RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy14212
         (111 letters)



>d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT
           {Human (Homo sapiens) [TaxId: 9606]}
          Length = 388

 Score = 28.5 bits (62), Expect = 0.17
 Identities = 12/54 (22%), Positives = 21/54 (38%), Gaps = 3/54 (5%)

Query: 8   HPHNHLLHQRYADILYTQGGLENIELAISHYLMAINLNEKNIRALYGLALSCHQ 61
            P     H   A +L  QG    ++ A+ HY  AI ++     A   +  +  +
Sbjct: 335 FPEFAAAHSNLASVLQQQG---KLQEALMHYKEAIRISPTFADAYSNMGNTLKE 385


>d1s4ca1 b.82.2.7 (A:1-143) Hypothetical protein HI0227 {Haemophilus
           influenzae [TaxId: 727]}
          Length = 143

 Score = 24.7 bits (54), Expect = 2.1
 Identities = 12/42 (28%), Positives = 20/42 (47%), Gaps = 2/42 (4%)

Query: 14  LHQRYADILYTQGGLENIELAISHYLMAI--NLNEKNIRALY 53
           LH  Y D+     G ENIE+  ++  ++   + NE +   L 
Sbjct: 64  LHHEYLDVQVLIRGTENIEVGATYPNLSKYEDYNEADDYQLC 105


>d1se8a_ b.40.4.3 (A:) ssDNA-binding protein {Deinococcus
           radiodurans [TaxId: 1299]}
          Length = 231

 Score = 24.5 bits (53), Expect = 3.1
 Identities = 17/90 (18%), Positives = 32/90 (35%), Gaps = 8/90 (8%)

Query: 17  RYADILYTQGGLENIELAISHYLMAINLNEKNIRALYGLALSCHQVLTSAKCSAAKKKEI 76
           R  +I YT  G      A+    +A+N N ++ +      +            A   KE+
Sbjct: 138 RDPEIRYTPAGD-----AVLSLSIAVNENYQDRQGQRQEKVHYIDATLWRDL-AENMKEL 191

Query: 77  SK-QMMWVSKHL-ARQYEEQQGNTETLTEL 104
            K   + +   L    + ++ GN    T +
Sbjct: 192 RKGDPVMIMGRLVNEGWTDKDGNKRNSTRV 221


>d2o5ha1 d.363.1.1 (A:1-131) Hypothetical protein NMB0513
          {Neisseria meningitidis [TaxId: 487]}
          Length = 131

 Score = 23.3 bits (50), Expect = 7.2
 Identities = 7/13 (53%), Positives = 9/13 (69%)

Query: 11 NHLLHQRYADILY 23
          NH +H+RY D L 
Sbjct: 6  NHDVHKRYQDRLE 18


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.318    0.128    0.367 

Gapped
Lambda     K      H
   0.267   0.0606    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 385,723
Number of extensions: 14644
Number of successful extensions: 41
Number of sequences better than 10.0: 1
Number of HSP's gapped: 41
Number of HSP's successfully gapped: 10
Length of query: 111
Length of database: 2,407,596
Length adjustment: 70
Effective length of query: 41
Effective length of database: 1,446,496
Effective search space: 59306336
Effective search space used: 59306336
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 47 (22.1 bits)