYMPYMVQLLVGGIDT 106
Query: 121 -PHNTSFQVIPVSSSILCTLAGNAADCVYWLHSLAKECKGYECKYRTGMTIRHAANLLVN 179
PH S S + G+ + VY + E +Y MT+ +L++
Sbjct: 107 APHVFSIDAAGGSVEDIYASTGSGSPFVYGV---------LESQYSEKMTVDEGVDLVIR 157
Query: 180 MVRK 183
+
Sbjct: 158 AISA 161
>d1q5qh_ d.153.1.4 (H:) Proteasome beta subunit (catalytic)
{Rhodococcus erythropolis [TaxId: 1833]}
Length = 224
Score = 93.8 bits (232), Expect = 2e-23
Identities = 45/194 (23%), Positives = 67/194 (34%), Gaps = 9/194 (4%)
Query: 115 SQSSTVPHNTSFQVIPVSSSILCTLAGNAADCVYWLHSLAKECKGYECKYRTGMTIRHAA 174
+Q + + +V +AG A + + A E + YE +T A
Sbjct: 21 TQGNLIASRDVEKVYVTDEYSAAGIAGTAGIAIELVRLFAVELEHYEKIEGVPLTFDGKA 80
Query: 175 NLLVNMVRKYRTGNHSSKIPNGLSFGTLMAAYDEILGPQLYMLDNTGLLIE--GTKFCVG 232
N L +MVR L G + A DE ++ D G E VG
Sbjct: 81 NRLASMVRGNLGAAMQGLAVVPLLVGYDLDADDESRAGRIVSYDVVGGRYEERAGYHAVG 140
Query: 233 SGAEYAQAILDTDYRPDLSEEEAYALATSAIYHACRRDIHSGGCVR-------LYKINGQ 285
SG+ +A++ L Y PD EE A A ++Y A D +GG I
Sbjct: 141 SGSLFAKSALKKIYSPDSDEETALRAAIESLYDAADDDSATGGPDLTRGIYPTAVTITQA 200
Query: 286 GWQQVLSRDVKDIY 299
G V ++
Sbjct: 201 GAVHVSEETTSELA 214
Score = 42.5 bits (99), Expect = 2e-05
Identities = 14/33 (42%), Positives = 20/33 (60%)
Query: 6 TTTLGFRYPEGIILATDSRATANDLIVSQKLNK 38
TT + Y G++LA D RAT +LI S+ + K
Sbjct: 1 TTIVALTYKGGVLLAGDRRATQGNLIASRDVEK 33
>d1j2qh_ d.153.1.4 (H:) Proteasome beta subunit (catalytic)
{Archaeon Archaeoglobus fulgidus [TaxId: 2234]}
Length = 202
Score = 92.9 bits (230), Expect = 3e-23
Identities = 44/191 (23%), Positives = 80/191 (41%), Gaps = 10/191 (5%)
Query: 115 SQSSTVPHNTSFQVIPVSSSILCTLAGNAADCVYWLHSLAKECKGYECKYRTGMTIRHAA 174
+ + + + ++ ++ + T AG+ D + + E YE + T+R A
Sbjct: 21 TMGNFIASKAAKKIYQIADRMAMTTAGSVGDAQFLARIIKIEANLYEIRRERKPTVRAIA 80
Query: 175 NLLVNMVRKYRTGNHSSKIPNGLSFGTLMAAYDEILGPQLYMLDNTGLLIEGTKF-CVGS 233
L N++ YR + L+ + G +Y +D G IE GS
Sbjct: 81 TLTSNLLNSYRYFPY---------LVQLLIGGIDSEGKSIYSIDPIGGAIEEKDIVATGS 131
Query: 234 GAEYAQAILDTDYRPDLSEEEAYALATSAIYHACRRDIHSGGCVRLYKINGQGWQQVLSR 293
G+ A +L+ + P++ +EA LA AIY A +RD SG + + KI + Q
Sbjct: 132 GSLTAYGVLEDRFTPEIGVDEAVELAVRAIYSAMKRDSASGDGIDVVKITEDEFYQYSPE 191
Query: 294 DVKDIYNDRKE 304
+V+ I ++
Sbjct: 192 EVEQILAKFRK 202
Score = 43.3 bits (101), Expect = 1e-05
Identities = 14/36 (38%), Positives = 22/36 (61%)
Query: 6 TTTLGFRYPEGIILATDSRATANDLIVSQKLNKFCQ 41
TTT+G +G+++AT+ RAT + I S+ K Q
Sbjct: 1 TTTVGLVCKDGVVMATEKRATMGNFIASKAAKKIYQ 36
>d1ryp2_ d.153.1.4 (2:) Proteasome beta subunit (catalytic) {Baker's
yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 233
Score = 92.9 bits (230), Expect = 6e-23
Identities = 27/184 (14%), Positives = 52/184 (28%), Gaps = 8/184 (4%)
Query: 115 SQSSTVPHNTSFQVIPVSSSILCTLAGNAADCVYWLHSLAKECKGYECKYRTGMTIRH-A 173
S S + N ++IPV + + ++G+ +D + L
Sbjct: 29 SYGSLLRFNGVERLIPVGDNTVVGISGDISDMQHIERLLKDLVTENAYDNPLADAEEALE 88
Query: 174 ANLLVNMVRKYRTGNHSSKIPNGLSFGTLMAAYDEILGPQLYMLDNTGLLIEGTKFCVGS 233
+ + + S P + ++A L ++ G+ G
Sbjct: 89 PSYIFEYLATVMYQRRSKMNPLWNAI--IVAGVQSNGDQFLRYVNLLGVTYSSPTLATGF 146
Query: 234 GAEYAQAILDTDYR-----PDLSEEEAYALATSAIYHACRRDIHSGGCVRLYKINGQGWQ 288
GA A +L P + + A +A+ RD S L I+
Sbjct: 147 GAHMANPLLRKVVDRESDIPKTTVQVAEEAIVNAMRVLYYRDARSSRNFSLAIIDKNTGL 206
Query: 289 QVLS 292
Sbjct: 207 TFKK 210
Score = 46.3 bits (109), Expect = 1e-06
Identities = 9/39 (23%), Positives = 20/39 (51%)
Query: 3 ITGTTTLGFRYPEGIILATDSRATANDLIVSQKLNKFCQ 41
+TGT+ + +Y G+I+A D+ + L+ + +
Sbjct: 6 VTGTSVISMKYDNGVIIAADNLGSYGSLLRFNGVERLIP 44
>d1irue_ d.153.1.4 (E:) Proteasome alpha subunit (non-catalytic)
{Cow (Bos taurus) [TaxId: 9913]}
Length = 234
Score = 92.0 bits (228), Expect = 1e-22
Identities = 30/181 (16%), Positives = 70/181 (38%), Gaps = 3/181 (1%)
Query: 115 SQSSTVPHNTSFQVIPVSSSILCTLAGNAADCVYWLHSLAKECKGYECKYRTGMTIRHAA 174
S + ++ +++ + + I C ++G AD + E + + Y MT+
Sbjct: 47 ITSPLMEPSSIEKIVEIDAHIGCAMSGLIADAKTLIDKARVETQNHWFTYNETMTVESVT 106
Query: 175 NLLVNMVRKYRT-GNHSSKIPNGLSFGTLMAAYDEILGPQLYMLDNTGLLIEGTKFCVGS 233
+ N+ ++ + L DE GPQL+ +D +G ++ +GS
Sbjct: 107 QAVSNLALQFGEEDADPGAMSRPFGVALLFGGVDEK-GPQLFHMDPSGTFVQCDARAIGS 165
Query: 234 GAEYAQAILDTDYRPDLSEEEAYALATSAIYHACRRDIHSGGCVRLYKINGQGWQQVLSR 293
+E AQ+ L Y ++ +EA + + + + + L + + ++
Sbjct: 166 ASEGAQSSLQELYHKSMTLKEAIKSSLIILKQVMEEKL-NATNIELATVQPGQNFHMFTK 224
Query: 294 D 294
+
Sbjct: 225 E 225
Score = 40.0 bits (93), Expect = 1e-04
Identities = 25/187 (13%), Positives = 57/187 (30%), Gaps = 22/187 (11%)
Query: 4 TGTTTLGFRYPEGIILATDSRATANDLIVSQKLNKFCQSSLGDSCELLHPVYTGGERCGQ 63
G+T +G + EG+ LA + R T+ L+ + K + C +G +
Sbjct: 26 LGSTAIGIQTSEGVCLAVEKRITSP-LMEPSSIEKIVEIDAHIGC-----AMSGLIADAK 79
Query: 64 SYSQRSHCVAETQQDHFLSPPLSQSSQHIISGDSCELLHPVYTGGERCGPFSQSSTV--- 120
+ ++ + + +S +S + + G PF +
Sbjct: 80 TLIDKARVETQNHWFTYNETMTVESVTQAVSNLALQFGEEDADPGAMSRPFGVALLFGGV 139
Query: 121 ----PHNTSFQVIPVSSSILCTLAGNAADCVYWLHSLAKECKGYECKYRTGMTIRHAANL 176
P G+A++ + Y MT++ A
Sbjct: 140 DEKGPQLFHMDPSGTFVQCDARAIGSASEGAQSS---------LQELYHKSMTLKEAIKS 190
Query: 177 LVNMVRK 183
+ ++++
Sbjct: 191 SLIILKQ 197
>d1irui_ d.153.1.4 (I:) Proteasome beta subunit (catalytic) {Cow
(Bos taurus) [TaxId: 9913]}
Length = 220
Score = 91.4 bits (226), Expect = 2e-22
Identities = 41/190 (21%), Positives = 72/190 (37%), Gaps = 10/190 (5%)
Query: 115 SQSSTVPHNTSFQVIPVSSSILCTLAGNAADCVYWLHSLAKECKGYECKYRTGMTIRHAA 174
++ V ++ +S +I C AG AAD ++ + + + A
Sbjct: 21 TEGMVVADKNCSKIHFISPNIYCCGAGTAADTDMTTQLISSNLELHSLSTGRLPRVVTAN 80
Query: 175 NLLVNMVRKYRTGNHSSKIPNGLSFGTLMAAYDEILGPQLYMLDNTGLLIEGTKFCVGSG 234
+L M+ +Y + ++ D GP LY + G + +GSG
Sbjct: 81 RMLKQMLFRY---------RGYIGAALVLGGVDVT-GPHLYSIYPHGSTDKLPYVTMGSG 130
Query: 235 AEYAQAILDTDYRPDLSEEEAYALATSAIYHACRRDIHSGGCVRLYKINGQGWQQVLSRD 294
+ A A+ + +RPD+ EEEA L + AI D+ SG + L I+ +
Sbjct: 131 SLAAMAVFEDKFRPDMEEEEAKNLVSEAIAAGIFNDLGSGSNIDLCVISKNKLDFLRPYT 190
Query: 295 VKDIYNDRKE 304
V + R
Sbjct: 191 VPNKKGTRLG 200
Score = 47.5 bits (112), Expect = 4e-07
Identities = 21/154 (13%), Positives = 47/154 (30%), Gaps = 3/154 (1%)
Query: 6 TTTLGFRYPEGIILATDSRATANDLIVSQKLNKFCQSSLGDSCELLHPVYTGGERCGQSY 65
TT G Y +GI+L D+RAT ++ + +K + +
Sbjct: 1 TTIAGVVYKDGIVLGADTRATEGMVVADKNCSKIHF--ISPNIYCCGAGTAADTDMTTQL 58
Query: 66 SQRSHCVAETQQDHFLSP-PLSQSSQHIISGDSCELLHPVYTGGERCGPFSQSSTVPHNT 124
+ + ++ + ++ + + GG S PH +
Sbjct: 59 ISSNLELHSLSTGRLPRVVTANRMLKQMLFRYRGYIGAALVLGGVDVTGPHLYSIYPHGS 118
Query: 125 SFQVIPVSSSILCTLAGNAADCVYWLHSLAKECK 158
+ ++ V+ A + + +E K
Sbjct: 119 TDKLPYVTMGSGSLAAMAVFEDKFRPDMEEEEAK 152
>d1rypg_ d.153.1.4 (G:) Proteasome alpha subunit (non-catalytic)
{Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 244
Score = 91.2 bits (226), Expect = 3e-22
Identities = 37/189 (19%), Positives = 67/189 (35%), Gaps = 11/189 (5%)
Query: 122 HNTSFQVIPVSSSILCTLAGNAADCVYWLHSLAKECKGYECKYRTGMTIRHAANLLVNMV 181
+ ++ V I C +G D + ++ +E ++ Y+T + I A+ L V
Sbjct: 57 PQKNVKIQVVDRHIGCVYSGLIPDGRHLVNRGREEAASFKKLYKTPIPIPAFADRLGQYV 116
Query: 182 RKYRTGNHSSKIPNGLSFGTLMAAYDEILGPQLYMLDNTGLLIEGTKFCVGSGAEYAQAI 241
+ + N T+ D+ G LYML+ +G G G + A+A
Sbjct: 117 QAHTLYNS----VRPFGVSTIFGGVDKN-GAHLYMLEPSGSYWGYKGAATGKGRQSAKAE 171
Query: 242 LDT---DYRPDLSEEEAYALATSAIYHACRRDIHSGGCVRLYKI---NGQGWQQVLSRDV 295
L+ + LS EA A IY A + + + G + + D+
Sbjct: 172 LEKLVDHHPEGLSAREAVKQAAKIIYLAHEDNKEKDFELEISWCSLSETNGLHKFVKGDL 231
Query: 296 KDIYNDRKE 304
D +
Sbjct: 232 LQEAIDFAQ 240
Score = 40.4 bits (94), Expect = 1e-04
Identities = 12/40 (30%), Positives = 21/40 (52%), Gaps = 1/40 (2%)
Query: 4 TGTTTLGFRYPEGIILATDSRATANDLIVSQKLNKFCQSS 43
GTT++G + +G++ A + T + L+V QK K
Sbjct: 29 NGTTSIGIKCNDGVVFAVEKLIT-SKLLVPQKNVKIQVVD 67
>d1rype_ d.153.1.4 (E:) Proteasome alpha subunit (non-catalytic)
{Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 242
Score = 90.9 bits (225), Expect = 3e-22
Identities = 32/190 (16%), Positives = 70/190 (36%), Gaps = 2/190 (1%)
Query: 117 SSTVPHNTSFQVIPVSSSILCTLAGNAADCVYWLHSLAKECKGYECKYRTGMTIRHAANL 176
S + ++ +++ + I C ++G AD + + Y + +
Sbjct: 48 SPLLESDSIEKIVEIDRHIGCAMSGLTADARSMIEHARTAAVTHNLYYDEDINVESLTQS 107
Query: 177 LVNMVRKYRTGNHSSKIPNGLSFG--TLMAAYDEILGPQLYMLDNTGLLIEGTKFCVGSG 234
+ ++ ++ G + FG L+A +D G QL+ + +G +GSG
Sbjct: 108 VCDLALRFGEGASGEERLMSRPFGVALLIAGHDADDGYQLFHAEPSGTFYRYNAKAIGSG 167
Query: 235 AEYAQAILDTDYRPDLSEEEAYALATSAIYHACRRDIHSGGCVRLYKINGQGWQQVLSRD 294
+E AQA L ++ L+ +EA L + + G++ +
Sbjct: 168 SEGAQAELLNEWHSSLTLKEAELLVLKILKQVMEEKLDENNAQLSCITKQDGFKIYDNEK 227
Query: 295 VKDIYNDRKE 304
++ + KE
Sbjct: 228 TAELIKELKE 237
Score = 40.1 bits (93), Expect = 2e-04
Identities = 27/187 (14%), Positives = 64/187 (34%), Gaps = 20/187 (10%)
Query: 4 TGTTTLGFRYPEGIILATDSRATANDLIVSQKLNKFCQSSLGDSCELLHPVYTGGERCGQ 63
G+T +G EG++L + RAT+ L+ S + K + C +G +
Sbjct: 25 LGSTAIGIATKEGVVLGVEKRATSP-LLESDSIEKIVEIDRHIGC-----AMSGLTADAR 78
Query: 64 SYSQRSHCVAETQQDHFLSPPLSQSSQHIISGDSCELLHPVYTGGERCGPFSQSSTVPHN 123
S + + A T ++ +S + GE + + P
Sbjct: 79 SMIEHARTAAVTHNLYYDEDINVESLTQSVC-------DLALRFGEGASGEERLMSRPFG 131
Query: 124 TSFQVI---PVSSSILCTLAGNAADCVYWLHSLAKECKG----YECKYRTGMTIRHAANL 176
+ + L + Y ++ +G ++ + +T++ A L
Sbjct: 132 VALLIAGHDADDGYQLFHAEPSGTFYRYNAKAIGSGSEGAQAELLNEWHSSLTLKEAELL 191
Query: 177 LVNMVRK 183
++ ++++
Sbjct: 192 VLKILKQ 198
>d1ryp1_ d.153.1.4 (1:) Proteasome beta subunit (catalytic) {Baker's
yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 222
Score = 89.5 bits (221), Expect = 8e-22
Identities = 31/200 (15%), Positives = 55/200 (27%), Gaps = 24/200 (12%)
Query: 115 SQSSTVPHNTSFQVIPVSSSILCTLAGNAADCVYWLHSLAKECKGYECKYRTGMTIRHAA 174
++ +V +I+ + G AAD + K Y + ++A
Sbjct: 30 ITDYSINSRYEPKVFDCGDNIVMSANGFAADGDALVKRFKNSVKWYHFDHNDKKLSINSA 89
Query: 175 NLLVNMVRKYRTGNHSSKIPNGLSFGTLMAAYDEILGPQLYMLDNTGLLIEGTKFCVGSG 234
+ + + T++A DE +Y D G G+
Sbjct: 90 ARNIQHLLYGKRFFP-------YYVHTIIAGLDEDGKGAVYSFDPVGSYEREQCRAGGAA 142
Query: 235 AEYAQAILDTDYR-----------------PDLSEEEAYALATSAIYHACRRDIHSGGCV 277
A LD LS EE L + A R I G +
Sbjct: 143 ASLIMPFLDNQVNFKNQYEPGTNGKVKKPLKYLSVEEVIKLVRDSFTSATERHIQVGDGL 202
Query: 278 RLYKINGQGWQQVLSRDVKD 297
+ + G ++ +D
Sbjct: 203 EILIVTKDGVRKEFYELKRD 222
Score = 41.3 bits (96), Expect = 5e-05
Identities = 11/38 (28%), Positives = 16/38 (42%)
Query: 4 TGTTTLGFRYPEGIILATDSRATANDLIVSQKLNKFCQ 41
G T LG + +LA D+R + I S+ K
Sbjct: 8 NGGTILGIAGEDFAVLAGDTRNITDYSINSRYEPKVFD 45
>d1irug_ d.153.1.4 (G:) Proteasome alpha subunit (non-catalytic)
{Cow (Bos taurus) [TaxId: 9913]}
Length = 245
Score = 88.9 bits (220), Expect = 2e-21
Identities = 27/152 (17%), Positives = 57/152 (37%), Gaps = 4/152 (2%)
Query: 115 SQSSTVPHNTSFQVIPVSSSILCTLAGNAADCVYWLHSLAKECKGYECKYRTGMTIRHAA 174
S ++ ++ V + +AG AD +E + + + ++H A
Sbjct: 53 VLSKLYEEGSNKRLFNVDRHVGMAVAGLLADARSLADIAREEASNFRSNFGYNIPLKHLA 112
Query: 175 NLLVNMVRKYRTGNHSSKIPNGLSFGTLMAAYDEILGPQLYMLDNTGLLIEGTKFCVGSG 234
+ + V Y + P G SF ++ +Y G QLYM+D +G+ +G
Sbjct: 113 DRVAMYVHAYTLYSA--VRPFGCSF--MLGSYSVNDGAQLYMIDPSGVSYGYWGCAIGKA 168
Query: 235 AEYAQAILDTDYRPDLSEEEAYALATSAIYHA 266
+ A+ ++ +++ + IY
Sbjct: 169 RQAAKTEIEKLQMKEMTCRDIVKEVAKIIYIV 200
Score = 35.0 bits (80), Expect = 0.008
Identities = 5/40 (12%), Positives = 13/40 (32%), Gaps = 1/40 (2%)
Query: 4 TGTTTLGFRYPEGIILATDSRATANDLIVSQKLNKFCQSS 43
+T +G R +G++ + + L +
Sbjct: 32 NSSTAIGIRCKDGVVFGVEKLVL-SKLYEEGSNKRLFNVD 70
>d1iru2_ d.153.1.4 (2:) Proteasome beta subunit (catalytic) {Cow
(Bos taurus) [TaxId: 9913]}
Length = 217
Score = 87.5 bits (216), Expect = 4e-21
Identities = 34/177 (19%), Positives = 59/177 (33%), Gaps = 10/177 (5%)
Query: 115 SQSSTVPHNTSFQVIPVSSSILCTLAGNAADCVYWLHSLAKECKGYECKYRTG-MTIRHA 173
S S +++ V++S + +G+ AD Y L + E + R
Sbjct: 29 SYGSLARFRNISRIMRVNNSTMLGASGDYADFQYLKQVLGQMVIDEELLGDGHSYSPRAI 88
Query: 174 ANLLVNMVRKYRTGNHSSKIPNGLSFGTLMAAYDEILGPQLYMLDNTGLLIEGTKFCVGS 233
+ L + R+ + T++ L +D G+ E G
Sbjct: 89 HSWLTRAMYSRRSKM-------NPLWNTMVIGGYADGESFLGYVDMLGVAYEAPSLATGY 141
Query: 234 GAEYAQAILDTDYR--PDLSEEEAYALATSAIYHACRRDIHSGGCVRLYKINGQGWQ 288
GA AQ +L P LS+ EA L + RD S + + +G +
Sbjct: 142 GAYLAQPLLREVLEKQPVLSQTEARDLVERCMRVLYYRDARSYNRFQTATVTEKGVE 198
Score = 45.9 bits (108), Expect = 2e-06
Identities = 9/35 (25%), Positives = 20/35 (57%)
Query: 4 TGTTTLGFRYPEGIILATDSRATANDLIVSQKLNK 38
TGT+ LG ++ G+++A D + L + +++
Sbjct: 7 TGTSVLGVKFEGGVVIAADMLGSYGSLARFRNISR 41
>d1j2pa_ d.153.1.4 (A:) Proteasome alpha subunit (non-catalytic)
{Archaeon Archaeoglobus fulgidus [TaxId: 2234]}
Length = 243
Score = 88.2 bits (218), Expect = 4e-21
Identities = 36/189 (19%), Positives = 74/189 (39%), Gaps = 7/189 (3%)
Query: 117 SSTVPHNTSFQVIPVSSSILCTLAGNAADCVYWLHSLAKECKGYECKYRTGMTIRHAANL 176
S + +T ++ + I +G AD + E + Y +T++ A
Sbjct: 53 SKLLEKDTIEKIYKIDEHICAATSGLVADARVLIDRARIEAQINRLTYDIPITVKELAKK 112
Query: 177 LVNMVRKYRTGNHSSKIPNGLSFGTLMAAYDEILGPQLYMLDNTGLLIEGTKFCVGSGAE 236
+ + ++Y L+A +E+ P+LY D +G L+E +G G
Sbjct: 113 ICDFKQQY----TQYGGVRPFGVSLLIAGVNEV--PKLYETDPSGALLEYKATAIGMGRM 166
Query: 237 YAQAILDTDYRPDLSEEEAYALATSAIYHACRRDIHSGGC-VRLYKINGQGWQQVLSRDV 295
+ +YR DLS ++A L A+ + ++ V K++ + +++V ++
Sbjct: 167 AVTEFFEKEYRDDLSFDDAMVLGLVAMGLSIESELVPENIEVGYVKVDDRTFKEVSPEEL 226
Query: 296 KDIYNDRKE 304
K E
Sbjct: 227 KPYVERANE 235
Score = 39.6 bits (92), Expect = 2e-04
Identities = 11/38 (28%), Positives = 18/38 (47%), Gaps = 1/38 (2%)
Query: 4 TGTTTLGFRYPEGIILATDSRATANDLIVSQKLNKFCQ 41
G T +G + EG+IL D R + L+ + K +
Sbjct: 30 RGATAIGIKCKEGVILIADKRVGSK-LLEKDTIEKIYK 66
>d1iruc_ d.153.1.4 (C:) Proteasome alpha subunit (non-catalytic)
{Cow (Bos taurus) [TaxId: 9913]}
Length = 250
Score = 87.8 bits (217), Expect = 6e-21
Identities = 38/184 (20%), Positives = 73/184 (39%), Gaps = 8/184 (4%)
Query: 115 SQSSTVPHNTSFQVIPVSSSILCTLAGNAADCVYWLHSLAKECKGYECKYRTGMTIRHAA 174
S ++ ++ + C++AG +D + L + Y +Y+ +
Sbjct: 51 IHKLLDEVFFSEKIYKLNEDMACSVAGITSDANVLTNELRLIAQRYLLQYQEPIPCEQLV 110
Query: 175 NLLVNMVRKYRTGNHSSKIPNGLSFGTLMAAYDEILGPQLYMLDNTGLLIEGTKFCVGSG 234
L ++ + Y K P G+S L +D+ G QLY D +G C+G+
Sbjct: 111 TALCDIKQAYT--QFGGKRPFGVSL--LYIGWDKHYGFQLYQSDPSGNYGGWKATCIGNN 166
Query: 235 AEYAQAILDTDY-RPDLSEEEAYALATSAIYHACRRDIHSGGCVRLYKI---NGQGWQQV 290
+ A ++L DY +++ + A ALA + S V + + NG+ +V
Sbjct: 167 SAAAVSMLKQDYKEGEMTLKSALALAIKVLNKTMDVSKLSAEKVEIATLTRENGKTVIRV 226
Query: 291 LSRD 294
L +
Sbjct: 227 LKQK 230
Score = 39.7 bits (92), Expect = 2e-04
Identities = 9/40 (22%), Positives = 15/40 (37%)
Query: 4 TGTTTLGFRYPEGIILATDSRATANDLIVSQKLNKFCQSS 43
T LG +G++LA + R L K + +
Sbjct: 29 HAGTCLGILANDGVLLAAERRNIHKLLDEVFFSEKIYKLN 68
>d1iruk_ d.153.1.4 (K:) Proteasome beta subunit (catalytic) {Cow
(Bos taurus) [TaxId: 9913]}
Length = 199
Score = 85.7 bits (211), Expect = 1e-20
Identities = 40/176 (22%), Positives = 68/176 (38%), Gaps = 6/176 (3%)
Query: 115 SQSSTVPHNTSFQVIPVSSSILCTLAGNAADCVYWLHSLAKECKGYECKYRTGMTIRHAA 174
+ + + ++ +S IL G A D V + + K + Y+ + ++ AA
Sbjct: 22 ASNIVQMKDDHDKMFKMSEKILLLCVGEAGDTVQFAEYIQKNVQLYKMRNGYELSPTAAA 81
Query: 175 NLLVNMVRKYRTGNHSSKIPNGLSFGTLMAAYDEILGPQLYMLDNTGLLIEGTKFCVGSG 234
N + S+ P ++ +A YDE GP LY +D L + G G
Sbjct: 82 NFTRRNLADCL----RSRTPYHVNLL--LAGYDEHEGPALYYMDYLAALAKAPFAAHGYG 135
Query: 235 AEYAQAILDTDYRPDLSEEEAYALATSAIYHACRRDIHSGGCVRLYKINGQGWQQV 290
A +ILD Y P +S E A L + +R I + + I+ G +
Sbjct: 136 AFLTLSILDRYYTPTISRERAVELLRKCLEELQKRFILNLPTFSVRIIDKNGIHDL 191
Score = 38.3 bits (88), Expect = 5e-04
Identities = 26/174 (14%), Positives = 55/174 (31%), Gaps = 13/174 (7%)
Query: 6 TTTLGFRYPEGIILATDSRATANDLIVSQKLNKFCQSSLGDSCELLHPVYTGGERCGQSY 65
+G + P+ +++A+D A +N + + +K + + + LL G Y
Sbjct: 2 EYLIGIQGPDYVLVASDRVAASNIVQMKDDHDKMFK--MSEKILLLCVGEAGDTVQFAEY 59
Query: 66 SQRSHCVAETQQDHFLSPPLSQSSQHIISGDSCELLHPVYTGGERCGPFSQSSTVPHNTS 125
Q++ + + + + LSP + + D P + G ++
Sbjct: 60 IQKNVQLYKMRNGYELSPTAAANFTRRNLADCLRSRTPYHVNLLLAG---------YDEH 110
Query: 126 FQVIPVSSSILCTLAGNAADCVYWLHSLAKECKGYECKYRTGMTIRHAANLLVN 179
L LA + L + Y ++ A LL
Sbjct: 111 EGPALYYMDYLAALAKAPFAAHGYGAFLTLSI--LDRYYTPTISRERAVELLRK 162
>d1yara1 d.153.1.4 (A:13-233) Proteasome alpha subunit
(non-catalytic) {Archaeon Thermoplasma acidophilum
[TaxId: 2303]}
Length = 221
Score = 85.5 bits (211), Expect = 2e-20
Identities = 32/184 (17%), Positives = 70/184 (38%), Gaps = 5/184 (2%)
Query: 115 SQSSTVPHNTSFQVIPVSSSILCTLAGNAADCVYWLHSLAKECKGYECKYRTGMTIRHAA 174
+S + N+ ++ + + +G AD + + + Y + + I +
Sbjct: 42 VRSRLIEQNSIEKIQLIDDYVAAVTSGLVADARVLVDFARISAQQEKVTYGSLVNIENLV 101
Query: 175 NLLVNMVRKYRTGNHSSKIPNGLSFGTLMAAYDEILGPQLYMLDNTGLLIEGTKFCVGSG 234
+ + +++Y + P + A D+I GP+L+ D G + E +GSG
Sbjct: 102 KRVADQMQQYT--QYGGVRP--YGVSLIFAGIDQI-GPRLFDCDPAGTINEYKATAIGSG 156
Query: 235 AEYAQAILDTDYRPDLSEEEAYALATSAIYHACRRDIHSGGCVRLYKINGQGWQQVLSRD 294
+ + L+ +Y+ +L E+EA L A+ + G ++ +
Sbjct: 157 KDAVVSFLEREYKENLPEKEAVTLGIKALKSSLEEGEELKAPEIASITVGNKYRIYDQEE 216
Query: 295 VKDI 298
VK
Sbjct: 217 VKKF 220
Score = 42.0 bits (98), Expect = 4e-05
Identities = 10/45 (22%), Positives = 20/45 (44%), Gaps = 1/45 (2%)
Query: 4 TGTTTLGFRYPEGIILATDSRATANDLIVSQKLNKFCQSSLGDSC 48
G+T LG ++ G++L +D + + LI + K +
Sbjct: 21 KGSTALGMKFANGVLLISDKKVRSR-LIEQNSIEKIQLIDDYVAA 64
>d1rypc_ d.153.1.4 (C:) Proteasome alpha subunit (non-catalytic)
{Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 244
Score = 85.5 bits (211), Expect = 3e-20
Identities = 39/190 (20%), Positives = 76/190 (40%), Gaps = 10/190 (5%)
Query: 115 SQSSTVPHNTSFQVIPVSSSILCTLAGNAADCVYWLHSLAKECKGYECKYRTGMTIRHAA 174
+ + ++ ++ ++ I +AG AD +++ + Y Y + +
Sbjct: 52 TSTLLEQDTSTEKLYKLNDKIAVAVAGLTADAEILINTARIHAQNYLKTYNEDIPVEILV 111
Query: 175 NLLVNMVRKYRTGNHSSKIPNGLSFGTLMAAYDEILGPQLYMLDNTGLLIEGTKFCVGSG 234
L ++ + Y H P G+SF A YD+ G QLY + +G VG+
Sbjct: 112 RRLSDIKQGYT--QHGGLRPFGVSFI--YAGYDDRYGYQLYTSNPSGNYTGWKAISVGAN 167
Query: 235 AEYAQAILDTDYRPDLSEEEAYALATSAIYHACRRDIHSGGCVRLYKI-----NGQGWQQ 289
AQ +L DY+ D+ ++A LA + + + I +G+ +Q+
Sbjct: 168 TSAAQTLLQMDYKDDMKVDDAIELALKTLSKTTDSSALTYDRLEFATIRKGANDGEVYQK 227
Query: 290 VLSRD-VKDI 298
+ +KDI
Sbjct: 228 IFKPQEIKDI 237
Score = 40.4 bits (94), Expect = 1e-04
Identities = 9/40 (22%), Positives = 17/40 (42%)
Query: 4 TGTTTLGFRYPEGIILATDSRATANDLIVSQKLNKFCQSS 43
T +G +GI+LA + + T+ L K + +
Sbjct: 30 HAGTAIGIMASDGIVLAAERKVTSTLLEQDTSTEKLYKLN 69
>d1rypa_ d.153.1.4 (A:) Proteasome alpha subunit (non-catalytic)
{Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 243
Score = 84.8 bits (209), Expect = 6e-20
Identities = 29/191 (15%), Positives = 59/191 (30%), Gaps = 12/191 (6%)
Query: 115 SQSSTVPHNTSFQVIPVSSSILCTLAGNAADCVYWLHSLAKECKGYECKYRTGMTIRHAA 174
+ T + +S +I + G D E + KY M A
Sbjct: 50 VPDKLLDPTTVSYIFCISRTIGMVVNGPIPDARNAALRAKAEAAEFRYKYGYDMPCDVLA 109
Query: 175 NLLVNMVRKYRTGNHSSKIPNGLSFGTLMAAYDEILGPQLYMLDNTGLLIEGTKFCVGSG 234
+ N+ + Y + P L + DE LGP +Y D G + G
Sbjct: 110 KRMANLSQIYT--QRAYMRP--LGVILTFVSVDEELGPSIYKTDPAGYYVGYKATATGPK 165
Query: 235 AEYAQAILDTDYRPDL-------SEEEAYALATSAIYHACRRDIHSGGCVRLYKINGQGW 287
+ L+ ++ S E+ A + + A + S + + +
Sbjct: 166 QQEITTNLENHFKKSKIDHINEESWEKVVEFAITHMIDALGTEF-SKNDLEVGVATKDKF 224
Query: 288 QQVLSRDVKDI 298
+ + ++++
Sbjct: 225 FTLSAENIEER 235
Score = 35.1 bits (80), Expect = 0.007
Identities = 5/40 (12%), Positives = 14/40 (35%), Gaps = 1/40 (2%)
Query: 4 TGTTTLGFRYPEGIILATDSRATANDLIVSQKLNKFCQSS 43
T +L R + ++ + + L+ ++ S
Sbjct: 29 TNINSLAVRGKDCTVVISQKKVPDK-LLDPTTVSYIFCIS 67
>d1iruj_ d.153.1.4 (J:) Proteasome beta subunit (catalytic) {Cow
(Bos taurus) [TaxId: 9913]}
Length = 204
Score = 82.2 bits (202), Expect = 3e-19
Identities = 32/175 (18%), Positives = 66/175 (37%), Gaps = 10/175 (5%)
Query: 115 SQSSTVPHNTSFQVIPVSSSILCTLAGNAADCVYWLHSLAKECKGYECKYRTGMTIRHAA 174
+ + ++ P+ + LAG A D L YE K +
Sbjct: 28 GIQAQLVTTDFQKIFPMGDRLYIGLAGLATDVQTVAQRLKFRLNLYELKEGRQIKPYTLM 87
Query: 175 NLLVNMVRKYRTGNHSSKIPNGLSFGTLMAAYD-EILGPQLYMLDNTGLLIEGTKFCVG- 232
+++ N++ + R G + + ++A D + P + LD G + F V
Sbjct: 88 SMVANLLYEKRFGPYYT--------EPVIAGLDPKTFKPFICSLDLIGCPMVTDDFVVSG 139
Query: 233 SGAEYAQAILDTDYRPDLSEEEAYALATSAIYHACRRDIHSGGCVRLYKINGQGW 287
+ AE + ++ + P++ + + + A+ +A RD SG V ++ I
Sbjct: 140 TCAEQMYGMCESLWEPNMDPDHLFETISQAMLNAVDRDAVSGMGVIVHIIEKDKI 194
Score = 47.1 bits (111), Expect = 5e-07
Identities = 11/84 (13%), Positives = 25/84 (29%), Gaps = 2/84 (2%)
Query: 1 MFITGTTTLGFRYPEGIILATDSRATANDLIVSQKLNKFCQSSLGDSCELLHPVYTGGER 60
M G + + + +A D R +V+ K +GD + +
Sbjct: 3 MSYNGGAVMAMKGKNCVAIAADRRFGIQAQLVTTDFQKIFP--MGDRLYIGLAGLATDVQ 60
Query: 61 CGQSYSQRSHCVAETQQDHFLSPP 84
+ + E ++ + P
Sbjct: 61 TVAQRLKFRLNLYELKEGRQIKPY 84
>d1rypj_ d.153.1.4 (J:) Proteasome beta subunit (catalytic) {Baker's
yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 204
Score = 82.1 bits (202), Expect = 3e-19
Identities = 32/177 (18%), Positives = 64/177 (36%), Gaps = 10/177 (5%)
Query: 123 NTSFQVIPVSSSILCTLAGNAADCVYWLHSLAKECKGYECKYRTGMTIRHAANLLVNMVR 182
+ F+ I + + G A D + Y+ K + L+ + +
Sbjct: 36 SNKFEKIFHYGHVFLGITGLATDVTTLNEMFRYKTNLYKLKEERAIEPETFTQLVSSSLY 95
Query: 183 KYRTGNHSSKIPNGLSFGTLMAAYDEILG-PQLYMLDNTGLLIEGTKFCVG-SGAEYAQA 240
+ R G G ++A + G P + D G + E F V + ++
Sbjct: 96 ERRFGP--------YFVGPVVAGINSKSGKPFIAGFDLIGCIDEAKDFIVSGTASDQLFG 147
Query: 241 ILDTDYRPDLSEEEAYALATSAIYHACRRDIHSGGCVRLYKINGQGWQQVLSRDVKD 297
+ ++ Y P+L E+ + + A+ +A RD SG +Y I + + +D
Sbjct: 148 MCESLYEPNLEPEDLFETISQALLNAADRDALSGWGAVVYIIKKDEVVKRYLKMRQD 204
Score = 42.9 bits (100), Expect = 1e-05
Identities = 9/37 (24%), Positives = 14/37 (37%)
Query: 5 GTTTLGFRYPEGIILATDSRATANDLIVSQKLNKFCQ 41
G + + + +A D R + L VS K K
Sbjct: 8 GGIVVAMTGKDCVAIACDLRLGSQSLGVSNKFEKIFH 44
>d1rypf_ d.153.1.4 (F:) Proteasome alpha subunit (non-catalytic)
{Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 233
Score = 81.6 bits (201), Expect = 7e-19
Identities = 31/171 (18%), Positives = 63/171 (36%), Gaps = 9/171 (5%)
Query: 128 VIPVSSSILCTLAGNAADCVYWLHSLAKECKGYECKYRTGMTIRHAANLLVNMVRKYRTG 187
+I + +LAG A D + L ++C + + + A +LL + +K
Sbjct: 62 IIKCDEHMGLSLAGLAPDARVLSNYLRQQCNYSSLVFNRKLAVERAGHLLCDKAQKNT-- 119
Query: 188 NHSSKIPNGLSFGTLMAAYDEILGPQLYMLDNTGLLIEGTKFCVGSGAEYAQAIL----D 243
P G L+ YD+ G L +G + E +G+ ++ A+ L D
Sbjct: 120 QSYGGRP--YGVGLLIIGYDKS-GAHLLEFQPSGNVTELYGTAIGARSQGAKTYLERTLD 176
Query: 244 TDYRPDLSEEEAYALATSAIYHACRRDIHSGGCVRLYKINGQGWQQVLSRD 294
T + D + +E AI + R + + + + + + +
Sbjct: 177 TFIKIDGNPDELIKAGVEAISQSLRDESLTVDNLSIAIVGKDTPFTIYDGE 227
Score = 37.0 bits (85), Expect = 0.002
Identities = 8/38 (21%), Positives = 14/38 (36%)
Query: 4 TGTTTLGFRYPEGIILATDSRATANDLIVSQKLNKFCQ 41
G+ T+G R +L R +K+ K +
Sbjct: 30 QGSVTVGLRSNTHAVLVALKRNADELSSYQKKIIKCDE 67
>d1irud_ d.153.1.4 (D:) Proteasome alpha subunit (non-catalytic)
{Cow (Bos taurus) [TaxId: 9913]}
Length = 243
Score = 80.1 bits (197), Expect = 3e-18
Identities = 31/198 (15%), Positives = 75/198 (37%), Gaps = 14/198 (7%)
Query: 115 SQSSTVPHNTSFQVIPVSSSILCTLAGNAADCVYWLHSLAKECKGYECKYRTGMTIRHAA 174
S + T ++ + ++ AG AD ++ EC+ + +T+ +
Sbjct: 48 SVAKLQDERTVRKICALDDNVCMAFAGLTADARIVINRARVECQSHRLTVEDPVTVEYIT 107
Query: 175 NLLVNMVRKYRTGNHSSKIPNGLSFGTLMAAYDEILGPQLYMLDNTGLLIEGTKFCVGSG 234
+ ++ ++Y + + P L+ +D P+LY D +G +G G
Sbjct: 108 RYIASLKQRYT--QSNGRRP--FGISALIVGFDFDGTPRLYQTDPSGTYHAWKANAIGRG 163
Query: 235 AEYAQAILDTDYRPDL--SEEEAYALATSAIYHACRRDIHSGGCVRLYKINGQGWQQVLS 292
A+ + L+ +Y + +++ L A+ G + L + ++L+
Sbjct: 164 AKSVREFLEKNYTDEAIETDDLTIKLVIKALLEV---VQSGGKNIELAVMRRDQSLKILN 220
Query: 293 RD-----VKDIYNDRKEA 305
+ V +I +++E
Sbjct: 221 PEEIEKYVAEIEKEKEEN 238
Score = 39.6 bits (92), Expect = 2e-04
Identities = 9/40 (22%), Positives = 19/40 (47%), Gaps = 1/40 (2%)
Query: 4 TGTTTLGFRYPEGIILATDSRATANDLIVSQKLNKFCQSS 43
G+T +G R + ++L + ++ A L + + K C
Sbjct: 27 KGSTAVGVRGRDIVVLGVEKKSVAK-LQDERTVRKICALD 65
>d1irub_ d.153.1.4 (B:) Proteasome alpha subunit (non-catalytic)
{Cow (Bos taurus) [TaxId: 9913]}
Length = 233
Score = 78.6 bits (193), Expect = 8e-18
Identities = 29/184 (15%), Positives = 64/184 (34%), Gaps = 6/184 (3%)
Query: 115 SQSSTVPHNTSFQVIPVSSSILCTLAGNAADCVYWLHSLAKECKGYECKYRTGMTIRHAA 174
+S + +V P++ I +G D +H K + Y Y+ +
Sbjct: 51 QKSILYDERSVHKVEPITKHIGLVYSGMGPDYRVLVHRARKLAQQYYLVYQEPIPTAQLV 110
Query: 175 NLLVNMVRKYRTGNHSSKIPNGLSFGTLMAAYDEILGPQLYMLDNTGLLIEGTKFCVGSG 234
+ +++++Y +L+ P L+ D +G +G
Sbjct: 111 QRVASVMQEYTQSGGV-----RPFGVSLLICGWNEGRPYLFQSDPSGAYFAWKATAMGKN 165
Query: 235 AEYAQAILDTDYRPDLSEEEAYALATSAIYHACRRDIHSGGCVRLYKINGQGWQQVLSRD 294
+ L+ Y DL E+A A + + + + + + N G++++ +
Sbjct: 166 YVNGKTFLEKRYNEDLELEDAIHTAILTLKESFEGQM-TEDNIEVGICNEAGFRRLTPTE 224
Query: 295 VKDI 298
VKD
Sbjct: 225 VKDY 228
Score = 37.4 bits (86), Expect = 0.001
Identities = 8/38 (21%), Positives = 19/38 (50%), Gaps = 1/38 (2%)
Query: 4 TGTTTLGFRYPEGIILATDSRATANDLIVSQKLNKFCQ 41
G ++G + G++LAT+ + + L + ++K
Sbjct: 30 GGAPSVGIKAANGVVLATEKKQKSI-LYDERSVHKVEP 66
>d1rypb_ d.153.1.4 (B:) Proteasome alpha subunit (non-catalytic)
{Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 250
Score = 77.8 bits (191), Expect = 2e-17
Identities = 30/182 (16%), Positives = 63/182 (34%), Gaps = 6/182 (3%)
Query: 115 SQSSTVPHNTSFQVIPVSSSILCTLAGNAADCVYWLHSLAKECKG-YECKYRTGMTIRHA 173
S S T +V ++ I +G D + K Y+ Y +
Sbjct: 51 SSSPLAMSETLSKVSLLTPDIGAVYSGMGPDYRVLVDKSRKVAHTSYKRIYGEYPPTKLL 110
Query: 174 ANLLVNMVRKYRTGNHSSKIPNGLSFGTLMAAYDEILGPQLYMLDNTGLLIEGTKFCVGS 233
+ + ++++ L+A +DE G LY +D +G +G
Sbjct: 111 VSEVAKIMQEATQSGGV----RPFGVSLLIAGHDEFNGFSLYQVDPSGSYFPWKATAIGK 166
Query: 234 GAEYAQAILDTDYRPDLSEEEAYALATSAIYHACRRDIHSGGCVRLYKINGQGWQQVLSR 293
G+ A+ L+ + +L E+A +A + + + +G + L I + +
Sbjct: 167 GSVAAKTFLEKRWNDELELEDAIHIALLTLKESVEGEF-NGDTIELAIIGDENPDLLGYT 225
Query: 294 DV 295
+
Sbjct: 226 GI 227
Score = 43.2 bits (101), Expect = 1e-05
Identities = 21/183 (11%), Positives = 59/183 (32%), Gaps = 17/183 (9%)
Query: 4 TGTTTLGFRYPEGIILATDSRATANDLIVSQKLNKFCQSSLGDSCELLHPVYTGGERCGQ 63
G T+LG + G+++AT+ ++++ L +S+ L+K +
Sbjct: 30 QGVTSLGIKATNGVVIATEKKSSSP-LAMSETLSKVSLLT-------PDIGAVYSGMGPD 81
Query: 64 SYSQRSHCVAETQQDHFLSPPLSQSSQHIISGDSCELLHPVYTGGERCGPFSQ-SSTVPH 122
+ ++ ++S + + +GG R S +
Sbjct: 82 YRVLVDKSRKVAHTSYKRIYGEYPPTKLLVSEVAKIMQEATQSGGVRPFGVSLLIAGHDE 141
Query: 123 NTSFQVIPVSSSILCTLAGNAADCVYWLHSL-AKECKGY-ECKYRTGMTIRHAANLLVNM 180
F + +G+ + K + E ++ + + A ++ +
Sbjct: 142 FNGFSL------YQVDPSGSYFPWKATAIGKGSVAAKTFLEKRWNDELELEDAIHIALLT 195
Query: 181 VRK 183
+++
Sbjct: 196 LKE 198
>d1irua_ d.153.1.4 (A:) Proteasome alpha subunit (non-catalytic)
{Cow (Bos taurus) [TaxId: 9913]}
Length = 244
Score = 75.0 bits (184), Expect = 2e-16
Identities = 27/187 (14%), Positives = 63/187 (33%), Gaps = 7/187 (3%)
Query: 115 SQSSTVPHNTSFQVIPVSSSILCTLAGNAADCVYWLHSLAKECKGYECKYRTGMTIRHAA 174
+ +T + ++ +I C + G AD + E ++ KY + +
Sbjct: 55 VPDKLLDSSTVTHLFKITENIGCVMTGMTADSRSQVQRARYEAANWKYKYGYEIPVDMLC 114
Query: 175 NLLVNMVRKYRTGNHSSKIPNGLSFGTLMAAYDEILGPQLYMLDNTGLLIEGTKFCVGSG 234
+ ++ + Y ++ P L ++ DE GPQ+Y D G G
Sbjct: 115 KRIADISQVYT--QNAEMRP--LGCCMILIGIDEEQGPQVYKCDPAGYYCGFKATAAGVK 170
Query: 235 AEYAQAILD--TDYRPDLSEEEAYALATSAIYHACRRDIHSGGC-VRLYKINGQGWQQVL 291
+ + L+ + D + E+ A + + D V + + ++ +
Sbjct: 171 QTESTSFLEKKVKKKFDWTFEQTVETAITCLSTVLSIDFKPSEIEVGVVTVENPKFRILT 230
Query: 292 SRDVKDI 298
++
Sbjct: 231 EAEIDAH 237
Score = 36.5 bits (84), Expect = 0.002
Identities = 27/182 (14%), Positives = 48/182 (26%), Gaps = 22/182 (12%)
Query: 4 TGTTTLGFRYPEGIILATDSRATANDLIVSQKLNKFCQSSLGDSCELLHPVYTGGERCGQ 63
G T++ R + ++ T + L+ S + + + C V TG +
Sbjct: 34 GGLTSVAVRGKDCAVIVTQKKVPDK-LLDSSTVTHLFKITENIGC-----VMTGMTADSR 87
Query: 64 SYSQRSHCVAETQQDHFLSPPLSQSSQHIISGDSCELLHPVYTGGERCGPFSQSSTV--- 120
S QR+ A + + I+ + VYT P +
Sbjct: 88 SQVQRARYEAANWKYKYGYEIPVDMLCKRIA-----DISQVYTQNAEMRPLGCCMILIGI 142
Query: 121 -----PHNTSFQVIPVSSSILCTLAGNAADCVYWLHSLAKECKGYECKYRTGMTIRHAAN 175
P ++ P L K+ K T+ A
Sbjct: 143 DEEQGPQV--YKCDPAGYYCGFKATAAGVKQTESTSFLEKKVKKKFDWTFE-QTVETAIT 199
Query: 176 LL 177
L
Sbjct: 200 CL 201
>d1q5qa_ d.153.1.4 (A:) Proteasome alpha subunit (non-catalytic)
{Rhodococcus erythropolis [TaxId: 1833]}
Length = 227
Score = 73.9 bits (181), Expect = 4e-16
Identities = 26/153 (16%), Positives = 43/153 (28%), Gaps = 10/153 (6%)
Query: 128 VIPVSSSILCTLAGNAADCVYWLHSLAKECKGYECKY-RTGMTIRHAANLLVNMVRKYRT 186
V + + G + + Y R +T R AN + T
Sbjct: 45 VSELYDRLGFAAVGKYNEFENLRRAGIVHADMRGYSYDRRDVTGRSLANAYAQTLGTIFT 104
Query: 187 GNHSSKIPNGLSFGTLMAAYDEIL---GPQLYMLDNTGLLIEGTKFCVG-SGAEYAQAIL 242
+A + PQLY + G +++ F V E +
Sbjct: 105 EQP-----KPYEVEICVAEVGRVGSPKAPQLYRITYDGSIVDEQHFVVMGGTTEPIATAM 159
Query: 243 DTDYRPDLSEEEAYALATSAIYHACRRDIHSGG 275
YR DL E A +A +A+ +
Sbjct: 160 RESYRADLDLEAAVGIAVNALRQGGAGEGEKRN 192
Score = 39.6 bits (92), Expect = 2e-04
Identities = 4/28 (14%), Positives = 14/28 (50%)
Query: 4 TGTTTLGFRYPEGIILATDSRATANDLI 31
G + + + +G++ ++ +TA +
Sbjct: 18 RGRSVVVLTFRDGVLFVAENPSTALHKV 45
>d1iru1_ d.153.1.4 (1:) Proteasome beta subunit (catalytic) {Cow
(Bos taurus) [TaxId: 9913]}
Length = 213
Score = 73.0 bits (178), Expect = 6e-16
Identities = 32/186 (17%), Positives = 62/186 (33%), Gaps = 17/186 (9%)
Query: 114 FSQSSTVPHNTSFQVIPVSSSILCTLAGNAADCVYWLHSLAKECKGYECKYRTGMTIRHA 173
S+ ++ S + ++ + +G DC+ + K Y+ MT
Sbjct: 29 LSEGFSIHTRDSPKCYKLTDKTVIGCSGFHGDCLTLTKIIEARLKMYKHSNNKAMTTGAI 88
Query: 174 ANLLVNMVRKYRTGNHSSKIPNGLSFGTLMAAYDEILGPQLYMLDNTGLLIEGTKFCVGS 233
A +L ++ R ++ DE +Y D G + GS
Sbjct: 89 AAMLSTILYSRRFFP--------YYVYNIIGGLDEEGKGAVYSFDPVGSYQRDSFKAGGS 140
Query: 234 GAEYAQAILD---------TDYRPDLSEEEAYALATSAIYHACRRDIHSGGCVRLYKING 284
+ Q +LD LS + A L A RD+++G +R+ +
Sbjct: 141 ASAMLQPLLDNQVGFKNMQNVEHVPLSLDRAMRLVKDVFISAAERDVYTGDALRICIVTK 200
Query: 285 QGWQQV 290
+G ++
Sbjct: 201 EGIREE 206
Score = 42.2 bits (98), Expect = 2e-05
Identities = 9/40 (22%), Positives = 18/40 (45%)
Query: 4 TGTTTLGFRYPEGIILATDSRATANDLIVSQKLNKFCQSS 43
G T L + I+A+D+R + I ++ K + +
Sbjct: 8 NGGTILAIAGEDFAIVASDTRLSEGFSIHTRDSPKCYKLT 47
>d2z3ba1 d.153.1.4 (A:1-180) HslV (ClpQ) protease {Bacillus subtilis
[TaxId: 1423]}
Length = 180
Score = 71.0 bits (173), Expect = 2e-15
Identities = 22/170 (12%), Positives = 47/170 (27%), Gaps = 18/170 (10%)
Query: 115 SQSSTVPHNTSFQVIPV--SSSILCTLAGNAADCVYWLHSLAKECKGYECKYRTGMTIRH 172
+ V + + + + +L AG+ AD + + Y +
Sbjct: 26 TFGQAVVMKHTARKVRKLFNGKVLAGFAGSVADAFTLFEKFEAKLEEYNGNLKRAAVELA 85
Query: 173 AANLLVNMVRKYRTGNHSSKIPNGLSFGTLMAAYDEILGPQLYMLDNTGLLIEGTKFCVG 232
++RK M L + + +G
Sbjct: 86 KEWRSDKVLRKLEA----------------MLIVMNQDTLLLVSGTGEVIEPDDGILAIG 129
Query: 233 SGAEYAQAILDTDYRPDLSEEEAYALATSAIYHACRRDIHSGGCVRLYKI 282
SG YA A + A +A +A+ A +++ + L ++
Sbjct: 130 SGGNYALAAGRALKKHAGESMSASEIARAALETAGEICVYTNDQIILEEL 179
Score = 44.4 bits (104), Expect = 4e-06
Identities = 5/34 (14%), Positives = 13/34 (38%)
Query: 5 GTTTLGFRYPEGIILATDSRATANDLIVSQKLNK 38
TT ++ ++ D + T +V + +
Sbjct: 5 ATTIFAVQHKGRSAMSGDGQVTFGQAVVMKHTAR 38
>d1iruf_ d.153.1.4 (F:) Proteasome alpha subunit (non-catalytic)
{Cow (Bos taurus) [TaxId: 9913]}
Length = 238
Score = 69.3 bits (169), Expect = 2e-14
Identities = 26/189 (13%), Positives = 65/189 (34%), Gaps = 12/189 (6%)
Query: 123 NTSFQVIPVSSSILCTLAGNAADCVYWLHSLAKECKGYECKYRTGMTIRHAANLLVNMVR 182
+++ V + I ++AG AD + + +EC + + + +L+ + +
Sbjct: 55 AHQKKILHVDNHIGISIAGLTADARLLCNFMRQECLDSRFVFDRPLPVSRLVSLIGSKTQ 114
Query: 183 KYRTGNHSSKIPNGLSFGTLMAAYDEILGPQLYMLDNTGLLIEGTKFCVGSGAEYAQAIL 242
+ P G L+A YD+ +GP ++ + + +G+ ++ A+ L
Sbjct: 115 IPT--QRYGRRP--YGVGLLIAGYDD-MGPHIFQTCPSANYFDCRAMSIGARSQSARTYL 169
Query: 243 DTDYR--PDLSEEEAYALATSAIYHACRRDIHSGGC-VRLYKINGQGWQQVLSRD-VKDI 298
+ + + E A+ + V + + + D V
Sbjct: 170 ERHMSEFMECNLNELVKHGLRALRETLPAEQDLTTKNVSIGIVGKDLEFTIYDDDDVSPF 229
Query: 299 ---YNDRKE 304
+R +
Sbjct: 230 LEGLEERPQ 238
Score = 41.2 bits (96), Expect = 7e-05
Identities = 14/113 (12%), Positives = 25/113 (22%), Gaps = 2/113 (1%)
Query: 4 TGTTTLGFRYPEGIILATDSRATANDLIVSQKLNKFCQSSLGDSCELLHPVYTGGERCGQ 63
G+ T+G + +L RA + +K+ L Q
Sbjct: 28 QGSATVGLKSKTHAVLVALKRAQSELAAHQKKILHVDNHIGISIAGLTADARLLCNFMRQ 87
Query: 64 SYSQRSHCVAETQQDHFLSPPLSQSSQHIISGDSCELLHP--VYTGGERCGPF 114
L + +Q + G + GP
Sbjct: 88 ECLDSRFVFDRPLPVSRLVSLIGSKTQIPTQRYGRRPYGVGLLIAGYDDMGPH 140
>d1m4ya_ d.153.1.4 (A:) HslV (ClpQ) protease {Thermotoga maritima
[TaxId: 2336]}
Length = 171
Score = 65.1 bits (158), Expect = 2e-13
Identities = 19/168 (11%), Positives = 47/168 (27%), Gaps = 17/168 (10%)
Query: 115 SQSSTVPHNTSFQVIPVSSSILCTLAGNAADCVYWLHSLAKECKGYECKYRTGMTIRHAA 174
+ STV + +V + + + L + T + A
Sbjct: 21 TFGSTVLKGNARKVRKLGEGKVLAGFAGSVADAMTLFDRFEAKLREWGGNLTKAAVELAK 80
Query: 175 NLLVNMVRKYRTGNHSSKIPNGLSFGTLMAAYDEILGPQLYMLDNTGLLIEGTKFCVGSG 234
+ + V + + + + + + + +GSG
Sbjct: 81 DWRTDRVLRRLEA---------------LLLVADKENIFIISGNGEVIQPDDDAAAIGSG 125
Query: 235 AEYAQAILDTDYRPDLSEEEAYALATSAIYHACRRDIHSGGCVRLYKI 282
YA A R ++ A + A+ A I++ + + ++
Sbjct: 126 GPYALAAAKALLRN--TDLSAREIVEKAMTIAGEICIYTNQNIVIEEV 171
Score = 42.0 bits (98), Expect = 2e-05
Identities = 7/33 (21%), Positives = 12/33 (36%)
Query: 6 TTTLGFRYPEGIILATDSRATANDLIVSQKLNK 38
TT L R ++ D + T ++ K
Sbjct: 1 TTILVVRRNGQTVMGGDGQVTFGSTVLKGNARK 33
>d1g3ka_ d.153.1.4 (A:) HslV (ClpQ) protease {Haemophilus influenzae
[TaxId: 727]}
Length = 173
Score = 62.1 bits (150), Expect = 2e-12
Identities = 23/169 (13%), Positives = 49/169 (28%), Gaps = 18/169 (10%)
Query: 115 SQSSTVPHNTSFQVIPVSS-SILCTLAGNAADCVYWLHSLAKECKGYECKYRTGMTIRHA 173
S +TV + +V + + +L AG AD E K + +
Sbjct: 21 SLGNTVMKGNARKVRRLYNGKVLAGFAGGTADAFTLFELF--ERKLEMHQGHLLKSAVEL 78
Query: 174 ANLLVNMVRKYRTGNHSSKIPNGLSFGTLMAAYDEILGPQLYMLDNTGLLIEGTKFCVGS 233
A + + DE + + + E +GS
Sbjct: 79 AKDWRTDRALRKLEAM-------------LIVADEKESLIITGIGDVVQPEEDQILAIGS 125
Query: 234 GAEYAQAILDTDYRPDLSEEEAYALATSAIYHACRRDIHSGGCVRLYKI 282
G YA + + +E A+ + ++ A + + + ++
Sbjct: 126 GGNYALS--AARALVENTELSAHEIVEKSLRIAGDICVFTNTNFTIEEL 172
Score = 42.5 bits (99), Expect = 1e-05
Identities = 5/33 (15%), Positives = 14/33 (42%)
Query: 6 TTTLGFRYPEGIILATDSRATANDLIVSQKLNK 38
TT + R +++ D + + + ++ K
Sbjct: 1 TTIVSVRRNGQVVVGGDGQVSLGNTVMKGNARK 33
>d1rypd_ d.153.1.4 (D:) Proteasome alpha subunit (non-catalytic)
{Baker's yeast (Saccharomyces cerevisiae) [TaxId:
4932]}
Length = 241
Score = 37.3 bits (86), Expect = 0.001
Identities = 7/38 (18%), Positives = 15/38 (39%)
Query: 4 TGTTTLGFRYPEGIILATDSRATANDLIVSQKLNKFCQ 41
GT +G + ++L + R+T +K +
Sbjct: 27 RGTCAVGVKGKNCVVLGCERRSTLKLQDTRITPSKVSK 64
>d1n5ua2 a.126.1.1 (A:197-388) Serum albumin {Human (Homo sapiens)
[TaxId: 9606]}
Length = 192
Score = 27.5 bits (61), Expect = 1.4
Identities = 14/58 (24%), Positives = 26/58 (44%), Gaps = 1/58 (1%)
Query: 44 LGDSCELLHPVYTG-GERCGQSYSQRSHCVAETQQDHFLSPPLSQSSQHIISGDSCEL 100
CE + + E C + ++SHC+AE + D + S ++ + S D C+
Sbjct: 65 AKYICENQDSISSKLKECCEKPLLEKSHCIAEVENDEMPADLPSLAADFVESKDVCKN 122
>d1fwxa2 b.69.3.1 (A:8-451) Nitrous oxide reductase, N-terminal
domain {Paracoccus denitrificans [TaxId: 266]}
Length = 459
Score = 27.4 bits (61), Expect = 2.4
Identities = 14/35 (40%), Positives = 18/35 (51%), Gaps = 3/35 (8%)
Query: 78 DHFLS--PPLSQSSQHI-ISGDSCELLHPVYTGGE 109
D FL+ P ++ Q I ISGD L+H T E
Sbjct: 409 DRFLNVGPLKPENDQLIDISGDKMVLVHDGPTFAE 443
>d1n5ua3 a.126.1.1 (A:389-584) Serum albumin {Human (Homo sapiens)
[TaxId: 9606]}
Length = 196
Score = 26.0 bits (57), Expect = 5.6
Identities = 14/60 (23%), Positives = 19/60 (31%), Gaps = 3/60 (5%)
Query: 44 LGDSCEL--LHPVYTG-GERCGQSYSQRSHCVAETQQDHFLSPPLSQSSQHIISGDSCEL 100
L C L PV + C +S R C + + D P + D C L
Sbjct: 69 LNQLCVLHEKTPVSDRVTKCCTESLVNRRPCFSALEVDETYVPKEFNAETFTFHADICTL 128
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.319 0.135 0.415
Gapped
Lambda K H
0.267 0.0493 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,142,044
Number of extensions: 50324
Number of successful extensions: 209
Number of sequences better than 10.0: 1
Number of HSP's gapped: 189
Number of HSP's successfully gapped: 77
Length of query: 312
Length of database: 2,407,596
Length adjustment: 85
Effective length of query: 227
Effective length of database: 1,240,546
Effective search space: 281603942
Effective search space used: 281603942
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 53 (24.8 bits)