BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy14212
(111 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q6TGY8|EMC2_DANRE ER membrane protein complex subunit 2 OS=Danio rerio GN=emc2 PE=2
SV=1
Length = 297
Score = 93.2 bits (230), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 45/118 (38%), Positives = 75/118 (63%), Gaps = 7/118 (5%)
Query: 1 MEELFLHHPHNHLLHQRYADILYTQGGLENIELAISHYLMAINLNEKNIRALYGLALSCH 60
+EEL + +PHNHL ++YA++ YTQGGLEN+ELA ++ A+ LN +N+RAL+GL +S
Sbjct: 178 LEELMMTNPHNHLYCEQYAEVKYTQGGLENLELARKYFAQALKLNNRNMRALFGLYMSAS 237
Query: 61 QVLTSAKCSAAKKKEISKQMMWVSKHLARQYE-------EQQGNTETLTELMSALQVS 111
+ S K SA KK+ K W + ++R Y+ E + + + + E++ +LQ++
Sbjct: 238 HIAASPKVSAKVKKDNVKYAAWAAAQISRAYQMAGRGKKENKCSVKAVEEMLESLQIT 295
>sp|Q5R882|EMC2_PONAB ER membrane protein complex subunit 2 OS=Pongo abelii GN=EMC2 PE=2
SV=1
Length = 297
Score = 89.7 bits (221), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 43/118 (36%), Positives = 74/118 (62%), Gaps = 7/118 (5%)
Query: 1 MEELFLHHPHNHLLHQRYADILYTQGGLENIELAISHYLMAINLNEKNIRALYGLALSCH 60
+EEL + +PHNHL Q+YA++ YTQGGLEN+EL+ ++ A+ LN +N+RAL+GL +S
Sbjct: 178 LEELMMTNPHNHLYCQQYAEVKYTQGGLENLELSRKYFAQALKLNNRNMRALFGLYMSAS 237
Query: 61 QVLTSAKCSAAKKKEISKQMMWVSKHLARQYE-------EQQGNTETLTELMSALQVS 111
+ ++ K SA KK+ K W + + R Y+ E + + + + +++ LQ++
Sbjct: 238 HIASNPKASAKTKKDNMKYASWAASQINRAYQFAGRSKKETKYSLKAVEDMLETLQIT 295
>sp|Q15006|EMC2_HUMAN ER membrane protein complex subunit 2 OS=Homo sapiens GN=EMC2 PE=1
SV=1
Length = 297
Score = 89.7 bits (221), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 43/118 (36%), Positives = 74/118 (62%), Gaps = 7/118 (5%)
Query: 1 MEELFLHHPHNHLLHQRYADILYTQGGLENIELAISHYLMAINLNEKNIRALYGLALSCH 60
+EEL + +PHNHL Q+YA++ YTQGGLEN+EL+ ++ A+ LN +N+RAL+GL +S
Sbjct: 178 LEELMMTNPHNHLYCQQYAEVKYTQGGLENLELSRKYFAQALKLNNRNMRALFGLYMSAS 237
Query: 61 QVLTSAKCSAAKKKEISKQMMWVSKHLARQYE-------EQQGNTETLTELMSALQVS 111
+ ++ K SA KK+ K W + + R Y+ E + + + + +++ LQ++
Sbjct: 238 HIASNPKASAKTKKDNMKYASWAASQINRAYQFAGRSKKETKYSLKAVEDMLETLQIT 295
>sp|B0BNG0|EMC2_RAT ER membrane protein complex subunit 2 OS=Rattus norvegicus GN=Emc2
PE=2 SV=1
Length = 297
Score = 89.0 bits (219), Expect = 7e-18, Method: Compositional matrix adjust.
Identities = 42/118 (35%), Positives = 74/118 (62%), Gaps = 7/118 (5%)
Query: 1 MEELFLHHPHNHLLHQRYADILYTQGGLENIELAISHYLMAINLNEKNIRALYGLALSCH 60
+EEL + +PHNHL Q+YA++ YTQGGLEN+EL+ ++ A+ LN +N+RAL+GL +S
Sbjct: 178 LEELMMTNPHNHLYCQQYAEVKYTQGGLENLELSRKYFAQALKLNNRNMRALFGLYMSAS 237
Query: 61 QVLTSAKCSAAKKKEISKQMMWVSKHLARQYE-------EQQGNTETLTELMSALQVS 111
+ ++ K SA KK+ + W + + R Y+ E + + + + +++ LQ++
Sbjct: 238 HIASNPKASAKMKKDNIRYAGWAANQINRAYQFAGRSKKETKSSLKAVEDMLETLQIT 295
>sp|Q9CRD2|EMC2_MOUSE ER membrane protein complex subunit 2 OS=Mus musculus GN=Emc2 PE=2
SV=1
Length = 297
Score = 89.0 bits (219), Expect = 8e-18, Method: Compositional matrix adjust.
Identities = 43/118 (36%), Positives = 74/118 (62%), Gaps = 7/118 (5%)
Query: 1 MEELFLHHPHNHLLHQRYADILYTQGGLENIELAISHYLMAINLNEKNIRALYGLALSCH 60
+EEL + +PHNHL Q+YA++ YTQGGLEN+EL+ ++ A+ LN +N+RAL+GL +S
Sbjct: 178 LEELMMTNPHNHLYCQQYAEVKYTQGGLENLELSRKYFAQALKLNNRNMRALFGLYMSAS 237
Query: 61 QVLTSAKCSAAKKKEISKQMMWVSKHLARQYE-------EQQGNTETLTELMSALQVS 111
+ ++ K SA KK+ K W + + R Y+ E + + + + +++ LQ++
Sbjct: 238 HIASNPKASAKMKKDNIKYASWAANQINRAYQFAGRSKKETKYSLKAVEDMLETLQIT 295
>sp|Q5M7J9|EMC2_XENTR ER membrane protein complex subunit 2 OS=Xenopus tropicalis GN=emc2
PE=2 SV=1
Length = 297
Score = 87.0 bits (214), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 41/118 (34%), Positives = 73/118 (61%), Gaps = 7/118 (5%)
Query: 1 MEELFLHHPHNHLLHQRYADILYTQGGLENIELAISHYLMAINLNEKNIRALYGLALSCH 60
+EEL L +PHNH +Q++A++ YTQGGLEN+EL+ ++ A+ LN N+RAL+GL +S
Sbjct: 178 LEELILTNPHNHFYYQQFAEVKYTQGGLENLELSRKYFSQALKLNNHNMRALFGLYISSV 237
Query: 61 QVLTSAKCSAAKKKEISKQMMWVSKHLARQYE-------EQQGNTETLTELMSALQVS 111
+ ++ K SA KK+ K W + + + Y+ + Q + + + +++ LQ++
Sbjct: 238 HIASNPKASAKMKKDNVKYATWATSQIKKAYQLAGRTMTDTQTSLKAVEDMLETLQIT 295
>sp|Q6INS3|EMC2A_XENLA ER membrane protein complex subunit 2-A OS=Xenopus laevis GN=emc2-a
PE=2 SV=1
Length = 297
Score = 87.0 bits (214), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 41/118 (34%), Positives = 73/118 (61%), Gaps = 7/118 (5%)
Query: 1 MEELFLHHPHNHLLHQRYADILYTQGGLENIELAISHYLMAINLNEKNIRALYGLALSCH 60
+EEL L +PHNH +Q++A++ YTQGGLEN+EL+ ++ A+ LN N+RAL+GL +S
Sbjct: 178 LEELILTNPHNHFYYQQFAEVKYTQGGLENLELSRKYFSQALKLNNHNMRALFGLYISSV 237
Query: 61 QVLTSAKCSAAKKKEISKQMMWVSKHLARQYE-------EQQGNTETLTELMSALQVS 111
+ ++ K SA KK+ K W + + + Y+ + Q + + + +++ LQ++
Sbjct: 238 HIASNPKASAKMKKDNVKYATWAASQIKKAYQLAGRTMTDTQTSLKAVEDMLETLQIT 295
>sp|Q5E993|EMC2_BOVIN ER membrane protein complex subunit 2 OS=Bos taurus GN=EMC2 PE=2
SV=1
Length = 297
Score = 86.3 bits (212), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 41/118 (34%), Positives = 74/118 (62%), Gaps = 7/118 (5%)
Query: 1 MEELFLHHPHNHLLHQRYADILYTQGGLENIELAISHYLMAINLNEKNIRALYGLALSCH 60
+EEL + +P+NHL Q+YA++ YTQGGLEN+EL+ ++ A+ LN +N+RAL+GL +S
Sbjct: 178 LEELMMTNPYNHLYCQQYAEVKYTQGGLENLELSRKYFAQALKLNNRNMRALFGLYMSAS 237
Query: 61 QVLTSAKCSAAKKKEISKQMMWVSKHLARQYE-------EQQGNTETLTELMSALQVS 111
+ ++ K SA KK+ K W + + + Y+ E + + + + +++ LQ++
Sbjct: 238 HIASNPKASAKTKKDNMKYASWAASQINKAYQFAGRSKKETKYSLKAVEDMLETLQIT 295
>sp|Q8AVU9|EMC2B_XENLA ER membrane protein complex subunit 2-B OS=Xenopus laevis GN=emc2-b
PE=2 SV=1
Length = 297
Score = 85.1 bits (209), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 40/118 (33%), Positives = 73/118 (61%), Gaps = 7/118 (5%)
Query: 1 MEELFLHHPHNHLLHQRYADILYTQGGLENIELAISHYLMAINLNEKNIRALYGLALSCH 60
+EEL L +PHNH +Q++A++ YTQGGLEN+EL+ ++ A+ LN ++RAL+GL +S
Sbjct: 178 LEELILTNPHNHFYYQQFAEVKYTQGGLENLELSRKYFSQALKLNNHSMRALFGLYMSSV 237
Query: 61 QVLTSAKCSAAKKKEISKQMMWVSKHLARQYE-------EQQGNTETLTELMSALQVS 111
+ ++ K SA KK+ K W + + + Y+ + Q + + + +++ LQ++
Sbjct: 238 HIASNPKASAKMKKDNVKYATWATSQIKKAYQLAGRTMTDTQTSLKAVEDMLETLQIT 295
>sp|Q86K48|EMC2_DICDI ER membrane protein complex subunit 2 OS=Dictyostelium discoideum
GN=emc2 PE=3 SV=1
Length = 322
Score = 40.8 bits (94), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 22/73 (30%), Positives = 38/73 (52%), Gaps = 11/73 (15%)
Query: 1 MEELFLHHPHNHLLHQRYADILYTQGGLENIELAISHYLMAINLNEKN-----------I 49
+EE+ L+ P N + + +YA+ LY GG EN A+ +Y A+ LN +
Sbjct: 199 LEEVLLNAPINFVFYIKYAEPLYCLGGNENYNSAVQYYTHALELNSPTEMDKLDHPPTFL 258
Query: 50 RALYGLALSCHQV 62
A+YG+ +S + +
Sbjct: 259 PAIYGIIMSIYSL 271
>sp|O60110|OCA3_SCHPO TPR repeat protein oca3 OS=Schizosaccharomyces pombe (strain 972 /
ATCC 24843) GN=oca3 PE=4 SV=3
Length = 282
Score = 33.9 bits (76), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 16/64 (25%), Positives = 29/64 (45%), Gaps = 2/64 (3%)
Query: 2 EELFLHHPHNHLLHQRYADILYT--QGGLENIELAISHYLMAINLNEKNIRALYGLALSC 59
EE+ L P L R D+ + Q N ++ HY ++ + E+ +G++ C
Sbjct: 163 EEMVLLQPFEPRLFARLGDLYFVLAQSNATNYWFSLKHYCRSVEICEEYFHGWFGISKCC 222
Query: 60 HQVL 63
Q+L
Sbjct: 223 QQLL 226
>sp|O94556|APC8_SCHPO Anaphase-promoting complex subunit 8 OS=Schizosaccharomyces pombe
(strain 972 / ATCC 24843) GN=cut23 PE=1 SV=2
Length = 565
Score = 31.2 bits (69), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 13/29 (44%), Positives = 19/29 (65%)
Query: 28 LENIELAISHYLMAINLNEKNIRALYGLA 56
L+N AI Y +A+++N K+ RA YGL
Sbjct: 385 LKNTHAAIESYRLAVDVNRKDYRAWYGLG 413
>sp|Q5UXW4|SYH_HALMA Histidine--tRNA ligase OS=Haloarcula marismortui (strain ATCC 43049
/ DSM 3752 / JCM 8966 / VKM B-1809) GN=hisS PE=3 SV=1
Length = 435
Score = 31.2 bits (69), Expect = 2.0, Method: Composition-based stats.
Identities = 18/43 (41%), Positives = 26/43 (60%), Gaps = 1/43 (2%)
Query: 55 LALSCHQVLTSAKCSAAKKKEISKQMMWVSKHLARQYEE-QQG 96
+AL+ T A+ AK++E+SK + WVS +YEE QQG
Sbjct: 72 VALTPELTPTVARMFVAKQQELSKPIKWVSTRPFWRYEEPQQG 114
>sp|Q8IUR5|TMTC1_HUMAN Transmembrane and TPR repeat-containing protein 1 OS=Homo sapiens
GN=TMTC1 PE=1 SV=3
Length = 882
Score = 29.3 bits (64), Expect = 6.7, Method: Compositional matrix adjust.
Identities = 20/48 (41%), Positives = 25/48 (52%), Gaps = 3/48 (6%)
Query: 9 PHNHLLHQRYADILYTQGGLENIELAISHYLMAINLNEKNIRALYGLA 56
PHN +H YA+ L QG N E AI HY A+ L ++ AL L
Sbjct: 480 PHNAKVHYNYANFLKDQG--RNKE-AIYHYRTALKLYPRHASALNNLG 524
>sp|Q3UV71|TMTC1_MOUSE Transmembrane and TPR repeat-containing protein 1 OS=Mus musculus
GN=Tmtc1 PE=2 SV=2
Length = 942
Score = 29.3 bits (64), Expect = 6.8, Method: Compositional matrix adjust.
Identities = 20/48 (41%), Positives = 25/48 (52%), Gaps = 3/48 (6%)
Query: 9 PHNHLLHQRYADILYTQGGLENIELAISHYLMAINLNEKNIRALYGLA 56
PHN +H YA+ L QG N E AI HY A+ L ++ AL L
Sbjct: 540 PHNAKVHYNYANFLKDQG--RNKE-AIYHYRTALKLYPRHASALNNLG 584
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.318 0.128 0.367
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 36,854,476
Number of Sequences: 539616
Number of extensions: 1145799
Number of successful extensions: 3916
Number of sequences better than 100.0: 18
Number of HSP's better than 100.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 3902
Number of HSP's gapped (non-prelim): 18
length of query: 111
length of database: 191,569,459
effective HSP length: 79
effective length of query: 32
effective length of database: 148,939,795
effective search space: 4766073440
effective search space used: 4766073440
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 55 (25.8 bits)