BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= psy14212
         (111 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|2DU2|A Chain A, Crystal Structure Analysis Of The L-Lactate Oxidase
 pdb|2DU2|B Chain B, Crystal Structure Analysis Of The L-Lactate Oxidase
 pdb|2DU2|C Chain C, Crystal Structure Analysis Of The L-Lactate Oxidase
 pdb|2DU2|D Chain D, Crystal Structure Analysis Of The L-Lactate Oxidase
 pdb|2E77|A Chain A, Crystal Structure Of L-Lactate Oxidase With Pyruvate
           Complex
 pdb|2E77|B Chain B, Crystal Structure Of L-Lactate Oxidase With Pyruvate
           Complex
 pdb|2E77|C Chain C, Crystal Structure Of L-Lactate Oxidase With Pyruvate
           Complex
 pdb|2E77|D Chain D, Crystal Structure Of L-Lactate Oxidase With Pyruvate
           Complex
 pdb|2ZFA|A Chain A, Structure Of Lactate Oxidase At Ph4.5 From Aerococcus
           Viridans
 pdb|2ZFA|B Chain B, Structure Of Lactate Oxidase At Ph4.5 From Aerococcus
           Viridans
          Length = 374

 Score = 26.2 bits (56), Expect = 4.8,   Method: Composition-based stats.
 Identities = 11/21 (52%), Positives = 14/21 (66%)

Query: 81  MWVSKHLARQYEEQQGNTETL 101
           +WVS H ARQ  E  G+ +TL
Sbjct: 260 IWVSNHGARQLYEAPGSFDTL 280


>pdb|2NLI|A Chain A, Crystal Structure Of The Complex Between L-Lactate Oxidase
           And A Substrate Analogue At 1.59 Angstrom Resolution
 pdb|2NLI|B Chain B, Crystal Structure Of The Complex Between L-Lactate Oxidase
           And A Substrate Analogue At 1.59 Angstrom Resolution
          Length = 368

 Score = 26.2 bits (56), Expect = 4.8,   Method: Composition-based stats.
 Identities = 11/21 (52%), Positives = 14/21 (66%)

Query: 81  MWVSKHLARQYEEQQGNTETL 101
           +WVS H ARQ  E  G+ +TL
Sbjct: 254 IWVSNHGARQLYEAPGSFDTL 274


>pdb|2J6X|A Chain A, The Crystal Structure Of Lactate Oxidase
 pdb|2J6X|B Chain B, The Crystal Structure Of Lactate Oxidase
 pdb|2J6X|C Chain C, The Crystal Structure Of Lactate Oxidase
 pdb|2J6X|D Chain D, The Crystal Structure Of Lactate Oxidase
 pdb|2J6X|E Chain E, The Crystal Structure Of Lactate Oxidase
 pdb|2J6X|F Chain F, The Crystal Structure Of Lactate Oxidase
 pdb|2J6X|G Chain G, The Crystal Structure Of Lactate Oxidase
 pdb|2J6X|H Chain H, The Crystal Structure Of Lactate Oxidase
          Length = 374

 Score = 26.2 bits (56), Expect = 4.8,   Method: Composition-based stats.
 Identities = 11/21 (52%), Positives = 14/21 (66%)

Query: 81  MWVSKHLARQYEEQQGNTETL 101
           +WVS H ARQ  E  G+ +TL
Sbjct: 260 IWVSNHGARQLYEAPGSFDTL 280


>pdb|2IK8|B Chain B, Crystal Structure Of The Heterodimeric Complex Of Human
           Rgs16 And Activated Gi Alpha 1
 pdb|2IK8|D Chain D, Crystal Structure Of The Heterodimeric Complex Of Human
           Rgs16 And Activated Gi Alpha 1
          Length = 140

 Score = 25.4 bits (54), Expect = 7.6,   Method: Compositional matrix adjust.
 Identities = 27/93 (29%), Positives = 39/93 (41%), Gaps = 20/93 (21%)

Query: 21  ILYTQGGLENIE--LAISHYLMAINLNEKNIRALYGLALSCHQVLTSAKCSAAKK----- 73
            L T+   EN+E  LA   +        K IR+   LA   HQ+     CS A K     
Sbjct: 32  FLKTEFSEENLEFWLACEEF--------KKIRSATKLASRAHQIFEEFICSEAPKEVNID 83

Query: 74  ---KEISKQMMWVSKHLARQYEEQQGNTETLTE 103
              +E+++  M +    A  ++  QG T TL E
Sbjct: 84  HETRELTR--MNLQTATATCFDAAQGKTRTLME 114


>pdb|2BT2|A Chain A, Structure Of The Regulator Of G-Protein Signaling 16
 pdb|2BT2|B Chain B, Structure Of The Regulator Of G-Protein Signaling 16
 pdb|2BT2|C Chain C, Structure Of The Regulator Of G-Protein Signaling 16
 pdb|2BT2|D Chain D, Structure Of The Regulator Of G-Protein Signaling 16
 pdb|2BT2|E Chain E, Structure Of The Regulator Of G-Protein Signaling 16
          Length = 161

 Score = 25.4 bits (54), Expect = 8.0,   Method: Compositional matrix adjust.
 Identities = 20/65 (30%), Positives = 29/65 (44%), Gaps = 10/65 (15%)

Query: 47  KNIRALYGLALSCHQVLTSAKCSAAKK--------KEISKQMMWVSKHLARQYEEQQGNT 98
           K IR+   LA   HQ+     CS A K        +E+++  M +    A  ++  QG T
Sbjct: 73  KKIRSATKLASRAHQIFEEFICSEAPKEVNIDHETRELTR--MNLQTATATCFDAAQGKT 130

Query: 99  ETLTE 103
            TL E
Sbjct: 131 RTLME 135


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.314    0.125    0.341 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 2,371,544
Number of Sequences: 62578
Number of extensions: 67744
Number of successful extensions: 175
Number of sequences better than 100.0: 8
Number of HSP's better than 100.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 171
Number of HSP's gapped (non-prelim): 8
length of query: 111
length of database: 14,973,337
effective HSP length: 75
effective length of query: 36
effective length of database: 10,279,987
effective search space: 370079532
effective search space used: 370079532
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 45 (21.9 bits)