Query psy14212
Match_columns 111
No_of_seqs 107 out of 154
Neff 5.4
Searched_HMMs 46136
Date Fri Aug 16 22:18:44 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy14212.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/14212hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG3060|consensus 100.0 3.7E-31 7.9E-36 209.3 10.2 111 1-111 177-289 (289)
2 PF13414 TPR_11: TPR repeat; P 97.9 5.8E-05 1.3E-09 46.2 6.0 50 11-63 2-51 (69)
3 PF13432 TPR_16: Tetratricopep 97.9 1.8E-05 3.9E-10 48.2 3.4 43 3-48 22-64 (65)
4 PRK15359 type III secretion sy 97.7 8.6E-05 1.9E-09 52.8 5.5 59 2-63 48-106 (144)
5 PF13371 TPR_9: Tetratricopept 97.6 8.5E-05 1.8E-09 45.8 3.6 48 1-51 18-65 (73)
6 PF07719 TPR_2: Tetratricopept 97.6 0.00018 4E-09 38.4 4.3 33 13-48 2-34 (34)
7 PF13414 TPR_11: TPR repeat; P 97.5 0.00013 2.8E-09 44.7 3.1 44 1-46 26-69 (69)
8 PF00515 TPR_1: Tetratricopept 97.4 0.00039 8.5E-09 37.5 4.1 32 14-48 3-34 (34)
9 PF13428 TPR_14: Tetratricopep 97.3 0.00055 1.2E-08 39.5 4.7 40 14-56 3-42 (44)
10 PF14559 TPR_19: Tetratricopep 97.3 0.0003 6.5E-09 42.8 3.7 44 2-48 15-58 (68)
11 COG3063 PilF Tfp pilus assembl 97.3 0.00033 7.1E-09 55.6 4.6 57 1-60 58-116 (250)
12 cd00189 TPR Tetratricopeptide 97.3 0.0013 2.7E-08 38.6 6.0 52 3-57 25-76 (100)
13 TIGR02552 LcrH_SycD type III s 97.1 0.0017 3.6E-08 43.9 6.0 59 2-63 7-65 (135)
14 PRK15359 type III secretion sy 97.1 0.0015 3.3E-08 46.4 5.9 48 2-52 82-129 (144)
15 PLN03088 SGT1, suppressor of 97.1 0.0015 3.2E-08 53.1 6.4 61 1-64 25-85 (356)
16 PRK10370 formate-dependent nit 97.1 0.0015 3.3E-08 48.9 5.6 54 2-58 63-116 (198)
17 TIGR02552 LcrH_SycD type III s 97.0 0.0015 3.2E-08 44.2 5.1 57 2-61 41-97 (135)
18 PRK10370 formate-dependent nit 96.9 0.002 4.4E-08 48.3 5.5 62 2-63 97-158 (198)
19 PF13181 TPR_8: Tetratricopept 96.9 0.0013 2.8E-08 35.2 3.3 32 14-48 3-34 (34)
20 PF13432 TPR_16: Tetratricopep 96.9 0.0043 9.3E-08 37.5 5.7 43 17-62 2-44 (65)
21 PRK12370 invasion protein regu 96.9 0.0026 5.7E-08 54.1 6.1 55 2-59 328-382 (553)
22 PLN03088 SGT1, suppressor of 96.8 0.0039 8.4E-08 50.6 6.1 60 2-64 60-119 (356)
23 PRK11189 lipoprotein NlpI; Pro 96.7 0.004 8.7E-08 48.9 5.8 50 4-56 90-139 (296)
24 TIGR02521 type_IV_pilW type IV 96.7 0.0052 1.1E-07 43.0 5.6 54 2-58 55-108 (234)
25 PRK02603 photosystem I assembl 96.6 0.03 6.6E-07 40.2 9.5 59 2-63 59-120 (172)
26 PRK15363 pathogenicity island 96.6 0.018 4E-07 42.8 8.3 44 17-63 40-83 (157)
27 TIGR00990 3a0801s09 mitochondr 96.6 0.0048 1E-07 52.7 5.8 55 2-59 389-443 (615)
28 COG4235 Cytochrome c biogenesi 96.5 0.0041 8.9E-08 50.3 4.6 56 3-58 181-236 (287)
29 smart00028 TPR Tetratricopepti 96.3 0.0081 1.8E-07 29.1 3.5 33 13-48 2-34 (34)
30 PRK15363 pathogenicity island 96.3 0.013 2.7E-07 43.7 5.8 58 4-64 61-118 (157)
31 PF13431 TPR_17: Tetratricopep 96.3 0.0037 8E-08 34.8 2.2 32 1-35 2-33 (34)
32 cd00189 TPR Tetratricopeptide 96.2 0.0086 1.9E-07 34.9 3.6 43 2-47 58-100 (100)
33 PRK12370 invasion protein regu 96.2 0.011 2.5E-07 50.2 5.7 50 1-53 361-410 (553)
34 PRK11189 lipoprotein NlpI; Pro 96.1 0.015 3.3E-07 45.6 5.7 50 2-54 122-172 (296)
35 TIGR03302 OM_YfiO outer membra 95.9 0.015 3.3E-07 43.0 4.8 58 1-61 56-119 (235)
36 KOG1155|consensus 95.9 0.013 2.9E-07 50.7 4.8 54 5-61 357-410 (559)
37 PRK11447 cellulose synthase su 95.8 0.017 3.7E-07 53.2 5.6 55 1-58 374-428 (1157)
38 KOG1125|consensus 95.8 0.0075 1.6E-07 52.8 2.9 60 2-64 454-513 (579)
39 TIGR00990 3a0801s09 mitochondr 95.7 0.026 5.6E-07 48.2 5.9 52 2-56 423-474 (615)
40 PF06552 TOM20_plant: Plant sp 95.6 0.0075 1.6E-07 46.2 2.1 58 1-58 58-123 (186)
41 TIGR02521 type_IV_pilW type IV 95.6 0.053 1.1E-06 37.8 6.2 52 9-63 132-183 (234)
42 CHL00033 ycf3 photosystem I as 95.5 0.42 9.1E-06 34.0 10.8 58 3-63 60-120 (168)
43 KOG1126|consensus 95.5 0.017 3.8E-07 51.1 4.1 34 28-61 468-501 (638)
44 TIGR02795 tol_pal_ybgF tol-pal 95.3 0.069 1.5E-06 34.4 5.6 55 2-59 26-86 (119)
45 PRK15174 Vi polysaccharide exp 95.1 0.054 1.2E-06 47.3 5.9 56 1-59 99-154 (656)
46 KOG0553|consensus 95.0 0.067 1.5E-06 43.7 5.9 58 4-64 141-198 (304)
47 PF06552 TOM20_plant: Plant sp 94.7 0.41 8.8E-06 36.7 9.1 92 2-97 15-113 (186)
48 TIGR02917 PEP_TPR_lipo putativ 94.7 0.078 1.7E-06 44.3 5.6 54 2-58 625-678 (899)
49 PF12895 Apc3: Anaphase-promot 94.6 0.027 6E-07 35.8 2.2 58 2-63 13-72 (84)
50 KOG1127|consensus 94.5 0.064 1.4E-06 50.1 5.1 56 4-61 28-83 (1238)
51 PRK11447 cellulose synthase su 94.4 0.099 2.2E-06 48.3 6.1 55 1-58 484-538 (1157)
52 PRK10049 pgaA outer membrane p 94.4 0.11 2.3E-06 46.1 6.1 58 1-61 382-439 (765)
53 TIGR02917 PEP_TPR_lipo putativ 94.2 0.12 2.5E-06 43.3 5.6 55 2-59 183-237 (899)
54 PF13429 TPR_15: Tetratricopep 94.0 0.16 3.5E-06 38.8 5.8 46 9-57 143-188 (280)
55 PRK09782 bacteriophage N4 rece 93.9 0.12 2.6E-06 47.8 5.7 57 2-61 633-689 (987)
56 KOG1173|consensus 93.9 0.15 3.2E-06 45.1 5.8 53 4-59 481-535 (611)
57 PRK15174 Vi polysaccharide exp 93.9 0.16 3.5E-06 44.3 6.1 52 4-55 238-290 (656)
58 PRK10866 outer membrane biogen 93.8 0.39 8.5E-06 37.2 7.6 53 1-56 55-110 (243)
59 PRK10747 putative protoheme IX 93.8 0.14 3.1E-06 41.7 5.4 53 2-57 318-371 (398)
60 PF13176 TPR_7: Tetratricopept 93.8 0.1 2.3E-06 28.7 3.2 29 15-46 2-30 (36)
61 KOG0553|consensus 93.8 0.07 1.5E-06 43.6 3.4 56 1-59 104-159 (304)
62 PF13371 TPR_9: Tetratricopept 93.6 0.17 3.6E-06 30.8 4.3 42 19-63 2-43 (73)
63 KOG2076|consensus 93.6 0.88 1.9E-05 42.0 10.3 31 30-60 222-252 (895)
64 PF14559 TPR_19: Tetratricopep 93.5 0.21 4.6E-06 29.9 4.6 34 30-63 6-39 (68)
65 KOG4626|consensus 93.4 0.16 3.6E-06 45.9 5.4 53 2-57 276-328 (966)
66 PRK10803 tol-pal system protei 93.3 0.65 1.4E-05 36.6 8.2 54 2-58 167-226 (263)
67 TIGR02795 tol_pal_ybgF tol-pal 93.3 0.16 3.6E-06 32.6 4.0 47 2-51 63-112 (119)
68 cd05804 StaR_like StaR_like; a 93.0 0.26 5.7E-06 38.2 5.4 42 2-46 138-179 (355)
69 PF13431 TPR_17: Tetratricopep 92.9 0.08 1.7E-06 29.2 1.8 23 38-60 2-24 (34)
70 PLN03098 LPA1 LOW PSII ACCUMUL 92.8 0.4 8.8E-06 41.2 6.6 53 7-62 70-125 (453)
71 KOG1173|consensus 92.8 0.13 2.8E-06 45.4 3.7 49 8-59 308-356 (611)
72 PF13174 TPR_6: Tetratricopept 92.6 0.26 5.7E-06 25.4 3.5 30 15-47 3-32 (33)
73 TIGR00540 hemY_coli hemY prote 91.8 0.28 6.1E-06 40.0 4.4 46 2-50 323-372 (409)
74 KOG1174|consensus 91.7 0.36 7.8E-06 41.8 5.1 53 6-61 465-517 (564)
75 PLN02789 farnesyltranstransfer 91.4 0.47 1E-05 38.4 5.3 57 3-62 133-189 (320)
76 PRK11788 tetratricopeptide rep 91.2 2.2 4.8E-05 33.4 8.7 41 14-57 182-222 (389)
77 KOG1155|consensus 90.8 1.4 3.1E-05 38.5 7.8 60 3-65 423-482 (559)
78 PF09295 ChAPs: ChAPs (Chs5p-A 90.5 0.62 1.3E-05 39.1 5.4 59 2-63 224-282 (395)
79 PF13424 TPR_12: Tetratricopep 90.4 0.49 1.1E-05 29.2 3.6 31 12-45 46-76 (78)
80 PRK09782 bacteriophage N4 rece 90.4 0.72 1.6E-05 42.8 6.1 54 2-59 600-653 (987)
81 PRK02603 photosystem I assembl 90.4 0.82 1.8E-05 32.7 5.3 51 9-62 32-85 (172)
82 PRK10049 pgaA outer membrane p 90.4 0.61 1.3E-05 41.4 5.4 53 2-58 107-159 (765)
83 cd05804 StaR_like StaR_like; a 90.2 1.1 2.3E-05 34.8 6.2 51 6-59 108-158 (355)
84 PLN02789 farnesyltranstransfer 89.8 0.73 1.6E-05 37.3 5.1 58 2-61 61-118 (320)
85 PRK15331 chaperone protein Sic 89.5 2 4.4E-05 32.3 6.9 55 6-63 65-119 (165)
86 PRK10153 DNA-binding transcrip 89.3 0.54 1.2E-05 40.5 4.2 39 7-48 415-453 (517)
87 PF13424 TPR_12: Tetratricopep 89.0 2.9 6.3E-05 25.6 6.4 31 12-45 5-35 (78)
88 TIGR03302 OM_YfiO outer membra 88.8 1.2 2.7E-05 32.7 5.3 59 2-63 139-217 (235)
89 PRK11788 tetratricopeptide rep 88.1 0.8 1.7E-05 35.9 4.1 45 2-49 204-248 (389)
90 PF13429 TPR_15: Tetratricopep 87.9 0.24 5.2E-06 37.8 1.1 48 8-58 210-257 (280)
91 KOG4626|consensus 87.9 2.2 4.8E-05 39.0 7.0 59 2-63 446-504 (966)
92 PF02259 FAT: FAT domain; Int 87.3 4.3 9.2E-05 31.3 7.7 39 29-67 272-310 (352)
93 PF13374 TPR_10: Tetratricopep 86.4 1 2.3E-05 24.1 2.9 29 15-46 5-33 (42)
94 PF10516 SHNi-TPR: SHNi-TPR; 86.1 1.4 3E-05 25.4 3.3 30 14-46 3-32 (38)
95 PRK10153 DNA-binding transcrip 86.0 1.4 3E-05 38.0 4.8 50 9-59 337-386 (517)
96 PF02064 MAS20: MAS20 protein 86.0 1.4 3E-05 31.5 4.0 31 14-47 65-95 (121)
97 KOG1126|consensus 85.8 0.78 1.7E-05 40.9 3.1 42 2-46 581-622 (638)
98 PRK10747 putative protoheme IX 85.5 18 0.0004 29.4 11.3 57 2-61 142-199 (398)
99 PRK14574 hmsH outer membrane p 85.4 1.4 3E-05 40.2 4.6 52 8-62 96-149 (822)
100 KOG0624|consensus 84.9 6.5 0.00014 33.7 8.1 55 3-60 332-386 (504)
101 COG5010 TadD Flp pilus assembl 84.1 4.3 9.3E-05 32.6 6.4 56 7-65 95-150 (257)
102 PRK15331 chaperone protein Sic 84.1 4.2 9.1E-05 30.6 6.0 46 17-65 42-87 (165)
103 PF13512 TPR_18: Tetratricopep 83.6 13 0.00027 27.3 8.2 49 9-60 44-95 (142)
104 PRK15179 Vi polysaccharide bio 83.1 3.6 7.8E-05 36.9 6.2 53 8-63 82-134 (694)
105 PF09976 TPR_21: Tetratricopep 82.9 2.1 4.6E-05 29.7 3.8 32 8-42 114-145 (145)
106 PF14561 TPR_20: Tetratricopep 82.0 2.7 5.9E-05 28.0 3.9 44 2-48 12-55 (90)
107 PRK11906 transcriptional regul 81.9 3.4 7.5E-05 35.6 5.4 47 4-53 330-376 (458)
108 COG4235 Cytochrome c biogenesi 81.8 2.6 5.5E-05 34.3 4.4 51 2-55 146-196 (287)
109 PRK14574 hmsH outer membrane p 81.8 4.1 8.8E-05 37.3 6.1 61 1-64 439-499 (822)
110 CHL00033 ycf3 photosystem I as 81.3 3.1 6.7E-05 29.4 4.2 47 2-48 96-153 (168)
111 PRK11906 transcriptional regul 80.8 2.4 5.1E-05 36.6 4.0 45 2-49 362-406 (458)
112 KOG0543|consensus 80.8 6.5 0.00014 33.4 6.5 44 2-48 281-324 (397)
113 smart00671 SEL1 Sel1-like repe 80.2 4.6 9.9E-05 21.0 3.8 31 15-45 4-35 (36)
114 PRK15179 Vi polysaccharide bio 80.0 3.8 8.2E-05 36.8 5.2 56 2-60 144-199 (694)
115 smart00386 HAT HAT (Half-A-TPR 79.9 2.5 5.4E-05 21.1 2.6 23 30-52 2-24 (33)
116 PF09976 TPR_21: Tetratricopep 79.7 8.2 0.00018 26.7 5.9 55 2-59 35-93 (145)
117 KOG0548|consensus 78.9 9.2 0.0002 33.7 7.0 37 30-66 373-409 (539)
118 PF04090 RNA_pol_I_TF: RNA pol 78.5 4.2 9.1E-05 31.4 4.4 41 17-57 43-83 (199)
119 KOG0547|consensus 78.5 2.1 4.6E-05 37.7 3.1 33 19-54 122-160 (606)
120 PF04733 Coatomer_E: Coatomer 77.3 6.8 0.00015 31.2 5.5 60 1-63 190-249 (290)
121 TIGR00985 3a0801s04tom mitocho 77.1 3.9 8.5E-05 30.2 3.7 40 15-57 93-132 (148)
122 COG5010 TadD Flp pilus assembl 76.6 4.8 0.0001 32.4 4.3 46 3-51 125-170 (257)
123 COG4783 Putative Zn-dependent 76.5 5.8 0.00013 34.5 5.1 43 3-48 331-373 (484)
124 PF08238 Sel1: Sel1 repeat; I 75.9 7 0.00015 20.7 3.8 31 15-45 4-38 (39)
125 PF04781 DUF627: Protein of un 75.8 3.5 7.7E-05 29.1 3.1 53 1-53 19-82 (111)
126 PRK14720 transcript cleavage f 74.8 3.3 7.1E-05 38.5 3.4 41 1-45 139-179 (906)
127 PF13525 YfiO: Outer membrane 74.8 31 0.00068 25.4 9.0 49 9-60 39-90 (203)
128 KOG2396|consensus 74.3 4.5 9.7E-05 35.7 3.9 53 1-55 128-180 (568)
129 PLN03098 LPA1 LOW PSII ACCUMUL 73.4 4.7 0.0001 34.8 3.8 42 1-45 98-142 (453)
130 PF12895 Apc3: Anaphase-promot 72.2 4.6 9.9E-05 25.3 2.7 33 6-41 52-84 (84)
131 PF07720 TPR_3: Tetratricopept 71.9 7.1 0.00015 21.9 3.2 29 17-48 6-36 (36)
132 KOG4162|consensus 71.0 12 0.00025 34.5 5.8 61 3-64 709-769 (799)
133 PF14853 Fis1_TPR_C: Fis1 C-te 69.9 10 0.00023 23.1 3.8 30 19-51 8-37 (53)
134 KOG0624|consensus 68.8 6.4 0.00014 33.8 3.6 44 8-54 34-77 (504)
135 PF13226 DUF4034: Domain of un 68.3 17 0.00037 29.3 5.8 58 6-63 71-147 (277)
136 KOG0495|consensus 67.8 7.3 0.00016 35.8 3.9 49 1-52 674-722 (913)
137 PF04190 DUF410: Protein of un 67.3 6.5 0.00014 30.8 3.2 28 11-41 89-116 (260)
138 KOG2002|consensus 66.9 6.3 0.00014 37.0 3.4 40 17-59 312-352 (1018)
139 KOG3024|consensus 66.8 7.3 0.00016 32.1 3.4 28 11-41 126-153 (312)
140 COG3063 PilF Tfp pilus assembl 66.5 5.5 0.00012 31.9 2.6 55 3-60 94-150 (250)
141 TIGR00540 hemY_coli hemY prote 66.4 20 0.00043 29.3 5.9 52 5-59 145-197 (409)
142 KOG3824|consensus 65.7 6.4 0.00014 33.4 2.9 48 2-52 140-187 (472)
143 KOG1174|consensus 64.0 14 0.00031 32.3 4.8 54 3-59 223-278 (564)
144 COG5191 Uncharacterized conser 63.6 3.4 7.4E-05 34.9 1.0 51 3-56 132-183 (435)
145 PF10345 Cohesin_load: Cohesin 63.4 16 0.00035 31.7 5.1 49 11-63 58-106 (608)
146 PF03704 BTAD: Bacterial trans 63.1 10 0.00022 25.9 3.2 48 14-64 64-111 (146)
147 KOG0547|consensus 62.8 7.1 0.00015 34.6 2.8 43 2-47 452-494 (606)
148 KOG1258|consensus 62.4 13 0.00028 33.1 4.3 44 6-53 73-116 (577)
149 PF10602 RPN7: 26S proteasome 62.3 11 0.00023 27.9 3.4 31 13-46 37-67 (177)
150 PF05843 Suf: Suppressor of fo 59.6 13 0.00028 29.1 3.6 46 3-50 26-71 (280)
151 PF05843 Suf: Suppressor of fo 59.2 20 0.00044 28.0 4.6 55 2-59 60-116 (280)
152 PF10373 EST1_DNA_bind: Est1 D 58.8 10 0.00022 28.4 2.8 56 2-61 6-62 (278)
153 COG1729 Uncharacterized protei 58.7 21 0.00046 28.6 4.7 51 11-64 177-230 (262)
154 PF07721 TPR_4: Tetratricopept 58.3 15 0.00033 18.5 2.6 23 14-39 3-25 (26)
155 PF12569 NARP1: NMDA receptor- 57.8 27 0.00058 30.4 5.5 45 12-59 38-82 (517)
156 PF08631 SPO22: Meiosis protei 57.6 56 0.0012 25.4 6.9 37 9-45 25-66 (278)
157 KOG2076|consensus 56.9 18 0.00038 33.8 4.4 49 1-53 162-210 (895)
158 KOG1127|consensus 55.9 48 0.001 31.9 7.0 42 4-48 588-629 (1238)
159 KOG0548|consensus 55.6 30 0.00066 30.6 5.4 58 3-63 417-474 (539)
160 KOG1129|consensus 55.5 13 0.00028 31.8 3.1 45 3-50 281-325 (478)
161 KOG4642|consensus 55.4 21 0.00045 29.1 4.1 56 3-61 35-90 (284)
162 PF12688 TPR_5: Tetratrico pep 54.3 59 0.0013 22.7 5.9 48 15-65 4-54 (120)
163 PF15349 DCA16: DDB1- and CUL4 54.3 6.6 0.00014 29.8 1.1 14 7-20 69-82 (216)
164 KOG4162|consensus 53.0 67 0.0014 29.8 7.3 57 1-60 467-524 (799)
165 PF09986 DUF2225: Uncharacteri 52.8 16 0.00036 27.9 3.1 30 14-46 167-196 (214)
166 KOG4056|consensus 52.6 20 0.00044 26.5 3.4 31 16-49 85-115 (143)
167 COG0457 NrfG FOG: TPR repeat [ 51.3 53 0.0012 20.9 4.9 30 30-59 182-212 (291)
168 KOG1128|consensus 48.9 33 0.00071 31.6 4.7 59 8-66 453-536 (777)
169 KOG1840|consensus 48.5 58 0.0013 28.5 6.0 37 8-47 279-315 (508)
170 KOG2758|consensus 47.4 23 0.0005 30.1 3.3 38 15-55 132-173 (432)
171 KOG1840|consensus 47.0 21 0.00045 31.1 3.1 35 9-46 364-398 (508)
172 PF02259 FAT: FAT domain; Int 47.0 20 0.00042 27.6 2.7 49 2-50 282-344 (352)
173 KOG1125|consensus 46.4 33 0.00073 30.6 4.3 44 6-52 422-467 (579)
174 PRK14720 transcript cleavage f 46.4 35 0.00076 31.9 4.6 45 5-52 109-153 (906)
175 PF14938 SNAP: Soluble NSF att 45.9 21 0.00045 27.7 2.7 31 13-46 115-146 (282)
176 PRK10803 tol-pal system protei 45.7 41 0.00088 26.5 4.4 37 10-49 215-251 (263)
177 cd08806 CARD_CARD14_CARMA2 Cas 45.1 27 0.00059 23.7 2.8 39 2-45 36-77 (86)
178 KOG1070|consensus 43.9 2.4E+02 0.0053 28.4 9.7 41 2-45 1448-1488(1710)
179 KOG4234|consensus 43.7 25 0.00055 28.2 2.9 17 30-46 110-126 (271)
180 KOG2002|consensus 42.4 3.2E+02 0.0069 26.3 10.0 53 10-65 714-766 (1018)
181 PF03704 BTAD: Bacterial trans 42.3 1.1E+02 0.0023 20.7 8.6 36 3-41 87-122 (146)
182 KOG0495|consensus 42.2 38 0.00081 31.4 4.0 44 9-55 814-857 (913)
183 COG3071 HemY Uncharacterized e 41.6 50 0.0011 28.2 4.5 48 2-52 318-366 (400)
184 PF11626 Rap1_C: TRF2-interact 41.5 21 0.00045 23.5 1.8 29 22-53 19-50 (87)
185 PF08424 NRDE-2: NRDE-2, neces 39.7 1E+02 0.0022 24.7 5.8 64 2-65 9-81 (321)
186 PF11846 DUF3366: Domain of un 39.4 60 0.0013 23.6 4.2 41 2-46 135-175 (193)
187 PF10300 DUF3808: Protein of u 38.4 2.5E+02 0.0054 23.8 8.4 36 5-43 260-295 (468)
188 COG4700 Uncharacterized protei 37.8 54 0.0012 26.1 3.8 47 11-60 159-206 (251)
189 COG2956 Predicted N-acetylgluc 34.8 57 0.0012 27.7 3.8 42 10-51 175-216 (389)
190 PF09418 DUF2009: Protein of u 34.7 1.1E+02 0.0024 26.6 5.6 29 78-106 177-205 (458)
191 COG4785 NlpI Lipoprotein NlpI, 33.4 77 0.0017 25.8 4.2 40 5-47 92-131 (297)
192 PF08928 DUF1910: Domain of un 33.3 1.5E+02 0.0033 19.9 5.3 46 14-59 51-101 (117)
193 KOG4555|consensus 33.1 41 0.00089 25.4 2.4 22 30-51 58-79 (175)
194 PF12688 TPR_5: Tetratrico pep 33.0 74 0.0016 22.2 3.6 48 9-59 35-87 (120)
195 PF12862 Apc5: Anaphase-promot 31.8 66 0.0014 20.9 3.1 29 15-46 44-72 (94)
196 KOG0543|consensus 30.9 80 0.0017 27.0 4.1 46 15-63 260-305 (397)
197 PRK10941 hypothetical protein; 30.4 1.1E+02 0.0024 24.3 4.7 18 30-47 196-213 (269)
198 KOG4234|consensus 30.4 56 0.0012 26.3 2.9 48 3-53 120-172 (271)
199 KOG0551|consensus 30.4 1.1E+02 0.0024 26.1 4.7 35 30-64 134-168 (390)
200 KOG1156|consensus 29.9 1.1E+02 0.0024 28.0 4.9 41 19-62 226-266 (700)
201 KOG0550|consensus 29.2 65 0.0014 28.1 3.3 46 17-63 47-96 (486)
202 KOG4507|consensus 28.6 60 0.0013 29.9 3.1 41 8-51 672-712 (886)
203 PRK15338 type III secretion sy 28.3 43 0.00092 28.4 2.0 31 30-60 167-197 (372)
204 cd02683 MIT_1 MIT: domain cont 27.8 45 0.00098 21.6 1.7 15 30-44 21-35 (77)
205 cd08807 CARD_CARD10_CARMA3 Cas 27.5 83 0.0018 21.4 3.0 38 2-44 36-76 (86)
206 KOG1129|consensus 27.3 25 0.00054 30.2 0.5 54 3-59 315-368 (478)
207 KOG3824|consensus 27.3 1.3E+02 0.0029 25.7 4.7 43 14-59 118-162 (472)
208 PF08969 USP8_dimer: USP8 dime 27.0 77 0.0017 21.5 2.8 25 18-45 44-68 (115)
209 PHA01757 hypothetical protein 26.8 2E+02 0.0044 19.6 4.7 16 50-65 8-23 (98)
210 cd08809 CARD_CARD9 Caspase act 25.4 90 0.0019 21.2 2.8 39 2-45 36-77 (86)
211 PHA02537 M terminase endonucle 25.2 1.2E+02 0.0026 23.9 3.9 20 28-47 191-210 (230)
212 PF08311 Mad3_BUB1_I: Mad3/BUB 25.2 1.6E+02 0.0034 20.5 4.2 29 11-42 98-126 (126)
213 KOG3617|consensus 25.1 2.9E+02 0.0062 26.8 6.8 91 9-107 1077-1184(1416)
214 PF10952 DUF2753: Protein of u 24.6 2.9E+02 0.0063 20.3 7.5 80 14-98 3-90 (140)
215 COG4700 Uncharacterized protei 24.1 1E+02 0.0022 24.6 3.3 48 5-56 83-131 (251)
216 KOG0550|consensus 24.1 1.9E+02 0.0042 25.3 5.2 44 19-65 256-303 (486)
217 cd02684 MIT_2 MIT: domain cont 23.8 50 0.0011 21.2 1.3 15 30-44 21-35 (75)
218 cd08776 DED_Caspase-like_repea 23.1 63 0.0014 21.0 1.7 20 16-38 52-71 (71)
219 PF12569 NARP1: NMDA receptor- 22.9 1.2E+02 0.0026 26.4 3.9 42 2-46 218-259 (517)
220 KOG2047|consensus 22.8 1.8E+02 0.0038 27.1 4.9 48 9-56 544-592 (835)
221 PF09797 NatB_MDM20: N-acetylt 21.9 1.2E+02 0.0027 24.3 3.6 35 1-38 206-240 (365)
222 cd02678 MIT_VPS4 MIT: domain c 21.5 74 0.0016 20.0 1.8 16 30-45 21-36 (75)
223 PF04212 MIT: MIT (microtubule 21.0 75 0.0016 19.4 1.7 15 30-44 20-34 (69)
224 PF11817 Foie-gras_1: Foie gra 20.2 1.4E+02 0.003 22.8 3.4 25 14-41 180-204 (247)
225 cd08808 CARD_CARD11_CARMA1 Cas 20.0 1.3E+02 0.0029 20.4 2.8 39 2-45 36-77 (86)
No 1
>KOG3060|consensus
Probab=99.97 E-value=3.7e-31 Score=209.27 Aligned_cols=111 Identities=35% Similarity=0.565 Sum_probs=101.3
Q ss_pred CccchhcCCCCHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhccCCCchHHHHhHHHHHHHHHhhhhhhhhhHHh--HHH
Q psy14212 1 MEELFLHHPHNHLLHQRYADILYTQGGLENIELAISHYLMAINLNEKNIRALYGLALSCHQVLTSAKCSAAKKKE--ISK 78 (111)
Q Consensus 1 ~EEvlL~~P~n~~~h~rlAEi~Yt~Gg~enl~~A~kyf~~aleL~~~~lRalyGL~l~~~~l~~~~k~~~~~~~e--~~k 78 (111)
||||+|++|+||.||+||||++||+||.||++.||||||+||++||.|+|||||+++|+++|.+.+|...+++++ ..+
T Consensus 177 lEE~ll~~P~n~l~f~rlae~~Yt~gg~eN~~~arkyy~~alkl~~~~~ral~GI~lc~~~la~~sk~~~k~~K~~a~~~ 256 (289)
T KOG3060|consen 177 LEELLLIQPFNPLYFQRLAEVLYTQGGAENLELARKYYERALKLNPKNLRALFGIYLCGSALAQISKAELKRKKDVAAPD 256 (289)
T ss_pred HHHHHHcCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhChHhHHHHHHHHHHHHHHHHHhHHHHhhhhhhhhhh
Confidence 699999999999999999999999999999999999999999999999999999999999999999888877777 569
Q ss_pred HHHHHHHHHHHHHHhhcCChhHHHHHHhhccCC
Q psy14212 79 QMMWVSKHLARQYEEQQGNTETLTELMSALQVS 111 (111)
Q Consensus 79 L~~~A~~~L~~~Y~~~~~~~~~~~~~l~~~~~~ 111 (111)
+..||..++.++|+...+++..++++|..++|+
T Consensus 257 l~~~aas~l~r~~q~s~~~~d~i~~~l~~lKi~ 289 (289)
T KOG3060|consen 257 LISLAASQLERISQKSKNKLDLITAALENLKIT 289 (289)
T ss_pred HHHhHHHHHHHHHHhccchhhHHHHHHHHhccC
Confidence 999999999999944333344899999999885
No 2
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=97.88 E-value=5.8e-05 Score=46.23 Aligned_cols=50 Identities=30% Similarity=0.392 Sum_probs=45.5
Q ss_pred CHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhccCCCchHHHHhHHHHHHHHH
Q psy14212 11 NHLLHQRYADILYTQGGLENIELAISHYLMAINLNEKNIRALYGLALSCHQVL 63 (111)
Q Consensus 11 n~~~h~rlAEi~Yt~Gg~enl~~A~kyf~~aleL~~~~lRalyGL~l~~~~l~ 63 (111)
+...+..+|.+++..| +++.|+++|.++|+++|++..++|++-.|...+.
T Consensus 2 ~a~~~~~~g~~~~~~~---~~~~A~~~~~~ai~~~p~~~~~~~~~g~~~~~~~ 51 (69)
T PF13414_consen 2 NAEAWYNLGQIYFQQG---DYEEAIEYFEKAIELDPNNAEAYYNLGLAYMKLG 51 (69)
T ss_dssp SHHHHHHHHHHHHHTT---HHHHHHHHHHHHHHHSTTHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHcC---CHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhC
Confidence 5678889999999999 9999999999999999999999999999976554
No 3
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=97.85 E-value=1.8e-05 Score=48.21 Aligned_cols=43 Identities=28% Similarity=0.407 Sum_probs=20.2
Q ss_pred cchhcCCCCHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhccCCCc
Q psy14212 3 ELFLHHPHNHLLHQRYADILYTQGGLENIELAISHYLMAINLNEKN 48 (111)
Q Consensus 3 EvlL~~P~n~~~h~rlAEi~Yt~Gg~enl~~A~kyf~~aleL~~~~ 48 (111)
+++-..|.++..+..+|.+++..| +++.|+.+|.++++++|++
T Consensus 22 ~~l~~~P~~~~a~~~lg~~~~~~g---~~~~A~~~~~~a~~~~P~~ 64 (65)
T PF13432_consen 22 QALKQDPDNPEAWYLLGRILYQQG---RYDEALAYYERALELDPDN 64 (65)
T ss_dssp HHHCCSTTHHHHHHHHHHHHHHTT----HHHHHHHHHHHHHHSTT-
T ss_pred HHHHHCCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHHHCcCC
Confidence 344444555555555555555444 4455555555555544443
No 4
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=97.71 E-value=8.6e-05 Score=52.81 Aligned_cols=59 Identities=17% Similarity=0.169 Sum_probs=46.8
Q ss_pred ccchhcCCCCHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhccCCCchHHHHhHHHHHHHHH
Q psy14212 2 EELFLHHPHNHLLHQRYADILYTQGGLENIELAISHYLMAINLNEKNIRALYGLALSCHQVL 63 (111)
Q Consensus 2 EEvlL~~P~n~~~h~rlAEi~Yt~Gg~enl~~A~kyf~~aleL~~~~lRalyGL~l~~~~l~ 63 (111)
..++-.+|.++.+|..+|.++...| +++.|...|.++++++|++..++|++-.|-..+.
T Consensus 48 ~~al~~~P~~~~a~~~lg~~~~~~g---~~~~A~~~y~~Al~l~p~~~~a~~~lg~~l~~~g 106 (144)
T PRK15359 48 SWLVMAQPWSWRAHIALAGTWMMLK---EYTTAINFYGHALMLDASHPEPVYQTGVCLKMMG 106 (144)
T ss_pred HHHHHcCCCcHHHHHHHHHHHHHHh---hHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHcC
Confidence 3466778888888888888888888 7888888888888888888888888877766443
No 5
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=97.59 E-value=8.5e-05 Score=45.85 Aligned_cols=48 Identities=23% Similarity=0.282 Sum_probs=42.5
Q ss_pred CccchhcCCCCHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhccCCCchHH
Q psy14212 1 MEELFLHHPHNHLLHQRYADILYTQGGLENIELAISHYLMAINLNEKNIRA 51 (111)
Q Consensus 1 ~EEvlL~~P~n~~~h~rlAEi~Yt~Gg~enl~~A~kyf~~aleL~~~~lRa 51 (111)
+|.++.++|.++..+..+|.+++.+| ++..|+..|.++++++|++.-+
T Consensus 18 ~~~~l~~~p~~~~~~~~~a~~~~~~g---~~~~A~~~l~~~l~~~p~~~~~ 65 (73)
T PF13371_consen 18 LERALELDPDDPELWLQRARCLFQLG---RYEEALEDLERALELSPDDPDA 65 (73)
T ss_pred HHHHHHhCcccchhhHHHHHHHHHhc---cHHHHHHHHHHHHHHCCCcHHH
Confidence 36788899999999999999999999 9999999999999999976543
No 6
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....
Probab=97.57 E-value=0.00018 Score=38.38 Aligned_cols=33 Identities=27% Similarity=0.312 Sum_probs=29.0
Q ss_pred HHHHHHHHHHHhcCCcccHHHHHHHHHHHhccCCCc
Q psy14212 13 LLHQRYADILYTQGGLENIELAISHYLMAINLNEKN 48 (111)
Q Consensus 13 ~~h~rlAEi~Yt~Gg~enl~~A~kyf~~aleL~~~~ 48 (111)
-++..+|.+++-.| ++..|+++|-++++++|+|
T Consensus 2 ~~~~~lg~~~~~~~---~~~~A~~~~~~al~l~p~~ 34 (34)
T PF07719_consen 2 EAWYYLGQAYYQLG---NYEEAIEYFEKALELDPNN 34 (34)
T ss_dssp HHHHHHHHHHHHTT----HHHHHHHHHHHHHHSTTS
T ss_pred HHHHHHHHHHHHhC---CHHHHHHHHHHHHHHCcCC
Confidence 35678899999999 9999999999999999986
No 7
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=97.47 E-value=0.00013 Score=44.68 Aligned_cols=44 Identities=20% Similarity=0.227 Sum_probs=40.1
Q ss_pred CccchhcCCCCHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhccCC
Q psy14212 1 MEELFLHHPHNHLLHQRYADILYTQGGLENIELAISHYLMAINLNE 46 (111)
Q Consensus 1 ~EEvlL~~P~n~~~h~rlAEi~Yt~Gg~enl~~A~kyf~~aleL~~ 46 (111)
++++|.++|+++..|..+|.+++-+| ++.+.|+++|.+|++++|
T Consensus 26 ~~~ai~~~p~~~~~~~~~g~~~~~~~--~~~~~A~~~~~~al~l~P 69 (69)
T PF13414_consen 26 FEKAIELDPNNAEAYYNLGLAYMKLG--KDYEEAIEDFEKALKLDP 69 (69)
T ss_dssp HHHHHHHSTTHHHHHHHHHHHHHHTT--THHHHHHHHHHHHHHHST
T ss_pred HHHHHHcCCCCHHHHHHHHHHHHHhC--ccHHHHHHHHHHHHHcCc
Confidence 36788999999999999999999888 369999999999999998
No 8
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....
Probab=97.38 E-value=0.00039 Score=37.49 Aligned_cols=32 Identities=22% Similarity=0.348 Sum_probs=28.2
Q ss_pred HHHHHHHHHHhcCCcccHHHHHHHHHHHhccCCCc
Q psy14212 14 LHQRYADILYTQGGLENIELAISHYLMAINLNEKN 48 (111)
Q Consensus 14 ~h~rlAEi~Yt~Gg~enl~~A~kyf~~aleL~~~~ 48 (111)
.+.++|.+++.+| +++.|..+|.+||+++|+|
T Consensus 3 ~~~~~g~~~~~~~---~~~~A~~~~~~al~~~p~~ 34 (34)
T PF00515_consen 3 AYYNLGNAYFQLG---DYEEALEYYQRALELDPDN 34 (34)
T ss_dssp HHHHHHHHHHHTT----HHHHHHHHHHHHHHSTTH
T ss_pred HHHHHHHHHHHhC---CchHHHHHHHHHHHHCcCC
Confidence 4678899999999 9999999999999999975
No 9
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=97.35 E-value=0.00055 Score=39.54 Aligned_cols=40 Identities=20% Similarity=0.083 Sum_probs=36.3
Q ss_pred HHHHHHHHHHhcCCcccHHHHHHHHHHHhccCCCchHHHHhHH
Q psy14212 14 LHQRYADILYTQGGLENIELAISHYLMAINLNEKNIRALYGLA 56 (111)
Q Consensus 14 ~h~rlAEi~Yt~Gg~enl~~A~kyf~~aleL~~~~lRalyGL~ 56 (111)
.+..+|+++.-.| +++.|++.|.++|+++|+|..+++.+-
T Consensus 3 ~~~~la~~~~~~G---~~~~A~~~~~~~l~~~P~~~~a~~~La 42 (44)
T PF13428_consen 3 AWLALARAYRRLG---QPDEAERLLRRALALDPDDPEAWRALA 42 (44)
T ss_pred HHHHHHHHHHHcC---CHHHHHHHHHHHHHHCcCCHHHHHHhh
Confidence 4567899999999 999999999999999999999998764
No 10
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=97.34 E-value=0.0003 Score=42.76 Aligned_cols=44 Identities=18% Similarity=0.162 Sum_probs=34.2
Q ss_pred ccchhcCCCCHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhccCCCc
Q psy14212 2 EELFLHHPHNHLLHQRYADILYTQGGLENIELAISHYLMAINLNEKN 48 (111)
Q Consensus 2 EEvlL~~P~n~~~h~rlAEi~Yt~Gg~enl~~A~kyf~~aleL~~~~ 48 (111)
++++-.+|+|.-+...+|++++..| +++.|+..+.+.++.+|++
T Consensus 15 ~~~l~~~p~~~~~~~~la~~~~~~g---~~~~A~~~l~~~~~~~~~~ 58 (68)
T PF14559_consen 15 EKALQRNPDNPEARLLLAQCYLKQG---QYDEAEELLERLLKQDPDN 58 (68)
T ss_dssp HHHHHHTTTSHHHHHHHHHHHHHTT----HHHHHHHHHCCHGGGTTH
T ss_pred HHHHHHCCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHHHCcCH
Confidence 5667778888888888888888887 7888888888888888876
No 11
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=97.33 E-value=0.00033 Score=55.59 Aligned_cols=57 Identities=30% Similarity=0.365 Sum_probs=51.7
Q ss_pred CccchhcCCCCHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhccCCCchHHH--HhHHHHHH
Q psy14212 1 MEELFLHHPHNHLLHQRYADILYTQGGLENIELAISHYLMAINLNEKNIRAL--YGLALSCH 60 (111)
Q Consensus 1 ~EEvlL~~P~n~~~h~rlAEi~Yt~Gg~enl~~A~kyf~~aleL~~~~lRal--yGL~l~~~ 60 (111)
+|++|-++|+++..|.-+|.++=+.| ..+.|.++|-+|+.+.|+|-+-+ ||-+||..
T Consensus 58 lekAL~~DPs~~~a~~~~A~~Yq~~G---e~~~A~e~YrkAlsl~p~~GdVLNNYG~FLC~q 116 (250)
T COG3063 58 LEKALEHDPSYYLAHLVRAHYYQKLG---ENDLADESYRKALSLAPNNGDVLNNYGAFLCAQ 116 (250)
T ss_pred HHHHHHhCcccHHHHHHHHHHHHHcC---ChhhHHHHHHHHHhcCCCccchhhhhhHHHHhC
Confidence 58899999999999999999999999 78999999999999999755554 99999975
No 12
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=97.31 E-value=0.0013 Score=38.63 Aligned_cols=52 Identities=29% Similarity=0.395 Sum_probs=27.8
Q ss_pred cchhcCCCCHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhccCCCchHHHHhHHH
Q psy14212 3 ELFLHHPHNHLLHQRYADILYTQGGLENIELAISHYLMAINLNEKNIRALYGLAL 57 (111)
Q Consensus 3 EvlL~~P~n~~~h~rlAEi~Yt~Gg~enl~~A~kyf~~aleL~~~~lRalyGL~l 57 (111)
+++-..|.++..+..+|.+++..| +++.|.++|.+++++.|.+..+++.+-.
T Consensus 25 ~~~~~~~~~~~~~~~~~~~~~~~~---~~~~a~~~~~~~~~~~~~~~~~~~~~~~ 76 (100)
T cd00189 25 KALELDPDNADAYYNLAAAYYKLG---KYEEALEDYEKALELDPDNAKAYYNLGL 76 (100)
T ss_pred HHHhcCCccHHHHHHHHHHHHHHH---HHHHHHHHHHHHHhCCCcchhHHHHHHH
Confidence 344445555555555555555554 5555555555555555555544444433
No 13
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=97.14 E-value=0.0017 Score=43.94 Aligned_cols=59 Identities=22% Similarity=0.263 Sum_probs=48.7
Q ss_pred ccchhcCCCCHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhccCCCchHHHHhHHHHHHHHH
Q psy14212 2 EELFLHHPHNHLLHQRYADILYTQGGLENIELAISHYLMAINLNEKNIRALYGLALSCHQVL 63 (111)
Q Consensus 2 EEvlL~~P~n~~~h~rlAEi~Yt~Gg~enl~~A~kyf~~aleL~~~~lRalyGL~l~~~~l~ 63 (111)
+.++-.+|.+...+..+|..++..| ++..|...|.++++++|++.++++.+-.|.....
T Consensus 7 ~~~l~~~p~~~~~~~~~a~~~~~~~---~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~~ 65 (135)
T TIGR02552 7 KDLLGLDSEQLEQIYALAYNLYQQG---RYDEALKLFQLLAAYDPYNSRYWLGLAACCQMLK 65 (135)
T ss_pred HHHHcCChhhHHHHHHHHHHHHHcc---cHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHH
Confidence 4677788888888888888888888 8888999999999988988888888877766543
No 14
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=97.12 E-value=0.0015 Score=46.37 Aligned_cols=48 Identities=13% Similarity=0.025 Sum_probs=44.6
Q ss_pred ccchhcCCCCHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhccCCCchHHH
Q psy14212 2 EELFLHHPHNHLLHQRYADILYTQGGLENIELAISHYLMAINLNEKNIRAL 52 (111)
Q Consensus 2 EEvlL~~P~n~~~h~rlAEi~Yt~Gg~enl~~A~kyf~~aleL~~~~lRal 52 (111)
+.++-++|.++..|..+|.++...| +++.|++.|.++++++|++...+
T Consensus 82 ~~Al~l~p~~~~a~~~lg~~l~~~g---~~~eAi~~~~~Al~~~p~~~~~~ 129 (144)
T PRK15359 82 GHALMLDASHPEPVYQTGVCLKMMG---EPGLAREAFQTAIKMSYADASWS 129 (144)
T ss_pred HHHHhcCCCCcHHHHHHHHHHHHcC---CHHHHHHHHHHHHHhCCCChHHH
Confidence 5677899999999999999999999 99999999999999999988776
No 15
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=97.10 E-value=0.0015 Score=53.08 Aligned_cols=61 Identities=20% Similarity=0.180 Sum_probs=50.3
Q ss_pred CccchhcCCCCHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhccCCCchHHHHhHHHHHHHHHh
Q psy14212 1 MEELFLHHPHNHLLHQRYADILYTQGGLENIELAISHYLMAINLNEKNIRALYGLALSCHQVLT 64 (111)
Q Consensus 1 ~EEvlL~~P~n~~~h~rlAEi~Yt~Gg~enl~~A~kyf~~aleL~~~~lRalyGL~l~~~~l~~ 64 (111)
|+++|-.+|.+..++..+|.+++-.| ++..|+..|.++|+++|++..+++-+-.+..++.+
T Consensus 25 ~~~Al~~~P~~~~a~~~~a~~~~~~g---~~~eAl~~~~~Al~l~P~~~~a~~~lg~~~~~lg~ 85 (356)
T PLN03088 25 YTQAIDLDPNNAELYADRAQANIKLG---NFTEAVADANKAIELDPSLAKAYLRKGTACMKLEE 85 (356)
T ss_pred HHHHHHhCCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHhCC
Confidence 35678888999999988899988888 88899999999999999888888877776666543
No 16
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=97.05 E-value=0.0015 Score=48.92 Aligned_cols=54 Identities=17% Similarity=0.190 Sum_probs=46.9
Q ss_pred ccchhcCCCCHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhccCCCchHHHHhHHHH
Q psy14212 2 EELFLHHPHNHLLHQRYADILYTQGGLENIELAISHYLMAINLNEKNIRALYGLALS 58 (111)
Q Consensus 2 EEvlL~~P~n~~~h~rlAEi~Yt~Gg~enl~~A~kyf~~aleL~~~~lRalyGL~l~ 58 (111)
+..+-.+|.|.-.+..+|.++...| +++.|...|.+++++.|++...++++-.+
T Consensus 63 ~~~L~~~P~~~~~w~~Lg~~~~~~g---~~~~A~~a~~~Al~l~P~~~~~~~~lA~a 116 (198)
T PRK10370 63 QDKIRANPQNSEQWALLGEYYLWRN---DYDNALLAYRQALQLRGENAELYAALATV 116 (198)
T ss_pred HHHHHHCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Confidence 4567788999999999999999888 89999999999999999998888887665
No 17
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=97.05 E-value=0.0015 Score=44.22 Aligned_cols=57 Identities=21% Similarity=0.135 Sum_probs=50.4
Q ss_pred ccchhcCCCCHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhccCCCchHHHHhHHHHHHH
Q psy14212 2 EELFLHHPHNHLLHQRYADILYTQGGLENIELAISHYLMAINLNEKNIRALYGLALSCHQ 61 (111)
Q Consensus 2 EEvlL~~P~n~~~h~rlAEi~Yt~Gg~enl~~A~kyf~~aleL~~~~lRalyGL~l~~~~ 61 (111)
+.++-.+|.++..+..+|.+++.+| +...|.++|.++++++|++...+|-+-.|...
T Consensus 41 ~~~~~~~p~~~~~~~~la~~~~~~~---~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~ 97 (135)
T TIGR02552 41 QLLAAYDPYNSRYWLGLAACCQMLK---EYEEAIDAYALAAALDPDDPRPYFHAAECLLA 97 (135)
T ss_pred HHHHHhCCCcHHHHHHHHHHHHHHH---HHHHHHHHHHHHHhcCCCChHHHHHHHHHHHH
Confidence 4566779999999999999999999 99999999999999999999888877766553
No 18
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=96.95 E-value=0.002 Score=48.29 Aligned_cols=62 Identities=21% Similarity=0.158 Sum_probs=51.9
Q ss_pred ccchhcCCCCHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhccCCCchHHHHhHHHHHHHHH
Q psy14212 2 EELFLHHPHNHLLHQRYADILYTQGGLENIELAISHYLMAINLNEKNIRALYGLALSCHQVL 63 (111)
Q Consensus 2 EEvlL~~P~n~~~h~rlAEi~Yt~Gg~enl~~A~kyf~~aleL~~~~lRalyGL~l~~~~l~ 63 (111)
+.++-+.|.+..++..+|.++|..+|....+.|++.|.++++++|++.++++-+-++.....
T Consensus 97 ~~Al~l~P~~~~~~~~lA~aL~~~~g~~~~~~A~~~l~~al~~dP~~~~al~~LA~~~~~~g 158 (198)
T PRK10370 97 RQALQLRGENAELYAALATVLYYQAGQHMTPQTREMIDKALALDANEVTALMLLASDAFMQA 158 (198)
T ss_pred HHHHHhCCCCHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhCCCChhHHHHHHHHHHHcC
Confidence 56788999999999999999865544334699999999999999999999998877776443
No 19
>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A ....
Probab=96.94 E-value=0.0013 Score=35.20 Aligned_cols=32 Identities=25% Similarity=0.279 Sum_probs=28.2
Q ss_pred HHHHHHHHHHhcCCcccHHHHHHHHHHHhccCCCc
Q psy14212 14 LHQRYADILYTQGGLENIELAISHYLMAINLNEKN 48 (111)
Q Consensus 14 ~h~rlAEi~Yt~Gg~enl~~A~kyf~~aleL~~~~ 48 (111)
.+..+|.++...| +++.|.++|-++++++|+|
T Consensus 3 ~~~~lg~~y~~~~---~~~~A~~~~~~a~~~~~~n 34 (34)
T PF13181_consen 3 AYYNLGKIYEQLG---DYEEALEYFEKALELNPDN 34 (34)
T ss_dssp HHHHHHHHHHHTT---SHHHHHHHHHHHHHHHTT-
T ss_pred HHHHHHHHHHHcC---CHHHHHHHHHHHHhhCCCC
Confidence 5677899999988 9999999999999999965
No 20
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=96.90 E-value=0.0043 Score=37.50 Aligned_cols=43 Identities=30% Similarity=0.331 Sum_probs=39.2
Q ss_pred HHHHHHHhcCCcccHHHHHHHHHHHhccCCCchHHHHhHHHHHHHH
Q psy14212 17 RYADILYTQGGLENIELAISHYLMAINLNEKNIRALYGLALSCHQV 62 (111)
Q Consensus 17 rlAEi~Yt~Gg~enl~~A~kyf~~aleL~~~~lRalyGL~l~~~~l 62 (111)
.+|..+|..| +++.|++.|.++++..|++..++|++-.|..+.
T Consensus 2 ~~a~~~~~~g---~~~~A~~~~~~~l~~~P~~~~a~~~lg~~~~~~ 44 (65)
T PF13432_consen 2 ALARALYQQG---DYDEAIAAFEQALKQDPDNPEAWYLLGRILYQQ 44 (65)
T ss_dssp HHHHHHHHCT---HHHHHHHHHHHHHCCSTTHHHHHHHHHHHHHHT
T ss_pred hHHHHHHHcC---CHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHc
Confidence 4689999999 999999999999999999999999999887643
No 21
>PRK12370 invasion protein regulator; Provisional
Probab=96.87 E-value=0.0026 Score=54.07 Aligned_cols=55 Identities=9% Similarity=-0.136 Sum_probs=38.0
Q ss_pred ccchhcCCCCHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhccCCCchHHHHhHHHHH
Q psy14212 2 EELFLHHPHNHLLHQRYADILYTQGGLENIELAISHYLMAINLNEKNIRALYGLALSC 59 (111)
Q Consensus 2 EEvlL~~P~n~~~h~rlAEi~Yt~Gg~enl~~A~kyf~~aleL~~~~lRalyGL~l~~ 59 (111)
+.++-++|++...|..+|.++...| +++.|..+|.+|++++|++..++|.+-.+.
T Consensus 328 ~~Al~ldP~~~~a~~~lg~~~~~~g---~~~~A~~~~~~Al~l~P~~~~a~~~lg~~l 382 (553)
T PRK12370 328 IKATELDHNNPQALGLLGLINTIHS---EYIVGSLLFKQANLLSPISADIKYYYGWNL 382 (553)
T ss_pred HHHHhcCCCCHHHHHHHHHHHHHcc---CHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Confidence 4456667777777777777777666 677777777777777777777666554443
No 22
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=96.76 E-value=0.0039 Score=50.63 Aligned_cols=60 Identities=8% Similarity=-0.068 Sum_probs=55.1
Q ss_pred ccchhcCCCCHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhccCCCchHHHHhHHHHHHHHHh
Q psy14212 2 EELFLHHPHNHLLHQRYADILYTQGGLENIELAISHYLMAINLNEKNIRALYGLALSCHQVLT 64 (111)
Q Consensus 2 EEvlL~~P~n~~~h~rlAEi~Yt~Gg~enl~~A~kyf~~aleL~~~~lRalyGL~l~~~~l~~ 64 (111)
+.++-++|.++..|.++|.+++.+| +++.|+.+|.++++++|++.++..-+..|-.+|..
T Consensus 60 ~~Al~l~P~~~~a~~~lg~~~~~lg---~~~eA~~~~~~al~l~P~~~~~~~~l~~~~~kl~~ 119 (356)
T PLN03088 60 NKAIELDPSLAKAYLRKGTACMKLE---EYQTAKAALEKGASLAPGDSRFTKLIKECDEKIAE 119 (356)
T ss_pred HHHHHhCcCCHHHHHHHHHHHHHhC---CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHh
Confidence 5678899999999999999999999 99999999999999999999999988888888864
No 23
>PRK11189 lipoprotein NlpI; Provisional
Probab=96.72 E-value=0.004 Score=48.90 Aligned_cols=50 Identities=14% Similarity=0.076 Sum_probs=24.1
Q ss_pred chhcCCCCHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhccCCCchHHHHhHH
Q psy14212 4 LFLHHPHNHLLHQRYADILYTQGGLENIELAISHYLMAINLNEKNIRALYGLA 56 (111)
Q Consensus 4 vlL~~P~n~~~h~rlAEi~Yt~Gg~enl~~A~kyf~~aleL~~~~lRalyGL~ 56 (111)
++-.+|.++..+..+|.++...| +++.|...|.++++++|++.-+++++-
T Consensus 90 Al~l~P~~~~a~~~lg~~~~~~g---~~~~A~~~~~~Al~l~P~~~~a~~~lg 139 (296)
T PRK11189 90 ALALRPDMADAYNYLGIYLTQAG---NFDAAYEAFDSVLELDPTYNYAYLNRG 139 (296)
T ss_pred HHHcCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHHhCCCCHHHHHHHH
Confidence 34444555555555554444444 444555555555555554444444433
No 24
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=96.69 E-value=0.0052 Score=42.97 Aligned_cols=54 Identities=22% Similarity=0.214 Sum_probs=42.9
Q ss_pred ccchhcCCCCHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhccCCCchHHHHhHHHH
Q psy14212 2 EELFLHHPHNHLLHQRYADILYTQGGLENIELAISHYLMAINLNEKNIRALYGLALS 58 (111)
Q Consensus 2 EEvlL~~P~n~~~h~rlAEi~Yt~Gg~enl~~A~kyf~~aleL~~~~lRalyGL~l~ 58 (111)
++++-..|.+...+..+|.+++..| ++..|+++|.+++++.|++..+++.+-.+
T Consensus 55 ~~~l~~~p~~~~~~~~la~~~~~~~---~~~~A~~~~~~al~~~~~~~~~~~~~~~~ 108 (234)
T TIGR02521 55 DKALEHDPDDYLAYLALALYYQQLG---ELEKAEDSFRRALTLNPNNGDVLNNYGTF 108 (234)
T ss_pred HHHHHhCcccHHHHHHHHHHHHHcC---CHHHHHHHHHHHHhhCCCCHHHHHHHHHH
Confidence 4566678888888888888888888 88888888888888888877776665443
No 25
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=96.63 E-value=0.03 Score=40.21 Aligned_cols=59 Identities=24% Similarity=0.251 Sum_probs=45.2
Q ss_pred ccchhcCCC---CHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhccCCCchHHHHhHHHHHHHHH
Q psy14212 2 EELFLHHPH---NHLLHQRYADILYTQGGLENIELAISHYLMAINLNEKNIRALYGLALSCHQVL 63 (111)
Q Consensus 2 EEvlL~~P~---n~~~h~rlAEi~Yt~Gg~enl~~A~kyf~~aleL~~~~lRalyGL~l~~~~l~ 63 (111)
++++-..|. ....+..+|.+++..| +++.|+++|.+++++.|++.++++.+-.+...+.
T Consensus 59 ~~al~~~~~~~~~~~~~~~la~~~~~~g---~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g 120 (172)
T PRK02603 59 EEALKLEEDPNDRSYILYNMGIIYASNG---EHDKALEYYHQALELNPKQPSALNNIAVIYHKRG 120 (172)
T ss_pred HHHHHHhhccchHHHHHHHHHHHHHHcC---CHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcC
Confidence 344544454 2468888999999988 8899999999999999999998887766555443
No 26
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional
Probab=96.62 E-value=0.018 Score=42.85 Aligned_cols=44 Identities=16% Similarity=0.169 Sum_probs=25.3
Q ss_pred HHHHHHHhcCCcccHHHHHHHHHHHhccCCCchHHHHhHHHHHHHHH
Q psy14212 17 RYADILYTQGGLENIELAISHYLMAINLNEKNIRALYGLALSCHQVL 63 (111)
Q Consensus 17 rlAEi~Yt~Gg~enl~~A~kyf~~aleL~~~~lRalyGL~l~~~~l~ 63 (111)
.||-.+|..| +++.|.+.|...+.++|.+.|.||||-+|+....
T Consensus 40 ~~A~~ly~~G---~l~~A~~~f~~L~~~Dp~~~~y~~gLG~~~Q~~g 83 (157)
T PRK15363 40 RYAMQLMEVK---EFAGAARLFQLLTIYDAWSFDYWFRLGECCQAQK 83 (157)
T ss_pred HHHHHHHHCC---CHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHh
Confidence 4455555555 5555666665555555666666666655555544
No 27
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=96.60 E-value=0.0048 Score=52.66 Aligned_cols=55 Identities=15% Similarity=0.195 Sum_probs=37.9
Q ss_pred ccchhcCCCCHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhccCCCchHHHHhHHHHH
Q psy14212 2 EELFLHHPHNHLLHQRYADILYTQGGLENIELAISHYLMAINLNEKNIRALYGLALSC 59 (111)
Q Consensus 2 EEvlL~~P~n~~~h~rlAEi~Yt~Gg~enl~~A~kyf~~aleL~~~~lRalyGL~l~~ 59 (111)
++++-.+|.++..+..+|.+++..| +++.|+++|-++++++|++..+++.+-.+.
T Consensus 389 ~~al~~~p~~~~~~~~lg~~~~~~g---~~~~A~~~~~kal~l~P~~~~~~~~la~~~ 443 (615)
T TIGR00990 389 DKALKLNSEDPDIYYHRAQLHFIKG---EFAQAGKDYQKSIDLDPDFIFSHIQLGVTQ 443 (615)
T ss_pred HHHHHhCCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHHcCccCHHHHHHHHHHH
Confidence 4556667777777777777777776 677777777777777777776666554443
No 28
>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]
Probab=96.51 E-value=0.0041 Score=50.32 Aligned_cols=56 Identities=29% Similarity=0.248 Sum_probs=48.8
Q ss_pred cchhcCCCCHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhccCCCchHHHHhHHHH
Q psy14212 3 ELFLHHPHNHLLHQRYADILYTQGGLENIELAISHYLMAINLNEKNIRALYGLALS 58 (111)
Q Consensus 3 EvlL~~P~n~~~h~rlAEi~Yt~Gg~enl~~A~kyf~~aleL~~~~lRalyGL~l~ 58 (111)
..+-+.|.|+-+..-|||++|-++|...-..++..|-+++.++|+|+|++|=|-+.
T Consensus 181 ~A~rL~g~n~~~~~g~aeaL~~~a~~~~ta~a~~ll~~al~~D~~~iral~lLA~~ 236 (287)
T COG4235 181 NALRLAGDNPEILLGLAEALYYQAGQQMTAKARALLRQALALDPANIRALSLLAFA 236 (287)
T ss_pred HHHHhCCCCHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhcCCccHHHHHHHHHH
Confidence 45667899999999999999999888888999999999999999999999855443
No 29
>smart00028 TPR Tetratricopeptide repeats. Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.
Probab=96.33 E-value=0.0081 Score=29.11 Aligned_cols=33 Identities=18% Similarity=0.247 Sum_probs=28.8
Q ss_pred HHHHHHHHHHHhcCCcccHHHHHHHHHHHhccCCCc
Q psy14212 13 LLHQRYADILYTQGGLENIELAISHYLMAINLNEKN 48 (111)
Q Consensus 13 ~~h~rlAEi~Yt~Gg~enl~~A~kyf~~aleL~~~~ 48 (111)
..+.++|.+++.+| +++.|..+|.++++++|++
T Consensus 2 ~~~~~~a~~~~~~~---~~~~a~~~~~~~~~~~~~~ 34 (34)
T smart00028 2 EALYNLGNAYLKLG---DYDEALEYYEKALELDPNN 34 (34)
T ss_pred hHHHHHHHHHHHHh---hHHHHHHHHHHHHccCCCC
Confidence 35678899999998 9999999999999998853
No 30
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional
Probab=96.29 E-value=0.013 Score=43.73 Aligned_cols=58 Identities=16% Similarity=0.015 Sum_probs=52.6
Q ss_pred chhcCCCCHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhccCCCchHHHHhHHHHHHHHHh
Q psy14212 4 LFLHHPHNHLLHQRYADILYTQGGLENIELAISHYLMAINLNEKNIRALYGLALSCHQVLT 64 (111)
Q Consensus 4 vlL~~P~n~~~h~rlAEi~Yt~Gg~enl~~A~kyf~~aleL~~~~lRalyGL~l~~~~l~~ 64 (111)
+...+|.|+.|+--||-++=.+| +++.|+.-|.+|+.|+|++.|+.+=+-.|--.+.+
T Consensus 61 L~~~Dp~~~~y~~gLG~~~Q~~g---~~~~AI~aY~~A~~L~~ddp~~~~~ag~c~L~lG~ 118 (157)
T PRK15363 61 LTIYDAWSFDYWFRLGECCQAQK---HWGEAIYAYGRAAQIKIDAPQAPWAAAECYLACDN 118 (157)
T ss_pred HHHhCcccHHHHHHHHHHHHHHh---hHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHcCC
Confidence 45789999999999999999999 99999999999999999999999988888765554
No 31
>PF13431 TPR_17: Tetratricopeptide repeat
Probab=96.27 E-value=0.0037 Score=34.76 Aligned_cols=32 Identities=25% Similarity=0.324 Sum_probs=26.8
Q ss_pred CccchhcCCCCHHHHHHHHHHHHhcCCcccHHHHH
Q psy14212 1 MEELFLHHPHNHLLHQRYADILYTQGGLENIELAI 35 (111)
Q Consensus 1 ~EEvlL~~P~n~~~h~rlAEi~Yt~Gg~enl~~A~ 35 (111)
|+.+|-++|+|+..+..||.+++-.| +++.|+
T Consensus 2 y~kAie~~P~n~~a~~nla~~~~~~g---~~~~A~ 33 (34)
T PF13431_consen 2 YKKAIELNPNNAEAYNNLANLYLNQG---DYEEAI 33 (34)
T ss_pred hHHHHHHCCCCHHHHHHHHHHHHHCc---CHHhhc
Confidence 35678889999999999999999888 777775
No 32
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=96.18 E-value=0.0086 Score=34.94 Aligned_cols=43 Identities=23% Similarity=0.278 Sum_probs=38.5
Q ss_pred ccchhcCCCCHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhccCCC
Q psy14212 2 EELFLHHPHNHLLHQRYADILYTQGGLENIELAISHYLMAINLNEK 47 (111)
Q Consensus 2 EEvlL~~P~n~~~h~rlAEi~Yt~Gg~enl~~A~kyf~~aleL~~~ 47 (111)
++++-..|.++..+..+|.++...| +.+.|+++|.++++++|+
T Consensus 58 ~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~a~~~~~~~~~~~~~ 100 (100)
T cd00189 58 EKALELDPDNAKAYYNLGLAYYKLG---KYEEALEAYEKALELDPN 100 (100)
T ss_pred HHHHhCCCcchhHHHHHHHHHHHHH---hHHHHHHHHHHHHccCCC
Confidence 4567788999999999999999998 899999999999999874
No 33
>PRK12370 invasion protein regulator; Provisional
Probab=96.17 E-value=0.011 Score=50.22 Aligned_cols=50 Identities=18% Similarity=0.192 Sum_probs=45.0
Q ss_pred CccchhcCCCCHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhccCCCchHHHH
Q psy14212 1 MEELFLHHPHNHLLHQRYADILYTQGGLENIELAISHYLMAINLNEKNIRALY 53 (111)
Q Consensus 1 ~EEvlL~~P~n~~~h~rlAEi~Yt~Gg~enl~~A~kyf~~aleL~~~~lRaly 53 (111)
+++++-++|+++..|..+|.++..+| +.+.|..+|.++++++|++..+.+
T Consensus 361 ~~~Al~l~P~~~~a~~~lg~~l~~~G---~~~eAi~~~~~Al~l~P~~~~~~~ 410 (553)
T PRK12370 361 FKQANLLSPISADIKYYYGWNLFMAG---QLEEALQTINECLKLDPTRAAAGI 410 (553)
T ss_pred HHHHHHhCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHhcCCCChhhHH
Confidence 46788899999999999999999999 899999999999999999876543
No 34
>PRK11189 lipoprotein NlpI; Provisional
Probab=96.09 E-value=0.015 Score=45.64 Aligned_cols=50 Identities=22% Similarity=0.221 Sum_probs=44.4
Q ss_pred ccchhcCCCCHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhccCCCch-HHHHh
Q psy14212 2 EELFLHHPHNHLLHQRYADILYTQGGLENIELAISHYLMAINLNEKNI-RALYG 54 (111)
Q Consensus 2 EEvlL~~P~n~~~h~rlAEi~Yt~Gg~enl~~A~kyf~~aleL~~~~l-RalyG 54 (111)
+.++-++|.+...+..+|.++|-.| +++.|.+.|.++++++|++. |++|.
T Consensus 122 ~~Al~l~P~~~~a~~~lg~~l~~~g---~~~eA~~~~~~al~~~P~~~~~~~~~ 172 (296)
T PRK11189 122 DSVLELDPTYNYAYLNRGIALYYGG---RYELAQDDLLAFYQDDPNDPYRALWL 172 (296)
T ss_pred HHHHHhCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHHhCCCCHHHHHHH
Confidence 4567899999999999999999998 99999999999999999875 65554
No 35
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=95.93 E-value=0.015 Score=42.96 Aligned_cols=58 Identities=24% Similarity=0.170 Sum_probs=47.8
Q ss_pred CccchhcCCCCH---HHHHHHHHHHHhcCCcccHHHHHHHHHHHhccCCCchH---HHHhHHHHHHH
Q psy14212 1 MEELFLHHPHNH---LLHQRYADILYTQGGLENIELAISHYLMAINLNEKNIR---ALYGLALSCHQ 61 (111)
Q Consensus 1 ~EEvlL~~P~n~---~~h~rlAEi~Yt~Gg~enl~~A~kyf~~aleL~~~~lR---alyGL~l~~~~ 61 (111)
+++++-.+|.++ ..+..+|.+++..| +++.|+..|.++++..|++.. ++|.+-.|-.+
T Consensus 56 ~~~~~~~~p~~~~~~~a~~~la~~~~~~~---~~~~A~~~~~~~l~~~p~~~~~~~a~~~~g~~~~~ 119 (235)
T TIGR03302 56 FEALESRYPFSPYAEQAQLDLAYAYYKSG---DYAEAIAAADRFIRLHPNHPDADYAYYLRGLSNYN 119 (235)
T ss_pred HHHHHHhCCCchhHHHHHHHHHHHHHhcC---CHHHHHHHHHHHHHHCcCCCchHHHHHHHHHHHHH
Confidence 467888899876 46688999999998 999999999999999997776 67776666544
No 36
>KOG1155|consensus
Probab=95.88 E-value=0.013 Score=50.68 Aligned_cols=54 Identities=22% Similarity=0.300 Sum_probs=40.2
Q ss_pred hhcCCCCHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhccCCCchHHHHhHHHHHHH
Q psy14212 5 FLHHPHNHLLHQRYADILYTQGGLENIELAISHYLMAINLNEKNIRALYGLALSCHQ 61 (111)
Q Consensus 5 lL~~P~n~~~h~rlAEi~Yt~Gg~enl~~A~kyf~~aleL~~~~lRalyGL~l~~~~ 61 (111)
|-+||.--..|.-+|-=+--+ .|...|+.-|-+||++||.+-||||||=++-.-
T Consensus 357 LkLNp~~~~aWTLmGHEyvEm---KNt~AAi~sYRrAvdi~p~DyRAWYGLGQaYei 410 (559)
T KOG1155|consen 357 LKLNPKYLSAWTLMGHEYVEM---KNTHAAIESYRRAVDINPRDYRAWYGLGQAYEI 410 (559)
T ss_pred HhcCcchhHHHHHhhHHHHHh---cccHHHHHHHHHHHhcCchhHHHHhhhhHHHHH
Confidence 445666555555554444333 388889999999999999999999999887653
No 37
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=95.84 E-value=0.017 Score=53.15 Aligned_cols=55 Identities=16% Similarity=0.147 Sum_probs=50.4
Q ss_pred CccchhcCCCCHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhccCCCchHHHHhHHHH
Q psy14212 1 MEELFLHHPHNHLLHQRYADILYTQGGLENIELAISHYLMAINLNEKNIRALYGLALS 58 (111)
Q Consensus 1 ~EEvlL~~P~n~~~h~rlAEi~Yt~Gg~enl~~A~kyf~~aleL~~~~lRalyGL~l~ 58 (111)
+++++-.+|.+...+..+|+++...| +++.|+++|.++++++|++.+++.|+..+
T Consensus 374 ~~~Al~~~P~~~~a~~~Lg~~~~~~g---~~~eA~~~y~~aL~~~p~~~~a~~~L~~l 428 (1157)
T PRK11447 374 YQQARQVDNTDSYAVLGLGDVAMARK---DYAAAERYYQQALRMDPGNTNAVRGLANL 428 (1157)
T ss_pred HHHHHHhCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Confidence 35778889999999999999999999 99999999999999999999999888765
No 38
>KOG1125|consensus
Probab=95.77 E-value=0.0075 Score=52.79 Aligned_cols=60 Identities=30% Similarity=0.397 Sum_probs=51.3
Q ss_pred ccchhcCCCCHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhccCCCchHHHHhHHHHHHHHHh
Q psy14212 2 EELFLHHPHNHLLHQRYADILYTQGGLENIELAISHYLMAINLNEKNIRALYGLALSCHQVLT 64 (111)
Q Consensus 2 EEvlL~~P~n~~~h~rlAEi~Yt~Gg~enl~~A~kyf~~aleL~~~~lRalyGL~l~~~~l~~ 64 (111)
|=+|...|+|..+--|||-++- ..+.-++|+.-|-||++|.|+++|+.|-|-.+|-.|..
T Consensus 454 ~~AL~v~Pnd~~lWNRLGAtLA---N~~~s~EAIsAY~rALqLqP~yVR~RyNlgIS~mNlG~ 513 (579)
T KOG1125|consen 454 EAALQVKPNDYLLWNRLGATLA---NGNRSEEAISAYNRALQLQPGYVRVRYNLGISCMNLGA 513 (579)
T ss_pred HHHHhcCCchHHHHHHhhHHhc---CCcccHHHHHHHHHHHhcCCCeeeeehhhhhhhhhhhh
Confidence 3467889999999999998763 23467999999999999999999999999999977664
No 39
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=95.72 E-value=0.026 Score=48.20 Aligned_cols=52 Identities=10% Similarity=0.068 Sum_probs=38.0
Q ss_pred ccchhcCCCCHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhccCCCchHHHHhHH
Q psy14212 2 EELFLHHPHNHLLHQRYADILYTQGGLENIELAISHYLMAINLNEKNIRALYGLA 56 (111)
Q Consensus 2 EEvlL~~P~n~~~h~rlAEi~Yt~Gg~enl~~A~kyf~~aleL~~~~lRalyGL~ 56 (111)
++++-++|.+...|..+|.+++-.| +++.|..+|.+++++.|++..+++.+-
T Consensus 423 ~kal~l~P~~~~~~~~la~~~~~~g---~~~eA~~~~~~al~~~P~~~~~~~~lg 474 (615)
T TIGR00990 423 QKSIDLDPDFIFSHIQLGVTQYKEG---SIASSMATFRRCKKNFPEAPDVYNYYG 474 (615)
T ss_pred HHHHHcCccCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHHhCCCChHHHHHHH
Confidence 4566777777777777788877777 777777777777777777766665543
No 40
>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins. Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.
Probab=95.62 E-value=0.0075 Score=46.16 Aligned_cols=58 Identities=17% Similarity=0.101 Sum_probs=43.2
Q ss_pred CccchhcCCCCHHHHHHHHHHHHhcCC--------cccHHHHHHHHHHHhccCCCchHHHHhHHHH
Q psy14212 1 MEELFLHHPHNHLLHQRYADILYTQGG--------LENIELAISHYLMAINLNEKNIRALYGLALS 58 (111)
Q Consensus 1 ~EEvlL~~P~n~~~h~rlAEi~Yt~Gg--------~enl~~A~kyf~~aleL~~~~lRalyGL~l~ 58 (111)
+||+|.++|..|--+--+|-.+++.|= .+.++.|..||.+|++.+|+|-=-.=.|-|+
T Consensus 58 ~eeAL~I~P~~hdAlw~lGnA~ts~A~l~~d~~~A~~~F~kA~~~FqkAv~~~P~ne~Y~ksLe~~ 123 (186)
T PF06552_consen 58 FEEALKINPNKHDALWCLGNAYTSLAFLTPDTAEAEEYFEKATEYFQKAVDEDPNNELYRKSLEMA 123 (186)
T ss_dssp HHHHHHH-TT-HHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHH-TT-HHHHHHHHHH
T ss_pred HHHHHhcCCchHHHHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHH
Confidence 589999999999999999999999871 2479999999999999999875333334444
No 41
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=95.60 E-value=0.053 Score=37.79 Aligned_cols=52 Identities=13% Similarity=0.034 Sum_probs=41.7
Q ss_pred CCCHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhccCCCchHHHHhHHHHHHHHH
Q psy14212 9 PHNHLLHQRYADILYTQGGLENIELAISHYLMAINLNEKNIRALYGLALSCHQVL 63 (111)
Q Consensus 9 P~n~~~h~rlAEi~Yt~Gg~enl~~A~kyf~~aleL~~~~lRalyGL~l~~~~l~ 63 (111)
|..+.....+|.+++..| +++.|.++|.++++.+|++..+++.+-.+.....
T Consensus 132 ~~~~~~~~~l~~~~~~~g---~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~ 183 (234)
T TIGR02521 132 PQPARSLENAGLCALKAG---DFDKAEKYLTRALQIDPQRPESLLELAELYYLRG 183 (234)
T ss_pred ccchHHHHHHHHHHHHcC---CHHHHHHHHHHHHHhCcCChHHHHHHHHHHHHcC
Confidence 556667777899999888 8899999999999999988888887766655433
No 42
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=95.53 E-value=0.42 Score=33.95 Aligned_cols=58 Identities=21% Similarity=0.179 Sum_probs=43.4
Q ss_pred cchhcCCC---CHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhccCCCchHHHHhHHHHHHHHH
Q psy14212 3 ELFLHHPH---NHLLHQRYADILYTQGGLENIELAISHYLMAINLNEKNIRALYGLALSCHQVL 63 (111)
Q Consensus 3 EvlL~~P~---n~~~h~rlAEi~Yt~Gg~enl~~A~kyf~~aleL~~~~lRalyGL~l~~~~l~ 63 (111)
+++-+.|. ....|..+|-++...| +.+.|+++|.+|+++.|++..++..+-.+-..+.
T Consensus 60 ~al~l~~~~~~~~~~~~~lg~~~~~~g---~~~eA~~~~~~Al~~~~~~~~~~~~la~i~~~~~ 120 (168)
T CHL00033 60 EAMRLEIDPYDRSYILYNIGLIHTSNG---EHTKALEYYFQALERNPFLPQALNNMAVICHYRG 120 (168)
T ss_pred HHHhccccchhhHHHHHHHHHHHHHcC---CHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHhh
Confidence 34444454 2347888999999999 8899999999999999998887766655554333
No 43
>KOG1126|consensus
Probab=95.49 E-value=0.017 Score=51.09 Aligned_cols=34 Identities=21% Similarity=0.404 Sum_probs=26.3
Q ss_pred cccHHHHHHHHHHHhccCCCchHHHHhHHHHHHH
Q psy14212 28 LENIELAISHYLMAINLNEKNIRALYGLALSCHQ 61 (111)
Q Consensus 28 ~enl~~A~kyf~~aleL~~~~lRalyGL~l~~~~ 61 (111)
.|.++.|.++|-.||..+|.+-||||||=|+-.+
T Consensus 468 ~ee~d~a~~~fr~Al~~~~rhYnAwYGlG~vy~K 501 (638)
T KOG1126|consen 468 TEEFDKAMKSFRKALGVDPRHYNAWYGLGTVYLK 501 (638)
T ss_pred hHHHHhHHHHHHhhhcCCchhhHHHHhhhhheec
Confidence 3466777777777777777899999999888654
No 44
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=95.27 E-value=0.069 Score=34.44 Aligned_cols=55 Identities=22% Similarity=0.295 Sum_probs=40.4
Q ss_pred ccchhcCCCC---HHHHHHHHHHHHhcCCcccHHHHHHHHHHHhccCCCc---hHHHHhHHHHH
Q psy14212 2 EELFLHHPHN---HLLHQRYADILYTQGGLENIELAISHYLMAINLNEKN---IRALYGLALSC 59 (111)
Q Consensus 2 EEvlL~~P~n---~~~h~rlAEi~Yt~Gg~enl~~A~kyf~~aleL~~~~---lRalyGL~l~~ 59 (111)
++++-..|.+ ...+..+|.+++..| ++..|.++|..++.+.|++ ..+++.+-.+-
T Consensus 26 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~---~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~~~ 86 (119)
T TIGR02795 26 QAFLKKYPKSTYAPNAHYWLGEAYYAQG---KYADAAKAFLAVVKKYPKSPKAPDALLKLGMSL 86 (119)
T ss_pred HHHHHHCCCccccHHHHHHHHHHHHhhc---cHHHHHHHHHHHHHHCCCCCcccHHHHHHHHHH
Confidence 3455566765 346777899999888 8999999999999998875 45555555443
No 45
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=95.09 E-value=0.054 Score=47.28 Aligned_cols=56 Identities=9% Similarity=-0.143 Sum_probs=49.2
Q ss_pred CccchhcCCCCHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhccCCCchHHHHhHHHHH
Q psy14212 1 MEELFLHHPHNHLLHQRYADILYTQGGLENIELAISHYLMAINLNEKNIRALYGLALSC 59 (111)
Q Consensus 1 ~EEvlL~~P~n~~~h~rlAEi~Yt~Gg~enl~~A~kyf~~aleL~~~~lRalyGL~l~~ 59 (111)
+++++-.+|.++-.|..+|.++...| +++.|+..|.++++++|++..+++.+-.+.
T Consensus 99 l~~~l~~~P~~~~a~~~la~~l~~~g---~~~~Ai~~l~~Al~l~P~~~~a~~~la~~l 154 (656)
T PRK15174 99 VNKLLAVNVCQPEDVLLVASVLLKSK---QYATVADLAEQAWLAFSGNSQIFALHLRTL 154 (656)
T ss_pred HHHHHHhCCCChHHHHHHHHHHHHcC---CHHHHHHHHHHHHHhCCCcHHHHHHHHHHH
Confidence 35678889999999999999999998 899999999999999999998888775553
No 46
>KOG0553|consensus
Probab=95.03 E-value=0.067 Score=43.73 Aligned_cols=58 Identities=21% Similarity=0.190 Sum_probs=45.3
Q ss_pred chhcCCCCHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhccCCCchHHHHhHHHHHHHHHh
Q psy14212 4 LFLHHPHNHLLHQRYADILYTQGGLENIELAISHYLMAINLNEKNIRALYGLALSCHQVLT 64 (111)
Q Consensus 4 vlL~~P~n~~~h~rlAEi~Yt~Gg~enl~~A~kyf~~aleL~~~~lRalyGL~l~~~~l~~ 64 (111)
.|-++|+-|-.+.|+|-.+|++| +++.|...|.++|+|.|+|-=..=+|..+-.++-.
T Consensus 141 Al~iDp~yskay~RLG~A~~~~g---k~~~A~~aykKaLeldP~Ne~~K~nL~~Ae~~l~e 198 (304)
T KOG0553|consen 141 ALSIDPHYSKAYGRLGLAYLALG---KYEEAIEAYKKALELDPDNESYKSNLKIAEQKLNE 198 (304)
T ss_pred HHhcChHHHHHHHHHHHHHHccC---cHHHHHHHHHhhhccCCCcHHHHHHHHHHHHHhcC
Confidence 46678888888888888888888 88888888999999999888555566666655554
No 47
>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins. Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.
Probab=94.70 E-value=0.41 Score=36.74 Aligned_cols=92 Identities=17% Similarity=0.219 Sum_probs=61.2
Q ss_pred ccchhcCCCCHHHHHHHHHHHHhcCCc-------ccHHHHHHHHHHHhccCCCchHHHHhHHHHHHHHHhhhhhhhhhHH
Q psy14212 2 EELFLHHPHNHLLHQRYADILYTQGGL-------ENIELAISHYLMAINLNEKNIRALYGLALSCHQVLTSAKCSAAKKK 74 (111)
Q Consensus 2 EEvlL~~P~n~~~h~rlAEi~Yt~Gg~-------enl~~A~kyf~~aleL~~~~lRalyGL~l~~~~l~~~~k~~~~~~~ 74 (111)
|+....+|+++-...|-|..+.-.+.. +-++.|+.=|..||.+||+.-+|+|=+=.+-..+... . ....
T Consensus 15 ea~y~~nP~DadnL~~WG~ALLELAqfk~g~es~~miedAisK~eeAL~I~P~~hdAlw~lGnA~ts~A~l---~-~d~~ 90 (186)
T PF06552_consen 15 EAAYAKNPLDADNLTNWGGALLELAQFKQGPESKKMIEDAISKFEEALKINPNKHDALWCLGNAYTSLAFL---T-PDTA 90 (186)
T ss_dssp HHHHHH-TT-HHHHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHHH-------HH
T ss_pred HHHHHhCcHhHHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHhh---c-CChH
Confidence 566788999999888999888877522 3588899999999999999999998665554433321 1 1122
Q ss_pred hHHHHHHHHHHHHHHHHHhhcCC
Q psy14212 75 EISKQMMWVSKHLARQYEEQQGN 97 (111)
Q Consensus 75 e~~kL~~~A~~~L~~~Y~~~~~~ 97 (111)
+...+-+.|++..++....+..+
T Consensus 91 ~A~~~F~kA~~~FqkAv~~~P~n 113 (186)
T PF06552_consen 91 EAEEYFEKATEYFQKAVDEDPNN 113 (186)
T ss_dssp HHHHHHHHHHHHHHHHHHH-TT-
T ss_pred HHHHHHHHHHHHHHHHHhcCCCc
Confidence 34567788888888887764444
No 48
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=94.70 E-value=0.078 Score=44.33 Aligned_cols=54 Identities=28% Similarity=0.264 Sum_probs=38.1
Q ss_pred ccchhcCCCCHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhccCCCchHHHHhHHHH
Q psy14212 2 EELFLHHPHNHLLHQRYADILYTQGGLENIELAISHYLMAINLNEKNIRALYGLALS 58 (111)
Q Consensus 2 EEvlL~~P~n~~~h~rlAEi~Yt~Gg~enl~~A~kyf~~aleL~~~~lRalyGL~l~ 58 (111)
++++-..|.++..+.++|.+++..| +.+.|.++|.++++.+|++..+++++..+
T Consensus 625 ~~~~~~~~~~~~~~~~l~~~~~~~~---~~~~A~~~~~~~~~~~~~~~~~~~~l~~~ 678 (899)
T TIGR02917 625 KKLLALQPDSALALLLLADAYAVMK---NYAKAITSLKRALELKPDNTEAQIGLAQL 678 (899)
T ss_pred HHHHHhCCCChHHHHHHHHHHHHcC---CHHHHHHHHHHHHhcCCCCHHHHHHHHHH
Confidence 3445566777777777777777777 77777777777777777777666665544
No 49
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=94.62 E-value=0.027 Score=35.81 Aligned_cols=58 Identities=26% Similarity=0.248 Sum_probs=44.0
Q ss_pred ccchhcCCC--CHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhccCCCchHHHHhHHHHHHHHH
Q psy14212 2 EELFLHHPH--NHLLHQRYADILYTQGGLENIELAISHYLMAINLNEKNIRALYGLALSCHQVL 63 (111)
Q Consensus 2 EEvlL~~P~--n~~~h~rlAEi~Yt~Gg~enl~~A~kyf~~aleL~~~~lRalyGL~l~~~~l~ 63 (111)
|.++-..|. +..+...+|.++|.+| +++.|...+-+ .+.+|.+.+..|-+-.|.-++.
T Consensus 13 ~k~~~~~~~~~~~~~~~~la~~~~~~~---~y~~A~~~~~~-~~~~~~~~~~~~l~a~~~~~l~ 72 (84)
T PF12895_consen 13 EKLLELDPTNPNSAYLYNLAQCYFQQG---KYEEAIELLQK-LKLDPSNPDIHYLLARCLLKLG 72 (84)
T ss_dssp HHHHHHHCGTHHHHHHHHHHHHHHHTT---HHHHHHHHHHC-HTHHHCHHHHHHHHHHHHHHTT
T ss_pred HHHHHHCCCChhHHHHHHHHHHHHHCC---CHHHHHHHHHH-hCCCCCCHHHHHHHHHHHHHhC
Confidence 455666774 4556666899999999 99999999999 8899988888886655554433
No 50
>KOG1127|consensus
Probab=94.53 E-value=0.064 Score=50.13 Aligned_cols=56 Identities=25% Similarity=0.367 Sum_probs=50.5
Q ss_pred chhcCCCCHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhccCCCchHHHHhHHHHHHH
Q psy14212 4 LFLHHPHNHLLHQRYADILYTQGGLENIELAISHYLMAINLNEKNIRALYGLALSCHQ 61 (111)
Q Consensus 4 vlL~~P~n~~~h~rlAEi~Yt~Gg~enl~~A~kyf~~aleL~~~~lRalyGL~l~~~~ 61 (111)
||-.+|+|++.|.-+|--+...|+ +++.|..+|-.|.++.|+|+=||=||..--.+
T Consensus 28 vLk~dpdNYnA~vFLGvAl~sl~q--~le~A~ehYv~AaKldpdnlLAWkGL~nLye~ 83 (1238)
T KOG1127|consen 28 VLKEDPDNYNAQVFLGVALWSLGQ--DLEKAAEHYVLAAKLDPDNLLAWKGLGNLYER 83 (1238)
T ss_pred HHhcCCCcchhhhHHHHHHHhccC--CHHHHHHHHHHHHhcChhhhHHHHHHHHHHHc
Confidence 677899999999999999999986 59999999999999999999999998865544
No 51
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=94.40 E-value=0.099 Score=48.26 Aligned_cols=55 Identities=16% Similarity=0.115 Sum_probs=49.0
Q ss_pred CccchhcCCCCHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhccCCCchHHHHhHHHH
Q psy14212 1 MEELFLHHPHNHLLHQRYADILYTQGGLENIELAISHYLMAINLNEKNIRALYGLALS 58 (111)
Q Consensus 1 ~EEvlL~~P~n~~~h~rlAEi~Yt~Gg~enl~~A~kyf~~aleL~~~~lRalyGL~l~ 58 (111)
+++++-.+|.++..+..+|.+++-.| +++.|++.|.+++++.|++..++|.+-+.
T Consensus 484 ~~~Al~~~P~~~~~~~~LA~~~~~~G---~~~~A~~~l~~al~~~P~~~~~~~a~al~ 538 (1157)
T PRK11447 484 QRQRLALDPGSVWLTYRLAQDLRQAG---QRSQADALMRRLAQQKPNDPEQVYAYGLY 538 (1157)
T ss_pred HHHHHHhCCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHHcCCCCHHHHHHHHHH
Confidence 46788899999999999999999999 99999999999999999998888766543
No 52
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=94.40 E-value=0.11 Score=46.08 Aligned_cols=58 Identities=26% Similarity=0.219 Sum_probs=50.4
Q ss_pred CccchhcCCCCHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhccCCCchHHHHhHHHHHHH
Q psy14212 1 MEELFLHHPHNHLLHQRYADILYTQGGLENIELAISHYLMAINLNEKNIRALYGLALSCHQ 61 (111)
Q Consensus 1 ~EEvlL~~P~n~~~h~rlAEi~Yt~Gg~enl~~A~kyf~~aleL~~~~lRalyGL~l~~~~ 61 (111)
+++++-..|.|.-.+..+|.++...| +.+.|.+.|.+++++.|++...+++.-++.-.
T Consensus 382 l~~al~~~P~n~~l~~~lA~l~~~~g---~~~~A~~~l~~al~l~Pd~~~l~~~~a~~al~ 439 (765)
T PRK10049 382 ARELAYNAPGNQGLRIDYASVLQARG---WPRAAENELKKAEVLEPRNINLEVEQAWTALD 439 (765)
T ss_pred HHHHHHhCCCCHHHHHHHHHHHHhcC---CHHHHHHHHHHHHhhCCCChHHHHHHHHHHHH
Confidence 35777889999999999999999888 88999999999999999999999888886543
No 53
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=94.19 E-value=0.12 Score=43.29 Aligned_cols=55 Identities=35% Similarity=0.393 Sum_probs=42.9
Q ss_pred ccchhcCCCCHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhccCCCchHHHHhHHHHH
Q psy14212 2 EELFLHHPHNHLLHQRYADILYTQGGLENIELAISHYLMAINLNEKNIRALYGLALSC 59 (111)
Q Consensus 2 EEvlL~~P~n~~~h~rlAEi~Yt~Gg~enl~~A~kyf~~aleL~~~~lRalyGL~l~~ 59 (111)
++++-.+|.+...+..+|.+++..| +++.|.+.|.++++++|++.++++.+..+.
T Consensus 183 ~~~~~~~~~~~~~~~~~~~~~~~~g---~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~ 237 (899)
T TIGR02917 183 DEVLTADPGNVDALLLKGDLLLSLG---NIELALAAYRKAIALRPNNPAVLLALATIL 237 (899)
T ss_pred HHHHHhCCCChHHHHHHHHHHHhcC---CHHHHHHHHHHHHhhCCCCHHHHHHHHHHH
Confidence 4556667888878888888888877 788888888888888888888777765554
No 54
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=94.04 E-value=0.16 Score=38.76 Aligned_cols=46 Identities=24% Similarity=0.311 Sum_probs=37.6
Q ss_pred CCCHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhccCCCchHHHHhHHH
Q psy14212 9 PHNHLLHQRYADILYTQGGLENIELAISHYLMAINLNEKNIRALYGLAL 57 (111)
Q Consensus 9 P~n~~~h~rlAEi~Yt~Gg~enl~~A~kyf~~aleL~~~~lRalyGL~l 57 (111)
|.++.+...+|+++.-.| +...|++.|-++|+++|++..++.++.-
T Consensus 143 ~~~~~~~~~~a~~~~~~G---~~~~A~~~~~~al~~~P~~~~~~~~l~~ 188 (280)
T PF13429_consen 143 PDSARFWLALAEIYEQLG---DPDKALRDYRKALELDPDDPDARNALAW 188 (280)
T ss_dssp -T-HHHHHHHHHHHHHCC---HHHHHHHHHHHHHHH-TT-HHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHHcCCCCHHHHHHHHH
Confidence 688999999999999999 8999999999999999998877766543
No 55
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=93.94 E-value=0.12 Score=47.77 Aligned_cols=57 Identities=14% Similarity=0.084 Sum_probs=40.1
Q ss_pred ccchhcCCCCHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhccCCCchHHHHhHHHHHHH
Q psy14212 2 EELFLHHPHNHLLHQRYADILYTQGGLENIELAISHYLMAINLNEKNIRALYGLALSCHQ 61 (111)
Q Consensus 2 EEvlL~~P~n~~~h~rlAEi~Yt~Gg~enl~~A~kyf~~aleL~~~~lRalyGL~l~~~~ 61 (111)
++++-++|.++.+|..+|-++.-.| +++.|+.+|.++++++|++.-++|.+-++-..
T Consensus 633 ~~AL~l~Pd~~~a~~nLG~aL~~~G---~~eeAi~~l~~AL~l~P~~~~a~~nLA~al~~ 689 (987)
T PRK09782 633 RAALELEPNNSNYQAALGYALWDSG---DIAQSREMLERAHKGLPDDPALIRQLAYVNQR 689 (987)
T ss_pred HHHHHhCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Confidence 4556667777777777777777666 67777777777777777777777766666544
No 56
>KOG1173|consensus
Probab=93.90 E-value=0.15 Score=45.06 Aligned_cols=53 Identities=30% Similarity=0.412 Sum_probs=47.4
Q ss_pred chhcCCCCHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhccCCCc--hHHHHhHHHHH
Q psy14212 4 LFLHHPHNHLLHQRYADILYTQGGLENIELAISHYLMAINLNEKN--IRALYGLALSC 59 (111)
Q Consensus 4 vlL~~P~n~~~h~rlAEi~Yt~Gg~enl~~A~kyf~~aleL~~~~--lRalyGL~l~~ 59 (111)
+|+..|++|.+|.-+|=|+--.| |+..|.-||-.|+-+.|+| .+.+-|..+=.
T Consensus 481 aL~l~~k~~~~~asig~iy~llg---nld~Aid~fhKaL~l~p~n~~~~~lL~~aie~ 535 (611)
T KOG1173|consen 481 ALLLSPKDASTHASIGYIYHLLG---NLDKAIDHFHKALALKPDNIFISELLKLAIED 535 (611)
T ss_pred HHHcCCCchhHHHHHHHHHHHhc---ChHHHHHHHHHHHhcCCccHHHHHHHHHHHHh
Confidence 68899999999999999999999 9999999999999999988 57777755444
No 57
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=93.86 E-value=0.16 Score=44.34 Aligned_cols=52 Identities=17% Similarity=0.188 Sum_probs=23.8
Q ss_pred chhcCCCCHHHHHHHHHHHHhcCCcc-cHHHHHHHHHHHhccCCCchHHHHhH
Q psy14212 4 LFLHHPHNHLLHQRYADILYTQGGLE-NIELAISHYLMAINLNEKNIRALYGL 55 (111)
Q Consensus 4 vlL~~P~n~~~h~rlAEi~Yt~Gg~e-nl~~A~kyf~~aleL~~~~lRalyGL 55 (111)
++-..|.+...+..+|.+++..|-.+ ....|..+|.++++++|++.++++.+
T Consensus 238 al~~~p~~~~~~~~Lg~~l~~~G~~~eA~~~A~~~~~~Al~l~P~~~~a~~~l 290 (656)
T PRK15174 238 ALARGLDGAALRRSLGLAYYQSGRSREAKLQAAEHWRHALQFNSDNVRIVTLY 290 (656)
T ss_pred HHhcCCCCHHHHHHHHHHHHHcCCchhhHHHHHHHHHHHHhhCCCCHHHHHHH
Confidence 33444555555555555555555111 01124555555555555554444443
No 58
>PRK10866 outer membrane biogenesis protein BamD; Provisional
Probab=93.84 E-value=0.39 Score=37.17 Aligned_cols=53 Identities=21% Similarity=0.145 Sum_probs=43.2
Q ss_pred CccchhcCCCCHHHH---HHHHHHHHhcCCcccHHHHHHHHHHHhccCCCchHHHHhHH
Q psy14212 1 MEELFLHHPHNHLLH---QRYADILYTQGGLENIELAISHYLMAINLNEKNIRALYGLA 56 (111)
Q Consensus 1 ~EEvlL~~P~n~~~h---~rlAEi~Yt~Gg~enl~~A~kyf~~aleL~~~~lRalyGL~ 56 (111)
+|+++-..|.++... ..+|.++|-.| ++..|+.+|.+.|++.|++..+=|-++
T Consensus 55 f~~l~~~yP~s~~a~~a~l~la~ayy~~~---~y~~A~~~~e~fi~~~P~~~~~~~a~Y 110 (243)
T PRK10866 55 LEALDNRYPFGPYSQQVQLDLIYAYYKNA---DLPLAQAAIDRFIRLNPTHPNIDYVLY 110 (243)
T ss_pred HHHHHHhCCCChHHHHHHHHHHHHHHhcC---CHHHHHHHHHHHHHhCcCCCchHHHHH
Confidence 467788889888777 78899999888 999999999999999997654443333
No 59
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=93.84 E-value=0.14 Score=41.74 Aligned_cols=53 Identities=19% Similarity=0.214 Sum_probs=44.9
Q ss_pred ccchhcCCCCHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhccCCCchH-HHHhHHH
Q psy14212 2 EELFLHHPHNHLLHQRYADILYTQGGLENIELAISHYLMAINLNEKNIR-ALYGLAL 57 (111)
Q Consensus 2 EEvlL~~P~n~~~h~rlAEi~Yt~Gg~enl~~A~kyf~~aleL~~~~lR-alyGL~l 57 (111)
|..+-..|+|+.++.-+|.+++-.| ++..|++||.+++++.|++.- .+++..+
T Consensus 318 e~~lk~~P~~~~l~l~lgrl~~~~~---~~~~A~~~le~al~~~P~~~~~~~La~~~ 371 (398)
T PRK10747 318 RQQIKQHGDTPLLWSTLGQLLMKHG---EWQEASLAFRAALKQRPDAYDYAWLADAL 371 (398)
T ss_pred HHHHhhCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHhcCCCHHHHHHHHHHH
Confidence 4566778999999999999999998 899999999999999998765 4444443
No 60
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=93.81 E-value=0.1 Score=28.73 Aligned_cols=29 Identities=31% Similarity=0.360 Sum_probs=24.2
Q ss_pred HHHHHHHHHhcCCcccHHHHHHHHHHHhccCC
Q psy14212 15 HQRYADILYTQGGLENIELAISHYLMAINLNE 46 (111)
Q Consensus 15 h~rlAEi~Yt~Gg~enl~~A~kyf~~aleL~~ 46 (111)
+..+|.++..+| +++.|+.+|-+++++..
T Consensus 2 l~~Lg~~~~~~g---~~~~Ai~~y~~aL~l~~ 30 (36)
T PF13176_consen 2 LNNLGRIYRQQG---DYEKAIEYYEQALALAR 30 (36)
T ss_dssp HHHHHHHHHHCT----HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcC---CHHHHHHHHHHHHHhcc
Confidence 467999999999 99999999999776654
No 61
>KOG0553|consensus
Probab=93.77 E-value=0.07 Score=43.63 Aligned_cols=56 Identities=20% Similarity=0.166 Sum_probs=49.2
Q ss_pred CccchhcCCCCHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhccCCCchHHHHhHHHHH
Q psy14212 1 MEELFLHHPHNHLLHQRYADILYTQGGLENIELAISHYLMAINLNEKNIRALYGLALSC 59 (111)
Q Consensus 1 ~EEvlL~~P~n~~~h~rlAEi~Yt~Gg~enl~~A~kyf~~aleL~~~~lRalyGL~l~~ 59 (111)
|.++|.++|.|..||.-=|-+|-..| .++.|+|=-..||.++|.+.|||==|=++-
T Consensus 104 Y~~AI~l~P~nAVyycNRAAAy~~Lg---~~~~AVkDce~Al~iDp~yskay~RLG~A~ 159 (304)
T KOG0553|consen 104 YTEAIELDPTNAVYYCNRAAAYSKLG---EYEDAVKDCESALSIDPHYSKAYGRLGLAY 159 (304)
T ss_pred HHHHHhcCCCcchHHHHHHHHHHHhc---chHHHHHHHHHHHhcChHHHHHHHHHHHHH
Confidence 46889999999999999999999999 899999999999999999999986444443
No 62
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=93.62 E-value=0.17 Score=30.79 Aligned_cols=42 Identities=19% Similarity=0.110 Sum_probs=34.0
Q ss_pred HHHHHhcCCcccHHHHHHHHHHHhccCCCchHHHHhHHHHHHHHH
Q psy14212 19 ADILYTQGGLENIELAISHYLMAINLNEKNIRALYGLALSCHQVL 63 (111)
Q Consensus 19 AEi~Yt~Gg~enl~~A~kyf~~aleL~~~~lRalyGL~l~~~~l~ 63 (111)
++++...+ +++.|++++.++++++|++.++++..-.|-.+..
T Consensus 2 ~~~~~~~~---~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~g 43 (73)
T PF13371_consen 2 KQIYLQQE---DYEEALEVLERALELDPDDPELWLQRARCLFQLG 43 (73)
T ss_pred HHHHHhCC---CHHHHHHHHHHHHHhCcccchhhHHHHHHHHHhc
Confidence 56677666 9999999999999999999999877666655333
No 63
>KOG2076|consensus
Probab=93.59 E-value=0.88 Score=41.99 Aligned_cols=31 Identities=29% Similarity=0.255 Sum_probs=25.1
Q ss_pred cHHHHHHHHHHHhccCCCchHHHHhHHHHHH
Q psy14212 30 NIELAISHYLMAINLNEKNIRALYGLALSCH 60 (111)
Q Consensus 30 nl~~A~kyf~~aleL~~~~lRalyGL~l~~~ 60 (111)
|+..|+-+|.+||.++|.|.+-.|-=..-+.
T Consensus 222 ~i~qA~~cy~rAI~~~p~n~~~~~ers~L~~ 252 (895)
T KOG2076|consen 222 NINQARYCYSRAIQANPSNWELIYERSSLYQ 252 (895)
T ss_pred cHHHHHHHHHHHHhcCCcchHHHHHHHHHHH
Confidence 8999999999999999988776665444444
No 64
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=93.53 E-value=0.21 Score=29.89 Aligned_cols=34 Identities=24% Similarity=0.050 Sum_probs=30.9
Q ss_pred cHHHHHHHHHHHhccCCCchHHHHhHHHHHHHHH
Q psy14212 30 NIELAISHYLMAINLNEKNIRALYGLALSCHQVL 63 (111)
Q Consensus 30 nl~~A~kyf~~aleL~~~~lRalyGL~l~~~~l~ 63 (111)
++..|.++|.++++.+|+|..+++++..|.-+..
T Consensus 6 ~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g 39 (68)
T PF14559_consen 6 DYDEAIELLEKALQRNPDNPEARLLLAQCYLKQG 39 (68)
T ss_dssp HHHHHHHHHHHHHHHTTTSHHHHHHHHHHHHHTT
T ss_pred CHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcC
Confidence 8999999999999999999999999988876544
No 65
>KOG4626|consensus
Probab=93.43 E-value=0.16 Score=45.90 Aligned_cols=53 Identities=30% Similarity=0.356 Sum_probs=45.8
Q ss_pred ccchhcCCCCHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhccCCCchHHHHhHHH
Q psy14212 2 EELFLHHPHNHLLHQRYADILYTQGGLENIELAISHYLMAINLNEKNIRALYGLAL 57 (111)
Q Consensus 2 EEvlL~~P~n~~~h~rlAEi~Yt~Gg~enl~~A~kyf~~aleL~~~~lRalyGL~l 57 (111)
+-.+...|++...|--+|-|||-+| .+++|+..|-|+|++.|+..-|+--|--
T Consensus 276 ~rAl~lrpn~A~a~gNla~iYyeqG---~ldlAI~~Ykral~~~P~F~~Ay~Nlan 328 (966)
T KOG4626|consen 276 LRALNLRPNHAVAHGNLACIYYEQG---LLDLAIDTYKRALELQPNFPDAYNNLAN 328 (966)
T ss_pred HHHHhcCCcchhhccceEEEEeccc---cHHHHHHHHHHHHhcCCCchHHHhHHHH
Confidence 4567889999999999999999999 8999999999999999987777655543
No 66
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=93.31 E-value=0.65 Score=36.64 Aligned_cols=54 Identities=11% Similarity=0.194 Sum_probs=42.9
Q ss_pred ccchhcCCCC---HHHHHHHHHHHHhcCCcccHHHHHHHHHHHhccCCCc---hHHHHhHHHH
Q psy14212 2 EELFLHHPHN---HLLHQRYADILYTQGGLENIELAISHYLMAINLNEKN---IRALYGLALS 58 (111)
Q Consensus 2 EEvlL~~P~n---~~~h~rlAEi~Yt~Gg~enl~~A~kyf~~aleL~~~~---lRalyGL~l~ 58 (111)
+.++-..|.+ ++.|-.+|+++|..| ++..|+.+|..+++.-|++ .-|+|-+-.+
T Consensus 167 ~~fl~~yP~s~~a~~A~y~LG~~y~~~g---~~~~A~~~f~~vv~~yP~s~~~~dAl~klg~~ 226 (263)
T PRK10803 167 QNFVKKYPDSTYQPNANYWLGQLNYNKG---KKDDAAYYFASVVKNYPKSPKAADAMFKVGVI 226 (263)
T ss_pred HHHHHHCcCCcchHHHHHHHHHHHHHcC---CHHHHHHHHHHHHHHCCCCcchhHHHHHHHHH
Confidence 4556677887 579999999999999 9999999999999998864 4555544333
No 67
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=93.26 E-value=0.16 Score=32.63 Aligned_cols=47 Identities=15% Similarity=0.010 Sum_probs=38.9
Q ss_pred ccchhcCCCC---HHHHHHHHHHHHhcCCcccHHHHHHHHHHHhccCCCchHH
Q psy14212 2 EELFLHHPHN---HLLHQRYADILYTQGGLENIELAISHYLMAINLNEKNIRA 51 (111)
Q Consensus 2 EEvlL~~P~n---~~~h~rlAEi~Yt~Gg~enl~~A~kyf~~aleL~~~~lRa 51 (111)
++++-..|.+ +..+..+|.+++-.| +...|.++|.++++..|++..+
T Consensus 63 ~~~~~~~p~~~~~~~~~~~~~~~~~~~~---~~~~A~~~~~~~~~~~p~~~~~ 112 (119)
T TIGR02795 63 LAVVKKYPKSPKAPDALLKLGMSLQELG---DKEKAKATLQQVIKRYPGSSAA 112 (119)
T ss_pred HHHHHHCCCCCcccHHHHHHHHHHHHhC---ChHHHHHHHHHHHHHCcCChhH
Confidence 4566667775 567899999999888 8999999999999999987653
No 68
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=92.95 E-value=0.26 Score=38.20 Aligned_cols=42 Identities=14% Similarity=0.112 Sum_probs=32.4
Q ss_pred ccchhcCCCCHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhccCC
Q psy14212 2 EELFLHHPHNHLLHQRYADILYTQGGLENIELAISHYLMAINLNE 46 (111)
Q Consensus 2 EEvlL~~P~n~~~h~rlAEi~Yt~Gg~enl~~A~kyf~~aleL~~ 46 (111)
++++-.+|.+...|..+|.++|-.| +++.|+.+|.+++++.|
T Consensus 138 ~~al~~~p~~~~~~~~la~i~~~~g---~~~eA~~~l~~~l~~~~ 179 (355)
T cd05804 138 RRALELNPDDAWAVHAVAHVLEMQG---RFKEGIAFMESWRDTWD 179 (355)
T ss_pred HHHHhhCCCCcHHHHHHHHHHHHcC---CHHHHHHHHHhhhhccC
Confidence 4566677888777777888888777 77888888888888776
No 69
>PF13431 TPR_17: Tetratricopeptide repeat
Probab=92.93 E-value=0.08 Score=29.24 Aligned_cols=23 Identities=39% Similarity=0.340 Sum_probs=19.7
Q ss_pred HHHHhccCCCchHHHHhHHHHHH
Q psy14212 38 YLMAINLNEKNIRALYGLALSCH 60 (111)
Q Consensus 38 f~~aleL~~~~lRalyGL~l~~~ 60 (111)
|.+||+++|+|..+++-|-.+-.
T Consensus 2 y~kAie~~P~n~~a~~nla~~~~ 24 (34)
T PF13431_consen 2 YKKAIELNPNNAEAYNNLANLYL 24 (34)
T ss_pred hHHHHHHCCCCHHHHHHHHHHHH
Confidence 78999999999999998776544
No 70
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional
Probab=92.77 E-value=0.4 Score=41.16 Aligned_cols=53 Identities=17% Similarity=0.166 Sum_probs=44.9
Q ss_pred cCCCCHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhccCCCchH---HHHhHHHHHHHH
Q psy14212 7 HHPHNHLLHQRYADILYTQGGLENIELAISHYLMAINLNEKNIR---ALYGLALSCHQV 62 (111)
Q Consensus 7 ~~P~n~~~h~rlAEi~Yt~Gg~enl~~A~kyf~~aleL~~~~lR---alyGL~l~~~~l 62 (111)
.+|.+.-.|.-+|-+++..| +++.|...|.+||+++|++.= ++|-+-.|-.++
T Consensus 70 ~dP~~a~a~~NLG~AL~~lG---ryeEAIa~f~rALeL~Pd~aeA~~A~yNLAcaya~L 125 (453)
T PLN03098 70 ADVKTAEDAVNLGLSLFSKG---RVKDALAQFETALELNPNPDEAQAAYYNKACCHAYR 125 (453)
T ss_pred CCCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHc
Confidence 58999999999999999999 999999999999999999873 366665555443
No 71
>KOG1173|consensus
Probab=92.76 E-value=0.13 Score=45.44 Aligned_cols=49 Identities=16% Similarity=0.024 Sum_probs=38.8
Q ss_pred CCCCHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhccCCCchHHHHhHHHHH
Q psy14212 8 HPHNHLLHQRYADILYTQGGLENIELAISHYLMAINLNEKNIRALYGLALSC 59 (111)
Q Consensus 8 ~P~n~~~h~rlAEi~Yt~Gg~enl~~A~kyf~~aleL~~~~lRalyGL~l~~ 59 (111)
-|+.++-.--.|=-+|++| +.+.||+||+.|.-++|.+-+||-|+-.+-
T Consensus 308 yP~~a~sW~aVg~YYl~i~---k~seARry~SKat~lD~~fgpaWl~fghsf 356 (611)
T KOG1173|consen 308 YPSKALSWFAVGCYYLMIG---KYSEARRYFSKATTLDPTFGPAWLAFGHSF 356 (611)
T ss_pred CCCCCcchhhHHHHHHHhc---CcHHHHHHHHHHhhcCccccHHHHHHhHHh
Confidence 4555555555666666666 899999999999999999999999886543
No 72
>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A.
Probab=92.55 E-value=0.26 Score=25.41 Aligned_cols=30 Identities=23% Similarity=0.253 Sum_probs=26.6
Q ss_pred HHHHHHHHHhcCCcccHHHHHHHHHHHhccCCC
Q psy14212 15 HQRYADILYTQGGLENIELAISHYLMAINLNEK 47 (111)
Q Consensus 15 h~rlAEi~Yt~Gg~enl~~A~kyf~~aleL~~~ 47 (111)
..++|.+++-.| +.+.|+++|.+.++..|+
T Consensus 3 ~~~~a~~~~~~g---~~~~A~~~~~~~~~~~P~ 32 (33)
T PF13174_consen 3 LYRLARCYYKLG---DYDEAIEYFQRLIKRYPD 32 (33)
T ss_dssp HHHHHHHHHHHC---HHHHHHHHHHHHHHHSTT
T ss_pred HHHHHHHHHHcc---CHHHHHHHHHHHHHHCcC
Confidence 357899999988 999999999999998886
No 73
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=91.79 E-value=0.28 Score=40.04 Aligned_cols=46 Identities=11% Similarity=0.082 Sum_probs=40.5
Q ss_pred ccchhcCCCCH--HHHHHHHHHHHhcCCcccHHHHHHHHH--HHhccCCCchH
Q psy14212 2 EELFLHHPHNH--LLHQRYADILYTQGGLENIELAISHYL--MAINLNEKNIR 50 (111)
Q Consensus 2 EEvlL~~P~n~--~~h~rlAEi~Yt~Gg~enl~~A~kyf~--~aleL~~~~lR 50 (111)
|..+-..|.|+ .++.-||-++|-.| ++..|++||. ++++..|++.-
T Consensus 323 e~~lk~~p~~~~~~ll~sLg~l~~~~~---~~~~A~~~le~a~a~~~~p~~~~ 372 (409)
T TIGR00540 323 EKQAKNVDDKPKCCINRALGQLLMKHG---EFIEAADAFKNVAACKEQLDAND 372 (409)
T ss_pred HHHHHhCCCChhHHHHHHHHHHHHHcc---cHHHHHHHHHHhHHhhcCCCHHH
Confidence 44567889999 99999999999998 9999999999 79999998765
No 74
>KOG1174|consensus
Probab=91.71 E-value=0.36 Score=41.84 Aligned_cols=53 Identities=28% Similarity=0.310 Sum_probs=44.9
Q ss_pred hcCCCCHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhccCCCchHHHHhHHHHHHH
Q psy14212 6 LHHPHNHLLHQRYADILYTQGGLENIELAISHYLMAINLNEKNIRALYGLALSCHQ 61 (111)
Q Consensus 6 L~~P~n~~~h~rlAEi~Yt~Gg~enl~~A~kyf~~aleL~~~~lRalyGL~l~~~~ 61 (111)
|.+-.+-+.|..+|++.-... -+..|..||..|+.++|++-|++=|+-.--++
T Consensus 465 L~~~~D~~LH~~Lgd~~~A~N---e~Q~am~~y~~ALr~dP~~~~sl~Gl~~lEK~ 517 (564)
T KOG1174|consen 465 LIIFPDVNLHNHLGDIMRAQN---EPQKAMEYYYKALRQDPKSKRTLRGLRLLEKS 517 (564)
T ss_pred HhhccccHHHHHHHHHHHHhh---hHHHHHHHHHHHHhcCccchHHHHHHHHHHhc
Confidence 344457789999999998776 78899999999999999999999999766543
No 75
>PLN02789 farnesyltranstransferase
Probab=91.35 E-value=0.47 Score=38.39 Aligned_cols=57 Identities=12% Similarity=0.011 Sum_probs=43.5
Q ss_pred cchhcCCCCHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhccCCCchHHHHhHHHHHHHH
Q psy14212 3 ELFLHHPHNHLLHQRYADILYTQGGLENIELAISHYLMAINLNEKNIRALYGLALSCHQV 62 (111)
Q Consensus 3 EvlL~~P~n~~~h~rlAEi~Yt~Gg~enl~~A~kyf~~aleL~~~~lRalyGL~l~~~~l 62 (111)
.+|-.+|.|+..+.--+-++...| +++.|+.+|.++|+.+|+|-.||+-...+..++
T Consensus 133 kal~~dpkNy~AW~~R~w~l~~l~---~~~eeL~~~~~~I~~d~~N~sAW~~R~~vl~~~ 189 (320)
T PLN02789 133 KILSLDAKNYHAWSHRQWVLRTLG---GWEDELEYCHQLLEEDVRNNSAWNQRYFVITRS 189 (320)
T ss_pred HHHHhCcccHHHHHHHHHHHHHhh---hHHHHHHHHHHHHHHCCCchhHHHHHHHHHHhc
Confidence 566677777777777777777777 688899999999999998888887776665443
No 76
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=91.16 E-value=2.2 Score=33.39 Aligned_cols=41 Identities=17% Similarity=0.144 Sum_probs=28.7
Q ss_pred HHHHHHHHHHhcCCcccHHHHHHHHHHHhccCCCchHHHHhHHH
Q psy14212 14 LHQRYADILYTQGGLENIELAISHYLMAINLNEKNIRALYGLAL 57 (111)
Q Consensus 14 ~h~rlAEi~Yt~Gg~enl~~A~kyf~~aleL~~~~lRalyGL~l 57 (111)
++..+|.+++-.| +++.|.++|.++++++|++.++++-+-.
T Consensus 182 ~~~~la~~~~~~~---~~~~A~~~~~~al~~~p~~~~~~~~la~ 222 (389)
T PRK11788 182 FYCELAQQALARG---DLDAARALLKKALAADPQCVRASILLGD 222 (389)
T ss_pred HHHHHHHHHHhCC---CHHHHHHHHHHHHhHCcCCHHHHHHHHH
Confidence 4556677777666 7777888888888877777776655433
No 77
>KOG1155|consensus
Probab=90.76 E-value=1.4 Score=38.51 Aligned_cols=60 Identities=22% Similarity=0.177 Sum_probs=52.4
Q ss_pred cchhcCCCCHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhccCCCchHHHHhHHHHHHHHHhh
Q psy14212 3 ELFLHHPHNHLLHQRYADILYTQGGLENIELAISHYLMAINLNEKNIRALYGLALSCHQVLTS 65 (111)
Q Consensus 3 EvlL~~P~n~~~h~rlAEi~Yt~Gg~enl~~A~kyf~~aleL~~~~lRalyGL~l~~~~l~~~ 65 (111)
+.+-+-|+++.+-+.+||++=..+ +++.|+|-|-+|+.+++.+--|+|-|--.-.++...
T Consensus 423 kA~~~kPnDsRlw~aLG~CY~kl~---~~~eAiKCykrai~~~dte~~~l~~LakLye~l~d~ 482 (559)
T KOG1155|consen 423 KALELKPNDSRLWVALGECYEKLN---RLEEAIKCYKRAILLGDTEGSALVRLAKLYEELKDL 482 (559)
T ss_pred HHHhcCCCchHHHHHHHHHHHHhc---cHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHhH
Confidence 456678999999999999997777 999999999999999999999999887777766654
No 78
>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi. They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].
Probab=90.54 E-value=0.62 Score=39.12 Aligned_cols=59 Identities=24% Similarity=0.283 Sum_probs=51.0
Q ss_pred ccchhcCCCCHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhccCCCchHHHHhHHHHHHHHH
Q psy14212 2 EELFLHHPHNHLLHQRYADILYTQGGLENIELAISHYLMAINLNEKNIRALYGLALSCHQVL 63 (111)
Q Consensus 2 EEvlL~~P~n~~~h~rlAEi~Yt~Gg~enl~~A~kyf~~aleL~~~~lRalyGL~l~~~~l~ 63 (111)
.+.|..+|+++..-.-.|+.+...| +.+.|.+..-+|+++.|+..++||.|..|--++.
T Consensus 224 ~~aL~~~p~d~~LL~~Qa~fLl~k~---~~~lAL~iAk~av~lsP~~f~~W~~La~~Yi~~~ 282 (395)
T PF09295_consen 224 NEALKENPQDSELLNLQAEFLLSKK---KYELALEIAKKAVELSPSEFETWYQLAECYIQLG 282 (395)
T ss_pred HHHHHhCCCCHHHHHHHHHHHHhcC---CHHHHHHHHHHHHHhCchhHHHHHHHHHHHHhcC
Confidence 4667788999888888888888887 7899999999999999999999999998876543
No 79
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=90.41 E-value=0.49 Score=29.18 Aligned_cols=31 Identities=19% Similarity=0.282 Sum_probs=27.1
Q ss_pred HHHHHHHHHHHHhcCCcccHHHHHHHHHHHhccC
Q psy14212 12 HLLHQRYADILYTQGGLENIELAISHYLMAINLN 45 (111)
Q Consensus 12 ~~~h~rlAEi~Yt~Gg~enl~~A~kyf~~aleL~ 45 (111)
...+..+|.+++.+| +++.|.++|-+|+++.
T Consensus 46 a~~~~~lg~~~~~~g---~~~~A~~~~~~al~i~ 76 (78)
T PF13424_consen 46 ANTLNNLGECYYRLG---DYEEALEYYQKALDIF 76 (78)
T ss_dssp HHHHHHHHHHHHHTT---HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcC---CHHHHHHHHHHHHhhh
Confidence 346778899999999 9999999999999874
No 80
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=90.39 E-value=0.72 Score=42.80 Aligned_cols=54 Identities=19% Similarity=0.112 Sum_probs=41.9
Q ss_pred ccchhcCCCCHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhccCCCchHHHHhHHHHH
Q psy14212 2 EELFLHHPHNHLLHQRYADILYTQGGLENIELAISHYLMAINLNEKNIRALYGLALSC 59 (111)
Q Consensus 2 EEvlL~~P~n~~~h~rlAEi~Yt~Gg~enl~~A~kyf~~aleL~~~~lRalyGL~l~~ 59 (111)
++++-++|+ ...|..+|.++.-.| +.+.|...|.++++++|++..+++-+-.+.
T Consensus 600 ~~AL~l~P~-~~a~~~LA~~l~~lG---~~deA~~~l~~AL~l~Pd~~~a~~nLG~aL 653 (987)
T PRK09782 600 TRSLNIAPS-ANAYVARATIYRQRH---NVPAAVSDLRAALELEPNNSNYQAALGYAL 653 (987)
T ss_pred HHHHHhCCC-HHHHHHHHHHHHHCC---CHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Confidence 566778886 777888888888888 888888888889998888887666554443
No 81
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=90.39 E-value=0.82 Score=32.68 Aligned_cols=51 Identities=18% Similarity=0.221 Sum_probs=40.1
Q ss_pred CCCHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhccCCCc---hHHHHhHHHHHHHH
Q psy14212 9 PHNHLLHQRYADILYTQGGLENIELAISHYLMAINLNEKN---IRALYGLALSCHQV 62 (111)
Q Consensus 9 P~n~~~h~rlAEi~Yt~Gg~enl~~A~kyf~~aleL~~~~---lRalyGL~l~~~~l 62 (111)
|.....+..+|.+++..| +++.|..+|.+++++.|+. .-+++.+-.+..++
T Consensus 32 ~~~a~~~~~lg~~~~~~g---~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~ 85 (172)
T PRK02603 32 AKEAFVYYRDGMSAQADG---EYAEALENYEEALKLEEDPNDRSYILYNMGIIYASN 85 (172)
T ss_pred hhhHHHHHHHHHHHHHcC---CHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHc
Confidence 366777888899998888 9999999999999988753 45677666666543
No 82
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=90.35 E-value=0.61 Score=41.39 Aligned_cols=53 Identities=9% Similarity=-0.030 Sum_probs=43.9
Q ss_pred ccchhcCCCCHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhccCCCchHHHHhHHHH
Q psy14212 2 EELFLHHPHNHLLHQRYADILYTQGGLENIELAISHYLMAINLNEKNIRALYGLALS 58 (111)
Q Consensus 2 EEvlL~~P~n~~~h~rlAEi~Yt~Gg~enl~~A~kyf~~aleL~~~~lRalyGL~l~ 58 (111)
++++-..|.+.. +..+|-++..+| +.+.|.+.|.+++++.|++..+++.+..+
T Consensus 107 ~~~l~~~P~~~~-~~~la~~l~~~g---~~~~Al~~l~~al~~~P~~~~~~~~la~~ 159 (765)
T PRK10049 107 KQLVSGAPDKAN-LLALAYVYKRAG---RHWDELRAMTQALPRAPQTQQYPTEYVQA 159 (765)
T ss_pred HHHHHhCCCCHH-HHHHHHHHHHCC---CHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Confidence 566778899988 888899888888 88999999999999999988877765443
No 83
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=90.23 E-value=1.1 Score=34.77 Aligned_cols=51 Identities=22% Similarity=0.100 Sum_probs=43.2
Q ss_pred hcCCCCHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhccCCCchHHHHhHHHHH
Q psy14212 6 LHHPHNHLLHQRYADILYTQGGLENIELAISHYLMAINLNEKNIRALYGLALSC 59 (111)
Q Consensus 6 L~~P~n~~~h~rlAEi~Yt~Gg~enl~~A~kyf~~aleL~~~~lRalyGL~l~~ 59 (111)
-..|..+..+.-+|.++.-+| +++.|...|.++++++|++.-++..+-.+.
T Consensus 108 ~~~~~~~~~~~~~a~~~~~~G---~~~~A~~~~~~al~~~p~~~~~~~~la~i~ 158 (355)
T cd05804 108 PENPDYWYLLGMLAFGLEEAG---QYDRAEEAARRALELNPDDAWAVHAVAHVL 158 (355)
T ss_pred cCCCCcHHHHHHHHHHHHHcC---CHHHHHHHHHHHHhhCCCCcHHHHHHHHHH
Confidence 356888888889999999999 899999999999999999977766664444
No 84
>PLN02789 farnesyltranstransferase
Probab=89.82 E-value=0.73 Score=37.31 Aligned_cols=58 Identities=12% Similarity=0.008 Sum_probs=44.6
Q ss_pred ccchhcCCCCHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhccCCCchHHHHhHHHHHHH
Q psy14212 2 EELFLHHPHNHLLHQRYADILYTQGGLENIELAISHYLMAINLNEKNIRALYGLALSCHQ 61 (111)
Q Consensus 2 EEvlL~~P~n~~~h~rlAEi~Yt~Gg~enl~~A~kyf~~aleL~~~~lRalyGL~l~~~~ 61 (111)
+++|.++|.++-...--+.++...| ++++.++..+.++++.+|+|.-+|+--..+..+
T Consensus 61 ~~aI~lnP~~ytaW~~R~~iL~~L~--~~l~eeL~~~~~~i~~npknyqaW~~R~~~l~~ 118 (320)
T PLN02789 61 ADVIRLNPGNYTVWHFRRLCLEALD--ADLEEELDFAEDVAEDNPKNYQIWHHRRWLAEK 118 (320)
T ss_pred HHHHHHCchhHHHHHHHHHHHHHcc--hhHHHHHHHHHHHHHHCCcchHHhHHHHHHHHH
Confidence 4678889988877777788888775 367889999999999999888777755444433
No 85
>PRK15331 chaperone protein SicA; Provisional
Probab=89.55 E-value=2 Score=32.26 Aligned_cols=55 Identities=13% Similarity=0.052 Sum_probs=31.0
Q ss_pred hcCCCCHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhccCCCchHHHHhHHHHHHHHH
Q psy14212 6 LHHPHNHLLHQRYADILYTQGGLENIELAISHYLMAINLNEKNIRALYGLALSCHQVL 63 (111)
Q Consensus 6 L~~P~n~~~h~rlAEi~Yt~Gg~enl~~A~kyf~~aleL~~~~lRalyGL~l~~~~l~ 63 (111)
+.+|.|+-|..-||-++=..+ +++.|.--|+.|.-+.+++.|..|=.-.|--.+.
T Consensus 65 ~~d~~n~~Y~~GLaa~~Q~~k---~y~~Ai~~Y~~A~~l~~~dp~p~f~agqC~l~l~ 119 (165)
T PRK15331 65 IYDFYNPDYTMGLAAVCQLKK---QFQKACDLYAVAFTLLKNDYRPVFFTGQCQLLMR 119 (165)
T ss_pred HhCcCcHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHcccCCCCccchHHHHHHHhC
Confidence 345555555555555555555 5566666666666665555555555555544433
No 86
>PRK10153 DNA-binding transcriptional activator CadC; Provisional
Probab=89.35 E-value=0.54 Score=40.51 Aligned_cols=39 Identities=15% Similarity=-0.016 Sum_probs=33.7
Q ss_pred cCCCCHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhccCCCc
Q psy14212 7 HHPHNHLLHQRYADILYTQGGLENIELAISHYLMAINLNEKN 48 (111)
Q Consensus 7 ~~P~n~~~h~rlAEi~Yt~Gg~enl~~A~kyf~~aleL~~~~ 48 (111)
..|.++..|.-+|-+....| +.+.|..+|.+|++|+|+.
T Consensus 415 ~~~~~~~~~~ala~~~~~~g---~~~~A~~~l~rAl~L~ps~ 453 (517)
T PRK10153 415 ELNVLPRIYEILAVQALVKG---KTDEAYQAINKAIDLEMSW 453 (517)
T ss_pred cCcCChHHHHHHHHHHHhcC---CHHHHHHHHHHHHHcCCCH
Confidence 47788888999998888887 8999999999999999964
No 87
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=89.02 E-value=2.9 Score=25.59 Aligned_cols=31 Identities=16% Similarity=0.215 Sum_probs=26.1
Q ss_pred HHHHHHHHHHHHhcCCcccHHHHHHHHHHHhccC
Q psy14212 12 HLLHQRYADILYTQGGLENIELAISHYLMAINLN 45 (111)
Q Consensus 12 ~~~h~rlAEi~Yt~Gg~enl~~A~kyf~~aleL~ 45 (111)
...+..+|.+++-.| +++.|+.+|.+|+++.
T Consensus 5 a~~~~~la~~~~~~~---~~~~A~~~~~~al~~~ 35 (78)
T PF13424_consen 5 ANAYNNLARVYRELG---RYDEALDYYEKALDIE 35 (78)
T ss_dssp HHHHHHHHHHHHHTT----HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcC---CHHHHHHHHHHHHHHH
Confidence 456778899999888 9999999999999884
No 88
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=88.78 E-value=1.2 Score=32.70 Aligned_cols=59 Identities=17% Similarity=0.152 Sum_probs=45.0
Q ss_pred ccchhcCCCCHHHH-----------------HHHHHHHHhcCCcccHHHHHHHHHHHhccCCC---chHHHHhHHHHHHH
Q psy14212 2 EELFLHHPHNHLLH-----------------QRYADILYTQGGLENIELAISHYLMAINLNEK---NIRALYGLALSCHQ 61 (111)
Q Consensus 2 EEvlL~~P~n~~~h-----------------~rlAEi~Yt~Gg~enl~~A~kyf~~aleL~~~---~lRalyGL~l~~~~ 61 (111)
++++-..|.+...+ ..+|++++..| +...|+.+|..+++.+|+ ..+|+|.+..+-.+
T Consensus 139 ~~~~~~~p~~~~~~~a~~~~~~~~~~~~~~~~~~a~~~~~~g---~~~~A~~~~~~al~~~p~~~~~~~a~~~l~~~~~~ 215 (235)
T TIGR03302 139 QELIRRYPNSEYAPDAKKRMDYLRNRLAGKELYVARFYLKRG---AYVAAINRFETVVENYPDTPATEEALARLVEAYLK 215 (235)
T ss_pred HHHHHHCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC---ChHHHHHHHHHHHHHCCCCcchHHHHHHHHHHHHH
Confidence 45666778776543 35688888888 999999999999999875 46888887776654
Q ss_pred HH
Q psy14212 62 VL 63 (111)
Q Consensus 62 l~ 63 (111)
+.
T Consensus 216 lg 217 (235)
T TIGR03302 216 LG 217 (235)
T ss_pred cC
Confidence 43
No 89
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=88.13 E-value=0.8 Score=35.87 Aligned_cols=45 Identities=13% Similarity=0.137 Sum_probs=37.7
Q ss_pred ccchhcCCCCHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhccCCCch
Q psy14212 2 EELFLHHPHNHLLHQRYADILYTQGGLENIELAISHYLMAINLNEKNI 49 (111)
Q Consensus 2 EEvlL~~P~n~~~h~rlAEi~Yt~Gg~enl~~A~kyf~~aleL~~~~l 49 (111)
++++-..|.+...+..+|+++.-.| +++.|.++|.++++.+|++.
T Consensus 204 ~~al~~~p~~~~~~~~la~~~~~~g---~~~~A~~~~~~~~~~~p~~~ 248 (389)
T PRK11788 204 KKALAADPQCVRASILLGDLALAQG---DYAAAIEALERVEEQDPEYL 248 (389)
T ss_pred HHHHhHCcCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHHHChhhH
Confidence 4556678888888888999998888 89999999999999988764
No 90
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=87.94 E-value=0.24 Score=37.81 Aligned_cols=48 Identities=23% Similarity=0.176 Sum_probs=38.3
Q ss_pred CCCCHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhccCCCchHHHHhHHHH
Q psy14212 8 HPHNHLLHQRYADILYTQGGLENIELAISHYLMAINLNEKNIRALYGLALS 58 (111)
Q Consensus 8 ~P~n~~~h~rlAEi~Yt~Gg~enl~~A~kyf~~aleL~~~~lRalyGL~l~ 58 (111)
.|.|+-++..||.+++..| +.+.|+.+|.++++.+|++...+.-+--+
T Consensus 210 ~~~~~~~~~~la~~~~~lg---~~~~Al~~~~~~~~~~p~d~~~~~~~a~~ 257 (280)
T PF13429_consen 210 APDDPDLWDALAAAYLQLG---RYEEALEYLEKALKLNPDDPLWLLAYADA 257 (280)
T ss_dssp -HTSCCHCHHHHHHHHHHT----HHHHHHHHHHHHHHSTT-HHHHHHHHHH
T ss_pred CcCHHHHHHHHHHHhcccc---ccccccccccccccccccccccccccccc
Confidence 4788888899999999999 89999999999999999888766654443
No 91
>KOG4626|consensus
Probab=87.86 E-value=2.2 Score=38.96 Aligned_cols=59 Identities=25% Similarity=0.220 Sum_probs=51.4
Q ss_pred ccchhcCCCCHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhccCCCchHHHHhHHHHHHHHH
Q psy14212 2 EELFLHHPHNHLLHQRYADILYTQGGLENIELAISHYLMAINLNEKNIRALYGLALSCHQVL 63 (111)
Q Consensus 2 EEvlL~~P~n~~~h~rlAEi~Yt~Gg~enl~~A~kyf~~aleL~~~~lRalyGL~l~~~~l~ 63 (111)
+-.|.++|.=.--|.-+|-++=-.| |++.|+.-|..+++|.||..-|.--+..|-.-+.
T Consensus 446 ~rAI~~nPt~AeAhsNLasi~kDsG---ni~~AI~sY~~aLklkPDfpdA~cNllh~lq~vc 504 (966)
T KOG4626|consen 446 TRAIQINPTFAEAHSNLASIYKDSG---NIPEAIQSYRTALKLKPDFPDAYCNLLHCLQIVC 504 (966)
T ss_pred HHHHhcCcHHHHHHhhHHHHhhccC---CcHHHHHHHHHHHccCCCCchhhhHHHHHHHHHh
Confidence 4568889988888999999988888 9999999999999999999999888888776444
No 92
>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases. Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding
Probab=87.33 E-value=4.3 Score=31.30 Aligned_cols=39 Identities=23% Similarity=0.181 Sum_probs=35.4
Q ss_pred ccHHHHHHHHHHHhccCCCchHHHHhHHHHHHHHHhhhh
Q psy14212 29 ENIELAISHYLMAINLNEKNIRALYGLALSCHQVLTSAK 67 (111)
Q Consensus 29 enl~~A~kyf~~aleL~~~~lRalyGL~l~~~~l~~~~k 67 (111)
++...+.++|..+++++|++.++|+.+-.....+....+
T Consensus 272 ~~~~~~~~~~~~a~~~~~~~~k~~~~~a~~~~~~~~~~~ 310 (352)
T PF02259_consen 272 ESSDEILKYYKEATKLDPSWEKAWHSWALFNDKLLESDP 310 (352)
T ss_pred ccHHHHHHHHHHHHHhChhHHHHHHHHHHHHHHHHHhhh
Confidence 588999999999999999999999999999999887543
No 93
>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A.
Probab=86.41 E-value=1 Score=24.06 Aligned_cols=29 Identities=24% Similarity=0.265 Sum_probs=23.8
Q ss_pred HHHHHHHHHhcCCcccHHHHHHHHHHHhccCC
Q psy14212 15 HQRYADILYTQGGLENIELAISHYLMAINLNE 46 (111)
Q Consensus 15 h~rlAEi~Yt~Gg~enl~~A~kyf~~aleL~~ 46 (111)
...+|.+++.+| +++.|.++|-+++++..
T Consensus 5 ~~~la~~~~~~g---~~~~A~~~~~~al~~~~ 33 (42)
T PF13374_consen 5 LNNLANAYRAQG---RYEEALELLEEALEIRE 33 (42)
T ss_dssp HHHHHHHHHHCT----HHHHHHHHHHHHHHH-
T ss_pred HHHHHHHHHhhh---hcchhhHHHHHHHHHHH
Confidence 456899999998 99999999999998753
No 94
>PF10516 SHNi-TPR: SHNi-TPR; InterPro: IPR019544 The tetratrico peptide repeat region (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. This entry represents SHNi-TPR (Sim3-Hif1-NASP interrupted TPR), a sequence that is an interrupted form of TPR repeat [].
Probab=86.13 E-value=1.4 Score=25.35 Aligned_cols=30 Identities=27% Similarity=0.377 Sum_probs=26.3
Q ss_pred HHHHHHHHHHhcCCcccHHHHHHHHHHHhccCC
Q psy14212 14 LHQRYADILYTQGGLENIELAISHYLMAINLNE 46 (111)
Q Consensus 14 ~h~rlAEi~Yt~Gg~enl~~A~kyf~~aleL~~ 46 (111)
.|.++|||-...+ |++.|..-|-.++++..
T Consensus 3 v~~~Lgeisle~e---~f~qA~~D~~~aL~i~~ 32 (38)
T PF10516_consen 3 VYDLLGEISLENE---NFEQAIEDYEKALEIQE 32 (38)
T ss_pred HHHHHHHHHHHhc---cHHHHHHHHHHHHHHHH
Confidence 5889999999887 99999999999998753
No 95
>PRK10153 DNA-binding transcriptional activator CadC; Provisional
Probab=86.03 E-value=1.4 Score=37.99 Aligned_cols=50 Identities=14% Similarity=-0.005 Sum_probs=37.9
Q ss_pred CCCHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhccCCCchHHHHhHHHHH
Q psy14212 9 PHNHLLHQRYADILYTQGGLENIELAISHYLMAINLNEKNIRALYGLALSC 59 (111)
Q Consensus 9 P~n~~~h~rlAEi~Yt~Gg~enl~~A~kyf~~aleL~~~~lRalyGL~l~~ 59 (111)
|.+|-.+.| |.-++-.+..+++..|+..|.+||++.|++.+|+=|+.+|-
T Consensus 337 ~~Ay~~~lr-g~~~~~~~~~~~~~~A~~lle~Ai~ldP~~a~a~A~la~~~ 386 (517)
T PRK10153 337 GAALTLFYQ-AHHYLNSGDAKSLNKASDLLEEILKSEPDFTYAQAEKALAD 386 (517)
T ss_pred HHHHHHHHH-HHHHHhcCCHHHHHHHHHHHHHHHHhCCCcHHHHHHHHHHH
Confidence 344555555 44444456677899999999999999999999998886655
No 96
>PF02064 MAS20: MAS20 protein import receptor; InterPro: IPR002056 Virtually all mitochondrial precursors are imported via the same mechanism []: precursors first bind to receptors on the mitochondrial surface, then insert into the translocation channel in the outer membrane. Many outer-membrane proteins participate in the early stages of import, four of which (MAS20, MAS22, MAS37 and MAS70) are components of the receptor. MAS20, which forms a subcomplex with MAS22, seems to interact with most or all mitochondrial precursors, suggesting that the protein binds directly to mitochondrial targeting sequences. The MAS37 and MAS70 components also form a subcomplex, the two subcomplexes possibly binding via their trans- membrane (TM) regions - the TM region of MAS70 promotes oligomerisation of attatched protein domains and shares sequence similarity with the TM region of MAS20 []. MAS20 is also known as TOM20.; GO: 0006605 protein targeting, 0006886 intracellular protein transport, 0005742 mitochondrial outer membrane translocase complex; PDB: 3AX3_A 3AWR_B 2V1S_A 3AX5_C 3AX2_C 1OM2_A 2V1T_B.
Probab=86.00 E-value=1.4 Score=31.48 Aligned_cols=31 Identities=23% Similarity=0.375 Sum_probs=27.1
Q ss_pred HHHHHHHHHHhcCCcccHHHHHHHHHHHhccCCC
Q psy14212 14 LHQRYADILYTQGGLENIELAISHYLMAINLNEK 47 (111)
Q Consensus 14 ~h~rlAEi~Yt~Gg~enl~~A~kyf~~aleL~~~ 47 (111)
-+..+||.+-+.| +++.|..||..||..||+
T Consensus 65 ~qV~lGE~L~~~G---~~~~aa~hf~nAl~V~~q 95 (121)
T PF02064_consen 65 QQVQLGEQLLAQG---DYEEAAEHFYNALKVCPQ 95 (121)
T ss_dssp HHHHHHHHHHHTT----HHHHHHHHHHHHHTSSS
T ss_pred HHHHHHHHHHhCC---CHHHHHHHHHHHHHhCCC
Confidence 4678999999988 899999999999999995
No 97
>KOG1126|consensus
Probab=85.78 E-value=0.78 Score=40.95 Aligned_cols=42 Identities=29% Similarity=0.396 Sum_probs=22.4
Q ss_pred ccchhcCCCCHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhccCC
Q psy14212 2 EELFLHHPHNHLLHQRYADILYTQGGLENIELAISHYLMAINLNE 46 (111)
Q Consensus 2 EEvlL~~P~n~~~h~rlAEi~Yt~Gg~enl~~A~kyf~~aleL~~ 46 (111)
|||--+.|.+...|.-+|-|+=.+| +...|+++|.-|.+|.|
T Consensus 581 EeLk~~vP~es~v~~llgki~k~~~---~~~~Al~~f~~A~~ldp 622 (638)
T KOG1126|consen 581 EELKELVPQESSVFALLGKIYKRLG---NTDLALLHFSWALDLDP 622 (638)
T ss_pred HHHHHhCcchHHHHHHHHHHHHHHc---cchHHHHhhHHHhcCCC
Confidence 4555555555555555555555555 44555555555555555
No 98
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=85.46 E-value=18 Score=29.43 Aligned_cols=57 Identities=9% Similarity=-0.063 Sum_probs=43.8
Q ss_pred ccchhcCCCCHHHH-HHHHHHHHhcCCcccHHHHHHHHHHHhccCCCchHHHHhHHHHHHH
Q psy14212 2 EELFLHHPHNHLLH-QRYADILYTQGGLENIELAISHYLMAINLNEKNIRALYGLALSCHQ 61 (111)
Q Consensus 2 EEvlL~~P~n~~~h-~rlAEi~Yt~Gg~enl~~A~kyf~~aleL~~~~lRalyGL~l~~~~ 61 (111)
+++.-.+|.+.... .+.|+++...| +.+.|.+++.+.++..|++..++.=+..+--+
T Consensus 142 ~~A~~~~~~~~~~~~l~~a~l~l~~g---~~~~Al~~l~~~~~~~P~~~~al~ll~~~~~~ 199 (398)
T PRK10747 142 ERAAELADNDQLPVEITRVRIQLARN---ENHAARHGVDKLLEVAPRHPEVLRLAEQAYIR 199 (398)
T ss_pred HHHHhcCCcchHHHHHHHHHHHHHCC---CHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHH
Confidence 44555678876544 45599999888 89999999999999999998887766655443
No 99
>PRK14574 hmsH outer membrane protein; Provisional
Probab=85.41 E-value=1.4 Score=40.25 Aligned_cols=52 Identities=10% Similarity=0.085 Sum_probs=43.5
Q ss_pred CCCCHHHHHHH--HHHHHhcCCcccHHHHHHHHHHHhccCCCchHHHHhHHHHHHHH
Q psy14212 8 HPHNHLLHQRY--ADILYTQGGLENIELAISHYLMAINLNEKNIRALYGLALSCHQV 62 (111)
Q Consensus 8 ~P~n~~~h~rl--AEi~Yt~Gg~enl~~A~kyf~~aleL~~~~lRalyGL~l~~~~l 62 (111)
.|.|..++..+ |.++--+| ++..|+..|.+++++.|+|.-+++|+.+.....
T Consensus 96 ~p~n~~~~~llalA~ly~~~g---dyd~Aiely~kaL~~dP~n~~~l~gLa~~y~~~ 149 (822)
T PRK14574 96 SSMNISSRGLASAARAYRNEK---RWDQALALWQSSLKKDPTNPDLISGMIMTQADA 149 (822)
T ss_pred cCCCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHhhCCCCHHHHHHHHHHHhhc
Confidence 67777788888 55888778 889999999999999999999999987765544
No 100
>KOG0624|consensus
Probab=84.92 E-value=6.5 Score=33.75 Aligned_cols=55 Identities=31% Similarity=0.307 Sum_probs=49.1
Q ss_pred cchhcCCCCHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhccCCCchHHHHhHHHHHH
Q psy14212 3 ELFLHHPHNHLLHQRYADILYTQGGLENIELAISHYLMAINLNEKNIRALYGLALSCH 60 (111)
Q Consensus 3 EvlL~~P~n~~~h~rlAEi~Yt~Gg~enl~~A~kyf~~aleL~~~~lRalyGL~l~~~ 60 (111)
|||-+.|.|......=||.+. |.|.+..|+.-|..|.|+|++|-|+==|+--+-+
T Consensus 332 evL~~d~~dv~~l~dRAeA~l---~dE~YD~AI~dye~A~e~n~sn~~~reGle~Akr 386 (504)
T KOG0624|consen 332 EVLDIDPDDVQVLCDRAEAYL---GDEMYDDAIHDYEKALELNESNTRAREGLERAKR 386 (504)
T ss_pred HHHhcCchHHHHHHHHHHHHh---hhHHHHHHHHHHHHHHhcCcccHHHHHHHHHHHH
Confidence 789999998888888899887 6789999999999999999999999999876644
No 101
>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]
Probab=84.13 E-value=4.3 Score=32.62 Aligned_cols=56 Identities=20% Similarity=0.082 Sum_probs=43.6
Q ss_pred cCCCCHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhccCCCchHHHHhHHHHHHHHHhh
Q psy14212 7 HHPHNHLLHQRYADILYTQGGLENIELAISHYLMAINLNEKNIRALYGLALSCHQVLTS 65 (111)
Q Consensus 7 ~~P~n~~~h~rlAEi~Yt~Gg~enl~~A~kyf~~aleL~~~~lRalyGL~l~~~~l~~~ 65 (111)
-.|.+.-.+.-+|-.+.-.| |+..|..+|-++..+.|++-|+|=|+-.+..++-+.
T Consensus 95 ~~~~d~~ll~~~gk~~~~~g---~~~~A~~~~rkA~~l~p~d~~~~~~lgaaldq~Gr~ 150 (257)
T COG5010 95 AYPKDRELLAAQGKNQIRNG---NFGEAVSVLRKAARLAPTDWEAWNLLGAALDQLGRF 150 (257)
T ss_pred cCcccHHHHHHHHHHHHHhc---chHHHHHHHHHHhccCCCChhhhhHHHHHHHHccCh
Confidence 34555555555666667667 899999999999999999999999998888877654
No 102
>PRK15331 chaperone protein SicA; Provisional
Probab=84.09 E-value=4.2 Score=30.57 Aligned_cols=46 Identities=22% Similarity=0.190 Sum_probs=40.1
Q ss_pred HHHHHHHhcCCcccHHHHHHHHHHHhccCCCchHHHHhHHHHHHHHHhh
Q psy14212 17 RYADILYTQGGLENIELAISHYLMAINLNEKNIRALYGLALSCHQVLTS 65 (111)
Q Consensus 17 rlAEi~Yt~Gg~enl~~A~kyf~~aleL~~~~lRalyGL~l~~~~l~~~ 65 (111)
++|=-.|.+| ++..|.+.|..-.-+++.|.|=|.||-.|+..+.+-
T Consensus 42 ~~Ay~~y~~G---k~~eA~~~F~~L~~~d~~n~~Y~~GLaa~~Q~~k~y 87 (165)
T PRK15331 42 AHAYEFYNQG---RLDEAETFFRFLCIYDFYNPDYTMGLAAVCQLKKQF 87 (165)
T ss_pred HHHHHHHHCC---CHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHHHHH
Confidence 4566778888 999999999999999999999999999999866544
No 103
>PF13512 TPR_18: Tetratricopeptide repeat
Probab=83.58 E-value=13 Score=27.28 Aligned_cols=49 Identities=29% Similarity=0.241 Sum_probs=37.4
Q ss_pred CCCHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhccCCCchH---HHHhHHHHHH
Q psy14212 9 PHNHLLHQRYADILYTQGGLENIELAISHYLMAINLNEKNIR---ALYGLALSCH 60 (111)
Q Consensus 9 P~n~~~h~rlAEi~Yt~Gg~enl~~A~kyf~~aleL~~~~lR---alyGL~l~~~ 60 (111)
|.....-..+|+.+|-.| +++.|+.-|-+=|+|+|++.. |+|-.-|+.-
T Consensus 44 ~ya~qAqL~l~yayy~~~---~y~~A~a~~~rFirLhP~hp~vdYa~Y~~gL~~~ 95 (142)
T PF13512_consen 44 EYAEQAQLDLAYAYYKQG---DYEEAIAAYDRFIRLHPTHPNVDYAYYMRGLSYY 95 (142)
T ss_pred cccHHHHHHHHHHHHHcc---CHHHHHHHHHHHHHhCCCCCCccHHHHHHHHHHH
Confidence 455566788999999998 999999999999999996543 3444444443
No 104
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=83.08 E-value=3.6 Score=36.89 Aligned_cols=53 Identities=11% Similarity=0.037 Sum_probs=42.4
Q ss_pred CCCCHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhccCCCchHHHHhHHHHHHHHH
Q psy14212 8 HPHNHLLHQRYADILYTQGGLENIELAISHYLMAINLNEKNIRALYGLALSCHQVL 63 (111)
Q Consensus 8 ~P~n~~~h~rlAEi~Yt~Gg~enl~~A~kyf~~aleL~~~~lRalyGL~l~~~~l~ 63 (111)
-|++.-.|..+|++.-..| .++.|...+.++++++|++.=|...+..+..+.-
T Consensus 82 ~~~~~~~~~~La~i~~~~g---~~~ea~~~l~~~~~~~Pd~~~a~~~~a~~L~~~~ 134 (694)
T PRK15179 82 YPHTELFQVLVARALEAAH---RSDEGLAVWRGIHQRFPDSSEAFILMLRGVKRQQ 134 (694)
T ss_pred ccccHHHHHHHHHHHHHcC---CcHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhc
Confidence 4778888889999999888 8888999999999999988877666666655433
No 105
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=82.88 E-value=2.1 Score=29.74 Aligned_cols=32 Identities=25% Similarity=0.344 Sum_probs=23.5
Q ss_pred CCCCHHHHHHHHHHHHhcCCcccHHHHHHHHHHHh
Q psy14212 8 HPHNHLLHQRYADILYTQGGLENIELAISHYLMAI 42 (111)
Q Consensus 8 ~P~n~~~h~rlAEi~Yt~Gg~enl~~A~kyf~~al 42 (111)
.|..+.++...|+|+...| +.+.|++.|.+||
T Consensus 114 ~~~~~~~~~~~Gdi~~~~g---~~~~A~~~y~~Al 145 (145)
T PF09976_consen 114 EAFKALAAELLGDIYLAQG---DYDEARAAYQKAL 145 (145)
T ss_pred cchHHHHHHHHHHHHHHCC---CHHHHHHHHHHhC
Confidence 4555667777788888777 7788888887764
No 106
>PF14561 TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S_A 3QDN_B.
Probab=82.05 E-value=2.7 Score=27.97 Aligned_cols=44 Identities=20% Similarity=0.268 Sum_probs=36.2
Q ss_pred ccchhcCCCCHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhccCCCc
Q psy14212 2 EELFLHHPHNHLLHQRYADILYTQGGLENIELAISHYLMAINLNEKN 48 (111)
Q Consensus 2 EEvlL~~P~n~~~h~rlAEi~Yt~Gg~enl~~A~kyf~~aleL~~~~ 48 (111)
|..+-.+|.|+-....+|+.+...| +++.|...+...|+-++++
T Consensus 12 ~~~~a~~P~D~~ar~~lA~~~~~~g---~~e~Al~~Ll~~v~~dr~~ 55 (90)
T PF14561_consen 12 EAALAANPDDLDARYALADALLAAG---DYEEALDQLLELVRRDRDY 55 (90)
T ss_dssp HHHHHHSTT-HHHHHHHHHHHHHTT----HHHHHHHHHHHHCC-TTC
T ss_pred HHHHHcCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHHhCccc
Confidence 4456679999999999999999888 9999999999999998865
No 107
>PRK11906 transcriptional regulator; Provisional
Probab=81.85 E-value=3.4 Score=35.64 Aligned_cols=47 Identities=9% Similarity=-0.088 Sum_probs=40.7
Q ss_pred chhcCCCCHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhccCCCchHHHH
Q psy14212 4 LFLHHPHNHLLHQRYADILYTQGGLENIELAISHYLMAINLNEKNIRALY 53 (111)
Q Consensus 4 vlL~~P~n~~~h~rlAEi~Yt~Gg~enl~~A~kyf~~aleL~~~~lRaly 53 (111)
++-++|.|+..|..+|-+.--.| .+..|.--|.||++|||+..=++|
T Consensus 330 Aveld~~Da~a~~~~g~~~~~~~---~~~~a~~~f~rA~~L~Pn~A~~~~ 376 (458)
T PRK11906 330 VSDITTVDGKILAIMGLITGLSG---QAKVSHILFEQAKIHSTDIASLYY 376 (458)
T ss_pred HHhcCCCCHHHHHHHHHHHHhhc---chhhHHHHHHHHhhcCCccHHHHH
Confidence 45689999999999999988888 489999999999999998776655
No 108
>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]
Probab=81.83 E-value=2.6 Score=34.32 Aligned_cols=51 Identities=22% Similarity=0.219 Sum_probs=44.1
Q ss_pred ccchhcCCCCHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhccCCCchHHHHhH
Q psy14212 2 EELFLHHPHNHLLHQRYADILYTQGGLENIELAISHYLMAINLNEKNIRALYGL 55 (111)
Q Consensus 2 EEvlL~~P~n~~~h~rlAEi~Yt~Gg~enl~~A~kyf~~aleL~~~~lRalyGL 55 (111)
|..|-.||+|.-=-..||+++-..| ++..|..-|.+|++|.|+|.=-+=|+
T Consensus 146 e~~L~~nP~d~egW~~Lg~~ym~~~---~~~~A~~AY~~A~rL~g~n~~~~~g~ 196 (287)
T COG4235 146 ETHLQQNPGDAEGWDLLGRAYMALG---RASDALLAYRNALRLAGDNPEILLGL 196 (287)
T ss_pred HHHHHhCCCCchhHHHHHHHHHHhc---chhHHHHHHHHHHHhCCCCHHHHHHH
Confidence 4556789999999999999999999 99999999999999999887555444
No 109
>PRK14574 hmsH outer membrane protein; Provisional
Probab=81.77 E-value=4.1 Score=37.26 Aligned_cols=61 Identities=16% Similarity=0.090 Sum_probs=55.7
Q ss_pred CccchhcCCCCHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhccCCCchHHHHhHHHHHHHHHh
Q psy14212 1 MEELFLHHPHNHLLHQRYADILYTQGGLENIELAISHYLMAINLNEKNIRALYGLALSCHQVLT 64 (111)
Q Consensus 1 ~EEvlL~~P~n~~~h~rlAEi~Yt~Gg~enl~~A~kyf~~aleL~~~~lRalyGL~l~~~~l~~ 64 (111)
+|+++-..|.|.-+-..+|+|+=..| +...|...|-.+..+.|++.++.+|...+.-.+-+
T Consensus 439 le~l~~~aP~n~~l~~~~A~v~~~Rg---~p~~A~~~~k~a~~l~P~~~~~~~~~~~~al~l~e 499 (822)
T PRK14574 439 LEDLSSTAPANQNLRIALASIYLARD---LPRKAEQELKAVESLAPRSLILERAQAETAMALQE 499 (822)
T ss_pred HHHHHHhCCCCHHHHHHHHHHHHhcC---CHHHHHHHHHHHhhhCCccHHHHHHHHHHHHhhhh
Confidence 47888999999999999999999999 99999999999999999999999999888876643
No 110
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=81.32 E-value=3.1 Score=29.42 Aligned_cols=47 Identities=19% Similarity=0.084 Sum_probs=35.2
Q ss_pred ccchhcCCCCHHHHHHHHHHHHhcC-------C----cccHHHHHHHHHHHhccCCCc
Q psy14212 2 EELFLHHPHNHLLHQRYADILYTQG-------G----LENIELAISHYLMAINLNEKN 48 (111)
Q Consensus 2 EEvlL~~P~n~~~h~rlAEi~Yt~G-------g----~enl~~A~kyf~~aleL~~~~ 48 (111)
+.++-++|.+...|..+|-+++-.| . ..++..|..+|.+++.+.|++
T Consensus 96 ~~Al~~~~~~~~~~~~la~i~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~a~~~~p~~ 153 (168)
T CHL00033 96 FQALERNPFLPQALNNMAVICHYRGEQAIEQGDSEIAEAWFDQAAEYWKQAIALAPGN 153 (168)
T ss_pred HHHHHhCcCcHHHHHHHHHHHHHhhHHHHHcccHHHHHHHHHHHHHHHHHHHHhCccc
Confidence 4566778999999999999999444 2 124667888888888888853
No 111
>PRK11906 transcriptional regulator; Provisional
Probab=80.84 E-value=2.4 Score=36.61 Aligned_cols=45 Identities=18% Similarity=0.084 Sum_probs=40.4
Q ss_pred ccchhcCCCCHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhccCCCch
Q psy14212 2 EELFLHHPHNHLLHQRYADILYTQGGLENIELAISHYLMAINLNEKNI 49 (111)
Q Consensus 2 EEvlL~~P~n~~~h~rlAEi~Yt~Gg~enl~~A~kyf~~aleL~~~~l 49 (111)
|=.+.++|+....+.-.|-+....| +.+.|+.+..+|++|+|.-.
T Consensus 362 ~rA~~L~Pn~A~~~~~~~~~~~~~G---~~~~a~~~i~~alrLsP~~~ 406 (458)
T PRK11906 362 EQAKIHSTDIASLYYYRALVHFHNE---KIEEARICIDKSLQLEPRRR 406 (458)
T ss_pred HHHhhcCCccHHHHHHHHHHHHHcC---CHHHHHHHHHHHhccCchhh
Confidence 3457899999999999999999999 89999999999999999543
No 112
>KOG0543|consensus
Probab=80.77 E-value=6.5 Score=33.43 Aligned_cols=44 Identities=23% Similarity=0.324 Sum_probs=38.2
Q ss_pred ccchhcCCCCHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhccCCCc
Q psy14212 2 EELFLHHPHNHLLHQRYADILYTQGGLENIELAISHYLMAINLNEKN 48 (111)
Q Consensus 2 EEvlL~~P~n~~~h~rlAEi~Yt~Gg~enl~~A~kyf~~aleL~~~~ 48 (111)
+.||-+.|+|.--.-|=|.++-++| .++.||.-|-+++++.|+|
T Consensus 281 ~kvLe~~~~N~KALyRrG~A~l~~~---e~~~A~~df~ka~k~~P~N 324 (397)
T KOG0543|consen 281 NKVLELDPNNVKALYRRGQALLALG---EYDLARDDFQKALKLEPSN 324 (397)
T ss_pred HHHHhcCCCchhHHHHHHHHHHhhc---cHHHHHHHHHHHHHhCCCc
Confidence 3578888888887778899999998 8999999999999999988
No 113
>smart00671 SEL1 Sel1-like repeats. These represent a subfamily of TPR (tetratricopeptide repeat) sequences.
Probab=80.17 E-value=4.6 Score=21.02 Aligned_cols=31 Identities=19% Similarity=0.232 Sum_probs=23.3
Q ss_pred HHHHHHHHHhc-CCcccHHHHHHHHHHHhccC
Q psy14212 15 HQRYADILYTQ-GGLENIELAISHYLMAINLN 45 (111)
Q Consensus 15 h~rlAEi~Yt~-Gg~enl~~A~kyf~~aleL~ 45 (111)
...+|.+++.- |...|...|.++|.+|.+..
T Consensus 4 ~~~lg~~~~~G~g~~~d~~~A~~~~~~Aa~~g 35 (36)
T smart00671 4 QYNLGQMYEYGLGVKKDLEKALEYYKKAAELG 35 (36)
T ss_pred HHHHHHHHHcCCCCCcCHHHHHHHHHHHHHcc
Confidence 34677776654 44679999999999998764
No 114
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=79.96 E-value=3.8 Score=36.79 Aligned_cols=56 Identities=16% Similarity=-0.056 Sum_probs=46.7
Q ss_pred ccchhcCCCCHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhccCCCchHHHHhHHHHHH
Q psy14212 2 EELFLHHPHNHLLHQRYADILYTQGGLENIELAISHYLMAINLNEKNIRALYGLALSCH 60 (111)
Q Consensus 2 EEvlL~~P~n~~~h~rlAEi~Yt~Gg~enl~~A~kyf~~aleL~~~~lRalyGL~l~~~ 60 (111)
|.++-++|.|...|..+|.++=-+| .++.|.-.|.+++.-+|++-.+|.|+-.+-.
T Consensus 144 ~~~l~~~p~~~~~~~~~a~~l~~~g---~~~~A~~~y~~~~~~~p~~~~~~~~~a~~l~ 199 (694)
T PRK15179 144 ELYFSGGSSSAREILLEAKSWDEIG---QSEQADACFERLSRQHPEFENGYVGWAQSLT 199 (694)
T ss_pred HHHhhcCCCCHHHHHHHHHHHHHhc---chHHHHHHHHHHHhcCCCcHHHHHHHHHHHH
Confidence 4567889999999999999999888 8999999999999988887777766655544
No 115
>smart00386 HAT HAT (Half-A-TPR) repeats. Present in several RNA-binding proteins. Structurally and sequentially thought to be similar to TPRs.
Probab=79.88 E-value=2.5 Score=21.14 Aligned_cols=23 Identities=26% Similarity=0.218 Sum_probs=19.4
Q ss_pred cHHHHHHHHHHHhccCCCchHHH
Q psy14212 30 NIELAISHYLMAINLNEKNIRAL 52 (111)
Q Consensus 30 nl~~A~kyf~~aleL~~~~lRal 52 (111)
+.+.|++.|.++++.+|.+..-|
T Consensus 2 ~~~~~r~i~e~~l~~~~~~~~~W 24 (33)
T smart00386 2 DIERARKIYERALEKFPKSVELW 24 (33)
T ss_pred cHHHHHHHHHHHHHHCCCChHHH
Confidence 67899999999999999666544
No 116
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=79.69 E-value=8.2 Score=26.72 Aligned_cols=55 Identities=24% Similarity=0.259 Sum_probs=41.9
Q ss_pred ccchhcCCCC---HHHHHHHHHHHHhcCCcccHHHHHHHHHHHhccCC-CchHHHHhHHHHH
Q psy14212 2 EELFLHHPHN---HLLHQRYADILYTQGGLENIELAISHYLMAINLNE-KNIRALYGLALSC 59 (111)
Q Consensus 2 EEvlL~~P~n---~~~h~rlAEi~Yt~Gg~enl~~A~kyf~~aleL~~-~~lRalyGL~l~~ 59 (111)
|+++--.|.. ..-...+|.+++..| +++.|...|..+++-.| ..+|.+-=+.++.
T Consensus 35 ~~l~~~~~~s~ya~~A~l~lA~~~~~~g---~~~~A~~~l~~~~~~~~d~~l~~~a~l~LA~ 93 (145)
T PF09976_consen 35 EQLAKDYPSSPYAALAALQLAKAAYEQG---DYDEAKAALEKALANAPDPELKPLARLRLAR 93 (145)
T ss_pred HHHHHHCCCChHHHHHHHHHHHHHHHCC---CHHHHHHHHHHHHhhCCCHHHHHHHHHHHHH
Confidence 4556667777 666778999999999 99999999999999886 4566554444443
No 117
>KOG0548|consensus
Probab=78.88 E-value=9.2 Score=33.70 Aligned_cols=37 Identities=19% Similarity=0.178 Sum_probs=30.3
Q ss_pred cHHHHHHHHHHHhccCCCchHHHHhHHHHHHHHHhhh
Q psy14212 30 NIELAISHYLMAINLNEKNIRALYGLALSCHQVLTSA 66 (111)
Q Consensus 30 nl~~A~kyf~~aleL~~~~lRalyGL~l~~~~l~~~~ 66 (111)
+++.|++||.+||+.+|++-|++=---+|-.+|...+
T Consensus 373 dy~~Av~~YteAIkr~P~Da~lYsNRAac~~kL~~~~ 409 (539)
T KOG0548|consen 373 DYPEAVKHYTEAIKRDPEDARLYSNRAACYLKLGEYP 409 (539)
T ss_pred CHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhhHH
Confidence 9999999999999999998887766666666666544
No 118
>PF04090 RNA_pol_I_TF: RNA polymerase I specific initiation factor; InterPro: IPR007224 The RNA polymerase I specific transcription initiation factor Rrn11 is a member of a multiprotein complex essential for the initiation of transcription by RNA polymerase I. Binding to the DNA template is dependent on the initial binding of other factors [].
Probab=78.47 E-value=4.2 Score=31.38 Aligned_cols=41 Identities=22% Similarity=0.237 Sum_probs=32.0
Q ss_pred HHHHHHHhcCCcccHHHHHHHHHHHhccCCCchHHHHhHHH
Q psy14212 17 RYADILYTQGGLENIELAISHYLMAINLNEKNIRALYGLAL 57 (111)
Q Consensus 17 rlAEi~Yt~Gg~enl~~A~kyf~~aleL~~~~lRalyGL~l 57 (111)
++..+++..=-..|++.|.|-||--|...+-++|.+||+=.
T Consensus 43 ~L~~lLh~~llr~d~~rA~Raf~lLiR~~~VDiR~~W~iG~ 83 (199)
T PF04090_consen 43 VLTDLLHLCLLRGDWDRAYRAFGLLIRCPEVDIRSLWGIGA 83 (199)
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHcCCCCChHhcchHHH
Confidence 45566665511229999999999999999999999999743
No 119
>KOG0547|consensus
Probab=78.47 E-value=2.1 Score=37.73 Aligned_cols=33 Identities=27% Similarity=0.356 Sum_probs=25.0
Q ss_pred HHHHHhcCCcccHHHHHHHHHHHhccCCC------chHHHHh
Q psy14212 19 ADILYTQGGLENIELAISHYLMAINLNEK------NIRALYG 54 (111)
Q Consensus 19 AEi~Yt~Gg~enl~~A~kyf~~aleL~~~------~lRalyG 54 (111)
|-=.|+.| +++.|+|||-.||++||+ |.-|-|-
T Consensus 122 GN~~f~~k---kY~eAIkyY~~AI~l~p~epiFYsNraAcY~ 160 (606)
T KOG0547|consen 122 GNKFFRNK---KYDEAIKYYTQAIELCPDEPIFYSNRAACYE 160 (606)
T ss_pred hhhhhhcc---cHHHHHHHHHHHHhcCCCCchhhhhHHHHHH
Confidence 45567777 888888888888888886 6666663
No 120
>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.
Probab=77.34 E-value=6.8 Score=31.18 Aligned_cols=60 Identities=18% Similarity=0.060 Sum_probs=44.2
Q ss_pred CccchhcCCCCHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhccCCCchHHHHhHHHHHHHHH
Q psy14212 1 MEELFLHHPHNHLLHQRYADILYTQGGLENIELAISHYLMAINLNEKNIRALYGLALSCHQVL 63 (111)
Q Consensus 1 ~EEvlL~~P~n~~~h~rlAEi~Yt~Gg~enl~~A~kyf~~aleL~~~~lRalyGL~l~~~~l~ 63 (111)
|||+--.-|.++......|-+.--+| +++.|.+....|++.+|++.-.+..+..|+..+.
T Consensus 190 f~El~~~~~~t~~~lng~A~~~l~~~---~~~eAe~~L~~al~~~~~~~d~LaNliv~~~~~g 249 (290)
T PF04733_consen 190 FEELSDKFGSTPKLLNGLAVCHLQLG---HYEEAEELLEEALEKDPNDPDTLANLIVCSLHLG 249 (290)
T ss_dssp HHHHHCCS--SHHHHHHHHHHHHHCT----HHHHHHHHHHHCCC-CCHHHHHHHHHHHHHHTT
T ss_pred HHHHHhccCCCHHHHHHHHHHHHHhC---CHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHhC
Confidence 35655555778888888888888778 8999999999999999999999988876665433
No 121
>TIGR00985 3a0801s04tom mitochondrial import receptor subunit translocase of outer membrane 20 kDa subunit.
Probab=77.06 E-value=3.9 Score=30.21 Aligned_cols=40 Identities=18% Similarity=0.313 Sum_probs=30.8
Q ss_pred HHHHHHHHHhcCCcccHHHHHHHHHHHhccCCCchHHHHhHHH
Q psy14212 15 HQRYADILYTQGGLENIELAISHYLMAINLNEKNIRALYGLAL 57 (111)
Q Consensus 15 h~rlAEi~Yt~Gg~enl~~A~kyf~~aleL~~~~lRalyGL~l 57 (111)
...+||.+-+.|| +...|.-||..||..||+ .-.|-|++.
T Consensus 93 eV~~GE~L~~~g~--~~~ega~hf~nAl~Vc~q-P~~LL~iyq 132 (148)
T TIGR00985 93 EVQLGEELMAQGT--NVDEGAVHFYNALKVYPQ-PQQLLSIYQ 132 (148)
T ss_pred HHHHHHHHHhCCC--chHHHHHHHHHHHHhCCC-HHHHHHHHH
Confidence 4578999999984 788999999999999984 333444443
No 122
>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]
Probab=76.58 E-value=4.8 Score=32.36 Aligned_cols=46 Identities=15% Similarity=0.096 Sum_probs=40.0
Q ss_pred cchhcCCCCHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhccCCCchHH
Q psy14212 3 ELFLHHPHNHLLHQRYADILYTQGGLENIELAISHYLMAINLNEKNIRA 51 (111)
Q Consensus 3 EvlL~~P~n~~~h~rlAEi~Yt~Gg~enl~~A~kyf~~aleL~~~~lRa 51 (111)
++...+|+||-.|--+|=++==.| +.+.||.-|-+|++|-|++...
T Consensus 125 kA~~l~p~d~~~~~~lgaaldq~G---r~~~Ar~ay~qAl~L~~~~p~~ 170 (257)
T COG5010 125 KAARLAPTDWEAWNLLGAALDQLG---RFDEARRAYRQALELAPNEPSI 170 (257)
T ss_pred HHhccCCCChhhhhHHHHHHHHcc---ChhHHHHHHHHHHHhccCCchh
Confidence 567789999999999998888778 9999999999999999964433
No 123
>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]
Probab=76.50 E-value=5.8 Score=34.53 Aligned_cols=43 Identities=23% Similarity=0.292 Sum_probs=40.0
Q ss_pred cchhcCCCCHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhccCCCc
Q psy14212 3 ELFLHHPHNHLLHQRYADILYTQGGLENIELAISHYLMAINLNEKN 48 (111)
Q Consensus 3 EvlL~~P~n~~~h~rlAEi~Yt~Gg~enl~~A~kyf~~aleL~~~~ 48 (111)
|++--.|.|+.|---.+||+...+ ....|..+|.+++.+.|+.
T Consensus 331 ~L~~~~P~N~~~~~~~~~i~~~~n---k~~~A~e~~~kal~l~P~~ 373 (484)
T COG4783 331 PLIAAQPDNPYYLELAGDILLEAN---KAKEAIERLKKALALDPNS 373 (484)
T ss_pred HHHHhCCCCHHHHHHHHHHHHHcC---ChHHHHHHHHHHHhcCCCc
Confidence 567789999999999999999999 8999999999999999986
No 124
>PF08238 Sel1: Sel1 repeat; InterPro: IPR006597 Sel1-like repeats are tetratricopeptide repeat sequences originally identified in a Caenorhabditis elegans receptor molecule which is a key negative regulator of the Notch pathway []. Mammalian homologues have since been identified although these mainly pancreatic proteins have yet to have a function assigned.; PDB: 2XM6_A 3RJV_A 1OUV_A 1KLX_A.
Probab=75.89 E-value=7 Score=20.73 Aligned_cols=31 Identities=19% Similarity=0.218 Sum_probs=22.5
Q ss_pred HHHHH--HHHHhc--CCcccHHHHHHHHHHHhccC
Q psy14212 15 HQRYA--DILYTQ--GGLENIELAISHYLMAINLN 45 (111)
Q Consensus 15 h~rlA--Ei~Yt~--Gg~enl~~A~kyf~~aleL~ 45 (111)
..++| .+++.- |-..|...|.++|.+|.+.+
T Consensus 4 ~~~lg~~~~~~~g~~g~~~d~~~A~~~~~~Aa~~g 38 (39)
T PF08238_consen 4 QYNLGMYYMYYNGKGGVPKDYEKAFKWYEKAAEQG 38 (39)
T ss_dssp HHHHHHHHHHHHTSTSSCHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHhhhhccCCccccccchHHHHHHHHHcc
Confidence 34667 544554 34669999999999998865
No 125
>PF04781 DUF627: Protein of unknown function (DUF627); InterPro: IPR006866 This domain represents the N-terminal region of several plant proteins of unknown function.
Probab=75.77 E-value=3.5 Score=29.14 Aligned_cols=53 Identities=23% Similarity=0.412 Sum_probs=41.0
Q ss_pred CccchhcCCCC---HHHHHHHHHHHHhcCC-cc-------cHHHHHHHHHHHhccCCCchHHHH
Q psy14212 1 MEELFLHHPHN---HLLHQRYADILYTQGG-LE-------NIELAISHYLMAINLNEKNIRALY 53 (111)
Q Consensus 1 ~EEvlL~~P~n---~~~h~rlAEi~Yt~Gg-~e-------nl~~A~kyf~~aleL~~~~lRaly 53 (111)
+|+++...+.+ |++|..=|.|.|..+. .| .+.-|..-|++++.|+|+..+.||
T Consensus 19 ied~i~~h~~~~~~~~lh~~QG~if~~lA~~ten~d~k~~yLl~sve~~s~a~~Lsp~~A~~L~ 82 (111)
T PF04781_consen 19 IEDLISRHGEDESSWLLHRLQGTIFYKLAKKTENPDVKFRYLLGSVECFSRAVELSPDSAHSLF 82 (111)
T ss_pred HHHHHHHccCCCchHHHHHHHhHHHHHHHHhccCchHHHHHHHHhHHHHHHHhccChhHHHHHH
Confidence 36677777654 5999999999998874 22 467799999999999999855554
No 126
>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional
Probab=74.81 E-value=3.3 Score=38.49 Aligned_cols=41 Identities=22% Similarity=0.100 Sum_probs=35.1
Q ss_pred CccchhcCCCCHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhccC
Q psy14212 1 MEELFLHHPHNHLLHQRYADILYTQGGLENIELAISHYLMAINLN 45 (111)
Q Consensus 1 ~EEvlL~~P~n~~~h~rlAEi~Yt~Gg~enl~~A~kyf~~aleL~ 45 (111)
||++|-.+|+|+..-.+||..+--. |++.|+.||.+||+..
T Consensus 139 yer~L~~D~~n~~aLNn~AY~~ae~----dL~KA~~m~~KAV~~~ 179 (906)
T PRK14720 139 WERLVKADRDNPEIVKKLATSYEEE----DKEKAITYLKKAIYRF 179 (906)
T ss_pred HHHHHhcCcccHHHHHHHHHHHHHh----hHHHHHHHHHHHHHHH
Confidence 5788999999999999999877665 8999999999998875
No 127
>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A.
Probab=74.78 E-value=31 Score=25.42 Aligned_cols=49 Identities=35% Similarity=0.328 Sum_probs=36.0
Q ss_pred CCCHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhccCCCch---HHHHhHHHHHH
Q psy14212 9 PHNHLLHQRYADILYTQGGLENIELAISHYLMAINLNEKNI---RALYGLALSCH 60 (111)
Q Consensus 9 P~n~~~h~rlAEi~Yt~Gg~enl~~A~kyf~~aleL~~~~l---RalyGL~l~~~ 60 (111)
|........+|+.+|..| ++..|+..|.+-++..|+.. .|+|-+-+|.-
T Consensus 39 ~~a~~A~l~la~a~y~~~---~y~~A~~~~~~fi~~yP~~~~~~~A~Y~~g~~~~ 90 (203)
T PF13525_consen 39 PYAPQAQLMLAYAYYKQG---DYEEAIAAYERFIKLYPNSPKADYALYMLGLSYY 90 (203)
T ss_dssp TTHHHHHHHHHHHHHHTT----HHHHHHHHHHHHHH-TT-TTHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHcC---CHHHHHHHHHHHHHHCCCCcchhhHHHHHHHHHH
Confidence 455566788999999998 99999999999999999655 45555555543
No 128
>KOG2396|consensus
Probab=74.25 E-value=4.5 Score=35.70 Aligned_cols=53 Identities=21% Similarity=0.225 Sum_probs=45.4
Q ss_pred CccchhcCCCCHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhccCCCchHHHHhH
Q psy14212 1 MEELFLHHPHNHLLHQRYADILYTQGGLENIELAISHYLMAINLNEKNIRALYGL 55 (111)
Q Consensus 1 ~EEvlL~~P~n~~~h~rlAEi~Yt~Gg~enl~~A~kyf~~aleL~~~~lRalyGL 55 (111)
++++|...|+|+-+-.--|.=.|-.+- |++.||..|.++|.+||++.+-|+-.
T Consensus 128 ~~~~l~~Hp~~~dLWI~aA~wefe~n~--ni~saRalflrgLR~npdsp~Lw~ey 180 (568)
T KOG2396|consen 128 FAAMLAKHPNNPDLWIYAAKWEFEINL--NIESARALFLRGLRFNPDSPKLWKEY 180 (568)
T ss_pred HHHHHHhCCCCchhHHhhhhhHHhhcc--chHHHHHHHHHHhhcCCCChHHHHHH
Confidence 357889999999888888888898873 79999999999999999988766654
No 129
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional
Probab=73.38 E-value=4.7 Score=34.81 Aligned_cols=42 Identities=12% Similarity=-0.084 Sum_probs=36.5
Q ss_pred CccchhcCCCCH---HHHHHHHHHHHhcCCcccHHHHHHHHHHHhccC
Q psy14212 1 MEELFLHHPHNH---LLHQRYADILYTQGGLENIELAISHYLMAINLN 45 (111)
Q Consensus 1 ~EEvlL~~P~n~---~~h~rlAEi~Yt~Gg~enl~~A~kyf~~aleL~ 45 (111)
++.+|-++|++. ..|.-+|-++--+| +++.|+.+|-+||++.
T Consensus 98 f~rALeL~Pd~aeA~~A~yNLAcaya~LG---r~dEAla~LrrALels 142 (453)
T PLN03098 98 FETALELNPNPDEAQAAYYNKACCHAYRE---EGKKAADCLRTALRDY 142 (453)
T ss_pred HHHHHhhCCCchHHHHHHHHHHHHHHHcC---CHHHHHHHHHHHHHhc
Confidence 356788999987 44888899999998 9999999999999984
No 130
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=72.16 E-value=4.6 Score=25.30 Aligned_cols=33 Identities=30% Similarity=0.227 Sum_probs=26.6
Q ss_pred hcCCCCHHHHHHHHHHHHhcCCcccHHHHHHHHHHH
Q psy14212 6 LHHPHNHLLHQRYADILYTQGGLENIELAISHYLMA 41 (111)
Q Consensus 6 L~~P~n~~~h~rlAEi~Yt~Gg~enl~~A~kyf~~a 41 (111)
-.+|.+.-.|.-+|.+++-+| +++.|+++|.++
T Consensus 52 ~~~~~~~~~~~l~a~~~~~l~---~y~eAi~~l~~~ 84 (84)
T PF12895_consen 52 KLDPSNPDIHYLLARCLLKLG---KYEEAIKALEKA 84 (84)
T ss_dssp THHHCHHHHHHHHHHHHHHTT----HHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHHhC---CHHHHHHHHhcC
Confidence 356777777888899999999 999999999764
No 131
>PF07720 TPR_3: Tetratricopeptide repeat; InterPro: IPR011716 This entry includes tetratricopeptide-like repeats found in the LcrH/SycD-like chaperones [].; PDB: 3KS2_O 3GZ2_A 3GZ1_A 3GYZ_A 4AM9_A 2VGX_A 2VGY_A.
Probab=71.86 E-value=7.1 Score=21.93 Aligned_cols=29 Identities=28% Similarity=0.398 Sum_probs=22.1
Q ss_pred HHHHHHHhcCCcccHHHHHHH--HHHHhccCCCc
Q psy14212 17 RYADILYTQGGLENIELAISH--YLMAINLNEKN 48 (111)
Q Consensus 17 rlAEi~Yt~Gg~enl~~A~ky--f~~aleL~~~~ 48 (111)
-+|=..|.+| +++.|++. |..+..+.+.|
T Consensus 6 ~~a~~~y~~~---ky~~A~~~~~y~~l~~ld~~n 36 (36)
T PF07720_consen 6 GLAYNFYQKG---KYDEAIHFFQYAFLCALDKYN 36 (36)
T ss_dssp HHHHHHHHTT----HHHHHHHHHHHHHHHHTTT-
T ss_pred HHHHHHHHHh---hHHHHHHHHHHHHHHHhcccC
Confidence 4688899999 99999999 55887777654
No 132
>KOG4162|consensus
Probab=71.00 E-value=12 Score=34.51 Aligned_cols=61 Identities=18% Similarity=0.111 Sum_probs=51.2
Q ss_pred cchhcCCCCHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhccCCCchHHHHhHHHHHHHHHh
Q psy14212 3 ELFLHHPHNHLLHQRYADILYTQGGLENIELAISHYLMAINLNEKNIRALYGLALSCHQVLT 64 (111)
Q Consensus 3 EvlL~~P~n~~~h~rlAEi~Yt~Gg~enl~~A~kyf~~aleL~~~~lRalyGL~l~~~~l~~ 64 (111)
+.+.++|.+.....-+||++--.| ...++..+..-.-+++++|.|--|||+|=.+..+..+
T Consensus 709 ~Al~ldP~hv~s~~Ala~~lle~G-~~~la~~~~~L~dalr~dp~n~eaW~~LG~v~k~~Gd 769 (799)
T KOG4162|consen 709 VALALDPDHVPSMTALAELLLELG-SPRLAEKRSLLSDALRLDPLNHEAWYYLGEVFKKLGD 769 (799)
T ss_pred HHHhcCCCCcHHHHHHHHHHHHhC-CcchHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHccc
Confidence 357789999999999999876555 6678888889999999999999999999888765543
No 133
>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A.
Probab=69.90 E-value=10 Score=23.06 Aligned_cols=30 Identities=23% Similarity=0.121 Sum_probs=23.1
Q ss_pred HHHHHhcCCcccHHHHHHHHHHHhccCCCchHH
Q psy14212 19 ADILYTQGGLENIELAISHYLMAINLNEKNIRA 51 (111)
Q Consensus 19 AEi~Yt~Gg~enl~~A~kyf~~aleL~~~~lRa 51 (111)
|=-+|-+| ++..|++|--..+++.|+|.=|
T Consensus 8 Aig~ykl~---~Y~~A~~~~~~lL~~eP~N~Qa 37 (53)
T PF14853_consen 8 AIGHYKLG---EYEKARRYCDALLEIEPDNRQA 37 (53)
T ss_dssp HHHHHHTT----HHHHHHHHHHHHHHTTS-HHH
T ss_pred HHHHHHhh---hHHHHHHHHHHHHhhCCCcHHH
Confidence 33457777 9999999999999999998754
No 134
>KOG0624|consensus
Probab=68.78 E-value=6.4 Score=33.78 Aligned_cols=44 Identities=23% Similarity=0.408 Sum_probs=31.6
Q ss_pred CCCCHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhccCCCchHHHHh
Q psy14212 8 HPHNHLLHQRYADILYTQGGLENIELAISHYLMAINLNEKNIRALYG 54 (111)
Q Consensus 8 ~P~n~~~h~rlAEi~Yt~Gg~enl~~A~kyf~~aleL~~~~lRalyG 54 (111)
+|.+.--|.-+|--+...| .+..|..+|-.|||++|+|--|+|-
T Consensus 34 ~~advekhlElGk~lla~~---Q~sDALt~yHaAve~dp~~Y~aifr 77 (504)
T KOG0624|consen 34 SPADVEKHLELGKELLARG---QLSDALTHYHAAVEGDPNNYQAIFR 77 (504)
T ss_pred CHHHHHHHHHHHHHHHHhh---hHHHHHHHHHHHHcCCchhHHHHHH
Confidence 3445555666776666666 6778888888888888887777774
No 135
>PF13226 DUF4034: Domain of unknown function (DUF4034)
Probab=68.29 E-value=17 Score=29.32 Aligned_cols=58 Identities=17% Similarity=0.168 Sum_probs=48.4
Q ss_pred hcCCCCHHHHHHHHHHHHhcC------C-------------cccHHHHHHHHHHHhccCCCchHHHHhHHHHHHHHH
Q psy14212 6 LHHPHNHLLHQRYADILYTQG------G-------------LENIELAISHYLMAINLNEKNIRALYGLALSCHQVL 63 (111)
Q Consensus 6 L~~P~n~~~h~rlAEi~Yt~G------g-------------~enl~~A~kyf~~aleL~~~~lRalyGL~l~~~~l~ 63 (111)
-..|+++.-|...|...+..+ | -+-.+.|..+|.+|++|+|+-+=|.-+++-.+..+.
T Consensus 71 ~a~P~Sy~A~La~g~~~~~~Aw~~RG~~~A~~V~~~~W~~~~~~~d~A~~~ll~A~~l~pr~~~A~~~m~~~s~~fg 147 (277)
T PF13226_consen 71 AACPKSYHAHLAMGMYWVHRAWDIRGSGYASTVTEAQWLGAHQACDQAVAALLKAIELSPRPVAAAIGMINISAYFG 147 (277)
T ss_pred HHCCCChHHHHHHHHHHHHHHHHHHccchhcccCHHHHHHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHhhcC
Confidence 457999999999999988874 1 114788999999999999999999999998887644
No 136
>KOG0495|consensus
Probab=67.78 E-value=7.3 Score=35.79 Aligned_cols=49 Identities=27% Similarity=0.266 Sum_probs=44.9
Q ss_pred CccchhcCCCCHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhccCCCchHHH
Q psy14212 1 MEELFLHHPHNHLLHQRYADILYTQGGLENIELAISHYLMAINLNEKNIRAL 52 (111)
Q Consensus 1 ~EEvlL~~P~n~~~h~rlAEi~Yt~Gg~enl~~A~kyf~~aleL~~~~lRal 52 (111)
+||+|-+-|+-|-++..+|.|+-.++ +++.||.-|.+-++.||+.+--|
T Consensus 674 lEe~lk~fp~f~Kl~lmlGQi~e~~~---~ie~aR~aY~~G~k~cP~~ipLW 722 (913)
T KOG0495|consen 674 LEEALKSFPDFHKLWLMLGQIEEQME---NIEMAREAYLQGTKKCPNSIPLW 722 (913)
T ss_pred HHHHHHhCCchHHHHHHHhHHHHHHH---HHHHHHHHHHhccccCCCCchHH
Confidence 48999999999999999999999998 99999999999999999877533
No 137
>PF04190 DUF410: Protein of unknown function (DUF410) ; InterPro: IPR007317 This is a family of conserved eukaryotic proteins with undetermined function.; PDB: 3LKU_E 2WPV_G.
Probab=67.34 E-value=6.5 Score=30.79 Aligned_cols=28 Identities=32% Similarity=0.504 Sum_probs=23.4
Q ss_pred CHHHHHHHHHHHHhcCCcccHHHHHHHHHHH
Q psy14212 11 NHLLHQRYADILYTQGGLENIELAISHYLMA 41 (111)
Q Consensus 11 n~~~h~rlAEi~Yt~Gg~enl~~A~kyf~~a 41 (111)
++-+|..+|++++.-| ++..|++||-.+
T Consensus 89 dp~LH~~~a~~~~~e~---~~~~A~~Hfl~~ 116 (260)
T PF04190_consen 89 DPELHHLLAEKLWKEG---NYYEAERHFLLG 116 (260)
T ss_dssp -HHHHHHHHHHHHHTT----HHHHHHHHHTS
T ss_pred CHHHHHHHHHHHHhhc---cHHHHHHHHHhc
Confidence 5789999999999988 899999999654
No 138
>KOG2002|consensus
Probab=66.88 E-value=6.3 Score=37.05 Aligned_cols=40 Identities=23% Similarity=0.375 Sum_probs=33.3
Q ss_pred HHHHHHHhcCCcccHHHHHHHHHHHhccCCCc-hHHHHhHHHHH
Q psy14212 17 RYADILYTQGGLENIELAISHYLMAINLNEKN-IRALYGLALSC 59 (111)
Q Consensus 17 rlAEi~Yt~Gg~enl~~A~kyf~~aleL~~~~-lRalyGL~l~~ 59 (111)
.+|-.++.+| |++.|.+||-+|+.-+|++ +=++|||-+.-
T Consensus 312 ~~gRs~Ha~G---d~ekA~~yY~~s~k~~~d~~~l~~~GlgQm~ 352 (1018)
T KOG2002|consen 312 QLGRSYHAQG---DFEKAFKYYMESLKADNDNFVLPLVGLGQMY 352 (1018)
T ss_pred HHHHHHHhhc---cHHHHHHHHHHHHccCCCCccccccchhHHH
Confidence 3466666667 9999999999999999988 99999987653
No 139
>KOG3024|consensus
Probab=66.76 E-value=7.3 Score=32.12 Aligned_cols=28 Identities=39% Similarity=0.581 Sum_probs=25.6
Q ss_pred CHHHHHHHHHHHHhcCCcccHHHHHHHHHHH
Q psy14212 11 NHLLHQRYADILYTQGGLENIELAISHYLMA 41 (111)
Q Consensus 11 n~~~h~rlAEi~Yt~Gg~enl~~A~kyf~~a 41 (111)
++-+|.-+|..++|-+ |++.|++||-++
T Consensus 126 ~p~lH~~la~~l~~e~---~~~~a~~HFll~ 153 (312)
T KOG3024|consen 126 HPELHALLADKLWTED---NVEEARRHFLLS 153 (312)
T ss_pred CHHHHHHHHHHHHhcc---cHHHHHhHhhhc
Confidence 5789999999999998 999999999765
No 140
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=66.51 E-value=5.5 Score=31.90 Aligned_cols=55 Identities=22% Similarity=0.249 Sum_probs=41.5
Q ss_pred cchhcCCCCHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhccCC--CchHHHHhHHHHHH
Q psy14212 3 ELFLHHPHNHLLHQRYADILYTQGGLENIELAISHYLMAINLNE--KNIRALYGLALSCH 60 (111)
Q Consensus 3 EvlL~~P~n~~~h~rlAEi~Yt~Gg~enl~~A~kyf~~aleL~~--~~lRalyGL~l~~~ 60 (111)
=.|-++|+|-.++.-||--++.+| ..+.|.++|.+|++.-. .-.+.|=-+-+|.-
T Consensus 94 kAlsl~p~~GdVLNNYG~FLC~qg---~~~eA~q~F~~Al~~P~Y~~~s~t~eN~G~Cal 150 (250)
T COG3063 94 KALSLAPNNGDVLNNYGAFLCAQG---RPEEAMQQFERALADPAYGEPSDTLENLGLCAL 150 (250)
T ss_pred HHHhcCCCccchhhhhhHHHHhCC---ChHHHHHHHHHHHhCCCCCCcchhhhhhHHHHh
Confidence 357789999999999999999999 78888888888887643 33344544455554
No 141
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=66.37 E-value=20 Score=29.26 Aligned_cols=52 Identities=10% Similarity=0.025 Sum_probs=36.7
Q ss_pred hhcCCCCHH-HHHHHHHHHHhcCCcccHHHHHHHHHHHhccCCCchHHHHhHHHHH
Q psy14212 5 FLHHPHNHL-LHQRYADILYTQGGLENIELAISHYLMAINLNEKNIRALYGLALSC 59 (111)
Q Consensus 5 lL~~P~n~~-~h~rlAEi~Yt~Gg~enl~~A~kyf~~aleL~~~~lRalyGL~l~~ 59 (111)
.-..|.+.. ....+|+++.-.| +++.|+..|.+.++..|++..+++=+..+.
T Consensus 145 ~~~~p~~~l~~~~~~a~l~l~~~---~~~~Al~~l~~l~~~~P~~~~~l~ll~~~~ 197 (409)
T TIGR00540 145 AELAGNDNILVEIARTRILLAQN---ELHAARHGVDKLLEMAPRHKEVLKLAEEAY 197 (409)
T ss_pred HHhCCcCchHHHHHHHHHHHHCC---CHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Confidence 334677754 5555688888887 788888888888888888876655444433
No 142
>KOG3824|consensus
Probab=65.66 E-value=6.4 Score=33.39 Aligned_cols=48 Identities=21% Similarity=0.207 Sum_probs=29.6
Q ss_pred ccchhcCCCCHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhccCCCchHHH
Q psy14212 2 EELFLHHPHNHLLHQRYADILYTQGGLENIELAISHYLMAINLNEKNIRAL 52 (111)
Q Consensus 2 EEvlL~~P~n~~~h~rlAEi~Yt~Gg~enl~~A~kyf~~aleL~~~~lRal 52 (111)
|..+-++|.++-...++|+..=.-. ++-+|-.+|-+|+-..|.|.-||
T Consensus 140 eHAlalaP~~p~~L~e~G~f~E~~~---~iv~ADq~Y~~ALtisP~nseAL 187 (472)
T KOG3824|consen 140 EHALALAPTNPQILIEMGQFREMHN---EIVEADQCYVKALTISPGNSEAL 187 (472)
T ss_pred HHHHhcCCCCHHHHHHHhHHHHhhh---hhHhhhhhhheeeeeCCCchHHH
Confidence 4455666666666666666655443 66666666666666666665554
No 143
>KOG1174|consensus
Probab=64.02 E-value=14 Score=32.30 Aligned_cols=54 Identities=22% Similarity=0.202 Sum_probs=45.7
Q ss_pred cchhcCCCCHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhccCCCchHH--HHhHHHHH
Q psy14212 3 ELFLHHPHNHLLHQRYADILYTQGGLENIELAISHYLMAINLNEKNIRA--LYGLALSC 59 (111)
Q Consensus 3 EvlL~~P~n~~~h~rlAEi~Yt~Gg~enl~~A~kyf~~aleL~~~~lRa--lyGL~l~~ 59 (111)
|..-.-|+|-...--+|.++|-+| +...|.-.|.++.-++|.++-| .||..+..
T Consensus 223 e~~~~lr~NvhLl~~lak~~~~~G---dn~~a~~~Fe~~~~~dpy~i~~MD~Ya~LL~~ 278 (564)
T KOG1174|consen 223 HDNTTLRCNEHLMMALGKCLYYNG---DYFQAEDIFSSTLCANPDNVEAMDLYAVLLGQ 278 (564)
T ss_pred HhhccCCccHHHHHHHhhhhhhhc---CchHHHHHHHHHhhCChhhhhhHHHHHHHHHh
Confidence 334456889889999999999999 7889999999999999998876 58887653
No 144
>COG5191 Uncharacterized conserved protein, contains HAT (Half-A-TPR) repeat [General function prediction only]
Probab=63.63 E-value=3.4 Score=34.90 Aligned_cols=51 Identities=22% Similarity=0.241 Sum_probs=35.7
Q ss_pred cchhcCCCCHHHHHHHHHHHHhc-CCcccHHHHHHHHHHHhccCCCchHHHHhHH
Q psy14212 3 ELFLHHPHNHLLHQRYADILYTQ-GGLENIELAISHYLMAINLNEKNIRALYGLA 56 (111)
Q Consensus 3 EvlL~~P~n~~~h~rlAEi~Yt~-Gg~enl~~A~kyf~~aleL~~~~lRalyGL~ 56 (111)
|++-..|+|.-+..-.+.--|.. | |++.||..|-+++.+||++.|-||--.
T Consensus 132 ~~l~khP~nvdlWI~~c~~e~~~~a---ni~s~Ra~f~~glR~N~~~p~iw~eyf 183 (435)
T COG5191 132 ECLTKHPLNVDLWIYCCAFELFEIA---NIESSRAMFLKGLRMNSRSPRIWIEYF 183 (435)
T ss_pred HHHhcCCCCceeeeeeccchhhhhc---cHHHHHHHHHhhhccCCCCchHHHHHH
Confidence 45566676643333322223333 4 999999999999999999999988753
No 145
>PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi. It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 [].
Probab=63.41 E-value=16 Score=31.70 Aligned_cols=49 Identities=33% Similarity=0.422 Sum_probs=39.9
Q ss_pred CHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhccCCCchHHHHhHHHHHHHHH
Q psy14212 11 NHLLHQRYADILYTQGGLENIELAISHYLMAINLNEKNIRALYGLALSCHQVL 63 (111)
Q Consensus 11 n~~~h~rlAEi~Yt~Gg~enl~~A~kyf~~aleL~~~~lRalyGL~l~~~~l~ 63 (111)
....+.|||.|++.=. +|+.+|+.|..+++.+|.. ..+.=+++++..++
T Consensus 58 ea~~~l~la~iL~~eT--~n~~~Ae~~L~k~~~l~~~--~~~~d~k~~~~~ll 106 (608)
T PF10345_consen 58 EARVRLRLASILLEET--ENLDLAETYLEKAILLCER--HRLTDLKFRCQFLL 106 (608)
T ss_pred HHHHHHHHHHHHHHHc--CCHHHHHHHHHHHHHhccc--cchHHHHHHHHHHH
Confidence 4568999999998654 5999999999999999987 66666667666655
No 146
>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production. It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.
Probab=63.06 E-value=10 Score=25.94 Aligned_cols=48 Identities=21% Similarity=0.128 Sum_probs=37.5
Q ss_pred HHHHHHHHHHhcCCcccHHHHHHHHHHHhccCCCchHHHHhHHHHHHHHHh
Q psy14212 14 LHQRYADILYTQGGLENIELAISHYLMAINLNEKNIRALYGLALSCHQVLT 64 (111)
Q Consensus 14 ~h~rlAEi~Yt~Gg~enl~~A~kyf~~aleL~~~~lRalyGL~l~~~~l~~ 64 (111)
...++++.+...| +.+.|.....+++.++|-+=+++.-+..+-....+
T Consensus 64 ~~~~l~~~~~~~~---~~~~a~~~~~~~l~~dP~~E~~~~~lm~~~~~~g~ 111 (146)
T PF03704_consen 64 ALERLAEALLEAG---DYEEALRLLQRALALDPYDEEAYRLLMRALAAQGR 111 (146)
T ss_dssp HHHHHHHHHHHTT----HHHHHHHHHHHHHHSTT-HHHHHHHHHHHHHTT-
T ss_pred HHHHHHHHHHhcc---CHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHCcC
Confidence 4578899999888 88999999999999999888888877777665554
No 147
>KOG0547|consensus
Probab=62.81 E-value=7.1 Score=34.60 Aligned_cols=43 Identities=28% Similarity=0.359 Sum_probs=32.3
Q ss_pred ccchhcCCCCHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhccCCC
Q psy14212 2 EELFLHHPHNHLLHQRYADILYTQGGLENIELAISHYLMAINLNEK 47 (111)
Q Consensus 2 EEvlL~~P~n~~~h~rlAEi~Yt~Gg~enl~~A~kyf~~aleL~~~ 47 (111)
||++.-=|+.+=.+.-+|||+--++ .+..|.|+|-.+|+|-|+
T Consensus 452 ee~kkkFP~~~Evy~~fAeiLtDqq---qFd~A~k~YD~ai~LE~~ 494 (606)
T KOG0547|consen 452 EEAKKKFPNCPEVYNLFAEILTDQQ---QFDKAVKQYDKAIELEPR 494 (606)
T ss_pred HHHHHhCCCCchHHHHHHHHHhhHH---hHHHHHHHHHHHHhhccc
Confidence 5666666666666666666666555 789999999999999986
No 148
>KOG1258|consensus
Probab=62.35 E-value=13 Score=33.10 Aligned_cols=44 Identities=18% Similarity=0.198 Sum_probs=35.6
Q ss_pred hcCCCCHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhccCCCchHHHH
Q psy14212 6 LHHPHNHLLHQRYADILYTQGGLENIELAISHYLMAINLNEKNIRALY 53 (111)
Q Consensus 6 L~~P~n~~~h~rlAEi~Yt~Gg~enl~~A~kyf~~aleL~~~~lRaly 53 (111)
..-|..+.|..+|||.-|=+| +++.|.+-|.++|.=-| ..+.+|
T Consensus 73 ~kyPl~~gyW~kfA~~E~klg---~~~~s~~Vfergv~aip-~SvdlW 116 (577)
T KOG1258|consen 73 SKYPLCYGYWKKFADYEYKLG---NAENSVKVFERGVQAIP-LSVDLW 116 (577)
T ss_pred hhCccHHHHHHHHHHHHHHhh---hHHHHHHHHHHHHHhhh-hHHHHH
Confidence 356999999999999999999 67888888888887666 444444
No 149
>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome. This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.
Probab=62.29 E-value=11 Score=27.88 Aligned_cols=31 Identities=23% Similarity=0.269 Sum_probs=28.0
Q ss_pred HHHHHHHHHHHhcCCcccHHHHHHHHHHHhccCC
Q psy14212 13 LLHQRYADILYTQGGLENIELAISHYLMAINLNE 46 (111)
Q Consensus 13 ~~h~rlAEi~Yt~Gg~enl~~A~kyf~~aleL~~ 46 (111)
--|..+|+-++-+| +++.|.+.|.++.+-|.
T Consensus 37 ~~~~~l~~~~~~~G---d~~~A~k~y~~~~~~~~ 67 (177)
T PF10602_consen 37 MALEDLADHYCKIG---DLEEALKAYSRARDYCT 67 (177)
T ss_pred HHHHHHHHHHHHhh---hHHHHHHHHHHHhhhcC
Confidence 35778999999999 99999999999999885
No 150
>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins. The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.
Probab=59.61 E-value=13 Score=29.10 Aligned_cols=46 Identities=9% Similarity=-0.068 Sum_probs=31.4
Q ss_pred cchhcCCCCHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhccCCCchH
Q psy14212 3 ELFLHHPHNHLLHQRYADILYTQGGLENIELAISHYLMAINLNEKNIR 50 (111)
Q Consensus 3 EvlL~~P~n~~~h~rlAEi~Yt~Gg~enl~~A~kyf~~aleL~~~~lR 50 (111)
+++...+.+|-++.++|.+-|..|+ |...|++-|.++++.-|++.-
T Consensus 26 ~a~~~~~~~~~vy~~~A~~E~~~~~--d~~~A~~Ife~glk~f~~~~~ 71 (280)
T PF05843_consen 26 RARKDKRCTYHVYVAYALMEYYCNK--DPKRARKIFERGLKKFPSDPD 71 (280)
T ss_dssp HHHCCCCS-THHHHHHHHHHHHTCS---HHHHHHHHHHHHHHHTT-HH
T ss_pred HHHcCCCCCHHHHHHHHHHHHHhCC--CHHHHHHHHHHHHHHCCCCHH
Confidence 3444556778888899999777654 667788888888887775543
No 151
>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins. The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.
Probab=59.24 E-value=20 Score=28.01 Aligned_cols=55 Identities=18% Similarity=0.201 Sum_probs=43.4
Q ss_pred ccchhcCCCCHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhccCCCc--hHHHHhHHHHH
Q psy14212 2 EELFLHHPHNHLLHQRYADILYTQGGLENIELAISHYLMAINLNEKN--IRALYGLALSC 59 (111)
Q Consensus 2 EEvlL~~P~n~~~h~rlAEi~Yt~Gg~enl~~A~kyf~~aleL~~~~--lRalyGL~l~~ 59 (111)
|-.+-.-|.+..+-..|.+-+-..| +...||..|.++|...+.. .+.+|--++--
T Consensus 60 e~glk~f~~~~~~~~~Y~~~l~~~~---d~~~aR~lfer~i~~l~~~~~~~~iw~~~i~f 116 (280)
T PF05843_consen 60 ERGLKKFPSDPDFWLEYLDFLIKLN---DINNARALFERAISSLPKEKQSKKIWKKFIEF 116 (280)
T ss_dssp HHHHHHHTT-HHHHHHHHHHHHHTT----HHHHHHHHHHHCCTSSCHHHCHHHHHHHHHH
T ss_pred HHHHHHCCCCHHHHHHHHHHHHHhC---cHHHHHHHHHHHHHhcCchhHHHHHHHHHHHH
Confidence 4556677999999999999998888 8999999999999998843 57777766544
No 152
>PF10373 EST1_DNA_bind: Est1 DNA/RNA binding domain; InterPro: IPR018834 Est1 is a protein which recruits or activates telomerase at the site of polymerisation [, ]. This is the DNA/RNA binding domain of EST1 []. ; PDB: 1YA0_B.
Probab=58.82 E-value=10 Score=28.45 Aligned_cols=56 Identities=16% Similarity=0.011 Sum_probs=39.2
Q ss_pred ccchhcCCCCHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhccCC-CchHHHHhHHHHHHH
Q psy14212 2 EELFLHHPHNHLLHQRYADILYTQGGLENIELAISHYLMAINLNE-KNIRALYGLALSCHQ 61 (111)
Q Consensus 2 EEvlL~~P~n~~~h~rlAEi~Yt~Gg~enl~~A~kyf~~aleL~~-~~lRalyGL~l~~~~ 61 (111)
..++.+.|.+-..|-.+|=+.-..| |.-.|.=||.||+ .+. -..-|.-.|...-.+
T Consensus 6 ~~A~~l~P~~G~p~nQLAvl~~~~~---~~l~avy~y~Rsl-~~~~Pf~~A~~NL~~lf~~ 62 (278)
T PF10373_consen 6 RKAIRLLPSNGNPYNQLAVLASYQG---DDLDAVYYYIRSL-AVRIPFPSARENLQKLFEK 62 (278)
T ss_dssp HHHHHH-TTBSHHHHHHHHHHHHTT----HHHHHHHHHHHH-SSSB--HHHHHHHHHHHHH
T ss_pred HHHHHhCCCCCCcccchhhhhcccc---chHHHHHHHHHHH-hcCCCcHHHHHHHHHHHHH
Confidence 3467889999999999999998887 8899999999999 443 233444444444443
No 153
>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=58.70 E-value=21 Score=28.64 Aligned_cols=51 Identities=22% Similarity=0.173 Sum_probs=39.8
Q ss_pred CHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhccCCCchHH---HHhHHHHHHHHHh
Q psy14212 11 NHLLHQRYADILYTQGGLENIELAISHYLMAINLNEKNIRA---LYGLALSCHQVLT 64 (111)
Q Consensus 11 n~~~h~rlAEi~Yt~Gg~enl~~A~kyf~~aleL~~~~lRa---lyGL~l~~~~l~~ 64 (111)
.++-|--|||.+|.+| +++.|-+.|..+++=.|+.-+| ++=|-+|-..+-+
T Consensus 177 ~~nA~yWLGe~~y~qg---~y~~Aa~~f~~~~k~~P~s~KApdallKlg~~~~~l~~ 230 (262)
T COG1729 177 TPNAYYWLGESLYAQG---DYEDAAYIFARVVKDYPKSPKAPDALLKLGVSLGRLGN 230 (262)
T ss_pred cchhHHHHHHHHHhcc---cchHHHHHHHHHHHhCCCCCCChHHHHHHHHHHHHhcC
Confidence 3455667899999999 9999999999999998876665 6666666554443
No 154
>PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models. The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding
Probab=58.32 E-value=15 Score=18.55 Aligned_cols=23 Identities=22% Similarity=0.108 Sum_probs=19.2
Q ss_pred HHHHHHHHHHhcCCcccHHHHHHHHH
Q psy14212 14 LHQRYADILYTQGGLENIELAISHYL 39 (111)
Q Consensus 14 ~h~rlAEi~Yt~Gg~enl~~A~kyf~ 39 (111)
.+.-+|++++-.| +++.|+..+-
T Consensus 3 a~~~la~~~~~~G---~~~eA~~~l~ 25 (26)
T PF07721_consen 3 ARLALARALLAQG---DPDEAERLLR 25 (26)
T ss_pred HHHHHHHHHHHcC---CHHHHHHHHh
Confidence 4677899999999 8899987764
No 155
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala. N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].
Probab=57.76 E-value=27 Score=30.40 Aligned_cols=45 Identities=24% Similarity=0.220 Sum_probs=39.9
Q ss_pred HHHHHHHHHHHHhcCCcccHHHHHHHHHHHhccCCCchHHHHhHHHHH
Q psy14212 12 HLLHQRYADILYTQGGLENIELAISHYLMAINLNEKNIRALYGLALSC 59 (111)
Q Consensus 12 ~~~h~rlAEi~Yt~Gg~enl~~A~kyf~~aleL~~~~lRalyGL~l~~ 59 (111)
..+.-+-|+++.-.| +.+.|.+.|-.-|+.||+|..-+.||..|.
T Consensus 38 ~~~~E~rA~ll~kLg---~~~eA~~~y~~Li~rNPdn~~Yy~~L~~~~ 82 (517)
T PF12569_consen 38 LAVLEKRAELLLKLG---RKEEAEKIYRELIDRNPDNYDYYRGLEEAL 82 (517)
T ss_pred HHHHHHHHHHHHHcC---CHHHHHHHHHHHHHHCCCcHHHHHHHHHHH
Confidence 345667799999999 899999999999999999999999988886
No 156
>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []. It is also involved in sporulation [].
Probab=57.60 E-value=56 Score=25.36 Aligned_cols=37 Identities=16% Similarity=0.200 Sum_probs=32.0
Q ss_pred CCCHHHHHHHHHHHHhcC----Ccc-cHHHHHHHHHHHhccC
Q psy14212 9 PHNHLLHQRYADILYTQG----GLE-NIELAISHYLMAINLN 45 (111)
Q Consensus 9 P~n~~~h~rlAEi~Yt~G----g~e-nl~~A~kyf~~aleL~ 45 (111)
..++....++|+++|..| ... +++.|.+...+|.+++
T Consensus 25 ~~~~~~~~~La~~~yn~G~~l~~~~~~~~~a~~wL~~a~~~l 66 (278)
T PF08631_consen 25 SLDPDMAEELARVCYNIGKSLLSKKDKYEEAVKWLQRAYDIL 66 (278)
T ss_pred cCCcHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHH
Confidence 567778899999999998 344 8999999999999995
No 157
>KOG2076|consensus
Probab=56.94 E-value=18 Score=33.81 Aligned_cols=49 Identities=29% Similarity=0.512 Sum_probs=42.8
Q ss_pred CccchhcCCCCHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhccCCCchHHHH
Q psy14212 1 MEELFLHHPHNHLLHQRYADILYTQGGLENIELAISHYLMAINLNEKNIRALY 53 (111)
Q Consensus 1 ~EEvlL~~P~n~~~h~rlAEi~Yt~Gg~enl~~A~kyf~~aleL~~~~lRaly 53 (111)
++|||-.+|.++.-+..||+|+=-.| +++.|..-+-.|--|+|++- .+|
T Consensus 162 ~~EvIkqdp~~~~ay~tL~~IyEqrG---d~eK~l~~~llAAHL~p~d~-e~W 210 (895)
T KOG2076|consen 162 LMEVIKQDPRNPIAYYTLGEIYEQRG---DIEKALNFWLLAAHLNPKDY-ELW 210 (895)
T ss_pred HHHHHHhCccchhhHHHHHHHHHHcc---cHHHHHHHHHHHHhcCCCCh-HHH
Confidence 36899999999999999999998888 99999999999999999775 444
No 158
>KOG1127|consensus
Probab=55.94 E-value=48 Score=31.90 Aligned_cols=42 Identities=14% Similarity=0.116 Sum_probs=37.7
Q ss_pred chhcCCCCHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhccCCCc
Q psy14212 4 LFLHHPHNHLLHQRYADILYTQGGLENIELAISHYLMAINLNEKN 48 (111)
Q Consensus 4 vlL~~P~n~~~h~rlAEi~Yt~Gg~enl~~A~kyf~~aleL~~~~ 48 (111)
.+-.+|.+.+.-.-+||.|-..| .+..|.|.|-+|..|+|..
T Consensus 588 ALR~dPkD~n~W~gLGeAY~~sG---ry~~AlKvF~kAs~LrP~s 629 (1238)
T KOG1127|consen 588 ALRTDPKDYNLWLGLGEAYPESG---RYSHALKVFTKASLLRPLS 629 (1238)
T ss_pred HhcCCchhHHHHHHHHHHHHhcC---ceehHHHhhhhhHhcCcHh
Confidence 35678999999999999999999 6889999999999999964
No 159
>KOG0548|consensus
Probab=55.61 E-value=30 Score=30.57 Aligned_cols=58 Identities=17% Similarity=0.135 Sum_probs=48.5
Q ss_pred cchhcCCCCHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhccCCCchHHHHhHHHHHHHHH
Q psy14212 3 ELFLHHPHNHLLHQRYADILYTQGGLENIELAISHYLMAINLNEKNIRALYGLALSCHQVL 63 (111)
Q Consensus 3 EvlL~~P~n~~~h~rlAEi~Yt~Gg~enl~~A~kyf~~aleL~~~~lRalyGL~l~~~~l~ 63 (111)
-+|-++|++.--+.|=|.+++.+- ++..|..-|--+++++|++.++.=|++-|...+.
T Consensus 417 ~~ieL~p~~~kgy~RKg~al~~mk---~ydkAleay~eale~dp~~~e~~~~~~rc~~a~~ 474 (539)
T KOG0548|consen 417 KCIELDPNFIKAYLRKGAALRAMK---EYDKALEAYQEALELDPSNAEAIDGYRRCVEAQR 474 (539)
T ss_pred HHHhcCchHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHhh
Confidence 345678888888888888888665 8899999999999999999999999998888764
No 160
>KOG1129|consensus
Probab=55.47 E-value=13 Score=31.78 Aligned_cols=45 Identities=20% Similarity=0.160 Sum_probs=37.0
Q ss_pred cchhcCCCCHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhccCCCchH
Q psy14212 3 ELFLHHPHNHLLHQRYADILYTQGGLENIELAISHYLMAINLNEKNIR 50 (111)
Q Consensus 3 EvlL~~P~n~~~h~rlAEi~Yt~Gg~enl~~A~kyf~~aleL~~~~lR 50 (111)
|.+-.-|.+.-+..-.|-|+=.+| +.+.|.++|-.++++.|.|+-
T Consensus 281 ~gld~fP~~VT~l~g~ARi~eam~---~~~~a~~lYk~vlk~~~~nvE 325 (478)
T KOG1129|consen 281 EGLDSFPFDVTYLLGQARIHEAME---QQEDALQLYKLVLKLHPINVE 325 (478)
T ss_pred hhhhcCCchhhhhhhhHHHHHHHH---hHHHHHHHHHHHHhcCCccce
Confidence 556677888888888888888887 888899999999999886543
No 161
>KOG4642|consensus
Probab=55.45 E-value=21 Score=29.09 Aligned_cols=56 Identities=16% Similarity=0.005 Sum_probs=46.3
Q ss_pred cchhcCCCCHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhccCCCchHHHHhHHHHHHH
Q psy14212 3 ELFLHHPHNHLLHQRYADILYTQGGLENIELAISHYLMAINLNEKNIRALYGLALSCHQ 61 (111)
Q Consensus 3 EvlL~~P~n~~~h~rlAEi~Yt~Gg~enl~~A~kyf~~aleL~~~~lRalyGL~l~~~~ 61 (111)
+.|.++|+..-|...=|+.+.-.- +++..---=-+|++|.|+-+-+.|||..+-..
T Consensus 35 raI~~nP~~~~Y~tnralchlk~~---~~~~v~~dcrralql~~N~vk~h~flg~~~l~ 90 (284)
T KOG4642|consen 35 RAICINPTVASYYTNRALCHLKLK---HWEPVEEDCRRALQLDPNLVKAHYFLGQWLLQ 90 (284)
T ss_pred HHHhcCCCcchhhhhHHHHHHHhh---hhhhhhhhHHHHHhcChHHHHHHHHHHHHHHh
Confidence 568899999988888888887643 67777666778999999999999999988764
No 162
>PF12688 TPR_5: Tetratrico peptide repeat
Probab=54.32 E-value=59 Score=22.66 Aligned_cols=48 Identities=25% Similarity=0.087 Sum_probs=37.5
Q ss_pred HHHHHHHHHhcCCcccHHHHHHHHHHHhccCC---CchHHHHhHHHHHHHHHhh
Q psy14212 15 HQRYADILYTQGGLENIELAISHYLMAINLNE---KNIRALYGLALSCHQVLTS 65 (111)
Q Consensus 15 h~rlAEi~Yt~Gg~enl~~A~kyf~~aleL~~---~~lRalyGL~l~~~~l~~~ 65 (111)
+-..|.++=+.| +-+.|+.+|-++++.-. .-.|++.|+-.+-..+.+.
T Consensus 4 ~~~~A~a~d~~G---~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~ 54 (120)
T PF12688_consen 4 LYELAWAHDSLG---REEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRY 54 (120)
T ss_pred HHHHHHHHHhcC---CHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCH
Confidence 445688888888 88999999999999754 3468999988887766543
No 163
>PF15349 DCA16: DDB1- and CUL4-associated factor 16
Probab=54.26 E-value=6.6 Score=29.81 Aligned_cols=14 Identities=29% Similarity=0.577 Sum_probs=12.2
Q ss_pred cCCCCHHHHHHHHH
Q psy14212 7 HHPHNHLLHQRYAD 20 (111)
Q Consensus 7 ~~P~n~~~h~rlAE 20 (111)
++|++|+||+|+-+
T Consensus 69 l~pnswlyhaklld 82 (216)
T PF15349_consen 69 LNPNSWLYHAKLLD 82 (216)
T ss_pred CCcchhhhHhhhcC
Confidence 68999999999854
No 164
>KOG4162|consensus
Probab=53.04 E-value=67 Score=29.80 Aligned_cols=57 Identities=25% Similarity=0.170 Sum_probs=41.9
Q ss_pred CccchhcCCCCHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhccCC-CchHHHHhHHHHHH
Q psy14212 1 MEELFLHHPHNHLLHQRYADILYTQGGLENIELAISHYLMAINLNE-KNIRALYGLALSCH 60 (111)
Q Consensus 1 ~EEvlL~~P~n~~~h~rlAEi~Yt~Gg~enl~~A~kyf~~aleL~~-~~lRalyGL~l~~~ 60 (111)
+||++-.+|+||+..-.+|==+--++ ++..|..|-.+++++++ +..-||-=|.+|-+
T Consensus 467 le~av~~d~~dp~~if~lalq~A~~R---~l~sAl~~~~eaL~l~~~~~~~~whLLALvlS 524 (799)
T KOG4162|consen 467 LEEAVQFDPTDPLVIFYLALQYAEQR---QLTSALDYAREALALNRGDSAKAWHLLALVLS 524 (799)
T ss_pred HHHHHhcCCCCchHHHHHHHHHHHHH---hHHHHHHHHHHHHHhcCCccHHHHHHHHHHHh
Confidence 58999999999977666553333334 89999999999999976 56666655555443
No 165
>PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function.
Probab=52.81 E-value=16 Score=27.89 Aligned_cols=30 Identities=17% Similarity=0.130 Sum_probs=24.3
Q ss_pred HHHHHHHHHHhcCCcccHHHHHHHHHHHhccCC
Q psy14212 14 LHQRYADILYTQGGLENIELAISHYLMAINLNE 46 (111)
Q Consensus 14 ~h~rlAEi~Yt~Gg~enl~~A~kyf~~aleL~~ 46 (111)
+.--+||+.+=.| |.+.|+++|++.|..-.
T Consensus 167 l~YLigeL~rrlg---~~~eA~~~fs~vi~~~~ 196 (214)
T PF09986_consen 167 LLYLIGELNRRLG---NYDEAKRWFSRVIGSKK 196 (214)
T ss_pred HHHHHHHHHHHhC---CHHHHHHHHHHHHcCCC
Confidence 3345788888888 99999999999887654
No 166
>KOG4056|consensus
Probab=52.61 E-value=20 Score=26.48 Aligned_cols=31 Identities=26% Similarity=0.238 Sum_probs=27.4
Q ss_pred HHHHHHHHhcCCcccHHHHHHHHHHHhccCCCch
Q psy14212 16 QRYADILYTQGGLENIELAISHYLMAINLNEKNI 49 (111)
Q Consensus 16 ~rlAEi~Yt~Gg~enl~~A~kyf~~aleL~~~~l 49 (111)
..+||-+.++| |.+.+-.||.-||-+||.-.
T Consensus 85 v~lGE~L~~qg---~~e~ga~h~~nAi~vcgqpa 115 (143)
T KOG4056|consen 85 VQLGEELLAQG---NEEEGAEHLANAIVVCGQPA 115 (143)
T ss_pred HHhHHHHHHcc---CHHHHHHHHHHHHhhcCCHH
Confidence 45799999999 99999999999999998643
No 167
>COG0457 NrfG FOG: TPR repeat [General function prediction only]
Probab=51.34 E-value=53 Score=20.88 Aligned_cols=30 Identities=30% Similarity=0.313 Sum_probs=15.0
Q ss_pred cHHHHHHHHHHHhccCCC-chHHHHhHHHHH
Q psy14212 30 NIELAISHYLMAINLNEK-NIRALYGLALSC 59 (111)
Q Consensus 30 nl~~A~kyf~~aleL~~~-~lRalyGL~l~~ 59 (111)
+...|.+++.++++..++ ...+++.+-.+.
T Consensus 182 ~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~ 212 (291)
T COG0457 182 RYEEALELLEKALKLNPDDDAEALLNLGLLY 212 (291)
T ss_pred CHHHHHHHHHHHHhhCcccchHHHHHhhHHH
Confidence 455555555555555555 344444444443
No 168
>KOG1128|consensus
Probab=48.92 E-value=33 Score=31.60 Aligned_cols=59 Identities=17% Similarity=0.231 Sum_probs=47.2
Q ss_pred CCCCHHHHHHHHHHH--------------HhcCC-----------cccHHHHHHHHHHHhccCCCchHHHHhHHHHHHHH
Q psy14212 8 HPHNHLLHQRYADIL--------------YTQGG-----------LENIELAISHYLMAINLNEKNIRALYGLALSCHQV 62 (111)
Q Consensus 8 ~P~n~~~h~rlAEi~--------------Yt~Gg-----------~enl~~A~kyf~~aleL~~~~lRalyGL~l~~~~l 62 (111)
.|+++..|.-+||+. |++++ ..+++.|.+||-+|+++||-.+-.|||+=-|.-++
T Consensus 453 k~~d~~lyc~LGDv~~d~s~yEkawElsn~~sarA~r~~~~~~~~~~~fs~~~~hle~sl~~nplq~~~wf~~G~~ALql 532 (777)
T KOG1128|consen 453 KDPDPRLYCLLGDVLHDPSLYEKAWELSNYISARAQRSLALLILSNKDFSEADKHLERSLEINPLQLGTWFGLGCAALQL 532 (777)
T ss_pred CCCcchhHHHhhhhccChHHHHHHHHHhhhhhHHHHHhhccccccchhHHHHHHHHHHHhhcCccchhHHHhccHHHHHH
Confidence 488888888888874 34443 23899999999999999999999999998888777
Q ss_pred Hhhh
Q psy14212 63 LTSA 66 (111)
Q Consensus 63 ~~~~ 66 (111)
.+-.
T Consensus 533 ek~q 536 (777)
T KOG1128|consen 533 EKEQ 536 (777)
T ss_pred hhhH
Confidence 6543
No 169
>KOG1840|consensus
Probab=48.47 E-value=58 Score=28.46 Aligned_cols=37 Identities=27% Similarity=0.289 Sum_probs=32.8
Q ss_pred CCCCHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhccCCC
Q psy14212 8 HPHNHLLHQRYADILYTQGGLENIELAISHYLMAINLNEK 47 (111)
Q Consensus 8 ~P~n~~~h~rlAEi~Yt~Gg~enl~~A~kyf~~aleL~~~ 47 (111)
+|+-...|..||..+|-.| .++.|+-|+.+|+++-..
T Consensus 279 h~~va~~l~nLa~ly~~~G---Kf~EA~~~~e~Al~I~~~ 315 (508)
T KOG1840|consen 279 HPAVAATLNNLAVLYYKQG---KFAEAEEYCERALEIYEK 315 (508)
T ss_pred CHHHHHHHHHHHHHHhccC---ChHHHHHHHHHHHHHHHH
Confidence 5667788999999999999 999999999999998765
No 170
>KOG2758|consensus
Probab=47.44 E-value=23 Score=30.10 Aligned_cols=38 Identities=26% Similarity=0.356 Sum_probs=28.9
Q ss_pred HHHHHHHHHhcCCcccHHHH--HHHHHHHhccCC--CchHHHHhH
Q psy14212 15 HQRYADILYTQGGLENIELA--ISHYLMAINLNE--KNIRALYGL 55 (111)
Q Consensus 15 h~rlAEi~Yt~Gg~enl~~A--~kyf~~aleL~~--~~lRalyGL 55 (111)
.-+||--.|-.| |+..| .=||+|++--++ +++-|+||=
T Consensus 132 lykyakfqyeCG---NY~gAs~yLY~~r~l~~~~d~n~lsalwGK 173 (432)
T KOG2758|consen 132 LYKYAKFQYECG---NYSGASDYLYFYRALVSDPDRNYLSALWGK 173 (432)
T ss_pred HHHHHHHHHhcc---CcccHHHHHHHHHHhcCCcchhhHHHHHHH
Confidence 347888889888 65554 458899887665 699999994
No 171
>KOG1840|consensus
Probab=47.02 E-value=21 Score=31.15 Aligned_cols=35 Identities=17% Similarity=0.153 Sum_probs=30.3
Q ss_pred CCCHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhccCC
Q psy14212 9 PHNHLLHQRYADILYTQGGLENIELAISHYLMAINLNE 46 (111)
Q Consensus 9 P~n~~~h~rlAEi~Yt~Gg~enl~~A~kyf~~aleL~~ 46 (111)
|+=.-+..+||+++|++| .+..|+.+|-.||...-
T Consensus 364 ~~~a~~~~nl~~l~~~~g---k~~ea~~~~k~ai~~~~ 398 (508)
T KOG1840|consen 364 VNLAKIYANLAELYLKMG---KYKEAEELYKKAIQILR 398 (508)
T ss_pred hHHHHHHHHHHHHHHHhc---chhHHHHHHHHHHHHHH
Confidence 344568899999999999 99999999999998873
No 172
>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases. Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding
Probab=46.95 E-value=20 Score=27.60 Aligned_cols=49 Identities=27% Similarity=0.209 Sum_probs=35.4
Q ss_pred ccchhcCCCCHHHHHHHHHHHHhcC--------------CcccHHHHHHHHHHHhccCCCchH
Q psy14212 2 EELFLHHPHNHLLHQRYADILYTQG--------------GLENIELAISHYLMAINLNEKNIR 50 (111)
Q Consensus 2 EEvlL~~P~n~~~h~rlAEi~Yt~G--------------g~enl~~A~kyf~~aleL~~~~lR 50 (111)
.+++-.+|+..-.+..+|..+...- ..+.+..|+++|.+|+.+++++.|
T Consensus 282 ~~a~~~~~~~~k~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~ai~~y~~al~~~~~~~~ 344 (352)
T PF02259_consen 282 KEATKLDPSWEKAWHSWALFNDKLLESDPREKEESSQEDRSEYLEQAIEGYLKALSLGSKYVR 344 (352)
T ss_pred HHHHHhChhHHHHHHHHHHHHHHHHHhhhhcccccchhHHHHHHHHHHHHHHHHHhhCCCchH
Confidence 4566678877777777777766651 123567799999999999998543
No 173
>KOG1125|consensus
Probab=46.42 E-value=33 Score=30.57 Aligned_cols=44 Identities=9% Similarity=0.163 Sum_probs=39.4
Q ss_pred hcCC--CCHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhccCCCchHHH
Q psy14212 6 LHHP--HNHLLHQRYADILYTQGGLENIELAISHYLMAINLNEKNIRAL 52 (111)
Q Consensus 6 L~~P--~n~~~h~rlAEi~Yt~Gg~enl~~A~kyf~~aleL~~~~lRal 52 (111)
-.+| -++-++.-||=++|+.| .+..|+.-|-.||..+|+|-+-|
T Consensus 422 ~~~~~~~DpdvQ~~LGVLy~ls~---efdraiDcf~~AL~v~Pnd~~lW 467 (579)
T KOG1125|consen 422 RQLPTKIDPDVQSGLGVLYNLSG---EFDRAVDCFEAALQVKPNDYLLW 467 (579)
T ss_pred HhCCCCCChhHHhhhHHHHhcch---HHHHHHHHHHHHHhcCCchHHHH
Confidence 3466 78899999999999999 99999999999999999887766
No 174
>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional
Probab=46.35 E-value=35 Score=31.95 Aligned_cols=45 Identities=11% Similarity=0.050 Sum_probs=37.1
Q ss_pred hhcCCCCHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhccCCCchHHH
Q psy14212 5 FLHHPHNHLLHQRYADILYTQGGLENIELAISHYLMAINLNEKNIRAL 52 (111)
Q Consensus 5 lL~~P~n~~~h~rlAEi~Yt~Gg~enl~~A~kyf~~aleL~~~~lRal 52 (111)
|+.-|+|-..+..+|++|=.+| +...|...|-++|+++|+|.=++
T Consensus 109 i~~~~~~k~Al~~LA~~Ydk~g---~~~ka~~~yer~L~~D~~n~~aL 153 (906)
T PRK14720 109 ILLYGENKLALRTLAEAYAKLN---ENKKLKGVWERLVKADRDNPEIV 153 (906)
T ss_pred HHhhhhhhHHHHHHHHHHHHcC---ChHHHHHHHHHHHhcCcccHHHH
Confidence 4556777788888999888888 78999999999999999877544
No 175
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A.
Probab=45.90 E-value=21 Score=27.73 Aligned_cols=31 Identities=35% Similarity=0.355 Sum_probs=24.0
Q ss_pred HHHHHHHHHHHhc-CCcccHHHHHHHHHHHhccCC
Q psy14212 13 LLHQRYADILYTQ-GGLENIELAISHYLMAINLNE 46 (111)
Q Consensus 13 ~~h~rlAEi~Yt~-Gg~enl~~A~kyf~~aleL~~ 46 (111)
..+.++|+++-.. | +++.|+++|-+|+++-.
T Consensus 115 ~~~~~lA~~ye~~~~---d~e~Ai~~Y~~A~~~y~ 146 (282)
T PF14938_consen 115 KCLKELAEIYEEQLG---DYEKAIEYYQKAAELYE 146 (282)
T ss_dssp HHHHHHHHHHCCTT-----HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcC---CHHHHHHHHHHHHHHHH
Confidence 4677888888877 5 89999999999999854
No 176
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=45.72 E-value=41 Score=26.48 Aligned_cols=37 Identities=14% Similarity=0.033 Sum_probs=30.9
Q ss_pred CCHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhccCCCch
Q psy14212 10 HNHLLHQRYADILYTQGGLENIELAISHYLMAINLNEKNI 49 (111)
Q Consensus 10 ~n~~~h~rlAEi~Yt~Gg~enl~~A~kyf~~aleL~~~~l 49 (111)
..+-...++|.+++-.| +...|+++|.+.++.-|+.-
T Consensus 215 ~~~dAl~klg~~~~~~g---~~~~A~~~~~~vi~~yP~s~ 251 (263)
T PRK10803 215 KAADAMFKVGVIMQDKG---DTAKAKAVYQQVIKKYPGTD 251 (263)
T ss_pred chhHHHHHHHHHHHHcC---CHHHHHHHHHHHHHHCcCCH
Confidence 35666777899998888 99999999999999988643
No 177
>cd08806 CARD_CARD14_CARMA2 Caspase activation and recruitment domain of CARD14-like proteins. Caspase activation and recruitment domain (CARD) similar to that found in CARD14, also known as BIMP2 or CARMA2 (caspase recruitment domain-containing membrane-associated guanylate kinase protein 2). CARD14 has been identified as a novel member of the MAGUK (membrane-associated guanylate kinase) family that functions as upstream activators of BCL10 (B-cell lymphoma 10) and NF-kB signaling. In general, CARDs are death domains (DDs) found associated with caspases. They are known to be important in the signaling pathways for apoptosis, inflammation, and host-defense mechanisms. DDs are protein-protein interaction domains found in a variety of domain architectures. Their common feature is that they form homodimers by self-association or heterodimers by associating with other members of the DD superfamily including PYRIN and DED (Death Effector Domain). They serve as adaptors in signaling pathways
Probab=45.08 E-value=27 Score=23.72 Aligned_cols=39 Identities=28% Similarity=0.394 Sum_probs=33.7
Q ss_pred ccchhcCCCCHHHHHH---HHHHHHhcCCcccHHHHHHHHHHHhccC
Q psy14212 2 EELFLHHPHNHLLHQR---YADILYTQGGLENIELAISHYLMAINLN 45 (111)
Q Consensus 2 EEvlL~~P~n~~~h~r---lAEi~Yt~Gg~enl~~A~kyf~~aleL~ 45 (111)
||-++.+|+-.+=-.| +=+|+=|.| ..|...|-.|+|+.
T Consensus 36 eeeIls~~t~~~r~~k~g~LLDIL~trG-----~~g~~aFLeSLe~~ 77 (86)
T cd08806 36 EEEVLHSPRLTNRAMRVGHLLDLLKTRG-----KNGAIAFLESLKFH 77 (86)
T ss_pred HHHHHccchHHHHHHHHHHHHHHHHhcC-----chHHHHHHHHHHHH
Confidence 7888999998887777 999999999 78889999998854
No 178
>KOG1070|consensus
Probab=43.87 E-value=2.4e+02 Score=28.42 Aligned_cols=41 Identities=24% Similarity=0.229 Sum_probs=31.4
Q ss_pred ccchhcCCCCHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhccC
Q psy14212 2 EELFLHHPHNHLLHQRYADILYTQGGLENIELAISHYLMAINLN 45 (111)
Q Consensus 2 EEvlL~~P~n~~~h~rlAEi~Yt~Gg~enl~~A~kyf~~aleL~ 45 (111)
|=+++.+||+.+...+|=--..-.+ .++.||+-+.+|+.--
T Consensus 1448 erlvrssPNSSi~WI~YMaf~Lels---EiekAR~iaerAL~tI 1488 (1710)
T KOG1070|consen 1448 ERLVRSSPNSSILWIRYMAFHLELS---EIEKARKIAERALKTI 1488 (1710)
T ss_pred HHHHhcCCCcchHHHHHHHHHhhhh---hhHHHHHHHHHHhhhC
Confidence 3467889999988877654444445 8999999999998754
No 179
>KOG4234|consensus
Probab=43.67 E-value=25 Score=28.16 Aligned_cols=17 Identities=29% Similarity=0.210 Sum_probs=11.0
Q ss_pred cHHHHHHHHHHHhccCC
Q psy14212 30 NIELAISHYLMAINLNE 46 (111)
Q Consensus 30 nl~~A~kyf~~aleL~~ 46 (111)
+++.|-+-|..||++||
T Consensus 110 dyeeA~skY~~Ale~cp 126 (271)
T KOG4234|consen 110 DYEEANSKYQEALESCP 126 (271)
T ss_pred cHHHHHHHHHHHHHhCc
Confidence 56666666666666666
No 180
>KOG2002|consensus
Probab=42.37 E-value=3.2e+02 Score=26.26 Aligned_cols=53 Identities=23% Similarity=0.259 Sum_probs=45.5
Q ss_pred CCHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhccCCCchHHHHhHHHHHHHHHhh
Q psy14212 10 HNHLLHQRYADILYTQGGLENIELAISHYLMAINLNEKNIRALYGLALSCHQVLTS 65 (111)
Q Consensus 10 ~n~~~h~rlAEi~Yt~Gg~enl~~A~kyf~~aleL~~~~lRalyGL~l~~~~l~~~ 65 (111)
+++-+...||.++|-.| .+..|+.+-..|+.+.|.|.=-.|-+-++..++..+
T Consensus 714 ~~~~vl~~Lara~y~~~---~~~eak~~ll~a~~~~p~~~~v~FN~a~v~kkla~s 766 (1018)
T KOG2002|consen 714 NRSEVLHYLARAWYEAG---KLQEAKEALLKARHLAPSNTSVKFNLALVLKKLAES 766 (1018)
T ss_pred CCHHHHHHHHHHHHHhh---hHHHHHHHHHHHHHhCCccchHHhHHHHHHHHHHHH
Confidence 45667788999999999 599999999999999999988888888887777654
No 181
>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production. It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.
Probab=42.27 E-value=1.1e+02 Score=20.75 Aligned_cols=36 Identities=17% Similarity=0.083 Sum_probs=28.2
Q ss_pred cchhcCCCCHHHHHHHHHHHHhcCCcccHHHHHHHHHHH
Q psy14212 3 ELFLHHPHNHLLHQRYADILYTQGGLENIELAISHYLMA 41 (111)
Q Consensus 3 EvlL~~P~n~~~h~rlAEi~Yt~Gg~enl~~A~kyf~~a 41 (111)
.++-.+|.|--.|..+-.+++.+| +...|+++|.+.
T Consensus 87 ~~l~~dP~~E~~~~~lm~~~~~~g---~~~~A~~~Y~~~ 122 (146)
T PF03704_consen 87 RALALDPYDEEAYRLLMRALAAQG---RRAEALRVYERY 122 (146)
T ss_dssp HHHHHSTT-HHHHHHHHHHHHHTT----HHHHHHHHHHH
T ss_pred HHHhcCCCCHHHHHHHHHHHHHCc---CHHHHHHHHHHH
Confidence 456788999999999999999998 788888888753
No 182
>KOG0495|consensus
Probab=42.25 E-value=38 Score=31.39 Aligned_cols=44 Identities=18% Similarity=0.190 Sum_probs=35.1
Q ss_pred CCCHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhccCCCchHHHHhH
Q psy14212 9 PHNHLLHQRYADILYTQGGLENIELAISHYLMAINLNEKNIRALYGL 55 (111)
Q Consensus 9 P~n~~~h~rlAEi~Yt~Gg~enl~~A~kyf~~aleL~~~~lRalyGL 55 (111)
-|||......|-..|+-- -++.||+.|-|||+.||+|==+|-=+
T Consensus 814 e~dphVllaia~lfw~e~---k~~kar~Wf~Ravk~d~d~GD~wa~f 857 (913)
T KOG0495|consen 814 EHDPHVLLAIAKLFWSEK---KIEKAREWFERAVKKDPDNGDAWAWF 857 (913)
T ss_pred cCCchhHHHHHHHHHHHH---HHHHHHHHHHHHHccCCccchHHHHH
Confidence 366777777888888776 78999999999999999876665333
No 183
>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]
Probab=41.59 E-value=50 Score=28.24 Aligned_cols=48 Identities=19% Similarity=0.151 Sum_probs=39.6
Q ss_pred ccchhcCCCCHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhccCCC-chHHH
Q psy14212 2 EELFLHHPHNHLLHQRYADILYTQGGLENIELAISHYLMAINLNEK-NIRAL 52 (111)
Q Consensus 2 EEvlL~~P~n~~~h~rlAEi~Yt~Gg~enl~~A~kyf~~aleL~~~-~lRal 52 (111)
|.-+--.|.++..+..+|-+++-.+ .+..|..||-.|+++.|+ +-+++
T Consensus 318 e~~l~~h~~~p~L~~tLG~L~~k~~---~w~kA~~~leaAl~~~~s~~~~~~ 366 (400)
T COG3071 318 EKWLKQHPEDPLLLSTLGRLALKNK---LWGKASEALEAALKLRPSASDYAE 366 (400)
T ss_pred HHHHHhCCCChhHHHHHHHHHHHhh---HHHHHHHHHHHHHhcCCChhhHHH
Confidence 4455668999999999999999877 899999999999999984 44443
No 184
>PF11626 Rap1_C: TRF2-interacting telomeric protein/Rap1 - C terminal domain; InterPro: IPR021661 This family of proteins represents the C-terminal domain of the protein Rap-1, which plays a distinct role in silencing at the silent mating-type loci and telomeres []. The Rap-1 C terminus adopts an all-helical fold. Rap1 carries out its function by recruiting the Sir3 and Sir4 proteins to chromatin via its C-terminal domain []. ; PDB: 3K6G_C 3CZ6_A 3OWT_A.
Probab=41.52 E-value=21 Score=23.45 Aligned_cols=29 Identities=24% Similarity=0.322 Sum_probs=19.4
Q ss_pred HHhcCCcccHHHHHHHHHHHhccC---CCchHHHH
Q psy14212 22 LYTQGGLENIELAISHYLMAINLN---EKNIRALY 53 (111)
Q Consensus 22 ~Yt~Gg~enl~~A~kyf~~aleL~---~~~lRaly 53 (111)
+.|.| ++..|.+++...+.-. |.|+++.|
T Consensus 19 ~~tSg---d~~~a~~~vl~~l~~g~~~P~n~~GiW 50 (87)
T PF11626_consen 19 YATSG---DPELARRFVLNFLQAGKGIPDNMPGIW 50 (87)
T ss_dssp HHTTT---BHHHHHHHHHHCHCHTTSS-TT-TT--
T ss_pred HHhCC---CHHHHHHHHHHHHHcCCCCCCCCCCCc
Confidence 45566 8999999998888765 56777666
No 185
>PF08424 NRDE-2: NRDE-2, necessary for RNA interference; InterPro: IPR013633 This is domain is found in eukaryotic proteins of unknown function.
Probab=39.73 E-value=1e+02 Score=24.67 Aligned_cols=64 Identities=17% Similarity=0.061 Sum_probs=49.8
Q ss_pred ccchhcCCCCHHHHHHHHHHHHhcCC---------cccHHHHHHHHHHHhccCCCchHHHHhHHHHHHHHHhh
Q psy14212 2 EELFLHHPHNHLLHQRYADILYTQGG---------LENIELAISHYLMAINLNEKNIRALYGLALSCHQVLTS 65 (111)
Q Consensus 2 EEvlL~~P~n~~~h~rlAEi~Yt~Gg---------~enl~~A~kyf~~aleL~~~~lRalyGL~l~~~~l~~~ 65 (111)
++.+--+|+|.-.-.+|++..-+.-. ....+.-+..|.+||+-||++.|=+.|..-++.++-..
T Consensus 9 ~~~v~~~P~di~~Wl~li~~Qd~~~~~~~~~~~~~~a~~E~klsilerAL~~np~~~~L~l~~l~~~~~~~~~ 81 (321)
T PF08424_consen 9 NRRVRENPHDIEAWLELIEFQDELFRLQSSSKAERRALAERKLSILERALKHNPDSERLLLGYLEEGEKVWDS 81 (321)
T ss_pred HHHHHhCcccHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCH
Confidence 45667789988888888877766631 11356778899999999999999999999888877643
No 186
>PF11846 DUF3366: Domain of unknown function (DUF3366); InterPro: IPR021797 This domain is functionally uncharacterised. This domain is found in bacteria. This presumed domain is about 200 amino acids in length.
Probab=39.40 E-value=60 Score=23.58 Aligned_cols=41 Identities=32% Similarity=0.261 Sum_probs=32.8
Q ss_pred ccchhcCCCCHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhccCC
Q psy14212 2 EELFLHHPHNHLLHQRYADILYTQGGLENIELAISHYLMAINLNE 46 (111)
Q Consensus 2 EEvlL~~P~n~~~h~rlAEi~Yt~Gg~enl~~A~kyf~~aleL~~ 46 (111)
|+++...| +++.+.+++.+++-.| +-+.|+....++..+=|
T Consensus 135 ~~~l~~~P-~~~~~~~~a~~l~~~G---~~~eA~~~~~~~~~lyP 175 (193)
T PF11846_consen 135 ERLLRRRP-DPNVYQRYALALALLG---DPEEARQWLARARRLYP 175 (193)
T ss_pred HHHHHhCC-CHHHHHHHHHHHHHcC---CHHHHHHHHHHHHHhCC
Confidence 34555566 7788889999999999 88888888888887777
No 187
>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans. In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.
Probab=38.43 E-value=2.5e+02 Score=23.84 Aligned_cols=36 Identities=25% Similarity=0.277 Sum_probs=24.2
Q ss_pred hhcCCCCHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhc
Q psy14212 5 FLHHPHNHLLHQRYADILYTQGGLENIELAISHYLMAIN 43 (111)
Q Consensus 5 lL~~P~n~~~h~rlAEi~Yt~Gg~enl~~A~kyf~~ale 43 (111)
.-.-|++.++..--|-+.-..| |++.|+..|.++++
T Consensus 260 ~~~yP~s~lfl~~~gR~~~~~g---~~~~Ai~~~~~a~~ 295 (468)
T PF10300_consen 260 LKRYPNSALFLFFEGRLERLKG---NLEEAIESFERAIE 295 (468)
T ss_pred HHhCCCcHHHHHHHHHHHHHhc---CHHHHHHHHHHhcc
Confidence 3345777777777777777777 66666666666664
No 188
>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]
Probab=37.76 E-value=54 Score=26.09 Aligned_cols=47 Identities=26% Similarity=0.210 Sum_probs=38.6
Q ss_pred CHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhccCCC-chHHHHhHHHHHH
Q psy14212 11 NHLLHQRYADILYTQGGLENIELAISHYLMAINLNEK-NIRALYGLALSCH 60 (111)
Q Consensus 11 n~~~h~rlAEi~Yt~Gg~enl~~A~kyf~~aleL~~~-~lRalyGL~l~~~ 60 (111)
.+--|.-||-++-+.| ..+.|..-|..++.--|+ --|++||.++...
T Consensus 159 ~pd~~Ll~aR~laa~g---~~a~Aesafe~a~~~ypg~~ar~~Y~e~La~q 206 (251)
T COG4700 159 SPDGHLLFARTLAAQG---KYADAESAFEVAISYYPGPQARIYYAEMLAKQ 206 (251)
T ss_pred CCCchHHHHHHHHhcC---CchhHHHHHHHHHHhCCCHHHHHHHHHHHHHh
Confidence 3445677888998888 678899999999998885 6799999998874
No 189
>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]
Probab=34.82 E-value=57 Score=27.70 Aligned_cols=42 Identities=17% Similarity=0.161 Sum_probs=28.5
Q ss_pred CCHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhccCCCchHH
Q psy14212 10 HNHLLHQRYADILYTQGGLENIELAISHYLMAINLNEKNIRA 51 (111)
Q Consensus 10 ~n~~~h~rlAEi~Yt~Gg~enl~~A~kyf~~aleL~~~~lRa 51 (111)
++..+-+-|-|+.-..-..+|+..|+.-+.+|++-+|+++||
T Consensus 175 ~~~eIAqfyCELAq~~~~~~~~d~A~~~l~kAlqa~~~cvRA 216 (389)
T COG2956 175 YRVEIAQFYCELAQQALASSDVDRARELLKKALQADKKCVRA 216 (389)
T ss_pred chhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhhCccceeh
Confidence 344444555555544445667888888888888888888887
No 190
>PF09418 DUF2009: Protein of unknown function (DUF2009); InterPro: IPR018553 This is a eukaryotic family of proteins with unknown function.
Probab=34.67 E-value=1.1e+02 Score=26.60 Aligned_cols=29 Identities=21% Similarity=0.249 Sum_probs=20.0
Q ss_pred HHHHHHHHHHHHHHHhhcCChhHHHHHHh
Q psy14212 78 KQMMWVSKHLARQYEEQQGNTETLTELMS 106 (111)
Q Consensus 78 kL~~~A~~~L~~~Y~~~~~~~~~~~~~l~ 106 (111)
+--+.|.++|.+.|+...-.+..++..|-
T Consensus 177 k~KE~Aie~L~~kYss~~lskEdIe~cLy 205 (458)
T PF09418_consen 177 KQKERAIEELAKKYSSSGLSKEDIERCLY 205 (458)
T ss_pred HHHHHHHHHHHHHhhhccCCHHHHHHHHh
Confidence 56778999999999974333435555554
No 191
>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]
Probab=33.43 E-value=77 Score=25.78 Aligned_cols=40 Identities=20% Similarity=0.295 Sum_probs=29.4
Q ss_pred hhcCCCCHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhccCCC
Q psy14212 5 FLHHPHNHLLHQRYADILYTQGGLENIELAISHYLMAINLNEK 47 (111)
Q Consensus 5 lL~~P~n~~~h~rlAEi~Yt~Gg~enl~~A~kyf~~aleL~~~ 47 (111)
|-++|--+-.+.-+| |++|..| |+.-|..-|-..+||+|.
T Consensus 92 Lai~P~m~~vfNyLG-~Yl~~a~--~fdaa~eaFds~~ELDp~ 131 (297)
T COG4785 92 LAIRPDMPEVFNYLG-IYLTQAG--NFDAAYEAFDSVLELDPT 131 (297)
T ss_pred hhcCCCcHHHHHHHH-HHHHhcc--cchHHHHHhhhHhccCCc
Confidence 456666665555544 7777754 888999999999999984
No 192
>PF08928 DUF1910: Domain of unknown function (DUF1910); InterPro: IPR015024 This domain is found in hypothetical bacterial proteins.
Probab=33.25 E-value=1.5e+02 Score=19.87 Aligned_cols=46 Identities=15% Similarity=0.084 Sum_probs=33.3
Q ss_pred HHHHHHHHHHhcCC-----cccHHHHHHHHHHHhccCCCchHHHHhHHHHH
Q psy14212 14 LHQRYADILYTQGG-----LENIELAISHYLMAINLNEKNIRALYGLALSC 59 (111)
Q Consensus 14 ~h~rlAEi~Yt~Gg-----~enl~~A~kyf~~aleL~~~~lRalyGL~l~~ 59 (111)
+...+.-+.||+|. .+.+.....+|.+.-+.++.|..++|=+-+|.
T Consensus 51 ~~~~~l~~~YS~G~~i~~l~~~~~~~l~~~e~~~~~~~~Y~~~lwllsLgi 101 (117)
T PF08928_consen 51 YYLELLIAKYSAGDSIEELKPYYPNILDYFEEIWDENDGYIYMLWLLSLGI 101 (117)
T ss_pred HHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhccCCchHHHHHHHHHHHH
Confidence 44556778999995 23667788888887777777888888666554
No 193
>KOG4555|consensus
Probab=33.05 E-value=41 Score=25.36 Aligned_cols=22 Identities=18% Similarity=0.244 Sum_probs=19.1
Q ss_pred cHHHHHHHHHHHhccCCCchHH
Q psy14212 30 NIELAISHYLMAINLNEKNIRA 51 (111)
Q Consensus 30 nl~~A~kyf~~aleL~~~~lRa 51 (111)
++..|+..|-+||.++|.+.-|
T Consensus 58 ~Ld~AlE~F~qal~l~P~raSa 79 (175)
T KOG4555|consen 58 DLDGALELFGQALCLAPERASA 79 (175)
T ss_pred chHHHHHHHHHHHHhcccchHh
Confidence 8999999999999999965543
No 194
>PF12688 TPR_5: Tetratrico peptide repeat
Probab=32.98 E-value=74 Score=22.16 Aligned_cols=48 Identities=19% Similarity=0.153 Sum_probs=36.7
Q ss_pred CCCHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhccCCC-----chHHHHhHHHHH
Q psy14212 9 PHNHLLHQRYADILYTQGGLENIELAISHYLMAINLNEK-----NIRALYGLALSC 59 (111)
Q Consensus 9 P~n~~~h~rlAEi~Yt~Gg~enl~~A~kyf~~aleL~~~-----~lRalyGL~l~~ 59 (111)
|.-.-....+|-++-..| .++.|...+..+++--|+ -+|.++.+.+..
T Consensus 35 ~~~~~a~i~lastlr~LG---~~deA~~~L~~~~~~~p~~~~~~~l~~f~Al~L~~ 87 (120)
T PF12688_consen 35 ADRRRALIQLASTLRNLG---RYDEALALLEEALEEFPDDELNAALRVFLALALYN 87 (120)
T ss_pred hHHHHHHHHHHHHHHHcC---CHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHH
Confidence 333445678999999999 899999999999998775 566666665443
No 195
>PF12862 Apc5: Anaphase-promoting complex subunit 5
Probab=31.77 E-value=66 Score=20.86 Aligned_cols=29 Identities=24% Similarity=0.194 Sum_probs=25.0
Q ss_pred HHHHHHHHHhcCCcccHHHHHHHHHHHhccCC
Q psy14212 15 HQRYADILYTQGGLENIELAISHYLMAINLNE 46 (111)
Q Consensus 15 h~rlAEi~Yt~Gg~enl~~A~kyf~~aleL~~ 46 (111)
-..+|.+.+..| +.+.|.+.+..||++-.
T Consensus 44 ll~lA~~~~~~G---~~~~A~~~l~eAi~~Ar 72 (94)
T PF12862_consen 44 LLNLAELHRRFG---HYEEALQALEEAIRLAR 72 (94)
T ss_pred HHHHHHHHHHhC---CHHHHHHHHHHHHHHHH
Confidence 356899999999 89999999999998865
No 196
>KOG0543|consensus
Probab=30.90 E-value=80 Score=26.97 Aligned_cols=46 Identities=20% Similarity=0.204 Sum_probs=33.6
Q ss_pred HHHHHHHHHhcCCcccHHHHHHHHHHHhccCCCchHHHHhHHHHHHHHH
Q psy14212 15 HQRYADILYTQGGLENIELAISHYLMAINLNEKNIRALYGLALSCHQVL 63 (111)
Q Consensus 15 h~rlAEi~Yt~Gg~enl~~A~kyf~~aleL~~~~lRalyGL~l~~~~l~ 63 (111)
|+-+|=++--+. .+..|+++=.++|++.|+|.-|||===.+.-.+.
T Consensus 260 ~lNlA~c~lKl~---~~~~Ai~~c~kvLe~~~~N~KALyRrG~A~l~~~ 305 (397)
T KOG0543|consen 260 HLNLAACYLKLK---EYKEAIESCNKVLELDPNNVKALYRRGQALLALG 305 (397)
T ss_pred hhHHHHHHHhhh---hHHHHHHHHHHHHhcCCCchhHHHHHHHHHHhhc
Confidence 444555555555 6788999999999999999999995545544433
No 197
>PRK10941 hypothetical protein; Provisional
Probab=30.41 E-value=1.1e+02 Score=24.31 Aligned_cols=18 Identities=17% Similarity=0.313 Sum_probs=9.7
Q ss_pred cHHHHHHHHHHHhccCCC
Q psy14212 30 NIELAISHYLMAINLNEK 47 (111)
Q Consensus 30 nl~~A~kyf~~aleL~~~ 47 (111)
+++.|.+.-.+.+.+.|+
T Consensus 196 ~~~~AL~~~e~ll~l~P~ 213 (269)
T PRK10941 196 QMELALRASEALLQFDPE 213 (269)
T ss_pred cHHHHHHHHHHHHHhCCC
Confidence 555555555555555554
No 198
>KOG4234|consensus
Probab=30.40 E-value=56 Score=26.26 Aligned_cols=48 Identities=31% Similarity=0.324 Sum_probs=35.4
Q ss_pred cchhcCCCCHHHHHHHHHHHHhcCC-----cccHHHHHHHHHHHhccCCCchHHHH
Q psy14212 3 ELFLHHPHNHLLHQRYADILYTQGG-----LENIELAISHYLMAINLNEKNIRALY 53 (111)
Q Consensus 3 EvlL~~P~n~~~h~rlAEi~Yt~Gg-----~enl~~A~kyf~~aleL~~~~lRaly 53 (111)
|+|-+.|..+- ..--|+|+..+ ..-.+.|++--+.||+|+|.|.|||-
T Consensus 120 ~Ale~cp~~~~---e~rsIly~Nraaa~iKl~k~e~aI~dcsKaiel~pty~kAl~ 172 (271)
T KOG4234|consen 120 EALESCPSTST---EERSILYSNRAAALIKLRKWESAIEDCSKAIELNPTYEKALE 172 (271)
T ss_pred HHHHhCccccH---HHHHHHHhhhHHHHHHhhhHHHHHHHHHhhHhcCchhHHHHH
Confidence 44555555443 44567887754 33567899999999999999999986
No 199
>KOG0551|consensus
Probab=30.38 E-value=1.1e+02 Score=26.08 Aligned_cols=35 Identities=17% Similarity=0.150 Sum_probs=30.7
Q ss_pred cHHHHHHHHHHHhccCCCchHHHHhHHHHHHHHHh
Q psy14212 30 NIELAISHYLMAINLNEKNIRALYGLALSCHQVLT 64 (111)
Q Consensus 30 nl~~A~kyf~~aleL~~~~lRalyGL~l~~~~l~~ 64 (111)
|++.|++=-++++.++|+++.|.|-=-.|.-.|-.
T Consensus 134 NyRs~l~Dcs~al~~~P~h~Ka~~R~Akc~~eLe~ 168 (390)
T KOG0551|consen 134 NYRSALNDCSAALKLKPTHLKAYIRGAKCLLELER 168 (390)
T ss_pred HHHHHHHHHHHHHhcCcchhhhhhhhhHHHHHHHH
Confidence 99999999999999999999999987777766554
No 200
>KOG1156|consensus
Probab=29.88 E-value=1.1e+02 Score=28.00 Aligned_cols=41 Identities=27% Similarity=0.387 Sum_probs=34.2
Q ss_pred HHHHHhcCCcccHHHHHHHHHHHhccCCCchHHHHhHHHHHHHH
Q psy14212 19 ADILYTQGGLENIELAISHYLMAINLNEKNIRALYGLALSCHQV 62 (111)
Q Consensus 19 AEi~Yt~Gg~enl~~A~kyf~~aleL~~~~lRalyGL~l~~~~l 62 (111)
|+++.-.| +++.|.+-|..-++.||+|++=..|+..|-..+
T Consensus 226 a~l~~kl~---~lEeA~~~y~~Ll~rnPdn~~Yy~~l~~~lgk~ 266 (700)
T KOG1156|consen 226 ADLLMKLG---QLEEAVKVYRRLLERNPDNLDYYEGLEKALGKI 266 (700)
T ss_pred HHHHHHHh---hHHhHHHHHHHHHhhCchhHHHHHHHHHHHHHH
Confidence 66666556 899999999999999999999888888777533
No 201
>KOG0550|consensus
Probab=29.22 E-value=65 Score=28.13 Aligned_cols=46 Identities=20% Similarity=0.279 Sum_probs=33.9
Q ss_pred HHHHHHHhcCC----cccHHHHHHHHHHHhccCCCchHHHHhHHHHHHHHH
Q psy14212 17 RYADILYTQGG----LENIELAISHYLMAINLNEKNIRALYGLALSCHQVL 63 (111)
Q Consensus 17 rlAEi~Yt~Gg----~enl~~A~kyf~~aleL~~~~lRalyGL~l~~~~l~ 63 (111)
+.||-..-.|. ..++..|++.|..||++||++ =..||=...|-.++
T Consensus 47 ~~Ae~~k~~gn~~yk~k~Y~nal~~yt~Ai~~~pd~-a~yy~nRAa~~m~~ 96 (486)
T KOG0550|consen 47 QQAEEAKEEGNAFYKQKTYGNALKNYTFAIDMCPDN-ASYYSNRAATLMML 96 (486)
T ss_pred HHHHHHHhhcchHHHHhhHHHHHHHHHHHHHhCccc-hhhhchhHHHHHHH
Confidence 34555544442 338999999999999999999 67788777776554
No 202
>KOG4507|consensus
Probab=28.61 E-value=60 Score=29.87 Aligned_cols=41 Identities=17% Similarity=0.181 Sum_probs=30.5
Q ss_pred CCCCHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhccCCCchHH
Q psy14212 8 HPHNHLLHQRYADILYTQGGLENIELAISHYLMAINLNEKNIRA 51 (111)
Q Consensus 8 ~P~n~~~h~rlAEi~Yt~Gg~enl~~A~kyf~~aleL~~~~lRa 51 (111)
+-..+++|.-+|..+...- |+..|+.+|-+|++++|+|+-.
T Consensus 672 ~~sepl~~~~~g~~~l~l~---~i~~a~~~~~~a~~~~~~~~~~ 712 (886)
T KOG4507|consen 672 NSSEPLTFLSLGNAYLALK---NISGALEAFRQALKLTTKCPEC 712 (886)
T ss_pred cccCchHHHhcchhHHHHh---hhHHHHHHHHHHHhcCCCChhh
Confidence 3455666666666555444 8999999999999999987643
No 203
>PRK15338 type III secretion system regulator InvE; Provisional
Probab=28.31 E-value=43 Score=28.35 Aligned_cols=31 Identities=26% Similarity=0.264 Sum_probs=27.6
Q ss_pred cHHHHHHHHHHHhccCCCchHHHHhHHHHHH
Q psy14212 30 NIELAISHYLMAINLNEKNIRALYGLALSCH 60 (111)
Q Consensus 30 nl~~A~kyf~~aleL~~~~lRalyGL~l~~~ 60 (111)
|..+.-|.|++...++|..+|.+|==.+|..
T Consensus 167 NvAL~Ak~Fs~~~~lsa~~LR~lYR~Fl~~d 197 (372)
T PRK15338 167 NCALKARLFGKALSLKPGLLRASYRQFLQSE 197 (372)
T ss_pred cHHHHHHHHHhhcCCCHHHHHHHHHHHHhcc
Confidence 8899999999999999999999997766653
No 204
>cd02683 MIT_1 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in proteins with unknown function, co-occuring with an as yet undescribed domain. The molecular function of the MIT domain is unclear.
Probab=27.81 E-value=45 Score=21.56 Aligned_cols=15 Identities=27% Similarity=0.401 Sum_probs=12.5
Q ss_pred cHHHHHHHHHHHhcc
Q psy14212 30 NIELAISHYLMAINL 44 (111)
Q Consensus 30 nl~~A~kyf~~aleL 44 (111)
+++.|..+|..+|+.
T Consensus 21 ~y~eAl~~Y~~aie~ 35 (77)
T cd02683 21 RFQEALVCYQEGIDL 35 (77)
T ss_pred cHHHHHHHHHHHHHH
Confidence 888888888888874
No 205
>cd08807 CARD_CARD10_CARMA3 Caspase activation and recruitment domain of CARD10-like proteins. Caspase activation and recruitment domain (CARD) similar to that found in CARD10, also known as CARMA3 (caspase recruitment domain-containing membrane-associated guanylate kinase protein 3) or BIMP1. The CARMA3-BCL10-MALT1 signalosome plays a role in the GPCR-induced NF-kB activation. CARMA3 is more widely expressed than CARMA1, which is found only in hematopoietic cells. In endothelial and smooth muscle cells, CARMA3-mediated NF-kB activation induces pro-inflammatory signals within the vasculature and is a key factor in atherogenesis. In bronchial epithelial cells, CARMA3-mediated NF-kB signaling is important for the development of allergic airway inflammation. In general, CARDs are death domains (DDs) found associated with caspases. They are known to be important in the signaling pathways for apoptosis, inflammation, and host-defense mechanisms. DDs are protein-protein interaction domains fo
Probab=27.51 E-value=83 Score=21.40 Aligned_cols=38 Identities=26% Similarity=0.299 Sum_probs=29.5
Q ss_pred ccchhcCCC---CHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhcc
Q psy14212 2 EELFLHHPH---NHLLHQRYADILYTQGGLENIELAISHYLMAINL 44 (111)
Q Consensus 2 EEvlL~~P~---n~~~h~rlAEi~Yt~Gg~enl~~A~kyf~~aleL 44 (111)
||-++.+|. .-.=--++=+|+=|-| ..|...|-.|+|+
T Consensus 36 eEEI~~~~~~~~~~~k~~~LLDIL~trG-----~~gf~aFLeSLE~ 76 (86)
T cd08807 36 EEEVLNSYRFPCRINRTGRLMDILRGRG-----KRGYEAFLEALEF 76 (86)
T ss_pred HHHHHhccchhhHHHHHHHHHHHHHhcC-----chHHHHHHHHHHh
Confidence 677888888 5555556778889999 7788888888884
No 206
>KOG1129|consensus
Probab=27.35 E-value=25 Score=30.15 Aligned_cols=54 Identities=19% Similarity=0.251 Sum_probs=39.6
Q ss_pred cchhcCCCCHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhccCCCchHHHHhHHHHH
Q psy14212 3 ELFLHHPHNHLLHQRYADILYTQGGLENIELAISHYLMAINLNEKNIRALYGLALSC 59 (111)
Q Consensus 3 EvlL~~P~n~~~h~rlAEi~Yt~Gg~enl~~A~kyf~~aleL~~~~lRalyGL~l~~ 59 (111)
+|+-..|+|.--.+-+|-.+|=-| |-|.|..||-|.+.+--.+.--+--+-+||
T Consensus 315 ~vlk~~~~nvEaiAcia~~yfY~~---~PE~AlryYRRiLqmG~~speLf~NigLCC 368 (478)
T KOG1129|consen 315 LVLKLHPINVEAIACIAVGYFYDN---NPEMALRYYRRILQMGAQSPELFCNIGLCC 368 (478)
T ss_pred HHHhcCCccceeeeeeeeccccCC---ChHHHHHHHHHHHHhcCCChHHHhhHHHHH
Confidence 566677777666666666666555 889999999999999876666555566666
No 207
>KOG3824|consensus
Probab=27.28 E-value=1.3e+02 Score=25.70 Aligned_cols=43 Identities=23% Similarity=0.236 Sum_probs=34.0
Q ss_pred HHHHHHHHHHhcCCcccHHHHHHHHHHHhccCCCchHHH--HhHHHHH
Q psy14212 14 LHQRYADILYTQGGLENIELAISHYLMAINLNEKNIRAL--YGLALSC 59 (111)
Q Consensus 14 ~h~rlAEi~Yt~Gg~enl~~A~kyf~~aleL~~~~lRal--yGL~l~~ 59 (111)
.-++-|-=.|-.| +.+.|.+-|.+|+.|.|++.-+| ||.+.--
T Consensus 118 ~Al~~A~~~~~~G---k~ekA~~lfeHAlalaP~~p~~L~e~G~f~E~ 162 (472)
T KOG3824|consen 118 LALKAAGRSRKDG---KLEKAMTLFEHALALAPTNPQILIEMGQFREM 162 (472)
T ss_pred HHHHHHHHHHhcc---chHHHHHHHHHHHhcCCCCHHHHHHHhHHHHh
Confidence 3455566667777 89999999999999999999887 6766543
No 208
>PF08969 USP8_dimer: USP8 dimerisation domain; InterPro: IPR015063 This domain is predominantly found in the amino terminal region of Ubiquitin carboxyl-terminal hydrolase 8 (USP8). It has no known function. ; PDB: 2XZE_B 2A9U_A.
Probab=26.99 E-value=77 Score=21.49 Aligned_cols=25 Identities=24% Similarity=0.246 Sum_probs=17.4
Q ss_pred HHHHHHhcCCcccHHHHHHHHHHHhccC
Q psy14212 18 YADILYTQGGLENIELAISHYLMAINLN 45 (111)
Q Consensus 18 lAEi~Yt~Gg~enl~~A~kyf~~aleL~ 45 (111)
-|+++...| |.+.|..+|-|.+.|.
T Consensus 44 ~A~~~~~eg---d~E~AYvl~~R~~~L~ 68 (115)
T PF08969_consen 44 EAEEYRQEG---DEEQAYVLYMRYLTLV 68 (115)
T ss_dssp HHHHHHHCT----HHHHHHHHHHHHHHH
T ss_pred HHHHHHHCC---CHHHHHHHHHHHHHHH
Confidence 345555555 8999999999888765
No 209
>PHA01757 hypothetical protein
Probab=26.84 E-value=2e+02 Score=19.65 Aligned_cols=16 Identities=31% Similarity=0.370 Sum_probs=12.2
Q ss_pred HHHHhHHHHHHHHHhh
Q psy14212 50 RALYGLALSCHQVLTS 65 (111)
Q Consensus 50 RalyGL~l~~~~l~~~ 65 (111)
-||||.+-++..|...
T Consensus 8 ~al~gf~a~~g~l~~~ 23 (98)
T PHA01757 8 GALYGFFAVTGALSAS 23 (98)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 4799999888876643
No 210
>cd08809 CARD_CARD9 Caspase activation and recruitment domain of CARD9-like proteins. Caspase activation and recruitment domain (CARD) similar to that found in CARD9. CARD9 is a central regulator of innate immunity and is highly expressed in dendritic cells and macrophages. Together with BCL10 (B-cell lymphoma 10) and Malt1 (mucosa-associated lymphoid tissue-lymphoma-translocation gene 1), it forms the M-CBM signalosome (the CBM complex in myeloid immune cells), which mediates activation of NF-kB and MAPK by ITAM-coupled receptors expressed on immune cells. CARD9 associates with BCL10 via a CARD-CARD interaction. In general, CARDs are death domains (DDs) found associated with caspases. They are known to be important in the signaling pathways for apoptosis, inflammation, and host-defense mechanisms. DDs are protein-protein interaction domains found in a variety of domain architectures. Their common feature is that they form homodimers by self-association or heterodimers by associating wi
Probab=25.36 E-value=90 Score=21.24 Aligned_cols=39 Identities=26% Similarity=0.338 Sum_probs=29.2
Q ss_pred ccchhcCCCCHHHHH---HHHHHHHhcCCcccHHHHHHHHHHHhccC
Q psy14212 2 EELFLHHPHNHLLHQ---RYADILYTQGGLENIELAISHYLMAINLN 45 (111)
Q Consensus 2 EEvlL~~P~n~~~h~---rlAEi~Yt~Gg~enl~~A~kyf~~aleL~ 45 (111)
||-++.+|+=+.... +|=+|+=|-| ..|.+.|+.|+|+.
T Consensus 36 eEeI~~~~~~~~~~~kvg~LLDIL~~rG-----~~~f~aFLeSLE~~ 77 (86)
T cd08809 36 EEQVLNDPSLVIRKRKVGVLLDILQRTG-----LKGYEAFLESLELY 77 (86)
T ss_pred HHHHHcCcccchHHHHHHHHHHHHHhcC-----chHHHHHHHHHHHH
Confidence 677788866555555 4567888888 78999999999854
No 211
>PHA02537 M terminase endonuclease subunit; Provisional
Probab=25.25 E-value=1.2e+02 Score=23.85 Aligned_cols=20 Identities=35% Similarity=0.506 Sum_probs=17.2
Q ss_pred cccHHHHHHHHHHHhccCCC
Q psy14212 28 LENIELAISHYLMAINLNEK 47 (111)
Q Consensus 28 ~enl~~A~kyf~~aleL~~~ 47 (111)
.+++..|..++.+|++|||+
T Consensus 191 ~~~l~~Al~~L~rA~~l~~k 210 (230)
T PHA02537 191 AETLQLALALLQRAFQLNDK 210 (230)
T ss_pred cccHHHHHHHHHHHHHhCCC
Confidence 45788999999999999986
No 212
>PF08311 Mad3_BUB1_I: Mad3/BUB1 homology region 1; InterPro: IPR013212 Proteins containing this domain are checkpoint proteins involved in cell division. This region has been shown to be essential for the binding of BUB1 and MAD3 to CDC20p [].; PDB: 3ESL_B 4AEZ_I 4A1G_B 2LAH_A 2WVI_A 3SI5_B.
Probab=25.18 E-value=1.6e+02 Score=20.47 Aligned_cols=29 Identities=28% Similarity=0.413 Sum_probs=24.0
Q ss_pred CHHHHHHHHHHHHhcCCcccHHHHHHHHHHHh
Q psy14212 11 NHLLHQRYADILYTQGGLENIELAISHYLMAI 42 (111)
Q Consensus 11 n~~~h~rlAEi~Yt~Gg~enl~~A~kyf~~al 42 (111)
-..++..+|+++-..| ++..|.+.|-++|
T Consensus 98 ~A~fY~~wA~~le~~~---~~~~A~~I~~~Gi 126 (126)
T PF08311_consen 98 LALFYEEWAEFLEKRG---NFKKADEIYQLGI 126 (126)
T ss_dssp BHHHHHHHHHHHHHTT----HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcC---CHHHHHHHHHhhC
Confidence 4578889999999999 9999999998765
No 213
>KOG3617|consensus
Probab=25.05 E-value=2.9e+02 Score=26.84 Aligned_cols=91 Identities=15% Similarity=0.266 Sum_probs=55.1
Q ss_pred CCCHHHHHHHHHHHHhcCCcc---cHHHHHHHHHHHhccCC-CchHHHHhHHHHHHHHHhhh---hhh---hhhHHh-HH
Q psy14212 9 PHNHLLHQRYADILYTQGGLE---NIELAISHYLMAINLNE-KNIRALYGLALSCHQVLTSA---KCS---AAKKKE-IS 77 (111)
Q Consensus 9 P~n~~~h~rlAEi~Yt~Gg~e---nl~~A~kyf~~aleL~~-~~lRalyGL~l~~~~l~~~~---k~~---~~~~~e-~~ 77 (111)
-.++-+..|.||-.-..-..| |+-.+-++|..|+.||. .|+| +|..+...- |.+ .+..++ .+
T Consensus 1077 ~sDp~ll~RcadFF~~~~qyekAV~lL~~ar~~~~AlqlC~~~nv~-------vtee~aE~mTp~Kd~~~~e~~R~~vLe 1149 (1416)
T KOG3617|consen 1077 GSDPKLLRRCADFFENNQQYEKAVNLLCLAREFSGALQLCKNRNVR-------VTEEFAELMTPTKDDMPNEQERKQVLE 1149 (1416)
T ss_pred CCCHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhcCCCc-------hhHHHHHhcCcCcCCCccHHHHHHHHH
Confidence 367888999999877665222 44455678999999997 6776 455555432 211 112222 34
Q ss_pred HHHHHHHHH-----HHHHHHhhcCChh-HHHHHHhh
Q psy14212 78 KQMMWVSKH-----LARQYEEQQGNTE-TLTELMSA 107 (111)
Q Consensus 78 kL~~~A~~~-----L~~~Y~~~~~~~~-~~~~~l~~ 107 (111)
.+.+++.++ -.+.|-+ ..++. ++.++|++
T Consensus 1150 qvae~c~qQG~Yh~AtKKfTQ-AGdKl~AMraLLKS 1184 (1416)
T KOG3617|consen 1150 QVAELCLQQGAYHAATKKFTQ-AGDKLSAMRALLKS 1184 (1416)
T ss_pred HHHHHHHhccchHHHHHHHhh-hhhHHHHHHHHHhc
Confidence 666666665 4455554 33444 78888875
No 214
>PF10952 DUF2753: Protein of unknown function (DUF2753); InterPro: IPR020206 This entry represents a group of uncharacterised proteins.
Probab=24.60 E-value=2.9e+02 Score=20.34 Aligned_cols=80 Identities=23% Similarity=0.326 Sum_probs=53.6
Q ss_pred HHHHHHHHHHhcCCcccHHHHHHHHHHHhccCC-------CchHHHHhHHH-HHHHHHhhhhhhhhhHHhHHHHHHHHHH
Q psy14212 14 LHQRYADILYTQGGLENIELAISHYLMAINLNE-------KNIRALYGLAL-SCHQVLTSAKCSAAKKKEISKQMMWVSK 85 (111)
Q Consensus 14 ~h~rlAEi~Yt~Gg~enl~~A~kyf~~aleL~~-------~~lRalyGL~l-~~~~l~~~~k~~~~~~~e~~kL~~~A~~ 85 (111)
-|.-+||.....| +.-.|+-+|-+|+.+.. ..++-+--++. +|-+|..-=+.-++.+-|. |..++|.+
T Consensus 3 ~htllAd~a~~~~---~~l~si~hYQqAls~se~~~~~~~~el~dll~i~VisCHNLA~FWR~~gd~~yEL-kYLqlASE 78 (140)
T PF10952_consen 3 KHTLLADQAFKEA---DPLRSILHYQQALSLSEEIDESNEIELEDLLTISVISCHNLADFWRSQGDSDYEL-KYLQLASE 78 (140)
T ss_pred hHHHHHHHHhhcc---cHHHHHHHHHHHHHHHHHhcccccccHHHHHHHHHHHHhhHHHHHHHcCChHHHH-HHHHHHHH
Confidence 3677899999888 89999999999998765 23444444443 3344554334334444444 89999999
Q ss_pred HHHHHHHhhcCCh
Q psy14212 86 HLARQYEEQQGNT 98 (111)
Q Consensus 86 ~L~~~Y~~~~~~~ 98 (111)
++....-+ +|+.
T Consensus 79 ~VltLiPQ-Cp~~ 90 (140)
T PF10952_consen 79 KVLTLIPQ-CPNT 90 (140)
T ss_pred HHHHhccC-CCCc
Confidence 98877654 5553
No 215
>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]
Probab=24.13 E-value=1e+02 Score=24.57 Aligned_cols=48 Identities=27% Similarity=0.322 Sum_probs=33.2
Q ss_pred hhcCCCCHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhccC-CCchHHHHhHH
Q psy14212 5 FLHHPHNHLLHQRYADILYTQGGLENIELAISHYLMAINLN-EKNIRALYGLA 56 (111)
Q Consensus 5 lL~~P~n~~~h~rlAEi~Yt~Gg~enl~~A~kyf~~aleL~-~~~lRalyGL~ 56 (111)
+-..|++-+ |.|+|+-+--.| +..+|+.+|.+|+.=- -++.--+.|+-
T Consensus 83 ~~~ApTvqn-r~rLa~al~elG---r~~EA~~hy~qalsG~fA~d~a~lLglA 131 (251)
T COG4700 83 LAIAPTVQN-RYRLANALAELG---RYHEAVPHYQQALSGIFAHDAAMLLGLA 131 (251)
T ss_pred HhhchhHHH-HHHHHHHHHHhh---hhhhhHHHHHHHhccccCCCHHHHHHHH
Confidence 345666654 678999999899 8999999999997522 23443444443
No 216
>KOG0550|consensus
Probab=24.09 E-value=1.9e+02 Score=25.31 Aligned_cols=44 Identities=20% Similarity=0.206 Sum_probs=34.8
Q ss_pred HHHHHhcCCcccHHHHHHHHHHHhccCCC----chHHHHhHHHHHHHHHhh
Q psy14212 19 ADILYTQGGLENIELAISHYLMAINLNEK----NIRALYGLALSCHQVLTS 65 (111)
Q Consensus 19 AEi~Yt~Gg~enl~~A~kyf~~aleL~~~----~lRalyGL~l~~~~l~~~ 65 (111)
|+-.|-.| |+..|..-|..+|.++|+ |.--+|+..++..+|...
T Consensus 256 gN~~fk~G---~y~~A~E~Yteal~idP~n~~~naklY~nra~v~~rLgrl 303 (486)
T KOG0550|consen 256 GNDAFKNG---NYRKAYECYTEALNIDPSNKKTNAKLYGNRALVNIRLGRL 303 (486)
T ss_pred hhhHhhcc---chhHHHHHHHHhhcCCccccchhHHHHHHhHhhhcccCCc
Confidence 45566667 999999999999999995 556778888887776654
No 217
>cd02684 MIT_2 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in proteins with an n-terminal serine/threonine kinase domain. The molecular function of the MIT domain is unclear.
Probab=23.78 E-value=50 Score=21.20 Aligned_cols=15 Identities=27% Similarity=0.368 Sum_probs=11.4
Q ss_pred cHHHHHHHHHHHhcc
Q psy14212 30 NIELAISHYLMAINL 44 (111)
Q Consensus 30 nl~~A~kyf~~aleL 44 (111)
+++.|...|+++|+.
T Consensus 21 ~y~eA~~lY~~ale~ 35 (75)
T cd02684 21 DAAAALSLYCSALQY 35 (75)
T ss_pred cHHHHHHHHHHHHHH
Confidence 777788888777764
No 218
>cd08776 DED_Caspase-like_repeat1 Death effector domain, repeat 1, of initator caspase-like proteins. Death Effector Domain (DED), first repeat, found in initator caspase-like proteins, like caspase-8 and -10 and c-FLIP. Caspases are aspartate-specific cysteine proteases with functions in apoptosis and immune signaling. Initiator caspases are the first to be activated following death- or inflammation-inducing signals. Caspase-8 and -10 are the initiators of death receptor mediated apoptosis. Together with FADD and the pseudo-caspase c-FLIP, they form the death-inducing signaling complex (DISC), whose formation is triggered by the activation of type 1 tumor necrosis factor (TNF) receptors such as Fas, TNF receptor 1, and TRAIL receptor. Caspase-8 and -10 also play important functions in cell adhesion and motility. c-FLIP is a catalytically inactive homolog of the initator procaspases-8 and -10. It negatively influences apoptotic signaling by interfering with the efficient formation of DI
Probab=23.10 E-value=63 Score=20.95 Aligned_cols=20 Identities=30% Similarity=0.350 Sum_probs=14.7
Q ss_pred HHHHHHHHhcCCcccHHHHHHHH
Q psy14212 16 QRYADILYTQGGLENIELAISHY 38 (111)
Q Consensus 16 ~rlAEi~Yt~Gg~enl~~A~kyf 38 (111)
--++|++|.+| ...+.+++|
T Consensus 52 ~fL~ElL~~I~---R~DLL~~~~ 71 (71)
T cd08776 52 PLLAECLYRAG---RRDLLRSLL 71 (71)
T ss_pred HHHHHHHHHhC---HHHHHHHhC
Confidence 45899999999 666666553
No 219
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala. N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].
Probab=22.88 E-value=1.2e+02 Score=26.40 Aligned_cols=42 Identities=24% Similarity=0.170 Sum_probs=33.4
Q ss_pred ccchhcCCCCHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhccCC
Q psy14212 2 EELFLHHPHNHLLHQRYADILYTQGGLENIELAISHYLMAINLNE 46 (111)
Q Consensus 2 EEvlL~~P~n~~~h~rlAEi~Yt~Gg~enl~~A~kyf~~aleL~~ 46 (111)
+++|-|.|+.+=+|..=|.|+==+| ++..|-.....|-+|+.
T Consensus 218 d~aI~htPt~~ely~~KarilKh~G---~~~~Aa~~~~~Ar~LD~ 259 (517)
T PF12569_consen 218 DKAIEHTPTLVELYMTKARILKHAG---DLKEAAEAMDEARELDL 259 (517)
T ss_pred HHHHhcCCCcHHHHHHHHHHHHHCC---CHHHHHHHHHHHHhCCh
Confidence 5678888888888888888888888 88888887776666664
No 220
>KOG2047|consensus
Probab=22.80 E-value=1.8e+02 Score=27.08 Aligned_cols=48 Identities=17% Similarity=0.189 Sum_probs=0.0
Q ss_pred CCCHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhccCC-CchHHHHhHH
Q psy14212 9 PHNHLLHQRYADILYTQGGLENIELAISHYLMAINLNE-KNIRALYGLA 56 (111)
Q Consensus 9 P~n~~~h~rlAEi~Yt~Gg~enl~~A~kyf~~aleL~~-~~lRalyGL~ 56 (111)
|+-.-+-..|=+.--..=|-.-++.||--|.||++.|| .+.+-+|=++
T Consensus 544 p~v~diW~tYLtkfi~rygg~klEraRdLFEqaL~~Cpp~~aKtiyLlY 592 (835)
T KOG2047|consen 544 PNVYDIWNTYLTKFIKRYGGTKLERARDLFEQALDGCPPEHAKTIYLLY 592 (835)
T ss_pred ccHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
No 221
>PF09797 NatB_MDM20: N-acetyltransferase B complex (NatB) non catalytic subunit; InterPro: IPR019183 This is the non-catalytic subunit of the N-terminal acetyltransferase B complex (NatB). The NatB complex catalyses the acetylation of the amino-terminal methionine residue of all proteins beginning with Met-Asp or Met-Glu and of some proteins beginning with Met-Asn or Met-Met. In Saccharomyces cerevisiae (Baker's yeast) this subunit is called MDM20 and in Schizosaccharomyces pombe (Fission yeast) it is called Arm1. NatB acetylates the Tpm1 protein and regulates and tropomyocin-actin interactions. This subunit is required by the NatB complex for the N-terminal acetylation of Tpm1 [].
Probab=21.87 E-value=1.2e+02 Score=24.33 Aligned_cols=35 Identities=29% Similarity=0.413 Sum_probs=28.4
Q ss_pred CccchhcCCCCHHHHHHHHHHHHhcCCcccHHHHHHHH
Q psy14212 1 MEELFLHHPHNHLLHQRYADILYTQGGLENIELAISHY 38 (111)
Q Consensus 1 ~EEvlL~~P~n~~~h~rlAEi~Yt~Gg~enl~~A~kyf 38 (111)
+|.++-..|+|+-+...+.-+|--.| ..+.|.++|
T Consensus 206 LE~~l~~s~~n~~~~LlLvrlY~~LG---~~~~A~~~~ 240 (365)
T PF09797_consen 206 LEHALKKSPHNYQLKLLLVRLYSLLG---AGSLALEHY 240 (365)
T ss_pred HHHHHHcCCCcHHHHHHHHHHHHHcC---CHHHHHHHH
Confidence 47788889999999999999998888 456666666
No 222
>cd02678 MIT_VPS4 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in intracellular protein transport proteins of the AAA-ATPase family. The molecular function of the MIT domain is unclear.
Probab=21.53 E-value=74 Score=20.05 Aligned_cols=16 Identities=31% Similarity=0.312 Sum_probs=13.5
Q ss_pred cHHHHHHHHHHHhccC
Q psy14212 30 NIELAISHYLMAINLN 45 (111)
Q Consensus 30 nl~~A~kyf~~aleL~ 45 (111)
++..|..+|.++|+..
T Consensus 21 ~y~eA~~~Y~~aie~l 36 (75)
T cd02678 21 NYEEALRLYQHALEYF 36 (75)
T ss_pred CHHHHHHHHHHHHHHH
Confidence 8889999999988864
No 223
>PF04212 MIT: MIT (microtubule interacting and transport) domain; InterPro: IPR007330 The MIT domain is found in vacuolar sorting proteins, spastin (probable ATPase involved in the assembly or function of nuclear protein complexes), and a sorting nexin, which may play a role in intracellular trafficking.; PDB: 2DL1_A 2JQK_A 1WR0_A 2CPT_A 2JQH_A 2V6Y_A 2JQ9_A 2K3W_A 1YXR_A 3EAB_E ....
Probab=21.04 E-value=75 Score=19.41 Aligned_cols=15 Identities=40% Similarity=0.410 Sum_probs=13.2
Q ss_pred cHHHHHHHHHHHhcc
Q psy14212 30 NIELAISHYLMAINL 44 (111)
Q Consensus 30 nl~~A~kyf~~aleL 44 (111)
+++.|+.+|..+++.
T Consensus 20 ~~~~A~~~Y~~ai~~ 34 (69)
T PF04212_consen 20 NYEEALELYKEAIEY 34 (69)
T ss_dssp SHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHH
Confidence 899999999998874
No 224
>PF11817 Foie-gras_1: Foie gras liver health family 1; InterPro: IPR021773 Mutating the gene foie gras in zebrafish has been shown to affect development; the mutants develop large, lipid-filled hepatocytes in the liver, resembling those in individuals with fatty liver disease []. Foie-gras protein is long and has several well-defined domains though none of them has a known function. We have annotated this one as the first []. THe C terminus of this region contains TPR repeats.
Probab=20.20 E-value=1.4e+02 Score=22.84 Aligned_cols=25 Identities=20% Similarity=0.234 Sum_probs=22.1
Q ss_pred HHHHHHHHHHhcCCcccHHHHHHHHHHH
Q psy14212 14 LHQRYADILYTQGGLENIELAISHYLMA 41 (111)
Q Consensus 14 ~h~rlAEi~Yt~Gg~enl~~A~kyf~~a 41 (111)
+-..+|+.+|..| ++..|.++|..+
T Consensus 180 l~~~~A~ey~~~g---~~~~A~~~l~~~ 204 (247)
T PF11817_consen 180 LSLEMAEEYFRLG---DYDKALKLLEPA 204 (247)
T ss_pred HHHHHHHHHHHCC---CHHHHHHHHHHH
Confidence 3457899999999 999999999998
No 225
>cd08808 CARD_CARD11_CARMA1 Caspase activation and recruitment domain of CARD11-like proteins. Caspase activation and recruitment domain (CARD) similar to that found in CARD11, also known as caspase recruitment domain-containing membrane-associated guanylate kinase protein 1 (CARMA1). CARMA1, together with BCL10 (B-cell lymphoma 10) and Malt1 (mucosa-associated lymphoid tissue-lymphoma-translocation gene 1), form the L-CBM signalosome (CBM complex in lymphoid immune cells) which mediates activation of NF-kB and MAPK by ITAM-coupled receptors expressed on immune cells. CARMA1 associates with BCL10 via a CARD-CARD interaction. In general, CARDs are death domains (DDs) found associated with caspases. They are known to be important in the signaling pathways for apoptosis, inflammation, and host-defense mechanisms. DDs are protein-protein interaction domains found in a variety of domain architectures. Their common feature is that they form homodimers by self-association or heterodimers by as
Probab=20.02 E-value=1.3e+02 Score=20.39 Aligned_cols=39 Identities=26% Similarity=0.316 Sum_probs=29.2
Q ss_pred ccchhcCCCCHHHH---HHHHHHHHhcCCcccHHHHHHHHHHHhccC
Q psy14212 2 EELFLHHPHNHLLH---QRYADILYTQGGLENIELAISHYLMAINLN 45 (111)
Q Consensus 2 EEvlL~~P~n~~~h---~rlAEi~Yt~Gg~enl~~A~kyf~~aleL~ 45 (111)
||-++..|+=+... -++=+|+=|-| ..|...|-.|+|+.
T Consensus 36 eEeI~s~~~~~~~~~k~g~LLDIL~trG-----~~af~aFLeSLe~~ 77 (86)
T cd08808 36 EDEVLNSPMLPSKINRAGRLLDILHTKG-----QRGYVVFLESLEFY 77 (86)
T ss_pred HHHHHcCcccchHHHHHHHHHHHHHhcC-----chHHHHHHHHHHhh
Confidence 67788866444444 45668888889 78999999999854
Done!