RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy14212
(111 letters)
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 34.4 bits (78), Expect = 0.004
Identities = 18/121 (14%), Positives = 44/121 (36%), Gaps = 19/121 (15%)
Query: 7 HHPHNHL------LHQRYADIL--YTQGGLENIELA-ISHYLMAINLNEKNIRALYGLAL 57
HH H+H+ +Y DIL + ++N + + +I L+++ I +
Sbjct: 1 HHHHHHMDFETGEHQYQYKDILSVFEDAFVDNFDCKDVQDMPKSI-LSKEEIDHIIMSKD 59
Query: 58 SCHQVLTSAKCSAAKKKEISKQMM---------WVSKHLARQYEEQQGNTETLTELMSAL 108
+ L +K++E+ ++ + ++ + + + T E L
Sbjct: 60 AVSGTLRLFWTLLSKQEEMVQKFVEEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQRDRL 119
Query: 109 Q 109
Sbjct: 120 Y 120
Score = 30.2 bits (67), Expect = 0.12
Identities = 10/37 (27%), Positives = 17/37 (45%), Gaps = 4/37 (10%)
Query: 5 FLHHPHNHLLHQRYADILYTQGGLENIELAISHYLMA 41
FL +L+ +Y D+L + L + AI + A
Sbjct: 551 FLPKIEENLICSKYTDLL--RIALMAEDEAI--FEEA 583
>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C
biogenesis, O157:H7 EDL933, formate- nitrite reductase
complex, lyase; 2.05A {Escherichia coli}
Length = 177
Score = 32.5 bits (74), Expect = 0.012
Identities = 13/53 (24%), Positives = 18/53 (33%)
Query: 9 PHNHLLHQRYADILYTQGGLENIELAISHYLMAINLNEKNIRALYGLALSCHQ 61
N L+ A +LY Q + A+ L+ I AL LA
Sbjct: 75 GENAELYAALATVLYYQASQHMTAQTRAMIDKALALDSNEITALMLLASDAFM 127
>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide
repeat, TPR, chapero virulence; 2.15A {Shigella
flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A
Length = 151
Score = 32.1 bits (73), Expect = 0.019
Identities = 8/60 (13%), Positives = 19/60 (31%), Gaps = 3/60 (5%)
Query: 2 EELFLHHPHNHLLHQRYADILYTQGGLENIELAISHYLMAINLNEKNIRALYGLALSCHQ 61
L ++ +N A I + + A Y +A L + + ++ +
Sbjct: 60 RFLCIYDFYNVDYIMGLAAIYQIKE---QFQQAADLYAVAFALGKNDYTPVFHTGQCQLR 116
>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein
transport; 3.00A {Saccharomyces cerevisiae}
Length = 514
Score = 32.4 bits (74), Expect = 0.019
Identities = 12/68 (17%), Positives = 24/68 (35%), Gaps = 3/68 (4%)
Query: 8 HPHNHLLHQRYADILYTQGGLENIELAISHYLMAINLNEKNIRALYGLALSCHQVLTSAK 67
P + +A+IL + + + A+ Y +AI L K G+A + +
Sbjct: 368 FPEAPEVPNFFAEILTDKN---DFDKALKQYDLAIELENKLDGIYVGIAPLVGKATLLTR 424
Query: 68 CSAAKKKE 75
+
Sbjct: 425 NPTVENFI 432
Score = 28.9 bits (65), Expect = 0.27
Identities = 12/45 (26%), Positives = 19/45 (42%)
Query: 17 RYADILYTQGGLENIELAISHYLMAINLNEKNIRALYGLALSCHQ 61
A +L +EN A + A L+ ++ +A GLA Q
Sbjct: 417 GKATLLTRNPTVENFIEATNLLEKASKLDPRSEQAKIGLAQMKLQ 461
Score = 27.8 bits (62), Expect = 0.72
Identities = 5/51 (9%), Positives = 17/51 (33%), Gaps = 3/51 (5%)
Query: 11 NHLLHQRYADILYTQGGLENIELAISHYLMAINLNEKNIRALYGLALSCHQ 61
+ + + + + G +++ + A+ L + L A +
Sbjct: 38 DPVFYSNLSACYVSVG---DLKKVVEMSTKALELKPDYSKVLLRRASANEG 85
Score = 27.8 bits (62), Expect = 0.79
Identities = 6/49 (12%), Positives = 14/49 (28%), Gaps = 3/49 (6%)
Query: 8 HPHNHLLHQRYADILYTQGGLENIELAISHYLMAINLNEKNIRALYGLA 56
P N + + A + Y + + + + A + A
Sbjct: 334 DPENIFPYIQLACLAYREN---KFDDCETLFSEAKRKFPEAPEVPNFFA 379
Score = 27.4 bits (61), Expect = 0.88
Identities = 8/49 (16%), Positives = 17/49 (34%), Gaps = 3/49 (6%)
Query: 9 PHNHLLHQRYADILYTQGGLENIELAISHYLMAINLNEKNIRALYGLAL 57
P + A + Q +I+ AI+ + + +L L +
Sbjct: 446 PRSEQAKIGLAQMKLQQE---DIDEAITLFEESADLARTMEEKLQAITF 491
Score = 27.0 bits (60), Expect = 1.2
Identities = 12/48 (25%), Positives = 20/48 (41%), Gaps = 4/48 (8%)
Query: 14 LHQRYADILYTQG----GLENIELAISHYLMAINLNEKNIRALYGLAL 57
L + + Y +G L+N + A + A L+ +NI LA
Sbjct: 299 LDSNNSSVYYHRGQMNFILQNYDQAGKDFDKAKELDPENIFPYIQLAC 346
Score = 25.9 bits (57), Expect = 3.1
Identities = 6/54 (11%), Positives = 14/54 (25%), Gaps = 4/54 (7%)
Query: 8 HPHNHLLHQRYADILYTQGGLENIELAISHYLMAINLNEKNIRALYGLALSCHQ 61
+ + + + + A AI L + + +AL
Sbjct: 233 KEKLAISLEHTGIFKFLKN---DPLGAHEDIKKAIELF-PRVNSYIYMALIMAD 282
Score = 24.7 bits (54), Expect = 7.6
Identities = 10/36 (27%), Positives = 16/36 (44%), Gaps = 4/36 (11%)
Query: 18 YADILYTQG----GLENIELAISHYLMAINLNEKNI 49
YA L +G + + AI +Y A+ L E +
Sbjct: 5 YALALKDKGNQFFRNKKYDDAIKYYNWALELKEDPV 40
Score = 24.7 bits (54), Expect = 7.8
Identities = 7/51 (13%), Positives = 16/51 (31%), Gaps = 4/51 (7%)
Query: 8 HPHNHLLHQRYADILYTQGGLENIELAISHYLMAINLNEKNIRALYGLALS 58
P + A I+ + + +++ A+ L+ N Y
Sbjct: 267 FPRVNSYIYM-ALIMADRN---DSTEYYNYFDKALKLDSNNSSVYYHRGQM 313
>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR
protein, peroxin 5, PEX5, PTS1 binding domain,
protein-peptide complex, receptor; 2.00A {Trypanosoma
brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A
Length = 327
Score = 31.5 bits (72), Expect = 0.041
Identities = 11/53 (20%), Positives = 22/53 (41%), Gaps = 3/53 (5%)
Query: 9 PHNHLLHQRYADILYTQGGLENIELAISHYLMAINLNEKNIRALYGLALSCHQ 61
P + L + L + A+ Y A+++N +R +Y +A+S
Sbjct: 203 PDDAQLWNKLGATLANGN---RPQEALDAYNRALDINPGYVRVMYNMAVSYSN 252
Score = 29.2 bits (66), Expect = 0.24
Identities = 13/35 (37%), Positives = 16/35 (45%)
Query: 24 TQGGLENIELAISHYLMAINLNEKNIRALYGLALS 58
TQ E LAI A L+ K+I LA+S
Sbjct: 64 TQAENEKDGLAIIALNHARMLDPKDIAVHAALAVS 98
Score = 24.9 bits (55), Expect = 6.1
Identities = 4/29 (13%), Positives = 9/29 (31%)
Query: 28 LENIELAISHYLMAINLNEKNIRALYGLA 56
+ +LA + AI + +
Sbjct: 253 MSQYDLAAKQLVRAIYMQVGGTTPTGEAS 281
>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing
protein, structur genomics, joint center for structural
genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}
Length = 208
Score = 30.9 bits (70), Expect = 0.046
Identities = 8/51 (15%), Positives = 14/51 (27%), Gaps = 2/51 (3%)
Query: 8 HPHNHLLHQRYADILYTQGGLENIELAISHYLMAINLNEKNIRALYGLALS 58
N + + Y E + + ++ K A Y LS
Sbjct: 118 EADNLAANIFLGNYYYLTA--EQEKKKLETDYKKLSSPTKMQYARYRDGLS 166
Score = 30.9 bits (70), Expect = 0.058
Identities = 10/54 (18%), Positives = 20/54 (37%), Gaps = 3/54 (5%)
Query: 8 HPHNHLLHQRYADILYTQGGLENIELAISHYLMAINLNEKNIRALYGLALSCHQ 61
P+N + A++ +G + A+ Y + L N+ A L +
Sbjct: 84 APNNVDCLEACAEMQVCRG---QEKDALRMYEKILQLEADNLAANIFLGNYYYL 134
Score = 27.8 bits (62), Expect = 0.67
Identities = 8/60 (13%), Positives = 14/60 (23%), Gaps = 3/60 (5%)
Query: 2 EELFLHHPHNHLLHQRYADILYTQGGLENIELAISHYLMAINLNEKNIRALYGLALSCHQ 61
+ + + L A N + A Y + N+ L A
Sbjct: 44 TNVDKNSEISSKLATELALAYKKNR---NYDKAYLFYKELLQKAPNNVDCLEACAEMQVC 100
>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat,
TPR; 3.00A {Mus musculus}
Length = 365
Score = 31.2 bits (71), Expect = 0.051
Identities = 14/53 (26%), Positives = 21/53 (39%), Gaps = 3/53 (5%)
Query: 9 PHNHLLHQRYADILYTQGGLENIELAISHYLMAINLNEKNIRALYGLALSCHQ 61
P ++ L R L E A+ Y A+ + IR+ Y L +SC
Sbjct: 244 PEDYSLWNRLGATLANGD---RSEEAVEAYTRALEIQPGFIRSRYNLGISCIN 293
Score = 28.5 bits (64), Expect = 0.35
Identities = 14/45 (31%), Positives = 20/45 (44%), Gaps = 4/45 (8%)
Query: 18 YADILY----TQGGLENIELAISHYLMAINLNEKNIRALYGLALS 58
A+ TQ EN + AI + L N++AL LA+S
Sbjct: 98 DAEAWQFLGITQAENENEQAAIVALQRCLELQPNNLKALMALAVS 142
Score = 25.0 bits (55), Expect = 6.3
Identities = 7/36 (19%), Positives = 15/36 (41%)
Query: 28 LENIELAISHYLMAINLNEKNIRALYGLALSCHQVL 63
L A+S++L A++L K+ + +
Sbjct: 294 LGAYREAVSNFLTALSLQRKSRNQQQVPHPAISGNI 329
>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial
toxin, type III secretion, protein binding; 1.85A
{Pseudomonas aeruginosa} PDB: 2xcc_A
Length = 142
Score = 30.5 bits (69), Expect = 0.067
Identities = 7/53 (13%), Positives = 11/53 (20%), Gaps = 3/53 (5%)
Query: 9 PHNHLLHQRYADILYTQGGLENIELAISHYLMAINLNEKNIRALYGLALSCHQ 61
Y G + A + L+ + R GL
Sbjct: 15 EDTLEQLYALGFNQYQAG---KWDDAQKIFQALCMLDHYDARYFLGLGACRQS 64
Score = 28.6 bits (64), Expect = 0.31
Identities = 7/57 (12%), Positives = 16/57 (28%), Gaps = 3/57 (5%)
Query: 2 EELFLHHPHNHLLHQRYADILYTQGGLENIELAISHYLMAINLNEKNIRALYGLALS 58
+ L + ++ + G E A+ Y ++ R + A
Sbjct: 42 QALCMLDHYDARYFLGLGACRQSLG---LYEQALQSYSYGALMDINEPRFPFHAAEC 95
>1sxj_A Activator 1 95 kDa subunit; clamp loader, processivity clamp, DNA
sliding clamp, AAA+ at polymerase, DNA-binding protein;
HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP:
a.80.1.1 c.37.1.20
Length = 516
Score = 30.6 bits (69), Expect = 0.070
Identities = 7/46 (15%), Positives = 19/46 (41%)
Query: 64 TSAKCSAAKKKEISKQMMWVSKHLARQYEEQQGNTETLTELMSALQ 109
+S + ++ +W K+ ++ GN ++ +L + L
Sbjct: 11 SSGLEVLFQGPHMASDKLWTVKYAPTNLQQVCGNKGSVMKLKNWLA 56
>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex,
tetratricopeptide repeat, TPR, helical repeat, signaling
protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB:
2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A
Length = 368
Score = 30.4 bits (69), Expect = 0.084
Identities = 15/53 (28%), Positives = 24/53 (45%), Gaps = 3/53 (5%)
Query: 9 PHNHLLHQRYADILYTQGGLENIELAISHYLMAINLNEKNIRALYGLALSCHQ 61
P+++LL + L E A++ Y A+ L IR+ Y L +SC
Sbjct: 248 PNDYLLWNKLGATLANGN---QSEEAVAAYRRALELQPGYIRSRYNLGISCIN 297
Score = 28.8 bits (65), Expect = 0.34
Identities = 14/35 (40%), Positives = 16/35 (45%)
Query: 24 TQGGLENIELAISHYLMAINLNEKNIRALYGLALS 58
TQ E LAIS + L N AL LA+S
Sbjct: 107 TQAENEQELLAISALRRCLELKPDNQTALMALAVS 141
Score = 26.2 bits (58), Expect = 2.8
Identities = 7/29 (24%), Positives = 12/29 (41%)
Query: 28 LENIELAISHYLMAINLNEKNIRALYGLA 56
L A+ H+L A+N+ K+
Sbjct: 298 LGAHREAVEHFLEALNMQRKSRGPRGEGG 326
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic
reticulum, protein folding, tetratricopeptiderepeat, J
domain, unfolded protein respons; 3.00A {Homo sapiens}
PDB: 2y4u_A
Length = 450
Score = 30.4 bits (69), Expect = 0.097
Identities = 13/70 (18%), Positives = 23/70 (32%), Gaps = 4/70 (5%)
Query: 14 LHQRYADILYTQG----GLENIELAISHYLMAINLNEKNIRALYGLALSCHQVLTSAKCS 69
+ + L + E + AI Y A NE + + GL + + S K
Sbjct: 324 MEPDNVNALKDRAEAYLIEEMYDEAIQDYETAQEHNENDQQIREGLEKAQRLLKQSQKRD 383
Query: 70 AAKKKEISKQ 79
K + +
Sbjct: 384 YYKILGVKRN 393
Score = 29.3 bits (66), Expect = 0.22
Identities = 11/49 (22%), Positives = 17/49 (34%), Gaps = 3/49 (6%)
Query: 9 PHNHLLHQRYADILYTQGGLENIELAISHYLMAINLNEKNIRALYGLAL 57
+ L + A+ +G AIS A L N A Y ++
Sbjct: 174 VWDAELRELRAECFIKEG---EPRKAISDLKAASKLKNDNTEAFYKIST 219
Score = 28.1 bits (63), Expect = 0.58
Identities = 7/52 (13%), Positives = 13/52 (25%), Gaps = 3/52 (5%)
Query: 7 HHPHNHLLHQRYADILYTQGGLENIELAISHYLMAINLNEKNIRALYGLALS 58
+ +R AI + + N+ AL A +
Sbjct: 290 IAEYTVRSKERICHCFSKDE---KPVEAIRVCSEVLQMEPDNVNALKDRAEA 338
Score = 26.6 bits (59), Expect = 2.2
Identities = 9/53 (16%), Positives = 16/53 (30%), Gaps = 3/53 (5%)
Query: 9 PHNHLLHQRYADILYTQGGLENIELAISHYLMAINLNEKNIRALYGLALSCHQ 61
P N++ + R A + G + A+ I L A +
Sbjct: 57 PDNYIAYYRRATVFLAMG---KSKAALPDLTKVIQLKMDFTAARLQRGHLLLK 106
Score = 25.8 bits (57), Expect = 3.5
Identities = 9/39 (23%), Positives = 15/39 (38%), Gaps = 3/39 (7%)
Query: 19 ADILYTQGGLENIELAISHYLMAINLNEKNIRALYGLAL 57
L G + A+S + A++ + N A Y A
Sbjct: 33 GKKLLAAG---QLADALSQFHAAVDGDPDNYIAYYRRAT 68
>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria
translocation, allosteric REG phosphoprotein, TPR
repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae}
PDB: 3fp3_A 3fp4_A 3lca_A
Length = 537
Score = 30.5 bits (69), Expect = 0.10
Identities = 12/48 (25%), Positives = 18/48 (37%), Gaps = 4/48 (8%)
Query: 15 HQRYADILYTQG----GLENIELAISHYLMAINLNEKNIRALYGLALS 58
Q YA L +G +N AI +Y AI L+ ++
Sbjct: 21 RQAYAVQLKNRGNHFFTAKNFNEAIKYYQYAIELDPNEPVFYSNISAC 68
Score = 29.7 bits (67), Expect = 0.18
Identities = 8/54 (14%), Positives = 20/54 (37%), Gaps = 3/54 (5%)
Query: 8 HPHNHLLHQRYADILYTQGGLENIELAISHYLMAINLNEKNIRALYGLALSCHQ 61
P+ + + + + G ++E I A+ + + +AL A +
Sbjct: 55 DPNEPVFYSNISACYISTG---DLEKVIEFTTKALEIKPDHSKALLRRASANES 105
Score = 28.9 bits (65), Expect = 0.28
Identities = 12/49 (24%), Positives = 21/49 (42%), Gaps = 3/49 (6%)
Query: 8 HPHNHLLHQRYADILYTQGGLENIELAISHYLMAINLNEKNIRALYGLA 56
P + +A+IL +G + + AI Y +A L E + G+
Sbjct: 374 FPTLPEVPTFFAEILTDRG---DFDTAIKQYDIAKRLEEVQEKIHVGIG 419
Score = 28.5 bits (64), Expect = 0.45
Identities = 13/52 (25%), Positives = 19/52 (36%)
Query: 10 HNHLLHQRYADILYTQGGLENIELAISHYLMAINLNEKNIRALYGLALSCHQ 61
+ R + TQ E AI A L+ ++ +A GLA Q
Sbjct: 423 GKATILARQSSQDPTQLDEEKFNAAIKLLTKACELDPRSEQAKIGLAQLKLQ 474
Score = 27.4 bits (61), Expect = 0.98
Identities = 11/45 (24%), Positives = 19/45 (42%), Gaps = 4/45 (8%)
Query: 18 YADILYTQG----GLENIELAISHYLMAINLNEKNIRALYGLALS 58
Y Y +G L++ + A + A +LN +N+ LA
Sbjct: 309 YPPTYYHRGQMYFILQDYKNAKEDFQKAQSLNPENVYPYIQLACL 353
Score = 26.2 bits (58), Expect = 2.6
Identities = 7/49 (14%), Positives = 12/49 (24%), Gaps = 3/49 (6%)
Query: 9 PHNHLLHQRYADILYTQGGLENIELAISHYLMAINLNEKNIRALYGLAL 57
P + A + I+ AI + + L L
Sbjct: 459 PRSEQAKIGLAQLKLQME---KIDEAIELFEDSAILARTMDEKLQATTF 504
Score = 25.8 bits (57), Expect = 3.6
Identities = 8/49 (16%), Positives = 14/49 (28%), Gaps = 3/49 (6%)
Query: 9 PHNHLLHQRYADILYTQGGLENIELAISHYLMAINLNEKNIRALYGLAL 57
P N + + A +LY QG + + + A
Sbjct: 341 PENVYPYIQLACLLYKQG---KFTESEAFFNETKLKFPTLPEVPTFFAE 386
Score = 25.8 bits (57), Expect = 4.1
Identities = 6/30 (20%), Positives = 11/30 (36%)
Query: 28 LENIELAISHYLMAINLNEKNIRALYGLAL 57
EN + + A++LN + Y
Sbjct: 289 KENSQEFFKFFQKAVDLNPEYPPTYYHRGQ 318
>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha
helix, antivirus, antiviral protein; 2.80A {Homo
sapiens}
Length = 472
Score = 30.3 bits (68), Expect = 0.11
Identities = 13/43 (30%), Positives = 21/43 (48%), Gaps = 2/43 (4%)
Query: 6 LHHPHNHLLHQRYADILYTQGGLENIELAISHYLMAINLNEKN 48
L LLH RY + Q E + AI H++ + +N+K+
Sbjct: 365 LTPVAKQLLHLRYGNFQLYQMKCE--DKAIHHFIEGVKINQKS 405
Score = 28.0 bits (62), Expect = 0.73
Identities = 6/50 (12%), Positives = 12/50 (24%), Gaps = 3/50 (6%)
Query: 8 HPHNHLLHQRYADILYTQGGLENIELAISHYLMAINLNEKNIRALYGLAL 57
P + + A + + AI A+ N +
Sbjct: 243 APGVTDVLRSAAKFYRRKD---EPDKAIELLKKALEYIPNNAYLHCQIGC 289
Score = 27.2 bits (60), Expect = 1.2
Identities = 11/47 (23%), Positives = 19/47 (40%)
Query: 11 NHLLHQRYADILYTQGGLENIELAISHYLMAINLNEKNIRALYGLAL 57
+++ R + + LE I A++H A N+ R LA
Sbjct: 296 FQVMNLRENGMYGKRKLLELIGHAVAHLKKADEANDNLFRVCSILAS 342
Score = 26.8 bits (59), Expect = 1.4
Identities = 9/39 (23%), Positives = 16/39 (41%)
Query: 23 YTQGGLENIELAISHYLMAINLNEKNIRALYGLALSCHQ 61
+ G E A + A+ KN GLA++ ++
Sbjct: 146 RLKCGGNQNERAKVCFEKALEKKPKNPEFTSGLAIASYR 184
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 30.0 bits (67), Expect = 0.13
Identities = 23/133 (17%), Positives = 39/133 (29%), Gaps = 49/133 (36%)
Query: 3 EL---FLHHPHNHLLHQ----RYADILYTQGGLENIELAISHYL-------MAINLNEKN 48
EL FL + + L+ ++ +L L E + YL +A L ++N
Sbjct: 59 ELVGKFLGYV-SSLVEPSKVGQFDQVL--NLCLTEFE---NCYLEGNDIHALAAKLLQEN 112
Query: 49 ----------IRALYGLALSCHQVLTSAKCSA----AKKKEISKQMMWVSKHLARQYEE- 93
I+ + + SA + A+
Sbjct: 113 DTTLVKTKELIKNYITARIMAKRPFDKKSNSALFRAVGEGN------------AQLVAIF 160
Query: 94 -QQGNTET-LTEL 104
QGNT+ EL
Sbjct: 161 GGQGNTDDYFEEL 173
Score = 25.0 bits (54), Expect = 7.4
Identities = 8/29 (27%), Positives = 13/29 (44%), Gaps = 6/29 (20%)
Query: 50 RALYGLALSCHQVLTSAKCSAAKKKEISK 78
++LYGL L+ K A + S+
Sbjct: 384 QSLYGLNLTLR------KAKAPSGLDQSR 406
>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical,
transport protein; 1.60A {Trypanosoma brucei} SCOP:
a.118.8.1
Length = 121
Score = 29.0 bits (65), Expect = 0.18
Identities = 13/35 (37%), Positives = 16/35 (45%)
Query: 24 TQGGLENIELAISHYLMAINLNEKNIRALYGLALS 58
TQ E LAI A L+ K+I LA+S
Sbjct: 60 TQAENEKDGLAIIALNHARMLDPKDIAVHAALAVS 94
>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone,
endoplasmic reticulum, TPR repeat, UNF protein response;
2.51A {Mus musculus}
Length = 359
Score = 29.2 bits (66), Expect = 0.22
Identities = 7/52 (13%), Positives = 13/52 (25%), Gaps = 3/52 (5%)
Query: 7 HHPHNHLLHQRYADILYTQGGLENIELAISHYLMAINLNEKNIRALYGLALS 58
+ +R AI + + N+ AL A +
Sbjct: 267 VAEYTVRSKERICHCFSKDE---KPVEAIRICSEVLQMEPDNVNALKDRAEA 315
Score = 28.0 bits (63), Expect = 0.52
Identities = 10/43 (23%), Positives = 15/43 (34%), Gaps = 4/43 (9%)
Query: 18 YADILYTQG----GLENIELAISHYLMAINLNEKNIRALYGLA 56
+ L + E + AI Y A NE + + GL
Sbjct: 305 NVNALKDRAEAYLIEEMYDEAIQDYEAAQEHNENDQQIREGLE 347
Score = 27.2 bits (61), Expect = 0.98
Identities = 11/49 (22%), Positives = 17/49 (34%), Gaps = 3/49 (6%)
Query: 9 PHNHLLHQRYADILYTQGGLENIELAISHYLMAINLNEKNIRALYGLAL 57
+ L + A+ +G AIS A L N A Y ++
Sbjct: 151 VWDAELRELRAECFIKEG---EPRKAISDLKAASKLKSDNTEAFYKIST 196
Score = 26.5 bits (59), Expect = 1.9
Identities = 9/53 (16%), Positives = 16/53 (30%), Gaps = 3/53 (5%)
Query: 9 PHNHLLHQRYADILYTQGGLENIELAISHYLMAINLNEKNIRALYGLALSCHQ 61
P N++ + R A + G + A+ I L A +
Sbjct: 34 PDNYIAYYRRATVFLAMG---KSKAALPDLTKVIALKMDFTAARLQRGHLLLK 83
Score = 25.7 bits (57), Expect = 3.5
Identities = 10/43 (23%), Positives = 16/43 (37%), Gaps = 3/43 (6%)
Query: 15 HQRYADILYTQGGLENIELAISHYLMAINLNEKNIRALYGLAL 57
H L G + A+S + A++ + N A Y A
Sbjct: 6 HLELGKKLLAAG---QLADALSQFHAAVDGDPDNYIAYYRRAT 45
>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase
110; OGT, glcnac, nucleoporin, O-linked glycosylation,
TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP:
a.118.8.1
Length = 388
Score = 29.0 bits (66), Expect = 0.22
Identities = 11/54 (20%), Positives = 20/54 (37%), Gaps = 3/54 (5%)
Query: 8 HPHNHLLHQRYADILYTQGGLENIELAISHYLMAINLNEKNIRALYGLALSCHQ 61
+P + ++ +G ++ AI HY A+ L I LA +
Sbjct: 63 NPLLAEAYSNLGNVYKERG---QLQEAIEHYRHALRLKPDFIDGYINLAAALVA 113
Score = 29.0 bits (66), Expect = 0.30
Identities = 10/43 (23%), Positives = 13/43 (30%), Gaps = 3/43 (6%)
Query: 19 ADILYTQGGLENIELAISHYLMAINLNEKNIRALYGLALSCHQ 61
A Y G + E A H + N L L+ Q
Sbjct: 6 AHREYQAG---DFEAAERHCMQLWRQEPDNTGVLLLLSSIHFQ 45
Score = 28.7 bits (65), Expect = 0.35
Identities = 8/54 (14%), Positives = 16/54 (29%), Gaps = 3/54 (5%)
Query: 8 HPHNHLLHQRYADILYTQGGLENIELAISHYLMAINLNEKNIRALYGLALSCHQ 61
P N + + I + ++ + +AI N A L +
Sbjct: 29 EPDNTGVLLLLSSIHFQCR---RLDRSAHFSTLAIKQNPLLAEAYSNLGNVYKE 79
Score = 27.9 bits (63), Expect = 0.64
Identities = 11/54 (20%), Positives = 19/54 (35%), Gaps = 3/54 (5%)
Query: 8 HPHNHLLHQRYADILYTQGGLENIELAISHYLMAINLNEKNIRALYGLALSCHQ 61
+P + + ++L G +E A + YL AI A L +
Sbjct: 131 NPDLYCVRSDLGNLLKALG---RLEEAKACYLKAIETQPNFAVAWSNLGCVFNA 181
Score = 27.9 bits (63), Expect = 0.74
Identities = 12/50 (24%), Positives = 19/50 (38%), Gaps = 3/50 (6%)
Query: 8 HPHNHLLHQRYADILYTQGGLENIELAISHYLMAINLNEKNIRALYGLAL 57
P H A +L QG ++ A+ HY AI ++ A +
Sbjct: 335 FPEFAAAHSNLASVLQQQG---KLQEALMHYKEAIRISPTFADAYSNMGN 381
Score = 27.5 bits (62), Expect = 0.95
Identities = 17/53 (32%), Positives = 25/53 (47%), Gaps = 3/53 (5%)
Query: 9 PHNHLLHQRYADILYTQGGLENIELAISHYLMAINLNEKNIRALYGLALSCHQ 61
P++ ++H A + Y QG I+LAI Y AI L A LA + +
Sbjct: 234 PNHAVVHGNLACVYYEQG---LIDLAIDTYRRAIELQPHFPDAYCNLANALKE 283
Score = 26.7 bits (60), Expect = 1.6
Identities = 15/54 (27%), Positives = 21/54 (38%), Gaps = 3/54 (5%)
Query: 8 HPHNHLLHQRYADILYTQGGLENIELAISHYLMAINLNEKNIRALYGLALSCHQ 61
P + A+I QG NIE A+ Y A+ + + A LA Q
Sbjct: 301 CPTHADSLNNLANIKREQG---NIEEAVRLYRKALEVFPEFAAAHSNLASVLQQ 351
Score = 26.7 bits (60), Expect = 1.6
Identities = 12/50 (24%), Positives = 19/50 (38%), Gaps = 3/50 (6%)
Query: 8 HPHNHLLHQRYADILYTQGGLENIELAISHYLMAINLNEKNIRALYGLAL 57
P+ + + QG I LAI H+ A+ L+ + A L
Sbjct: 165 QPNFAVAWSNLGCVFNAQG---EIWLAIHHFEKAVTLDPNFLDAYINLGN 211
Score = 26.7 bits (60), Expect = 1.8
Identities = 9/49 (18%), Positives = 20/49 (40%), Gaps = 3/49 (6%)
Query: 9 PHNHLLHQRYADILYTQGGLENIELAISHYLMAINLNEKNIRALYGLAL 57
P+ + ++L + A++ YL A++L+ + LA
Sbjct: 200 PNFLDAYINLGNVLKEAR---IFDRAVAAYLRALSLSPNHAVVHGNLAC 245
Score = 26.7 bits (60), Expect = 1.8
Identities = 12/49 (24%), Positives = 20/49 (40%), Gaps = 3/49 (6%)
Query: 9 PHNHLLHQRYADILYTQGGLENIELAISHYLMAINLNEKNIRALYGLAL 57
PH + A+ L +G ++ A Y A+ L + +L LA
Sbjct: 268 PHFPDAYCNLANALKEKG---SVAEAEDCYNTALRLCPTHADSLNNLAN 313
Score = 25.6 bits (57), Expect = 3.5
Identities = 10/49 (20%), Positives = 16/49 (32%), Gaps = 3/49 (6%)
Query: 9 PHNHLLHQRYADILYTQGGLENIELAISHYLMAINLNEKNIRALYGLAL 57
P + A L G ++E A+ Y+ A+ N L
Sbjct: 98 PDFIDGYINLAAALVAAG---DMEGAVQAYVSALQYNPDLYCVRSDLGN 143
>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin
ligase; 2.60A {Schizosaccharomyces pombe}
Length = 597
Score = 29.0 bits (65), Expect = 0.25
Identities = 8/34 (23%), Positives = 13/34 (38%)
Query: 28 LENIELAISHYLMAINLNEKNIRALYGLALSCHQ 61
L NI LA + + L + + L L +
Sbjct: 454 LGNILLANEYLQSSYALFQYDPLLLNELGVVAFN 487
Score = 26.0 bits (57), Expect = 3.7
Identities = 12/59 (20%), Positives = 20/59 (33%), Gaps = 4/59 (6%)
Query: 2 EELFLHHPHNHLLHQRYADILYTQG----GLENIELAISHYLMAINLNEKNIRALYGLA 56
E+ + A + Y +G L N + A Y A+ ++ K A L
Sbjct: 183 EKNANKLLMQDGGIKLEASMCYLRGQVYTNLSNFDRAKECYKEALMVDAKCYEAFDQLV 241
Score = 25.6 bits (56), Expect = 4.6
Identities = 8/34 (23%), Positives = 11/34 (32%)
Query: 28 LENIELAISHYLMAINLNEKNIRALYGLALSCHQ 61
+ AIS Y A L + L + Q
Sbjct: 420 EGEHDQAISAYTTAARLFQGTHLPYLFLGMQHMQ 453
Score = 25.2 bits (55), Expect = 5.9
Identities = 9/48 (18%), Positives = 19/48 (39%), Gaps = 3/48 (6%)
Query: 9 PHNHLLHQRYADILYTQGGLENIELAISHYLMAINLNEKNIRALYGLA 56
++ +H A + + LAI+H ++ ++ I A L
Sbjct: 547 TNDANVHTAIALVYLHKK---IPGLAITHLHESLAISPNEIMASDLLK 591
>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A
{Saccharomyces cerevisiae}
Length = 258
Score = 29.1 bits (66), Expect = 0.27
Identities = 13/44 (29%), Positives = 17/44 (38%), Gaps = 5/44 (11%)
Query: 18 YADILYTQG----GLENIELAISHYLMAINLNEKNIRALYGLAL 57
AD +G + AI HY A L+ K+I L A
Sbjct: 4 MADKEKAEGNKFYKARQFDEAIEHYNKAWELH-KDITYLNNRAA 46
Score = 25.6 bits (57), Expect = 3.4
Identities = 7/44 (15%), Positives = 13/44 (29%), Gaps = 4/44 (9%)
Query: 18 YADILYTQG----GLENIELAISHYLMAINLNEKNIRALYGLAL 57
A+ +G + A+ Y I ++ R A
Sbjct: 138 KAEEARLEGKEYFTKSDWPNAVKAYTEMIKRAPEDARGYSNRAA 181
Score = 25.6 bits (57), Expect = 3.4
Identities = 8/30 (26%), Positives = 12/30 (40%)
Query: 28 LENIELAISHYLMAINLNEKNIRALYGLAL 57
L + AI+ AI + +RA A
Sbjct: 186 LMSFPEAIADCNKAIEKDPNFVRAYIRKAT 215
>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein
structure initiative, northeast structural genomics
consortium, NESG; 2.28A {Cytophaga hutchinsonii}
Length = 272
Score = 28.8 bits (65), Expect = 0.27
Identities = 9/47 (19%), Positives = 15/47 (31%), Gaps = 3/47 (6%)
Query: 15 HQRYADILYTQGGLENIELAISHYLMAINLNEKNIRALYGLALSCHQ 61
RYAD L+ N AI + + A+ ++
Sbjct: 6 EFRYADFLFKNN---NYAEAIEVFNKLEAKKYNSPYIYNRRAVCYYE 49
Score = 26.9 bits (60), Expect = 1.3
Identities = 9/50 (18%), Positives = 17/50 (34%), Gaps = 3/50 (6%)
Query: 9 PHNHLLHQRYADILYTQGGLENIELAISHYLMAINLNEKNIRALYGLALS 58
++ + Y +G N LAI + I + + Y L +
Sbjct: 105 TTRLDMYGQIGSYFYNKG---NFPLAIQYMEKQIRPTTTDPKVFYELGQA 151
Score = 26.9 bits (60), Expect = 1.4
Identities = 7/40 (17%), Positives = 13/40 (32%)
Query: 9 PHNHLLHQRYADILYTQGGLENIELAISHYLMAINLNEKN 48
P+ ++ + A Q LA +Y I +
Sbjct: 173 PNIYIGYLWRARANAAQDPDTKQGLAKPYYEKLIEVCAPG 212
Score = 26.5 bits (59), Expect = 2.2
Identities = 9/49 (18%), Positives = 16/49 (32%), Gaps = 3/49 (6%)
Query: 9 PHNHLLHQRYADILYTQGGLENIELAISHYLMAINLNEKNIRALYGLAL 57
+ Y IL +G LAI Y A++ + + +
Sbjct: 71 KAKSADFEYYGKILMKKG---QDSLAIQQYQAAVDRDTTRLDMYGQIGS 116
Score = 25.7 bits (57), Expect = 4.0
Identities = 9/60 (15%), Positives = 15/60 (25%), Gaps = 4/60 (6%)
Query: 18 YADILYTQG----GLENIELAISHYLMAINLNEKNIRALYGLALSCHQVLTSAKCSAAKK 73
+ Y G + A S ++ + L A + K AK
Sbjct: 141 DPKVFYELGQAYYYNKEYVKADSSFVKVLELKPNIYIGYLWRARANAAQDPDTKQGLAKP 200
Score = 24.5 bits (54), Expect = 8.4
Identities = 6/51 (11%), Positives = 14/51 (27%)
Query: 8 HPHNHLLHQRYADILYTQGGLENIELAISHYLMAINLNEKNIRALYGLALS 58
++ ++ R A Y + + I Y +N +
Sbjct: 33 KYNSPYIYNRRAVCYYELAKYDLAQKDIETYFSKVNATKAKSADFEYYGKI 83
>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle,
phagocyte oxidase factor, SH3 domain, repeat, TPR
repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP:
a.118.8.1 PDB: 1wm5_A 1e96_B*
Length = 213
Score = 28.1 bits (63), Expect = 0.43
Identities = 9/48 (18%), Positives = 21/48 (43%), Gaps = 4/48 (8%)
Query: 18 YADILYTQG----GLENIELAISHYLMAINLNEKNIRALYGLALSCHQ 61
++ I + G L+N+ A + +IN ++ A + + +Q
Sbjct: 36 HSRICFNIGCMYTILKNMTEAEKAFTRSINRDKHLAVAYFQRGMLYYQ 83
Score = 25.8 bits (57), Expect = 3.3
Identities = 7/48 (14%), Positives = 16/48 (33%), Gaps = 4/48 (8%)
Query: 18 YADILY----TQGGLENIELAISHYLMAINLNEKNIRALYGLALSCHQ 61
++LY E + A +A ++ + + A+ C
Sbjct: 120 ACEVLYNIAFMYAKKEEWKKAEEQLALATSMKSEPRHSKIDKAMECVW 167
>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR
repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1
d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A
Length = 457
Score = 28.5 bits (63), Expect = 0.44
Identities = 16/77 (20%), Positives = 23/77 (29%), Gaps = 9/77 (11%)
Query: 28 LENIELAISHYLMAINLNEKNIRALY--GLALSCHQVLTSAK--CSAAKK-----KEISK 78
L A+ A+ L+ N + LY G A SAK + K
Sbjct: 330 LREYTKAVECCDKALGLDSANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNPQNKAARL 389
Query: 79 QMMWVSKHLARQYEEQQ 95
Q+ K E +
Sbjct: 390 QISMCQKKAKEHNERDR 406
>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting
complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin,
ubiquitin ligase, twinning; 2.80A {Homo sapiens}
Length = 330
Score = 27.6 bits (62), Expect = 0.69
Identities = 5/34 (14%), Positives = 16/34 (47%)
Query: 28 LENIELAISHYLMAINLNEKNIRALYGLALSCHQ 61
N +LA + A+++ ++ ++ + + Q
Sbjct: 172 TNNSKLAERFFSQALSIAPEDPFVMHEVGVVAFQ 205
Score = 26.9 bits (60), Expect = 1.3
Identities = 10/48 (20%), Positives = 18/48 (37%), Gaps = 3/48 (6%)
Query: 9 PHNHLLHQRYADILYTQGGLENIELAISHYLMAINLNEKNIRALYGLA 56
P N + I G N E A+ ++ A+ L + ++ L
Sbjct: 267 PQNASTYSAIGYIHSLMG---NFENAVDYFHTALGLRRDDTFSVTMLG 311
Score = 25.3 bits (56), Expect = 4.4
Identities = 5/34 (14%), Positives = 11/34 (32%)
Query: 28 LENIELAISHYLMAINLNEKNIRALYGLALSCHQ 61
+ A++ Y A L + + + L
Sbjct: 138 ESEHDQAMAAYFTAAQLMKGCHLPMLYIGLEYGL 171
>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens}
SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A
Length = 336
Score = 27.9 bits (62), Expect = 0.73
Identities = 14/77 (18%), Positives = 25/77 (32%), Gaps = 9/77 (11%)
Query: 28 LENIELAISHYLMAINLNEKNIRALY--GLALSCHQVLTSAK--CSAAKK-----KEISK 78
L+ AI A+ L+ N + L G A A+ + K
Sbjct: 209 LQAFSAAIESCNKALELDSNNEKGLSRRGEAHLAVNDFELARADFQKVLQLYPNNKAAKT 268
Query: 79 QMMWVSKHLARQYEEQQ 95
Q+ + + RQ ++
Sbjct: 269 QLAVCQQRIRRQLAREK 285
>3ic6_A Putative methylase family protein; putative methylase family Pro
structural genomics, PSI-2, protein structure
initiative; 2.59A {Neisseria gonorrhoeae fa 1090}
Length = 223
Score = 27.3 bits (61), Expect = 1.1
Identities = 8/21 (38%), Positives = 10/21 (47%)
Query: 27 GLENIELAISHYLMAINLNEK 47
GL E+ + LM IN N
Sbjct: 153 GLSIEEVRACNRLMTINGNPD 173
>3ilk_A Uncharacterized tRNA/RRNA methyltransferase HI038; APC63004,
methylase family protein, haemophilus influenzae R
structural genomics; 2.01A {Haemophilus influenzae}
Length = 244
Score = 26.8 bits (60), Expect = 1.4
Identities = 9/21 (42%), Positives = 10/21 (47%)
Query: 27 GLENIELAISHYLMAINLNEK 47
GL N EL HY + I N
Sbjct: 119 GLTNEELLKCHYHLNIPANPD 139
>3kty_A Probable methyltransferase; alpha-beta-alpha sandwich, structural
genomics, PSI-2, prote structure initiative; 2.30A
{Bordetella pertussis}
Length = 173
Score = 26.7 bits (60), Expect = 1.5
Identities = 6/21 (28%), Positives = 11/21 (52%)
Query: 27 GLENIELAISHYLMAINLNEK 47
GL N ++ + H + I N +
Sbjct: 131 GLTNAQIELCHRICHIPANPQ 151
>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and
HSP90, C-terminal PA HSP70, peptide binding protein;
1.60A {Saccharomyces cerevisiae}
Length = 126
Score = 26.1 bits (58), Expect = 1.6
Identities = 8/34 (23%), Positives = 13/34 (38%)
Query: 28 LENIELAISHYLMAINLNEKNIRALYGLALSCHQ 61
L + AI+ AI + +RA A +
Sbjct: 51 LMSFPEAIADCNKAIEKDPNFVRAYIRKATAQIA 84
>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural
protein; 3.00A {Mus musculus} SCOP: a.118.8.7
Length = 530
Score = 26.7 bits (58), Expect = 1.7
Identities = 16/105 (15%), Positives = 28/105 (26%), Gaps = 32/105 (30%)
Query: 1 MEELFLHHPHNHLLHQRYADILYTQGGLENIELAISHYLMAINLNEKNIRALYGLALSCH 60
E + Y D L + N R L+
Sbjct: 414 FELGLKKYGDIPEYVLAYIDYLSHLN------------------EDNNTRVLF------E 449
Query: 61 QVLTSAKCSAAKKKEISKQMMWVSKHLARQYEEQQGNTETLTELM 105
+VLTS K EI + + +E G+ ++ ++
Sbjct: 450 RVLTSGSLPPEKSGEIWARFL--------AFESNIGDLASILKVE 486
>3onp_A TRNA/RRNA methyltransferase (SPOU); structural genomics, PSI-2,
protein structure initiative, MI center for structural
genomics, MCSG; 1.90A {Rhodobacter sphaeroides}
Length = 249
Score = 26.4 bits (59), Expect = 1.7
Identities = 6/21 (28%), Positives = 16/21 (76%)
Query: 27 GLENIELAISHYLMAINLNEK 47
GLEN ++A+++ ++ + +N +
Sbjct: 121 GLENEDVALANAIVTVPVNPE 141
>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis,
TPR, superhelix, protein binding; HET: MSE; 2.00A
{Pseudomonas aeruginosa} PDB: 2fi7_A
Length = 252
Score = 26.5 bits (59), Expect = 2.0
Identities = 4/29 (13%), Positives = 11/29 (37%)
Query: 28 LENIELAISHYLMAINLNEKNIRALYGLA 56
++ A ++ ++ LN +A
Sbjct: 154 MKKPAQAKEYFEKSLRLNRNQPSVALEMA 182
>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast
structural genomics consortiu PSI-biology, protein
structure initiative, chaperone; NMR {Homo sapiens}
Length = 133
Score = 25.7 bits (57), Expect = 2.7
Identities = 8/32 (25%), Positives = 11/32 (34%), Gaps = 2/32 (6%)
Query: 28 LENIELAISHYLMAINLNEKNIRALY--GLAL 57
L +LA+ I L I+ AL
Sbjct: 63 LLEFQLALKDCEECIQLEPTFIKGYTRKAAAL 94
>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP:
k.38.1.1
Length = 243
Score = 25.9 bits (58), Expect = 3.2
Identities = 12/45 (26%), Positives = 20/45 (44%), Gaps = 4/45 (8%)
Query: 18 YADILYTQG----GLENIELAISHYLMAINLNEKNIRALYGLALS 58
D+ Y G LE +LA+ + A+ LNE + A + +
Sbjct: 124 NGDLFYMLGTVLVKLEQPKLALPYLQRAVELNENDTEARFQFGMC 168
Score = 25.2 bits (56), Expect = 4.4
Identities = 9/30 (30%), Positives = 15/30 (50%)
Query: 28 LENIELAISHYLMAINLNEKNIRALYGLAL 57
EN E A+ AI++ ++ AL+ L
Sbjct: 206 KENREKALEMLDKAIDIQPDHMLALHAKKL 235
Score = 25.2 bits (56), Expect = 4.7
Identities = 8/51 (15%), Positives = 15/51 (29%), Gaps = 1/51 (1%)
Query: 9 PHNHLLHQRYADILYTQG-GLENIELAISHYLMAINLNEKNIRALYGLALS 58
P + +G + E A + AI N+++ A
Sbjct: 16 PRGSHMASMTGGQQMGRGSEFGDYEKAAEAFTKAIEENKEDAIPYINFANL 66
Score = 24.8 bits (55), Expect = 6.7
Identities = 10/49 (20%), Positives = 22/49 (44%), Gaps = 3/49 (6%)
Query: 9 PHNHLLHQRYADILYTQGGLENIELAISHYLMAINLNEKNIRALYGLAL 57
+ + + +A++L + +E A++ Y A+ L+ A YG
Sbjct: 54 KEDAIPYINFANLLSSVN---ELERALAFYDKALELDSSAATAYYGAGN 99
>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein;
secretin, TPR repeat, type IV pilus, bacterail
virulence; 1.54A {Neisseria meningitidis}
Length = 225
Score = 25.7 bits (57), Expect = 3.2
Identities = 5/29 (17%), Positives = 10/29 (34%)
Query: 28 LENIELAISHYLMAINLNEKNIRALYGLA 56
LA ++ ++ + A LA
Sbjct: 126 QGQFGLAEAYLKRSLAAQPQFPPAFKELA 154
>2oz8_A MLL7089 protein; structural genomics, unknown function, PSI-2,
protein struct initiative; 2.48A {Mesorhizobium loti}
Length = 389
Score = 25.7 bits (57), Expect = 3.3
Identities = 10/56 (17%), Positives = 16/56 (28%), Gaps = 12/56 (21%)
Query: 1 MEELFLHHPHNHLLHQRYADILYTQGGLE------------NIELAISHYLMAINL 44
E LL ADIL G + I ++I + + +
Sbjct: 249 SGEYLDLQGKRLLLEAHAADILNVHGQVTDVMRIGWLAAELGIPISIGNTFLEAGV 304
>2dba_A Smooth muscle cell associated protein-1, isoform 2;
tetratricopeptide repeat, structural genomics, NPPSFA;
NMR {Homo sapiens}
Length = 148
Score = 25.4 bits (56), Expect = 3.4
Identities = 8/26 (30%), Positives = 15/26 (57%)
Query: 28 LENIELAISHYLMAINLNEKNIRALY 53
LE+ + A + AI + +++ALY
Sbjct: 78 LEDYDKAETEASKAIEKDGGDVKALY 103
>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein,
tetratricopeptide repeat protein, HOST-virus
interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1
Length = 131
Score = 25.3 bits (56), Expect = 3.9
Identities = 11/33 (33%), Positives = 15/33 (45%), Gaps = 2/33 (6%)
Query: 28 LENIELAISHYLMAINLNEKNIRALY--GLALS 58
L N A+ AI ++ +A GLALS
Sbjct: 59 LGNYAGAVQDCERAICIDPAYSKAYGRMGLALS 91
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3
ligase, ubiquitinylation, TPR, heat-shock protein
complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Length = 281
Score = 25.3 bits (55), Expect = 5.2
Identities = 10/77 (12%), Positives = 29/77 (37%), Gaps = 9/77 (11%)
Query: 28 LENIELAISHYLMAINLNEKNIRALY--GLALS-------CHQVLTSAKCSAAKKKEISK 78
++ E A++ A+ L+ ++++A + G L A A +++
Sbjct: 51 MQQPEQALADCRRALELDGQSVKAHFFLGQCQLEMESYDEAIANLQRAYSLAKEQRLNFG 110
Query: 79 QMMWVSKHLARQYEEQQ 95
+ + +A++
Sbjct: 111 DDIPSALRIAKKKRWNS 127
>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center
for structu genomics, MCSG, tetratricopeptide repeat
domain; HET: PGE; 1.85A {Caenorhabditis elegans}
Length = 127
Score = 24.9 bits (55), Expect = 5.4
Identities = 11/40 (27%), Positives = 14/40 (35%), Gaps = 4/40 (10%)
Query: 18 YADILYTQG----GLENIELAISHYLMAINLNEKNIRALY 53
A G ++ E A HY AI L+ NI
Sbjct: 7 AAIAEKDLGNAAYKQKDFEKAHVHYDKAIELDPSNITFYN 46
>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown
function; 1.98A {Escherichia coli} SCOP: a.118.8.1
Length = 275
Score = 25.0 bits (55), Expect = 5.7
Identities = 10/75 (13%), Positives = 18/75 (24%), Gaps = 3/75 (4%)
Query: 28 LENIELAISHYLMAINLNEKNIRALYGLALS---CHQVLTSAKCSAAKKKEISKQMMWVS 84
+LA L + + L L+ + +K +Q W
Sbjct: 124 GGRDKLAQDDLLAFYQDDPNDPFRSLWLYLAEQKLDEKQAKEVLKQHFEKSDKEQWGWNI 183
Query: 85 KHLARQYEEQQGNTE 99
+Q E
Sbjct: 184 VEFYLGNISEQTLME 198
>1a17_A Serine/threonine protein phosphatase 5; hydrolase,
protein-protein interactions, TPR, S helix; 2.45A {Homo
sapiens} SCOP: a.118.8.1 PDB: 2bug_A
Length = 166
Score = 25.0 bits (55), Expect = 6.0
Identities = 8/32 (25%), Positives = 13/32 (40%), Gaps = 2/32 (6%)
Query: 28 LENIELAISHYLMAINLNEKNIRALY--GLAL 57
E A+ AI L++K I+ Y +
Sbjct: 60 TECYGYALGDATRAIELDKKYIKGYYRRAASN 91
>1k8k_B ARP2, actin-like protein 2; beta-propeller, structural protein;
2.00A {Bos taurus} SCOP: c.55.1.1 PDB: 1tyq_B* 1u2v_B*
2p9i_B* 2p9l_B 2p9n_B* 2p9p_B* 2p9s_B* 2p9u_B* 3dxk_B*
3dxm_B* 3rse_B 2p9k_B*
Length = 394
Score = 25.1 bits (55), Expect = 6.6
Identities = 4/18 (22%), Positives = 11/18 (61%), Gaps = 3/18 (16%)
Query: 77 SKQMMWVSKHLARQYEEQ 94
K W+++ ++Y+E+
Sbjct: 367 DKDNFWMTR---QEYQEK 381
>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C,
TPR-containing domain, structural genomics; 1.63A
{Plasmodium falciparum} SCOP: a.118.8.1
Length = 198
Score = 24.7 bits (54), Expect = 6.8
Identities = 15/76 (19%), Positives = 27/76 (35%), Gaps = 9/76 (11%)
Query: 28 LENIELAISHYLMAINLNEKNIRALY--GLALSCHQVLTSAK--CSAAKK-----KEISK 78
++ AI H + +++ N++ALY G+A L AK A +I
Sbjct: 101 NKDYPKAIDHASKVLKIDKNNVKALYKLGVANMYFGFLEEAKENLYKAASLNPNNLDIRN 160
Query: 79 QMMWVSKHLARQYEEQ 94
L ++
Sbjct: 161 SYELCVNKLKEARKKD 176
>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural
genomics, PSI-2, protein structure initiative; 2.80A
{Salinibacter ruber} PDB: 2kcl_A 2kcv_A
Length = 100
Score = 24.1 bits (53), Expect = 6.9
Identities = 6/51 (11%), Positives = 14/51 (27%), Gaps = 3/51 (5%)
Query: 6 LHHPHNHLLHQRYADILYTQGGLENIELAISHYLMAINLNEKNIRALYGLA 56
+ P + A N A++ + + + + Y L
Sbjct: 1 MEDPEDPFTRYALAQEHLKHD---NASRALALFEELVETDPDYVGTYYHLG 48
>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center
for structu genomics, MCSG, tetratricopeptide repeat
domain; 1.60A {Caenorhabditis elegans}
Length = 126
Score = 24.5 bits (54), Expect = 7.8
Identities = 7/32 (21%), Positives = 11/32 (34%), Gaps = 2/32 (6%)
Query: 28 LENIELAISHYLMAINLNEKNIRALY--GLAL 57
L + A+ I L+ K I+ L
Sbjct: 60 LMEFQRALDDCDTCIRLDSKFIKGYIRKAACL 91
>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide
repeat, type III secretion; HET: MLY; 1.95A {Yersinia
enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*
Length = 148
Score = 24.5 bits (53), Expect = 7.9
Identities = 8/57 (14%), Positives = 16/57 (28%), Gaps = 3/57 (5%)
Query: 2 EELFLHHPHNHLLHQRYADILYTQGGLENIELAISHYLMAINLNEKNIRALYGLALS 58
+ L + ++ G +LAI Y ++ R + A
Sbjct: 45 QALCVLDHYDSRFFLGLGACRQAMG---QYDLAIHSYSYGAVMDIXEPRFPFHAAEC 98
>2fxu_A Alpha-actin-1, actin, alpha skeletal muscle; actin complexed to
bistramide A, structural protein; HET: HIC ATP BID;
1.35A {Oryctolagus cuniculus} SCOP: c.55.1.1 c.55.1.1
PDB: 1h1v_A* 1kxp_A* 1lot_B* 1m8q_7* 1ma9_B* 1mvw_1*
1nwk_A* 1o18_1* 1o19_1* 1o1a_1* 1o1b_0* 1o1c_0* 1o1d_0*
1o1e_1* 1o1f_0* 1o1g_1* 1j6z_A* 1qz6_A* 1rdw_X* 1rfq_A*
...
Length = 375
Score = 24.7 bits (54), Expect = 8.7
Identities = 6/18 (33%), Positives = 12/18 (66%), Gaps = 3/18 (16%)
Query: 77 SKQMMWVSKHLARQYEEQ 94
+ Q MW++K ++Y+E
Sbjct: 351 TFQQMWITK---QEYDEA 365
>2pmv_A Gastric intrinsic factor; cobalamin transport protein alpha6-alpha6
motif two domain P transport protein; HET: NAG B12;
2.60A {Homo sapiens} PDB: 3kq4_A*
Length = 399
Score = 24.7 bits (53), Expect = 8.7
Identities = 10/63 (15%), Positives = 25/63 (39%), Gaps = 2/63 (3%)
Query: 51 ALYGLALSCHQVLTSAKCSAAKKKEISKQMMWVSKHLARQYEEQ--QGNTETLTELMSAL 108
A+ LAL+C + + + + + ++ + ++ G+ + M AL
Sbjct: 156 AMATLALTCMYNKIPVGSEEGYRSLFGQVLKDIVEKISMKIKDNGIIGDIYSTGLAMQAL 215
Query: 109 QVS 111
V+
Sbjct: 216 SVT 218
>3v6t_A DHAX3; tandem repeats, DNA specific binding protein, DNA binding
DNA complex; HET: DNA; 1.85A {Xanthomonas} PDB: 3v6p_A
2kq5_A
Length = 499
Score = 24.7 bits (54), Expect = 8.8
Identities = 6/45 (13%), Positives = 14/45 (31%), Gaps = 4/45 (8%)
Query: 18 YADILYTQGG----LENIELAISHYLMAINLNEKNIRALYGLALS 58
+ + G LE ++ + A L + + A+
Sbjct: 343 QVVAIASHDGGKQALETVQRLLPVLCQAHGLTPEQVVAIASNGGG 387
>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response,
DNA repair, gene regulation; 2.05A {Mus musculus}
Length = 474
Score = 24.6 bits (53), Expect = 8.9
Identities = 9/57 (15%), Positives = 22/57 (38%), Gaps = 6/57 (10%)
Query: 6 LHHPHNHLLHQRYADILYTQG------GLENIELAISHYLMAINLNEKNIRALYGLA 56
L H N + Q + +L ++ ++ +A+ ++ + R+ Y L
Sbjct: 164 LTHCKNKVSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQMDVLDGRSWYILG 220
>3k9i_A BH0479 protein; putative protein binding protein, structural
genomics, joint for structural genomics, JCSG; 2.71A
{Bacillus halodurans}
Length = 117
Score = 23.9 bits (52), Expect = 9.4
Identities = 5/58 (8%), Positives = 11/58 (18%), Gaps = 3/58 (5%)
Query: 3 ELFLHHPHNHLLHQRYADILYTQGGLENIELAISHYLMAINLNEKNIRALYGLALSCH 60
L + T G A + + + A+ +
Sbjct: 18 ASGLQGKDLAECYLGLGSTFRTLGEYRK---AEAVLANGVKQFPNHQALRVFYAMVLY 72
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.318 0.128 0.367
Gapped
Lambda K H
0.267 0.0778 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 1,649,758
Number of extensions: 84842
Number of successful extensions: 392
Number of sequences better than 10.0: 1
Number of HSP's gapped: 391
Number of HSP's successfully gapped: 198
Length of query: 111
Length of database: 6,701,793
Length adjustment: 75
Effective length of query: 36
Effective length of database: 4,607,718
Effective search space: 165877848
Effective search space used: 165877848
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 51 (23.3 bits)