Query psy14213
Match_columns 302
No_of_seqs 237 out of 1730
Neff 8.8
Searched_HMMs 46136
Date Fri Aug 16 22:19:47 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy14213.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/14213hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1304|consensus 100.0 2.4E-42 5.2E-47 316.9 20.6 210 69-295 240-449 (449)
2 PLN03074 auxin influx permease 100.0 3.2E-32 7E-37 258.4 21.1 207 75-301 238-457 (473)
3 PTZ00206 amino acid transporte 100.0 7.8E-33 1.7E-37 263.2 13.0 207 72-296 258-465 (467)
4 KOG1303|consensus 100.0 6.2E-30 1.3E-34 238.3 16.3 204 84-297 232-436 (437)
5 PF01490 Aa_trans: Transmembra 100.0 6.2E-31 1.3E-35 246.6 3.3 213 69-292 191-408 (409)
6 KOG4303|consensus 99.9 1.9E-27 4.2E-32 208.1 4.1 202 90-301 312-520 (524)
7 KOG1305|consensus 99.9 8.7E-25 1.9E-29 202.8 15.8 208 81-298 195-408 (411)
8 COG0814 SdaC Amino acid permea 99.3 4.2E-11 9.1E-16 112.6 12.4 198 84-291 197-411 (415)
9 KOG1304|consensus 99.1 4.4E-11 9.6E-16 111.0 5.0 76 7-84 373-448 (449)
10 TIGR00837 araaP aromatic amino 98.5 6.7E-07 1.5E-11 83.4 10.6 156 92-259 190-360 (381)
11 PLN03074 auxin influx permease 98.4 5.3E-07 1.2E-11 86.3 6.4 83 8-90 363-456 (473)
12 PF03222 Trp_Tyr_perm: Tryptop 98.0 0.00022 4.7E-09 66.9 14.7 168 71-260 185-367 (394)
13 PRK10483 tryptophan permease; 97.7 0.00074 1.6E-08 63.4 13.6 163 83-258 195-373 (414)
14 PRK15132 tyrosine transporter 97.7 0.00068 1.5E-08 63.6 12.3 192 82-286 183-390 (403)
15 PTZ00206 amino acid transporte 97.6 1.6E-05 3.6E-10 76.1 1.2 75 8-86 389-465 (467)
16 PRK13629 threonine/serine tran 97.4 0.0024 5.1E-08 60.3 12.1 201 81-289 210-440 (443)
17 TIGR03813 put_Glu_GABA_T putat 97.3 0.0092 2E-07 57.4 15.7 46 80-138 204-250 (474)
18 PRK09664 tryptophan permease T 97.3 0.0047 1E-07 58.0 13.1 164 82-258 195-374 (415)
19 TIGR00814 stp serine transport 97.2 0.0011 2.4E-08 62.2 7.9 192 82-281 188-396 (397)
20 PRK10197 gamma-aminobutyrate t 97.0 0.011 2.5E-07 56.3 12.6 170 71-258 182-368 (446)
21 TIGR03810 arg_ornith_anti argi 97.0 0.056 1.2E-06 51.9 17.1 165 78-259 203-381 (468)
22 PRK10655 potE putrescine trans 97.0 0.064 1.4E-06 50.9 17.3 48 77-137 196-244 (438)
23 PRK10249 phenylalanine transpo 97.0 0.012 2.6E-07 56.4 12.2 167 73-257 212-394 (458)
24 PRK10746 putative transport pr 96.8 0.029 6.3E-07 53.8 13.7 175 71-260 201-390 (461)
25 PRK11021 putative transporter; 96.6 0.19 4E-06 47.3 17.5 52 72-136 179-231 (410)
26 PRK10238 aromatic amino acid t 96.6 0.043 9.3E-07 52.5 13.0 168 74-259 204-387 (456)
27 TIGR00909 2A0306 amino acid tr 96.5 0.091 2E-06 49.7 14.8 164 76-259 201-377 (429)
28 PRK15049 L-asparagine permease 96.5 0.069 1.5E-06 51.8 13.8 163 78-258 228-406 (499)
29 PRK10644 arginine:agmatin anti 96.5 0.13 2.7E-06 49.1 15.4 46 78-136 199-245 (445)
30 PRK11049 D-alanine/D-serine/gl 96.4 0.068 1.5E-06 51.3 13.5 52 74-138 215-267 (469)
31 TIGR00907 2A0304 amino acid pe 96.4 0.13 2.8E-06 49.6 15.2 33 97-132 234-267 (482)
32 PF13520 AA_permease_2: Amino 96.3 0.048 1E-06 51.4 11.5 168 74-260 192-377 (426)
33 COG0531 PotE Amino acid transp 96.1 0.15 3.3E-06 48.4 14.0 170 71-259 202-390 (466)
34 PRK11387 S-methylmethionine tr 96.1 0.12 2.7E-06 49.6 13.3 46 79-137 215-261 (471)
35 PRK11357 frlA putative fructos 96.1 0.18 4E-06 47.9 14.2 48 76-136 201-249 (445)
36 KOG1287|consensus 95.8 0.2 4.4E-06 47.7 12.8 175 69-260 203-388 (479)
37 PRK10435 cadB lysine/cadaverin 95.8 0.65 1.4E-05 44.1 16.6 50 76-138 193-243 (435)
38 TIGR01773 GABAperm gamma-amino 95.7 0.25 5.3E-06 47.2 13.5 54 72-138 203-257 (452)
39 PRK10580 proY putative proline 95.7 0.24 5.3E-06 47.3 13.5 48 76-136 205-253 (457)
40 TIGR00906 2A0303 cationic amin 95.7 0.2 4.3E-06 49.3 12.9 163 76-258 237-411 (557)
41 TIGR00905 2A0302 transporter, 95.7 0.56 1.2E-05 45.1 15.7 49 77-138 206-254 (473)
42 TIGR00913 2A0310 amino acid pe 95.6 0.41 8.9E-06 46.0 14.6 49 75-136 202-251 (478)
43 TIGR00908 2A0305 ethanolamine 95.5 0.46 1E-05 45.1 14.5 44 79-135 200-244 (442)
44 PRK10836 lysine transporter; P 95.2 0.59 1.3E-05 45.1 14.3 46 80-138 215-261 (489)
45 PRK15238 inner membrane transp 95.0 0.8 1.7E-05 44.3 14.4 45 79-136 220-265 (496)
46 TIGR00910 2A0307_GadC glutamat 94.9 0.96 2.1E-05 44.0 14.7 35 97-134 211-246 (507)
47 PF01490 Aa_trans: Transmembra 94.5 0.028 6E-07 52.6 3.0 72 8-80 334-406 (409)
48 TIGR00911 2A0308 L-type amino 94.3 0.7 1.5E-05 44.7 12.3 53 72-137 237-290 (501)
49 TIGR00930 2a30 K-Cl cotranspor 93.7 1.9 4E-05 45.3 14.6 52 72-136 282-334 (953)
50 TIGR03428 ureacarb_perm permea 93.7 2.5 5.4E-05 40.6 14.7 36 97-135 230-266 (475)
51 COG1914 MntH Mn2+ and Fe2+ tra 89.1 14 0.00031 34.9 13.9 78 203-280 323-400 (416)
52 KOG4303|consensus 87.2 0.35 7.5E-06 44.1 1.7 77 7-89 441-518 (524)
53 PF00324 AA_permease: Amino ac 85.1 1.3 2.9E-05 42.5 4.7 59 71-142 201-260 (478)
54 TIGR00912 2A0309 spore germina 83.7 6.3 0.00014 36.2 8.5 145 98-258 197-354 (359)
55 KOG1303|consensus 83.2 1.3 2.8E-05 42.2 3.7 37 8-44 361-397 (437)
56 COG1457 CodB Purine-cytosine p 77.3 52 0.0011 31.4 12.2 142 98-254 212-358 (442)
57 TIGR00813 sss transporter, SSS 67.8 52 0.0011 30.8 10.0 33 107-142 230-265 (407)
58 KOG1305|consensus 64.0 6.1 0.00013 37.4 2.9 34 8-41 335-368 (411)
59 TIGR00800 ncs1 NCS1 nucleoside 61.5 1E+02 0.0023 29.2 10.9 46 97-145 225-274 (442)
60 PF07981 Plasmod_MYXSPDY: Plas 60.7 3.9 8.4E-05 19.6 0.5 11 1-11 1-11 (17)
61 COG1113 AnsP Gamma-aminobutyra 55.3 1.3E+02 0.0029 28.8 10.0 52 205-258 336-389 (462)
62 KOG4812|consensus 52.1 31 0.00068 29.8 4.9 78 211-292 159-245 (262)
63 PRK09442 panF sodium/panthothe 48.7 2.5E+02 0.0055 26.9 13.5 29 106-137 263-291 (483)
64 PF00474 SSF: Sodium:solute sy 46.4 90 0.0019 29.1 7.7 46 211-258 347-392 (406)
65 PF01102 Glycophorin_A: Glycop 45.7 43 0.00093 25.9 4.4 29 273-301 65-93 (122)
66 PF05805 L6_membrane: L6 membr 44.2 55 0.0012 27.5 5.1 68 229-297 44-117 (195)
67 KOG1286|consensus 43.3 1.5E+02 0.0033 29.3 8.9 172 71-258 233-423 (554)
68 TIGR00796 livcs branched-chain 42.7 2.9E+02 0.0063 25.9 10.6 25 227-255 323-347 (378)
69 PF12794 MscS_TM: Mechanosensi 40.0 3E+02 0.0065 25.2 12.7 36 118-153 49-84 (340)
70 PRK12488 acetate permease; Pro 38.2 4E+02 0.0087 26.2 13.3 48 210-259 408-455 (549)
71 TIGR02358 thia_cytX probable h 37.5 3.4E+02 0.0075 25.2 13.1 128 100-246 193-322 (386)
72 PF07954 DUF1689: Protein of u 34.5 1.5E+02 0.0032 23.9 6.0 61 233-297 33-93 (152)
73 PRK11026 ftsX cell division AB 34.1 2.8E+02 0.006 25.1 8.5 28 274-301 281-308 (309)
74 KOG2082|consensus 33.6 5.1E+02 0.011 26.9 10.5 166 102-283 432-617 (1075)
75 KOG1289|consensus 33.3 4.9E+02 0.011 25.7 11.8 34 225-258 410-444 (550)
76 PRK00701 manganese transport p 33.2 4.4E+02 0.0095 25.2 16.1 44 204-251 346-391 (439)
77 PRK11281 hypothetical protein; 32.6 6.9E+02 0.015 27.2 14.3 26 118-143 545-570 (1113)
78 cd08766 Cyt_b561_ACYB-1_like P 31.2 2.7E+02 0.0059 22.1 8.4 63 118-182 42-104 (144)
79 TIGR02119 panF sodium/pantothe 30.3 4.9E+02 0.011 24.8 14.2 30 106-138 262-291 (471)
80 PRK13183 psbN photosystem II r 29.4 76 0.0017 19.9 2.8 27 118-144 7-33 (46)
81 PRK04949 putative sulfate tran 28.5 4E+02 0.0088 23.3 11.3 62 104-170 19-81 (251)
82 PF02468 PsbN: Photosystem II 28.4 78 0.0017 19.6 2.7 27 119-145 5-31 (43)
83 CHL00020 psbN photosystem II p 26.7 73 0.0016 19.7 2.3 27 118-144 4-30 (43)
84 COG4682 Predicted membrane pro 25.7 3.2E+02 0.0068 21.1 6.6 60 235-294 41-100 (128)
85 PRK11375 allantoin permease; P 25.6 6.2E+02 0.013 24.5 13.1 20 228-247 373-392 (484)
86 PF08802 CytB6-F_Fe-S: Cytochr 24.4 1.6E+02 0.0034 17.9 3.4 27 15-41 3-33 (39)
87 TIGR00439 ftsX putative protei 24.1 5.4E+02 0.012 23.2 8.6 28 274-301 281-308 (309)
88 PRK12768 CysZ-like protein; Re 20.7 5.7E+02 0.012 22.2 10.0 27 104-134 10-36 (240)
89 PRK11383 hypothetical protein; 20.0 4.6E+02 0.0099 20.9 8.0 60 232-291 38-97 (145)
No 1
>KOG1304|consensus
Probab=100.00 E-value=2.4e-42 Score=316.92 Aligned_cols=210 Identities=39% Similarity=0.730 Sum_probs=198.7
Q ss_pred hhHHHHHHHHHHHHHHhhhhhhccCCCceEEEeecccccCccccccccchhhhHHHHHHHHHHHHHhhhheecCCccccc
Q psy14213 69 FGLFVMVSGTVISLMDIFTAIQEDFHPKTQIVKIEHHMREPKKFRQPIGVFNVGIVLTALLFAITGMCGYMKYGTAAQGS 148 (302)
Q Consensus 69 ~~~~~~~~Gt~~~~~~~~~~~~~~~~~~~~~~~i~~~M~~p~~~~~~~~v~~~s~~~~~~~y~~~g~~GY~~fG~~~~~~ 148 (302)
++.+++++||..+++|++ ++++|+||+||||++|+.+.++++.+|.+++++|+.+|++||++|||+++++
T Consensus 240 ~~~~~lf~GtaifafEGi----------g~VLPlEn~Mk~P~~F~g~~gVLn~~M~~V~~ly~~~Gf~GYl~fG~~v~~s 309 (449)
T KOG1304|consen 240 WSGLPLFFGTAIFAFEGI----------GMVLPLENSMKKPQKFPGPFGVLNLGMGIVTLLYIFLGFFGYLAFGDDVKGS 309 (449)
T ss_pred hhhhHHHHHHHHHHhccc----------eEEEehhhcccChhhcCCccchHHHHHHHHHHHHHHHHHHHHhhccccccce
Confidence 678999999999999999 9999999999999999988889999999999999999999999999999999
Q ss_pred hhcccccCchHHHHHHHHHHHHHHHhhhcchhcHHHHHHHhhhhhccccccccchhhhhhhhHHHHHHHHHHHHHhcCch
Q psy14213 149 MTLNIAEDQIMAQIVKLLYAFVIFFSYPLQNFVPLELLWMNYIKQHMVEYSEKKKLIVEYVFREVIVLITWAFALVIPHL 228 (302)
Q Consensus 149 il~n~p~~~~~~~~~~~~~~l~~~~sypL~~~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~iA~~iP~~ 228 (302)
|++|+|+ +++.+.+|+++++++++|||||++|+.|++|+. +++|..+ ++++|..+.+|..+++++..+|.++||+
T Consensus 310 ITLNLP~-~~l~~~Vkl~~ai~I~ls~pLQ~yv~~eIi~~~-i~~k~~~---~~~~~~~~~~R~~lVllt~~iA~~iPnL 384 (449)
T KOG1304|consen 310 ITLNLPQ-EILSQTVKLLLAIAIFLTYPLQFYVPIEIIEPG-IRKKFSE---NRKKLLEYALRVFLVLLTFLIAVAVPNL 384 (449)
T ss_pred EEecCCc-cHHHHHHHHHHHHHHHHcCchhhhhhHHHHHHh-HHHhcCc---chhHHHHHHHHHHHHHHHHHHHHHCCcH
Confidence 9999996 999999999999999999999999999999998 8877742 4578899999999999999999999999
Q ss_pred hHHHHHhhhHHhhhHHHHhhHHHHHHHhccccccCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14213 229 DLLISLFGAFCLASLGIIFPAAIHILVLRHEKVSFGPLGWILIKDIALIVFGIFIMVSGTVISIMDI 295 (302)
Q Consensus 229 ~~v~~lvGs~~~~~l~fi~P~l~~l~~~~~~~~~~~~~~~~~~~~~~ii~~G~~~~v~Gt~~si~~i 295 (302)
+.+++|+||++++.+++++|+++|++.++++. .+..+|+.+.|.+++++|+++++.|||++++++
T Consensus 385 ~~fisLVGs~~~s~L~li~P~liel~~~~~~~--~~~~~~~~~~ni~l~~~G~~~~v~Gty~si~~i 449 (449)
T KOG1304|consen 385 ALFISLVGSVSCSLLALIFPPLIELITFYPEG--KGRFMWKLIKNIVLIVFGVFGFVYGTYTSIKEI 449 (449)
T ss_pred HhhHHHHHHHHHHHHHHHccHHHHHHHhcccc--cCceehHHHHHHHHHHHHHHHHHHHHhhhhhcC
Confidence 99999999999999999999999999999875 256679999999999999999999999999874
No 2
>PLN03074 auxin influx permease; Provisional
Probab=100.00 E-value=3.2e-32 Score=258.35 Aligned_cols=207 Identities=15% Similarity=0.214 Sum_probs=174.8
Q ss_pred HHHHHHHHHHhhhhhhccCCCceEEEeecccccCccccccccchhhhHHHHHHHHHHHHHhhhheecCCcccc--chhcc
Q psy14213 75 VSGTVISLMDIFTAIQEDFHPKTQIVKIEHHMREPKKFRQPIGVFNVGIVLTALLFAITGMCGYMKYGTAAQG--SMTLN 152 (302)
Q Consensus 75 ~~Gt~~~~~~~~~~~~~~~~~~~~~~~i~~~M~~p~~~~~~~~v~~~s~~~~~~~y~~~g~~GY~~fG~~~~~--~il~n 152 (302)
.+++..+++++| +++||+|+|||||++|++ +...++..+...|..+|+.||+.|||++++ +.+.|
T Consensus 238 ~~~~i~faf~g~----------~v~~~I~~~M~~P~~F~~---~~~l~~~~v~~~y~~~~~~gY~~fG~~~~~~s~~l~~ 304 (473)
T PLN03074 238 GATNILYTFGGH----------AVTVEIMHAMWKPQKFKY---IYLAATLYVLTLTLPSAAAVYWAFGDELLTHSNAFSL 304 (473)
T ss_pred HHHHHHHHhccc----------ccHHHHHHhccChhcccc---hHHHHHHHHHHHHHHHHHeeeeeechhhhhchhHHhc
Confidence 344577888888 999999999999999998 888999999999999999999999999764 45667
Q ss_pred cccCchHHHHHHHHHHHHHHHhhhcchhcHHHHHHHhhhhhccccccccchhhhhhhhHHHHHHHHHHHHHhcCchhHHH
Q psy14213 153 IAEDQIMAQIVKLLYAFVIFFSYPLQNFVPLELLWMNYIKQHMVEYSEKKKLIVEYVFREVIVLITWAFALVIPHLDLLI 232 (302)
Q Consensus 153 ~p~~~~~~~~~~~~~~l~~~~sypL~~~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~iA~~iP~~~~v~ 232 (302)
+|+ +.+.+++++++.++++.+||+++.|..+..|+. .+.+ +++..+.|.++|+.+++.++++|..+|+|++++
T Consensus 305 lp~-~~~~~~~~~~~~i~~~~sy~l~~~p~~~~~e~~-~~~~-----~~k~~~~r~~~R~~lv~~~~~iA~~IP~fg~ll 377 (473)
T PLN03074 305 LPR-SGWRDAAVILMLIHQFITFGFACTPLYFVWEKA-IGVH-----DTKSICLRALARLPVVVPIWFLAIIFPFFGPIN 377 (473)
T ss_pred CCC-chHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHH-hccc-----ccccHHHHHHHHHHHHHHHHHHHHHccchHHHH
Confidence 884 456789999999999999999999998888776 4432 134567889999999999999999999999999
Q ss_pred HHhhhHHhhhHHHHhhHHHHHHHhcccccc----------CCcchHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHhcC
Q psy14213 233 SLFGAFCLASLGIIFPAAIHILVLRHEKVS----------FGPLGWILIKDIALIVF-GIFIMVSGTVISIMDIFTAIAG 301 (302)
Q Consensus 233 ~lvGs~~~~~l~fi~P~l~~l~~~~~~~~~----------~~~~~~~~~~~~~ii~~-G~~~~v~Gt~~si~~ii~~~~~ 301 (302)
+|+||++++++++++|+++|++.++++.++ .+..+|..++|++++++ |+++.+.|+|.+++++++++++
T Consensus 378 sLvGs~~~s~l~~i~P~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~iiv~~~~~g~~~G~~asi~~ii~~~~~ 457 (473)
T PLN03074 378 SAVGALLVSFTVYIIPSLAHMLTYRSASARQNAAEKPPFFLPSWTGMYVVNAFVVVWVLVVGFGFGGWASMTNFVRQIDT 457 (473)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcchhhhhhcccCCcccCCccceehhhhhHHHHhhhhHhhccchHHHHHHHHHhhhh
Confidence 999999999999999999999977654211 11223457999999986 6666799999999999999875
No 3
>PTZ00206 amino acid transporter; Provisional
Probab=100.00 E-value=7.8e-33 Score=263.23 Aligned_cols=207 Identities=16% Similarity=0.211 Sum_probs=172.2
Q ss_pred HHHHHHHHHHHHHhhhhhhccCCCceEEEeecccccCccccccccchhhhHHHHHHHHHHHHHhhhheecCCccccchhc
Q psy14213 72 FVMVSGTVISLMDIFTAIQEDFHPKTQIVKIEHHMREPKKFRQPIGVFNVGIVLTALLFAITGMCGYMKYGTAAQGSMTL 151 (302)
Q Consensus 72 ~~~~~Gt~~~~~~~~~~~~~~~~~~~~~~~i~~~M~~p~~~~~~~~v~~~s~~~~~~~y~~~g~~GY~~fG~~~~~~il~ 151 (302)
....+|+..++|++| .+.+|+|+|||||+. +++.+++..++.++.++|..+|++||++|||+++++++.
T Consensus 258 ~~~algi~~faF~~h----------~~~~~i~~~M~~~t~-~~~~~v~~~s~~i~~~lY~~~G~~GYl~fG~~v~~~Ill 326 (467)
T PTZ00206 258 AIEGLGVFIFAYVFQ----------ITAYEVYMDMTNRSV-GKFVLASTIAMGMCFTMYVLTAFFGYMDFGRNVTGSVLL 326 (467)
T ss_pred HHhhhhHHHhhhhhh----------hhhHHHHHhhcccch-hHHHHHHHHHHHHHHHHHHHHHHhhhhccccccchHHHH
Confidence 445566666666666 999999999998653 333338999999999999999999999999999999999
Q ss_pred cc-ccCchHHHHHHHHHHHHHHHhhhcchhcHHHHHHHhhhhhccccccccchhhhhhhhHHHHHHHHHHHHHhcCchhH
Q psy14213 152 NI-AEDQIMAQIVKLLYAFVIFFSYPLQNFVPLELLWMNYIKQHMVEYSEKKKLIVEYVFREVIVLITWAFALVIPHLDL 230 (302)
Q Consensus 152 n~-p~~~~~~~~~~~~~~l~~~~sypL~~~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~iA~~iP~~~~ 230 (302)
|+ |.+++...++++++.++++++||++.+|+|+.+++. +.++. ++.+.|+|...+..+++.++++|+++|+++.
T Consensus 327 n~~p~~~~~~~v~~~~~~~~v~~sypL~~~p~r~~i~~~-~~~~~----~~~~~~~~~~~~~~l~~~~l~iAi~vP~l~~ 401 (467)
T PTZ00206 327 MYDPVNEPAIMVGFVGVLVKLFVSYALLGMACRNALYDV-IGWDA----RKVAFWKHCIAVVTLSVVMLLCGLFIPKINT 401 (467)
T ss_pred hCCCCCCchhhHHHHHHHHHHHHhhhhhhhhHHHHHHHH-hCCCc----ccCchhhHHHHHHHHHHHHHHHHhccCCHHH
Confidence 99 566788899999999999999999999999999887 54332 1334567777777888889999999999999
Q ss_pred HHHHhhhHHhhhHHHHhhHHHHHHHhccccccCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14213 231 LISLFGAFCLASLGIIFPAAIHILVLRHEKVSFGPLGWILIKDIALIVFGIFIMVSGTVISIMDIF 296 (302)
Q Consensus 231 v~~lvGs~~~~~l~fi~P~l~~l~~~~~~~~~~~~~~~~~~~~~~ii~~G~~~~v~Gt~~si~~ii 296 (302)
+++|+||++++.++|++|+++|++....+.+ +..+++...+++++++|+++.+.|||+++++.+
T Consensus 402 vl~lvGa~~~~~l~fi~P~lf~l~~~~~~~~--~~~~~~~~~~~~lli~Gv~~~v~Gt~~si~~~~ 465 (467)
T PTZ00206 402 VLGFAGSISGGLLGFILPALLFMYSGGFTWQ--KVGPFYYISTYVVLITGVIAIVFGTGATIWGVT 465 (467)
T ss_pred hhhhhhHHHHHHHHHHHHHHHHHhcCCccHH--hhchHHHHHHHHHHHHHhheEEecchhHhhHHh
Confidence 9999999999999999999999984211111 122345689999999999999999999999875
No 4
>KOG1303|consensus
Probab=99.97 E-value=6.2e-30 Score=238.28 Aligned_cols=204 Identities=20% Similarity=0.418 Sum_probs=172.8
Q ss_pred HhhhhhhccCCCceEEEeecccccCccccccccchhhhHHHHHHHHHHHHHhhhheecCCccccchhcccccCchHHHHH
Q psy14213 84 DIFTAIQEDFHPKTQIVKIEHHMREPKKFRQPIGVFNVGIVLTALLFAITGMCGYMKYGTAAQGSMTLNIAEDQIMAQIV 163 (302)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~i~~~M~~p~~~~~~~~v~~~s~~~~~~~y~~~g~~GY~~fG~~~~~~il~n~p~~~~~~~~~ 163 (302)
.+...+.++|.+|+++||||++||+|++|+| ++..++.+++.+|..+++.||++|||+++|+++.|++++.++...+
T Consensus 232 ~a~g~iaFaf~gH~v~peIq~tMk~p~~f~~---~~lis~~~~~~~y~~vai~GY~aFG~~~~~~il~s~~~p~~~~~~a 308 (437)
T KOG1303|consen 232 TALGIIAFAYGGHAVLPEIQHTMKSPPKFKK---ALLISYIIVTFLYFPVAIIGYWAFGDSVPDNILLSLQPPTWLIALA 308 (437)
T ss_pred hhhhheeeeecCCeeeeehHhhcCCchhhhh---HHHHHHHHHHHHHHHHHHhhhhhhccccchhhhhcccCchhHHHHH
Confidence 3444444555555999999999999999988 9999999999999999999999999999999999996457999999
Q ss_pred HHHHHHHHHHhhhcchhcHHHHHHHhhhhhccccccccchhhhhhhhHHHHHHHHHHHHHhcCchhHHHHHhhhHHhhhH
Q psy14213 164 KLLYAFVIFFSYPLQNFVPLELLWMNYIKQHMVEYSEKKKLIVEYVFREVIVLITWAFALVIPHLDLLISLFGAFCLASL 243 (302)
Q Consensus 164 ~~~~~l~~~~sypL~~~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~iA~~iP~~~~v~~lvGs~~~~~l 243 (302)
++++.+|++.+|+....|..+.+|+. .+.+.++. .++..+.|.+.|+.+++.++++|+.+|+|+++++++||+...++
T Consensus 309 ni~i~~h~i~s~~i~a~pl~~~~E~~-~~~~~~~~-~~~~~~~R~~~Rt~~v~~~~~vA~~~PfFg~l~~lvGa~~~~p~ 386 (437)
T KOG1303|consen 309 NILIVLHLIGSYQIYAQPLFDVVEKL-IGVKHPDF-KKRSLVLRLLVRTFFVAVTTFVALSFPFFGDLLSLVGAFLFWPL 386 (437)
T ss_pred HHHHHHHHhhhhhhhhcchHHHHHHH-hccCCccc-cccccceeeehhhHHHHHHHHHHHhccccHhHHHHHHHHHHHHH
Confidence 99999999999999999999999998 55433111 11345789999999999999999999999999999999999999
Q ss_pred HHHhhHHHHHHHhccccccCCcchHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHH
Q psy14213 244 GIIFPAAIHILVLRHEKVSFGPLGWILIKDIAL-IVFGIFIMVSGTVISIMDIFT 297 (302)
Q Consensus 244 ~fi~P~l~~l~~~~~~~~~~~~~~~~~~~~~~i-i~~G~~~~v~Gt~~si~~ii~ 297 (302)
++++|+++|++.++.++ .+ .+| ..++.+ +++|++.++....+++++++.
T Consensus 387 t~ilP~~~yl~~~k~~~--~s-~~~--~~~~~~~~~~~~~~~v~~~~~~~~~li~ 436 (437)
T KOG1303|consen 387 TFILPCLMYLLIKKPKR--FS-PKW--LLNWVIILVVGLLLSVLAAVGGVRSLII 436 (437)
T ss_pred HHHHHHHHHHHhhhhhh--hh-HHH--HHHHHhhhhhhhhHHHHHHHHHHHHHhh
Confidence 99999999999977654 22 233 555566 788888888888888888764
No 5
>PF01490 Aa_trans: Transmembrane amino acid transporter protein; InterPro: IPR013057 This transmembrane region is found in many amino acid transporters including P34579 from SWISSPROT (UNC-47) and P40501 from SWISSPROT (MTR). UNC-47 encodes a vesicular amino butyric acid (GABA) transporter, (VGAT) and is is predicted to have 10 transmembrane domains UNC47_CAEEL []. MTR is an N system amino acid transporter system protein involved in methyltryptophan resistance MTR_NEUCR. Other members of this family include proline transporters and amino acid transporters whose specificity has not yet been identified.
Probab=99.96 E-value=6.2e-31 Score=246.65 Aligned_cols=213 Identities=26% Similarity=0.510 Sum_probs=182.6
Q ss_pred hhHHHHHHHHHHHHHHhhhhhhccCCCceEEEeecccccCccccccccchhhhHHHHHHHHHHHHHhhhheecCCccccc
Q psy14213 69 FGLFVMVSGTVISLMDIFTAIQEDFHPKTQIVKIEHHMREPKKFRQPIGVFNVGIVLTALLFAITGMCGYMKYGTAAQGS 148 (302)
Q Consensus 69 ~~~~~~~~Gt~~~~~~~~~~~~~~~~~~~~~~~i~~~M~~p~~~~~~~~v~~~s~~~~~~~y~~~g~~GY~~fG~~~~~~ 148 (302)
+......+|+..+++.+| +++||+++|||||++++|++++...++.+++++|..+|.+||++|||+++++
T Consensus 191 ~~~~~~~~~i~~faf~~~----------~~~~~i~~~m~~~~~~~~~~~~~~~s~~~~~~~y~~~g~~gy~~fg~~~~~~ 260 (409)
T PF01490_consen 191 FSGFFSAFGIIIFAFSCH----------PNLPPIQSEMKDPSKFKKMKKVLSISMIICFIIYLLFGIFGYLAFGDSVQGN 260 (409)
T ss_pred hhHHHHhhhhhhhhhhcc----------cccceeeeeccCCccccccceeeeehhhhhhHHhhhhhhcccceeeeeecch
Confidence 346677778888888888 9999999999999998866669999999999999999999999999999999
Q ss_pred hhcccccCchHHHHHHHHHHHHHHHhhhcchhcHHHHHHHhhhhhc-----cccccccchhhhhhhhHHHHHHHHHHHHH
Q psy14213 149 MTLNIAEDQIMAQIVKLLYAFVIFFSYPLQNFVPLELLWMNYIKQH-----MVEYSEKKKLIVEYVFREVIVLITWAFAL 223 (302)
Q Consensus 149 il~n~p~~~~~~~~~~~~~~l~~~~sypL~~~p~~~~l~~~~~~~~-----~~~~~~~~~~~~~~~~r~~~~~~~~~iA~ 223 (302)
+++|+|++++...++++++.++++.+||++.+|.++.+++. +.++ .....++.++++|..+|+.++..+.++|+
T Consensus 261 il~n~~~~~~~~~i~~~~~~i~~~~s~pl~~~p~~~~l~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iA~ 339 (409)
T PF01490_consen 261 ILLNLPNDDVLIIIARILLVISLLLSYPLQLFPARNSLENL-LFKRAASSRDSPKNTPSSRWLRYLIRIILVLLSFLIAI 339 (409)
T ss_pred hhhcCCCcccccccccccchhhhhhccccccchhHhhhhhh-eeccccccccccccccccceeeeeeecchhhhhhhhhh
Confidence 99999977789999999999999999999999999999998 5432 00000134568899999999999999999
Q ss_pred hcCchhHHHHHhhhHHhhhHHHHhhHHHHHHHhccccccCCcchHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14213 224 VIPHLDLLISLFGAFCLASLGIIFPAAIHILVLRHEKVSFGPLGWILIKDIALIVFGIFIMVSGTVISI 292 (302)
Q Consensus 224 ~iP~~~~v~~lvGs~~~~~l~fi~P~l~~l~~~~~~~~~~~~~~~~~~~~~~ii~~G~~~~v~Gt~~si 292 (302)
.+||++++++++||++++.++|++|+++|++.+++++++.++...+...++.++++|++.++.|+|+++
T Consensus 340 ~vp~~~~i~~l~Ga~~~~~i~fi~P~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~i 408 (409)
T PF01490_consen 340 FVPNFGDIISLVGALFGSFISFILPALLYLKLFKRKRNSFGWWWILSILNWIIIVFGVVLMVFGTYQSI 408 (409)
T ss_pred hccchhhhhcccchHHHHhHHHHHHHHHHHHhhcccccccceeehhhccceEEEEEeeehhHHhHHHHc
Confidence 999999999999999999999999999999998876521111111236688999999999999999876
No 6
>KOG4303|consensus
Probab=99.93 E-value=1.9e-27 Score=208.12 Aligned_cols=202 Identities=24% Similarity=0.409 Sum_probs=177.6
Q ss_pred hccCCCceEEEeecccccCccccccccchhhhHHHHHHHHHHHHHhhhheecCCccccchhcccccCchHHHHHHHHHHH
Q psy14213 90 QEDFHPKTQIVKIEHHMREPKKFRQPIGVFNVGIVLTALLFAITGMCGYMKYGTAAQGSMTLNIAEDQIMAQIVKLLYAF 169 (302)
Q Consensus 90 ~~~~~~~~~~~~i~~~M~~p~~~~~~~~v~~~s~~~~~~~y~~~g~~GY~~fG~~~~~~il~n~p~~~~~~~~~~~~~~l 169 (302)
.+.|++|...|+++.+|++|++|.- .+.++-+...++-..+|..||++|||.+++.|++|+| +.....++++++.+
T Consensus 312 VFsYTSqIFLP~LEGNM~~ps~Fn~---Ml~WsHIAAaVfK~~Fg~~~fLTf~~~TqevItnnLp-~qsfk~~VN~fLV~ 387 (524)
T KOG4303|consen 312 VFSYTSQIFLPNLEGNMKNPSQFNV---MLKWSHIAAAVFKVVFGMLGFLTFGELTQEVITNNLP-NQSFKILVNLFLVV 387 (524)
T ss_pred EEeeeceeeccccccccCChhHhee---eeehHHHHHHHHHHHHHHheeeeechhhHHHHhcCCC-ccchhhhhhHHHHH
Confidence 4567778999999999999999988 8999999999999999999999999999999999999 46778899999999
Q ss_pred HHHHhhhcchhcHHHHHHHhhhhhcccc------ccc-cchhhhhhhhHHHHHHHHHHHHHhcCchhHHHHHhhhHHhhh
Q psy14213 170 VIFFSYPLQNFVPLELLWMNYIKQHMVE------YSE-KKKLIVEYVFREVIVLITWAFALVIPHLDLLISLFGAFCLAS 242 (302)
Q Consensus 170 ~~~~sypL~~~p~~~~l~~~~~~~~~~~------~~~-~~~~~~~~~~r~~~~~~~~~iA~~iP~~~~v~~lvGs~~~~~ 242 (302)
..++||||-++.+.+.+|+. +....++ +++ +.-+-+...+|.++++.+.+.|+.+|+|..+++|+|++.++.
T Consensus 388 KALLSYPLPfyAAvelLe~n-lF~g~p~t~Fpscys~Dg~Lk~WgltlR~~lvvfTllmAi~vPhf~~LMGl~Gs~TGtm 466 (524)
T KOG4303|consen 388 KALLSYPLPFYAAVELLENN-LFLGYPQTPFPSCYSPDGSLKEWGLTLRIILVVFTLLMAISVPHFVELMGLVGSITGTM 466 (524)
T ss_pred HHHHcCCchHHHHHHHHHHh-hhcCCCCCCCceeeCCCcchhhheeeeeeHHHHHHHHHHHHhHHHHHHHHhhccccccc
Confidence 99999999999999999998 3322211 112 122344578999999999999999999999999999999999
Q ss_pred HHHHhhHHHHHHHhccccccCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Q psy14213 243 LGIIFPAAIHILVLRHEKVSFGPLGWILIKDIALIVFGIFIMVSGTVISIMDIFTAIAG 301 (302)
Q Consensus 243 l~fi~P~l~~l~~~~~~~~~~~~~~~~~~~~~~ii~~G~~~~v~Gt~~si~~ii~~~~~ 301 (302)
++|+.|++||+++.++. ....++.++..++++|...++.|.|.+..++++.++.
T Consensus 467 LsFiwP~lFHl~ik~~~-----L~~~e~~fD~~Ii~~G~~~~vsG~y~S~~~Li~A~~~ 520 (524)
T KOG4303|consen 467 LSFIWPALFHLYIKEKT-----LNNFEKRFDQGIIIMGCSVCVSGVYFSSMELIRAINS 520 (524)
T ss_pred HHHHHHHHHHHHHHHHh-----hhhHHHhhheeEEEEeeeEEEEeEehhhHHHHHHHhc
Confidence 99999999999999874 2245789999999999999999999999999998875
No 7
>KOG1305|consensus
Probab=99.92 E-value=8.7e-25 Score=202.81 Aligned_cols=208 Identities=18% Similarity=0.335 Sum_probs=178.8
Q ss_pred HHHHhhhhhhccCCCceEEEeecccccCccccccccchhhhHHHHHHHHHHHHHhhhheecCCccccchhcccccCchH-
Q psy14213 81 SLMDIFTAIQEDFHPKTQIVKIEHHMREPKKFRQPIGVFNVGIVLTALLFAITGMCGYMKYGTAAQGSMTLNIAEDQIM- 159 (302)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~i~~~M~~p~~~~~~~~v~~~s~~~~~~~y~~~g~~GY~~fG~~~~~~il~n~p~~~~~- 159 (302)
..+.....+.++|.||.+..++++|||||++ ++++++...+...+.++|..+|.+||+.|||++.+|++.++|+++..
T Consensus 195 ~~~~~~pi~~faf~Ch~n~~~i~~El~~~s~-~~i~~v~~~~~~~~~~iy~~~g~~GYL~Fg~~v~~n~l~~~~~~~~~~ 273 (411)
T KOG1305|consen 195 SLFYALPIFVFAFTCHSNVFPIYNELKDRSV-KKIQRVSNIAIILATLIYLLTGLFGYLTFGDLVKGNLLHNYDSILNNL 273 (411)
T ss_pred hhhhhhhhhheeeeccccceeeeeeeeCchH-HHHHHHHHHHHHHHHHHHHHHHHhhhheecccchHHHHhcCCcccchh
Confidence 3456677778888888999999999999986 55555999999999999999999999999999999999999865433
Q ss_pred -----HHHHHHHHHHHHHHhhhcchhcHHHHHHHhhhhhccccccccchhhhhhhhHHHHHHHHHHHHHhcCchhHHHHH
Q psy14213 160 -----AQIVKLLYAFVIFFSYPLQNFVPLELLWMNYIKQHMVEYSEKKKLIVEYVFREVIVLITWAFALVIPHLDLLISL 234 (302)
Q Consensus 160 -----~~~~~~~~~l~~~~sypL~~~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~iA~~iP~~~~v~~l 234 (302)
...++..+.++.+.++|++.+|.|+.+++. +.++.+++ ...++.+|.+++..+...+.+.|+.+|++++++++
T Consensus 274 l~~~~~~~vr~~~~~~~~l~~pi~~fPlr~~l~~~-~~~~~~~~-~~~s~~r~~~itl~ll~~~~l~ai~~p~i~~i~~~ 351 (411)
T KOG1305|consen 274 LRSFPLLCVRLRIAVAVLLTFPIVLFPLRMNLDEL-LFPYQPGL-TSFSGKRHFVITLLLLIFTFLLAIFVPSIGTIFGF 351 (411)
T ss_pred HhhhhHHHHHHHHHHHHHHHHHHHhchHHHHHHHH-hcccCCCC-CCccceehhHHHHHHHHHHHHHHHHhccHHHHHHH
Confidence 479999999999999999999999998887 43333211 12456778999999999999999999999999999
Q ss_pred hhhHHhhhHHHHhhHHHHHHHhccccccCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14213 235 FGAFCLASLGIIFPAAIHILVLRHEKVSFGPLGWILIKDIALIVFGIFIMVSGTVISIMDIFTA 298 (302)
Q Consensus 235 vGs~~~~~l~fi~P~l~~l~~~~~~~~~~~~~~~~~~~~~~ii~~G~~~~v~Gt~~si~~ii~~ 298 (302)
+||+++..++|++|+++|++..|+ + .+++...+....+|+...+.|+...+.++..+
T Consensus 352 vGAT~~~~i~FI~P~~~yl~~~~~-~------~~~~~~~~~~~~~~~~~~i~~~~~~i~~~~~~ 408 (411)
T KOG1305|consen 352 VGATSSTSISFILPALYYLKASKK-K------SREPLGALIFLILGVLLSIIGVAVMIYDLLAK 408 (411)
T ss_pred hhhhhhhhhHHHHHHHhhheeecc-c------cccchHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 999999999999999999998875 2 24567888999999999999999999998765
No 8
>COG0814 SdaC Amino acid permeases [Amino acid transport and metabolism]
Probab=99.27 E-value=4.2e-11 Score=112.58 Aligned_cols=198 Identities=18% Similarity=0.220 Sum_probs=139.1
Q ss_pred HhhhhhhccCCCceEEEeecccccCccc--cccccchhhhHHHHHHHHHHHHHhhhheecCCccccchhcccccCchHHH
Q psy14213 84 DIFTAIQEDFHPKTQIVKIEHHMREPKK--FRQPIGVFNVGIVLTALLFAITGMCGYMKYGTAAQGSMTLNIAEDQIMAQ 161 (302)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~i~~~M~~p~~--~~~~~~v~~~s~~~~~~~y~~~g~~GY~~fG~~~~~~il~n~p~~~~~~~ 161 (302)
..+..+.++|++|++++++++||+|+++ .+| +...+..+..++|..+++++|..+|+.+.++++.+.++ +....
T Consensus 197 ~~ipv~vfsF~~h~~i~si~~~~~~~~~~~~~k---~~~~~~~~~~vlyi~~~~~~~~~~~~~~~~~il~~~~~-~~~~l 272 (415)
T COG0814 197 LAIPVFVFSFGFHGNIPSLVNYMRKNSKKAVRK---AILIGSLIALVLYILVGFFVFGCFGSLVFGNILAAKEQ-NISLL 272 (415)
T ss_pred HHhhHHHhhhhCCccchHHHHHhccchhHHHHH---HHHHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHccCc-hHHHH
Confidence 3445555666666999999999998865 566 99999999999999999999999999999999999985 44444
Q ss_pred HHHHHHHHHHHHhhhcchhcHHHHHHHh---h----------hhhccccccccchhhh--hhhhHHHHHHHHHHHHHhcC
Q psy14213 162 IVKLLYAFVIFFSYPLQNFVPLELLWMN---Y----------IKQHMVEYSEKKKLIV--EYVFREVIVLITWAFALVIP 226 (302)
Q Consensus 162 ~~~~~~~l~~~~sypL~~~p~~~~l~~~---~----------~~~~~~~~~~~~~~~~--~~~~r~~~~~~~~~iA~~iP 226 (302)
.++.....+...+++.+.++.+...-.. . .++ .++..+++..+. ...............+...|
T Consensus 273 ~~~~~~~~~~~~~~~~~~f~~~Ai~tSFlgv~lg~~~~~~~~~~~-~~~~~~r~~~~~~~~~~~~i~~l~~~~~~~~~~~ 351 (415)
T COG0814 273 SALAGVINSPILSIALNIFALFAIATSFLGVYLGLFEGLADLFKK-SNSKPGRKKTGLLTFLPPLIFALLYPWGFAIALG 351 (415)
T ss_pred HHHHHhhcchHHHHHHHHHHHHHHHHHHhCchhhHHHhhhHHHHh-ccCcccchhhhhhhHHHHHHHHHHHHHHHHHHhH
Confidence 4444555555577777777777553221 0 111 000001122232 33445555666677888899
Q ss_pred chhHHHHHhhhHHhhhHHHHhhHHHHHHHhccccccCCcchHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14213 227 HLDLLISLFGAFCLASLGIIFPAAIHILVLRHEKVSFGPLGWILIKDIALIVFGIFIMVSGTVIS 291 (302)
Q Consensus 227 ~~~~v~~lvGs~~~~~l~fi~P~l~~l~~~~~~~~~~~~~~~~~~~~~~ii~~G~~~~v~Gt~~s 291 (302)
..+.+++-+|+.....+.++.|...+.+....+. .+ .++..+++++++|+..++.-.++.
T Consensus 352 ~~~~~~~~iga~i~~~ll~~~p~~~~~~~~~~~~--~~---g~~~~~~~v~~~Gi~~~~~~~~~~ 411 (415)
T COG0814 352 YAGGLIATIGAPIIPALLFIKPRKLIYKLPALKV--YG---GNFLLLLLVLLFGILVILSPFLAT 411 (415)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhcCCCCceee--cC---CCchhHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999988877654432 11 112467888888988877765544
No 9
>KOG1304|consensus
Probab=99.13 E-value=4.4e-11 Score=110.98 Aligned_cols=76 Identities=37% Similarity=0.635 Sum_probs=68.6
Q ss_pred chhhhhhhcCChhHHHHHHHHHHHHHhHHHHHHHHHHHHhhccccceeeeeeeeeccchhhhhhHHHHHHHHHHHHHH
Q psy14213 7 YRGAFALVIPHLDLLISLFGAFCLASLGIIFPATIHILVLRHERIGFGFLNWVLFKDIFLIAFGLFVMVSGTVISLMD 84 (302)
Q Consensus 7 ~~~~~a~~iP~l~~~isl~Ga~~~~~L~li~P~~i~i~~~~~~~~g~~~~~~~~~k~i~~~~~~~~~~~~Gt~~~~~~ 84 (302)
.|+++|.++|||++||||+||+|++.|++++|+++|..+.+.+.. +..+|.++||+....+|.++..+||+.+..|
T Consensus 373 lt~~iA~~iPnL~~fisLVGs~~~s~L~li~P~liel~~~~~~~~--~~~~~~~~~ni~l~~~G~~~~v~Gty~si~~ 448 (449)
T KOG1304|consen 373 LTFLIAVAVPNLALFISLVGSVSCSLLALIFPPLIELITFYPEGK--GRFMWKLIKNIVLIVFGVFGFVYGTYTSIKE 448 (449)
T ss_pred HHHHHHHHCCcHHhhHHHHHHHHHHHHHHHccHHHHHHHhccccc--CceehHHHHHHHHHHHHHHHHHHHHhhhhhc
Confidence 378999999999999999999999999999999999998777643 6777888999988889999999999988765
No 10
>TIGR00837 araaP aromatic amino acid transport protein. aromatic amino acid transporters and includes the tyrosine permease, TyrP, of E. coli, and the tryptophan transporters TnaB and Mtr of E. coli.
Probab=98.52 E-value=6.7e-07 Score=83.38 Aligned_cols=156 Identities=14% Similarity=0.133 Sum_probs=108.8
Q ss_pred cCCCceEEEeecccccCc-cccccccchhhhHHHHHHHHHHHHHhhhheecCCccccc-------------hhcccccCc
Q psy14213 92 DFHPKTQIVKIEHHMREP-KKFRQPIGVFNVGIVLTALLFAITGMCGYMKYGTAAQGS-------------MTLNIAEDQ 157 (302)
Q Consensus 92 ~~~~~~~~~~i~~~M~~p-~~~~~~~~v~~~s~~~~~~~y~~~g~~GY~~fG~~~~~~-------------il~n~p~~~ 157 (302)
.|+.|++++++.++++|| |+.+| +...+..+++++|...........+.+.-.+ ...+.-.+.
T Consensus 190 ~fg~~~~i~~~~~~~~~~~k~i~r---aii~g~~i~~~lY~l~~~~~~g~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~ 266 (381)
T TIGR00837 190 SFGFHGNVPSLYKYYDGNVKKVKK---SILIGSAIALVLYILWQLATMGNLPRSEFLPIIAKGGNLDGLVNALQGVLKSS 266 (381)
T ss_pred HHHcccccHHHHHHhccCHHHHHH---HHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHcCCChHHHHHHHHHhccch
Confidence 345557899999999744 56566 9999999999999988665554443221111 111111123
Q ss_pred hHHHHHHHHHHHHHHHhhhcchhcHHHHHHHhhhhhccccccccchhhhhhhhHHHHHHHHHHHHHhcCchh-HHHHHhh
Q psy14213 158 IMAQIVKLLYAFVIFFSYPLQNFVPLELLWMNYIKQHMVEYSEKKKLIVEYVFREVIVLITWAFALVIPHLD-LLISLFG 236 (302)
Q Consensus 158 ~~~~~~~~~~~l~~~~sypL~~~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~iA~~iP~~~-~v~~lvG 236 (302)
+...+...+-.+++..|+.-.....+|.+.+. ++++. ++++ |.....+..+...++|.+.|+.. ..++..|
T Consensus 267 ~~~~~v~~~~~~al~tS~~g~~l~~~d~l~~~-~~~~~----~~~~---~~~~~~~~~~~pl~~a~~~p~~~~~~l~~~G 338 (381)
T TIGR00837 267 AIELALELFSNFALASSFLGVTLGLFDYLADL-FKFDD----SKKG---RFKTGLLTFLPPLVFALFYPEGFLYAIGYAG 338 (381)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hCCCc----ccCC---CchhhhhhHHhHHHHHHHhhHHHHHHHHHHH
Confidence 45567777777788888888777888887666 54422 1112 34455666678889999999987 9999999
Q ss_pred hHHhhhHHHHhhHHHHHHHhccc
Q psy14213 237 AFCLASLGIIFPAAIHILVLRHE 259 (302)
Q Consensus 237 s~~~~~l~fi~P~l~~l~~~~~~ 259 (302)
+.++.+.+++|++++++.++++
T Consensus 339 -~~~~~~~~~~p~l~~~~~r~~~ 360 (381)
T TIGR00837 339 -LAATIWAVIIPALLAWKARKKF 360 (381)
T ss_pred -HHHHHHHHHHHHHHHHHHHhcC
Confidence 8899999999999999977653
No 11
>PLN03074 auxin influx permease; Provisional
Probab=98.38 E-value=5.3e-07 Score=86.27 Aligned_cols=83 Identities=18% Similarity=0.226 Sum_probs=65.9
Q ss_pred hhhhhhhcCChhHHHHHHHHHHHHHhHHHHHHHHHHHHhhcc--cc--------ceeeeeeeeeccchhhhh-hHHHHHH
Q psy14213 8 RGAFALVIPHLDLLISLFGAFCLASLGIIFPATIHILVLRHE--RI--------GFGFLNWVLFKDIFLIAF-GLFVMVS 76 (302)
Q Consensus 8 ~~~~a~~iP~l~~~isl~Ga~~~~~L~li~P~~i~i~~~~~~--~~--------g~~~~~~~~~k~i~~~~~-~~~~~~~ 76 (302)
++++|+++|++++++||+||++.+++++++|++.+..+++.+ .. ..+.+.|..++|+..+.+ +..+..+
T Consensus 363 ~~~iA~~IP~fg~llsLvGs~~~s~l~~i~P~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~iiv~~~~~g~~~ 442 (473)
T PLN03074 363 IWFLAIIFPFFGPINSAVGALLVSFTVYIIPSLAHMLTYRSASARQNAAEKPPFFLPSWTGMYVVNAFVVVWVLVVGFGF 442 (473)
T ss_pred HHHHHHHccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchhhhhhcccCCcccCCccceehhhhhHHHHhhhhHhhcc
Confidence 788999999999999999999999999999999998754332 01 134455667899877765 5555789
Q ss_pred HHHHHHHHhhhhhh
Q psy14213 77 GTVISLMDIFTAIQ 90 (302)
Q Consensus 77 Gt~~~~~~~~~~~~ 90 (302)
|++.++.++++.+.
T Consensus 443 G~~asi~~ii~~~~ 456 (473)
T PLN03074 443 GGWASMTNFVRQID 456 (473)
T ss_pred chHHHHHHHHHhhh
Confidence 99999999887664
No 12
>PF03222 Trp_Tyr_perm: Tryptophan/tyrosine permease family; InterPro: IPR018227 Amino acid permeases are integral membrane proteins involved in the transport of amino acids into the cell. A number of such proteins have been found to be evolutionary related [, , ]. Aromatic amino acids are concentrated in the cytoplasm of Escherichia coli by 4 distinct transport systems: a general aromatic amino acid permease, and a specific permease for each of the 3 types (Phe, Tyr and Trp) []. It has been shown [] that some permeases in E. coli and related bacteria are evolutionary related. These permeases are proteins of about 400 to 420 amino acids and are located in the cytoplasmic membrane and, like bacterial sugar/cation transporters, are thought to contain 12 transmembrane (TM) regions [] - hydropathy analysis, however, is inconclusive, suggesting the possibility of 10 to 12 membrane-spanning domains []. The best conserved domain is a stretch of 20 residues which seems to be located in a cytoplasmic loop between the first and second transmembrane region.
Probab=97.98 E-value=0.00022 Score=66.89 Aligned_cols=168 Identities=15% Similarity=0.196 Sum_probs=108.9
Q ss_pred HHHHHHHHHHHHHHhhhhhhccCCCceEEEeeccccc-CccccccccchhhhHHHHHHHHHHHH--Hhhhhe--------
Q psy14213 71 LFVMVSGTVISLMDIFTAIQEDFHPKTQIVKIEHHMR-EPKKFRQPIGVFNVGIVLTALLFAIT--GMCGYM-------- 139 (302)
Q Consensus 71 ~~~~~~Gt~~~~~~~~~~~~~~~~~~~~~~~i~~~M~-~p~~~~~~~~v~~~s~~~~~~~y~~~--g~~GY~-------- 139 (302)
..........+++.-| +++|++.+.++ |+++.+| ++..+..+..++|... .+.|-+
T Consensus 185 ~~~~~lPv~~~Sf~f~----------~ivPsl~~~~~~d~~k~~~---ai~~Gs~i~lv~yl~w~~~~lg~l~~~~~~~~ 251 (394)
T PF03222_consen 185 YILPALPVLVFSFGFH----------NIVPSLVKYLGGDPKKIRK---AIIIGSLIPLVMYLLWVFSILGSLPREQFAEA 251 (394)
T ss_pred HHHHHHHHHHHHHHHH----------hhhHHHHHHhCccHHHHHH---HHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHH
Confidence 3344455555555555 99999999887 5566666 8888888888888765 334421
Q ss_pred -ecCCcccc--chhcccccCchHHHHHHHHHHHHHHHhhhcchhcHHHHHHHhhhhhccccccccchhhhhhhhHHHHHH
Q psy14213 140 -KYGTAAQG--SMTLNIAEDQIMAQIVKLLYAFVIFFSYPLQNFVPLELLWMNYIKQHMVEYSEKKKLIVEYVFREVIVL 216 (302)
Q Consensus 140 -~fG~~~~~--~il~n~p~~~~~~~~~~~~~~l~~~~sypL~~~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~ 216 (302)
.-|++..+ ....+..++.+......+.-.+++..||-=...-.+|.+.+. ++.+. .++ .|...-.....
T Consensus 252 ~~~~~~~~~~~~~~~~~~~s~~i~~~~~~fa~~Ai~TSFlGv~lgl~d~l~d~-~k~~~----~~~---~r~~~~~ltf~ 323 (394)
T PF03222_consen 252 IAQGGNVSALVSALANVSGSPWISILGSIFAFFAIATSFLGVYLGLFDFLADL-FKLKN----NSS---GRLKTWLLTFL 323 (394)
T ss_pred HhcCCChHHHHHHHHhhcCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HcCCc----ccc---chHHHHHHHHH
Confidence 11211111 122333333455666777777888888766666777887776 54311 112 22223344455
Q ss_pred HHHHHHHhcCc-hhHHHHHhhhHHhhhHHHHhhHHHHHHHhcccc
Q psy14213 217 ITWAFALVIPH-LDLLISLFGAFCLASLGIIFPAAIHILVLRHEK 260 (302)
Q Consensus 217 ~~~~iA~~iP~-~~~v~~lvGs~~~~~l~fi~P~l~~l~~~~~~~ 260 (302)
..+++|...|+ |-..+++.| ...+.+..++|+++.+|.+++++
T Consensus 324 ppl~~a~~~p~~F~~al~~aG-~~~~il~~ilP~~m~~~~r~~~~ 367 (394)
T PF03222_consen 324 PPLIFALLFPNGFLIALGYAG-IGIAILLGILPALMVWKARKRKP 367 (394)
T ss_pred hHHHHHHHCcHHHHHHHHhhc-HHHHHHHHHHHHHHHHHHHcccC
Confidence 67888888886 678899999 99999999999999999877654
No 13
>PRK10483 tryptophan permease; Provisional
Probab=97.73 E-value=0.00074 Score=63.38 Aligned_cols=163 Identities=12% Similarity=0.121 Sum_probs=108.4
Q ss_pred HHhhhhhhccCCCceEEEeecccccC-ccccccccchhhhHHHHHHHHHHHH--Hhhhhee---------cCCccccchh
Q psy14213 83 MDIFTAIQEDFHPKTQIVKIEHHMRE-PKKFRQPIGVFNVGIVLTALLFAIT--GMCGYMK---------YGTAAQGSMT 150 (302)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~i~~~M~~-p~~~~~~~~v~~~s~~~~~~~y~~~--g~~GY~~---------fG~~~~~~il 150 (302)
...+.....+|+.|+++|++.+.+++ +++.+| ++..+..+..++|+.. .+.|-.. -|+++ +..+
T Consensus 195 ~~alPvl~~SFgfh~iIPsl~~y~~~d~~kir~---~I~iGs~Iplv~yl~W~~~~lg~l~~~~~~~~~~~~~ni-~~L~ 270 (414)
T PRK10483 195 LMTLPFCLASFGYHGNVPSLMKYYGKDPKTIVK---CLVYGTLMALALYTIWLLATMGNIPRPEFIGIAEKGGNI-DVLV 270 (414)
T ss_pred HHHHHHHHhhccCCCcchHHHHHhCcCHHHHHH---HHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHcCCCh-HHHH
Confidence 34555566677778999999999874 566666 9999999999998873 3333322 22222 1111
Q ss_pred ccc---ccCchHHHHHHHHHHHHHHHhhhcchhcHHHHHHHhhhhhccccccccchhhhhhhhHHHHHHHHHHHHHhcCc
Q psy14213 151 LNI---AEDQIMAQIVKLLYAFVIFFSYPLQNFVPLELLWMNYIKQHMVEYSEKKKLIVEYVFREVIVLITWAFALVIPH 227 (302)
Q Consensus 151 ~n~---p~~~~~~~~~~~~~~l~~~~sypL~~~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~iA~~iP~ 227 (302)
..+ .++..........-.+++..||-=...-.+|.+.+. ++.+. + ...|...-....+-.+++|...|+
T Consensus 271 ~~l~~~~~~~~i~~~~~~Fa~~Ai~TSFlGv~LGL~d~l~D~-~k~~~----~---~~~r~~~~~ltflPPl~~al~~P~ 342 (414)
T PRK10483 271 QALSGVLNSRSLDLLLVVFSNFAVASSFLGVTLGLFDYLADL-FGFDD----S---AMGRFKTALLTFLPPVVGGLLFPN 342 (414)
T ss_pred HHHHHhcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hCCCC----c---cccceeeehhhHhhHHHHHHHhHH
Confidence 111 223345566777777777777655666677777766 54332 1 112333344566788899999998
Q ss_pred -hhHHHHHhhhHHhhhHHHHhhHHHHHHHhcc
Q psy14213 228 -LDLLISLFGAFCLASLGIIFPAAIHILVLRH 258 (302)
Q Consensus 228 -~~~v~~lvGs~~~~~l~fi~P~l~~l~~~~~ 258 (302)
|-.-++..|.+ ...+.-++|+++-++.+|+
T Consensus 343 ~Fl~AL~yAG~~-~~il~~ilP~lM~~~~Rk~ 373 (414)
T PRK10483 343 GFLYAIGYAGLA-ATIWAAIVPALLARASRKR 373 (414)
T ss_pred HHHHHHHHHHHH-HHHHHHHHHHHHHHHHHhc
Confidence 88899999977 6777789999999998865
No 14
>PRK15132 tyrosine transporter TyrP; Provisional
Probab=97.67 E-value=0.00068 Score=63.64 Aligned_cols=192 Identities=14% Similarity=0.146 Sum_probs=121.9
Q ss_pred HHHhhhhhhccCCCceEEEeecccccC-ccccccccchhhhHHHHHHHHHHHHHhhhheecCCcc-----c-----cchh
Q psy14213 82 LMDIFTAIQEDFHPKTQIVKIEHHMRE-PKKFRQPIGVFNVGIVLTALLFAITGMCGYMKYGTAA-----Q-----GSMT 150 (302)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~i~~~M~~-p~~~~~~~~v~~~s~~~~~~~y~~~g~~GY~~fG~~~-----~-----~~il 150 (302)
....+.....+|+.|+++|++.+.+++ +++.+| ++..+..+..++|+..=......-+.+. + ++++
T Consensus 183 ~~~~iPvl~~SFgfh~iIpsl~~y~~~~~~~~~k---~i~~Gs~i~li~yl~W~~~~lg~l~~~~~~~~~~~~~~~~~~l 259 (403)
T PRK15132 183 ALSAIPVIFTSFGFHGSVPSIVSYMGGNIRKLRW---VFIIGSAIPLVAYIFWQLATLGSIDSTTFMGLLANHAGLNGLL 259 (403)
T ss_pred HHHHHHHHHHHhhCCcccHHHHHHhCcCHHHHHH---HHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHccCchHHHH
Confidence 445556666677778999999999874 456566 8888888888888765433332222221 0 1222
Q ss_pred ccc---ccCchHHHHHHHHHHHHHHHhhhcchhcHHHHHHHhhhhhccccccccchhhhhhhhHHHHHHHHHHHHHhcCc
Q psy14213 151 LNI---AEDQIMAQIVKLLYAFVIFFSYPLQNFVPLELLWMNYIKQHMVEYSEKKKLIVEYVFREVIVLITWAFALVIPH 227 (302)
Q Consensus 151 ~n~---p~~~~~~~~~~~~~~l~~~~sypL~~~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~iA~~iP~ 227 (302)
..+ .++.+....+...-.+++..||-=...-.+|.+.+. ++++. + ...|...-....+..+++|...|+
T Consensus 260 ~~l~~~~~~~~~~~~~~~fa~~Ai~TSFlGv~lgl~d~l~d~-~~~~~----~---~~~r~~~~~l~flppli~a~~~P~ 331 (403)
T PRK15132 260 QALREVVASPHVELAVHLFADLALATSFLGVALGLFDYLADL-FQRRN----T---VGGRLQTGLITFLPPLAFALFYPR 331 (403)
T ss_pred HHHHHHccChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HccCc----c---ccCCchhehhhHHHHHHHHHHhHH
Confidence 222 123455666777777777777655666677777766 44322 1 122455566777888999999997
Q ss_pred -hhHHHHHhhhHHhhhHHHHhhHHHHHHHhccc-cccCCcchHHHHHHHHHHHHHHHHHHH
Q psy14213 228 -LDLLISLFGAFCLASLGIIFPAAIHILVLRHE-KVSFGPLGWILIKDIALIVFGIFIMVS 286 (302)
Q Consensus 228 -~~~v~~lvGs~~~~~l~fi~P~l~~l~~~~~~-~~~~~~~~~~~~~~~~ii~~G~~~~v~ 286 (302)
|....++.|. ..+.+.+++|+++-+|.++++ +++++.+ -.+..+++++.+|++..+.
T Consensus 332 ~F~~al~~aG~-~~ail~~ilP~~m~~~~r~~~~~~~y~v~-gg~~~~~~v~~~G~~~i~~ 390 (403)
T PRK15132 332 GFVMALGYAGV-ALAVLALLLPSLLVWQSRKQNPQAGYRVK-GGRPALALVFLCGIAVIGI 390 (403)
T ss_pred HHHHHHHHHHH-HHHHHHHHHHHHHHHHHhhcCCCCCccCC-CChHHHHHHHHHHHHHHHH
Confidence 6667888776 578999999999999988654 1111110 0245667777777766554
No 15
>PTZ00206 amino acid transporter; Provisional
Probab=97.64 E-value=1.6e-05 Score=76.14 Aligned_cols=75 Identities=19% Similarity=0.386 Sum_probs=58.0
Q ss_pred hhhhhhhcCChhHHHHHHHHHHHHHhHHHHHHHHHHHH--hhccccceeeeeeeeeccchhhhhhHHHHHHHHHHHHHHh
Q psy14213 8 RGAFALVIPHLDLLISLFGAFCLASLGIIFPATIHILV--LRHERIGFGFLNWVLFKDIFLIAFGLFVMVSGTVISLMDI 85 (302)
Q Consensus 8 ~~~~a~~iP~l~~~isl~Ga~~~~~L~li~P~~i~i~~--~~~~~~g~~~~~~~~~k~i~~~~~~~~~~~~Gt~~~~~~~ 85 (302)
+.++|+++||++.+++|+||+|.+.+++++|++.++.. ..++.. +.. ..++|.....+|....++||+.+.++.
T Consensus 389 ~l~iAi~vP~l~~vl~lvGa~~~~~l~fi~P~lf~l~~~~~~~~~~--~~~--~~~~~~~lli~Gv~~~v~Gt~~si~~~ 464 (467)
T PTZ00206 389 MLLCGLFIPKINTVLGFAGSISGGLLGFILPALLFMYSGGFTWQKV--GPF--YYISTYVVLITGVIAIVFGTGATIWGV 464 (467)
T ss_pred HHHHHhccCCHHHhhhhhhHHHHHHHHHHHHHHHHHhcCCccHHhh--chH--HHHHHHHHHHHHhheEEecchhHhhHH
Confidence 46789999999999999999999999999999986542 122222 211 125677777799999999999988775
Q ss_pred h
Q psy14213 86 F 86 (302)
Q Consensus 86 ~ 86 (302)
.
T Consensus 465 ~ 465 (467)
T PTZ00206 465 T 465 (467)
T ss_pred h
Confidence 4
No 16
>PRK13629 threonine/serine transporter TdcC; Provisional
Probab=97.40 E-value=0.0024 Score=60.27 Aligned_cols=201 Identities=14% Similarity=0.085 Sum_probs=125.5
Q ss_pred HHHHhhhhhhccCCCceEEEeecccccCc-------c-ccccccchhhhHHHHHHHHHHHHHhhhheecCCcc-----cc
Q psy14213 81 SLMDIFTAIQEDFHPKTQIVKIEHHMREP-------K-KFRQPIGVFNVGIVLTALLFAITGMCGYMKYGTAA-----QG 147 (302)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~i~~~M~~p-------~-~~~~~~~v~~~s~~~~~~~y~~~g~~GY~~fG~~~-----~~ 147 (302)
.....+....++|++|+.+++....+|+. + .-+|.++++..+..+..++|+..-+..-..-+++. ++
T Consensus 210 ~l~~~iPv~v~SF~f~~iIssl~~y~r~~y~~~~~~~~a~~k~~rii~~gs~i~lv~y~fwv~S~~gsLs~~~l~~a~~q 289 (443)
T PRK13629 210 TVWLGISIMVFSFNFSPIVSSFVVSKREEYEKDFGRDFTERKCSQIISRASMLMVAVVMFFAFSCLFTLSPQNMAEAKAQ 289 (443)
T ss_pred HHHHHHHHHHHHHhccccchHHHHHHHHHhccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHh
Confidence 34455566666777779999987773211 1 01333348888888888888877655554444221 11
Q ss_pred ch--hcc----cccC--------chHHHHHHHHHHHHHHHhhhcchhcHHHHHHHhhhhh---ccccccccchhhhhhhh
Q psy14213 148 SM--TLN----IAED--------QIMAQIVKLLYAFVIFFSYPLQNFVPLELLWMNYIKQ---HMVEYSEKKKLIVEYVF 210 (302)
Q Consensus 148 ~i--l~n----~p~~--------~~~~~~~~~~~~l~~~~sypL~~~p~~~~l~~~~~~~---~~~~~~~~~~~~~~~~~ 210 (302)
++ +.. +++. ........+.-.+++..||-=...-.+|.++.. +.+ +..++ +..++..+...
T Consensus 290 n~s~Ls~La~~~~~~~~~~~~~~~~i~~~~~ifa~~AI~TSFlGv~LGl~E~l~gl-~~~~~~~~~~~-~~~~~~~~~~~ 367 (443)
T PRK13629 290 NIPVLSYLANHFASMTGTKSTFAITLEYAASIIALVAIFKSFFGHYLGTLEGLNGL-ILKFGYKGDKT-KVSLGKLNTIS 367 (443)
T ss_pred CCcHHHHHHHHhhhcccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHhhcccc-ccCHHHHHHHH
Confidence 11 211 2210 223445555555667777666666788888776 421 11110 11234456677
Q ss_pred HHHHHHHHHHHHHhcCchhHHHHHhhhHHhhhHHHHhhHHHHHHHhccccccCCcchHHHHHHHHHHHHHHHHHHHHHH
Q psy14213 211 REVIVLITWAFALVIPHLDLLISLFGAFCLASLGIIFPAAIHILVLRHEKVSFGPLGWILIKDIALIVFGIFIMVSGTV 289 (302)
Q Consensus 211 r~~~~~~~~~iA~~iP~~~~v~~lvGs~~~~~l~fi~P~l~~l~~~~~~~~~~~~~~~~~~~~~~ii~~G~~~~v~Gt~ 289 (302)
...+.+.++.+|..-|++=.+++-+|+-....+.|++|...-.|.-.-++ ++ .+..|+++.+.|++......|
T Consensus 368 ~~~~~~~~w~~~~~np~il~~i~~~~gPiia~il~l~P~y~i~kvp~l~~--yr----~~~~n~fv~~~Gl~~i~~~~~ 440 (443)
T PRK13629 368 MIFIMGSTWVVAYANPNILDLIEAMGAPIIASLLCLLPMYAIRKAPSLAK--YR----GRLDNVFVTVIGLLTILNIVY 440 (443)
T ss_pred HHHHHHHHHHHHHhCccHHHHHHHhhhHHHHHHHHHHHHHHHHccHHHHH--hC----CCchhHHHHHHHHHHHHHHHH
Confidence 78888999999999999999999888888899999999987766533221 11 123578999999887655443
No 17
>TIGR03813 put_Glu_GABA_T putative glutamate/gamma-aminobutyrate antiporter. Members of this protein family are putative putative glutamate/gamma-aminobutyrate antiporters. Each member of the seed alignment is found adjacent to a glutamate decarboxylase, which converts glutamate (Glu) to gamma-aminobutyrate (GABA). However, the majority belong to genome contexts with a glutaminase (converts Gln to Glu) as well as the decarboxylase that converts Glu to GABA. The specificity of the transporter remains uncertain.
Probab=97.33 E-value=0.0092 Score=57.38 Aligned_cols=46 Identities=9% Similarity=0.106 Sum_probs=34.4
Q ss_pred HHHHHhhhhhhccCCCceEEEeecccccCcc-ccccccchhhhHHHHHHHHHHHHHhhhh
Q psy14213 80 ISLMDIFTAIQEDFHPKTQIVKIEHHMREPK-KFRQPIGVFNVGIVLTALLFAITGMCGY 138 (302)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~i~~~M~~p~-~~~~~~~v~~~s~~~~~~~y~~~g~~GY 138 (302)
.+++.|. ......-+|+|||+ +.+| .+..+..++.++|....+.-.
T Consensus 204 ~~af~G~----------e~~~~~a~E~knP~r~iPr---Ai~~~~~~~~~~y~l~~~~~~ 250 (474)
T TIGR03813 204 FLFYAGM----------EMNAVHVKDVDNPDKNYPI---AILIAALGTVLIFVLGTLAIA 250 (474)
T ss_pred HHHHhch----------hHhHHHHHhccCcccchhH---HHHHHHHHHHHHHHHHHHHHH
Confidence 4466777 55667779999996 4666 899999999999987654433
No 18
>PRK09664 tryptophan permease TnaB; Provisional
Probab=97.33 E-value=0.0047 Score=58.01 Aligned_cols=164 Identities=12% Similarity=0.083 Sum_probs=105.2
Q ss_pred HHHhhhhhhccCCCceEEEeecccccC-ccccccccchhhhHHHHHHHHHHHH--Hhhhhe---------ecCCccccc-
Q psy14213 82 LMDIFTAIQEDFHPKTQIVKIEHHMRE-PKKFRQPIGVFNVGIVLTALLFAIT--GMCGYM---------KYGTAAQGS- 148 (302)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~i~~~M~~-p~~~~~~~~v~~~s~~~~~~~y~~~--g~~GY~---------~fG~~~~~~- 148 (302)
....+..+..+|+.|+++|++.+.+++ +++.+| .+.....+..++|..- .+.|-+ .-|+++.+-
T Consensus 195 i~~alPVl~~SFgfh~iIPsl~~y~~~d~~~~~k---aIl~Gs~IpLviY~~W~~~ilG~lp~~~~~~~~~~g~nv~~l~ 271 (415)
T PRK09664 195 IFMALPVCLASFGFHGNIPSLIICYGKRKDKLIK---SVVFGSLLALVIYLFWLYCTMGNIPRESFKAIISSGGNVDSLV 271 (415)
T ss_pred HHHHHHHHHHhhhCCCcchHHHHHhCccHHHHHH---HHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHcCCCchHHH
Confidence 344555556667777999999988874 455455 7777777777777433 333422 222222221
Q ss_pred --hhcccccCchHHHHHHHHHHHHHHHhhhcchhcHHHHHHHhhhhhccccccccchhhhhhhhHHHHHHHHHHHHHhcC
Q psy14213 149 --MTLNIAEDQIMAQIVKLLYAFVIFFSYPLQNFVPLELLWMNYIKQHMVEYSEKKKLIVEYVFREVIVLITWAFALVIP 226 (302)
Q Consensus 149 --il~n~p~~~~~~~~~~~~~~l~~~~sypL~~~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~iA~~iP 226 (302)
...+ .++.+........-.+++..||-=...-..|.+.+. ++.+. + ...|...-....+-.++.|...|
T Consensus 272 ~s~~~~-~~~~~i~~~~~~Fa~~Ai~TSFlGv~LGL~D~l~D~-~~~~~----~---~~~r~~~~~ltflPPl~~al~~P 342 (415)
T PRK09664 272 KSFLGT-KQHGIIEFCLLVFSNLAVASSFFGVTLGLFDYLADL-FKIDN----S---HGGRFKTVLLTFLPPALLYLIFP 342 (415)
T ss_pred HHHHhh-ccChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hCCCC----c---cccceeeehhhHhhhHHHHHHhh
Confidence 1112 223455667777777777777655555667777665 44322 1 12233344456678889999999
Q ss_pred c-hhHHHHHhhhHHhhhHHHHhhHHHHHHHhcc
Q psy14213 227 H-LDLLISLFGAFCLASLGIIFPAAIHILVLRH 258 (302)
Q Consensus 227 ~-~~~v~~lvGs~~~~~l~fi~P~l~~l~~~~~ 258 (302)
+ |=..++..|.. .+.+.-++|+++-++.+++
T Consensus 343 ~gFl~AL~yAG~~-~~il~~ilP~lM~~~~Rk~ 374 (415)
T PRK09664 343 NGFIYGIGGAGLC-ATIWAVIIPAVLAIKARKK 374 (415)
T ss_pred HHHHHHHHHHHHH-HHHHHHHHHHHHHHHHhcc
Confidence 8 88899999996 5688889999999998875
No 19
>TIGR00814 stp serine transporter. The HAAAP family includes well characterized aromatic amino acid:H+ symport permeases and hydroxy amino acid permeases. This subfamily is specific for hydroxy amino acid transporters and includes the serine permease, SdaC, of E. coli, and the threonine permease, TdcC, of E. coli.
Probab=97.23 E-value=0.0011 Score=62.20 Aligned_cols=192 Identities=13% Similarity=0.080 Sum_probs=117.4
Q ss_pred HHHhhhhhhccCCCceEEEeecc----cccCcc-ccccccchhhhHHHHHHHHHHHHHhhhheecCCccc-----cc--h
Q psy14213 82 LMDIFTAIQEDFHPKTQIVKIEH----HMREPK-KFRQPIGVFNVGIVLTALLFAITGMCGYMKYGTAAQ-----GS--M 149 (302)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~i~~----~M~~p~-~~~~~~~v~~~s~~~~~~~y~~~g~~GY~~fG~~~~-----~~--i 149 (302)
...+......+|++|+.+++... +.+||+ .-+|.+++...+..+..++|+..-+..-...+.+.- ++ +
T Consensus 188 i~~alpv~~~SF~~~~iIssl~~~~~~~~~~~~~~~~k~~k~i~~~~~i~~~~y~~~~~s~~~~l~~~~~~~a~~~nis~ 267 (397)
T TIGR00814 188 LWLTIPVMVFSFNHSPIISSFAISYREEYGDKEFAERKCLRIMKGASLILVATVMFFVFSCVLSLSPAEAVAAKEQNISI 267 (397)
T ss_pred HHHHHHHHHHHHHccccchHHHHHHHHHcCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCHHHHHHHHHcCcHH
Confidence 34445555555666689998863 333232 012223388888888888888776655555553321 11 1
Q ss_pred hcc---cccCchHHHHHHHHHHHHHHHhhhcchhcHHHHHHHhhhh-hccccccccchhhhhhhhHHHHHHHHHHHHHhc
Q psy14213 150 TLN---IAEDQIMAQIVKLLYAFVIFFSYPLQNFVPLELLWMNYIK-QHMVEYSEKKKLIVEYVFREVIVLITWAFALVI 225 (302)
Q Consensus 150 l~n---~p~~~~~~~~~~~~~~l~~~~sypL~~~p~~~~l~~~~~~-~~~~~~~~~~~~~~~~~~r~~~~~~~~~iA~~i 225 (302)
+.. -.++..........-.+++..||-=+..-.+|.+... +. .+..+.....++..+......+.+.++.+|..-
T Consensus 268 Ls~l~~~~~~~~i~~~~~~f~~~Ai~tSFlG~~lg~~e~l~~l-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~n 346 (397)
T TIGR00814 268 LSYLANHFNAAWISYAGPIVAIVAISKSFFGHYLGAREGLNGI-VLNSLKMKGKKINIRKLNRAIAIFIVLTTWIVAYIN 346 (397)
T ss_pred HHHHHhhcCCcHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH-HHHHhcccccccCHHHHHHHHHHHHHHHHHHHHHhC
Confidence 111 1112344555666666677788777778888888876 42 211111011234445677778889999999999
Q ss_pred CchhHHHHHhhhHHhhhHHHHhhHHHHHHHhccccccCCcchHH-HHHHHHHHHHHH
Q psy14213 226 PHLDLLISLFGAFCLASLGIIFPAAIHILVLRHEKVSFGPLGWI-LIKDIALIVFGI 281 (302)
Q Consensus 226 P~~~~v~~lvGs~~~~~l~fi~P~l~~l~~~~~~~~~~~~~~~~-~~~~~~ii~~G~ 281 (302)
|++=.+++-+|+-....+.|++|...-.|.-.-+ ++| +..|+++++.|+
T Consensus 347 ~~il~~i~~~~gp~~a~i~~~~p~~~~~~v~~l~-------~~~~~~~~~fv~~~g~ 396 (397)
T TIGR00814 347 PSILSFIEALGGPIIAMILFLMPMYAIYKVPALK-------KYRGRISNVFVTVIGL 396 (397)
T ss_pred ccHHHHHHHhhHHHHHHHHHHHHHHHHHccHHHH-------HhCCCcchheeEeeec
Confidence 9999999988888889999999998766643222 121 134666666554
No 20
>PRK10197 gamma-aminobutyrate transporter; Provisional
Probab=97.00 E-value=0.011 Score=56.31 Aligned_cols=170 Identities=11% Similarity=0.067 Sum_probs=85.8
Q ss_pred HHHHHHHHHHHHHHhhhhhhccCCCceEEEeecccccCccc-cccccchhhhHHHHHHHHHHHHHhh--hheecCCcc--
Q psy14213 71 LFVMVSGTVISLMDIFTAIQEDFHPKTQIVKIEHHMREPKK-FRQPIGVFNVGIVLTALLFAITGMC--GYMKYGTAA-- 145 (302)
Q Consensus 71 ~~~~~~Gt~~~~~~~~~~~~~~~~~~~~~~~i~~~M~~p~~-~~~~~~v~~~s~~~~~~~y~~~g~~--GY~~fG~~~-- 145 (302)
.+....-...+++.+. ......-+|+|||+| .+| ++..++..+.++|....+. +...+++.-
T Consensus 182 ~~~~a~~~~~faf~G~----------e~~~~~a~E~knP~r~iPr---ai~~~~~~i~i~Yil~~~~~~~~~p~~~~~~~ 248 (446)
T PRK10197 182 AVLSAMLITMFSFMGA----------EIVTIAAAESDTPEKHIVR---ATNSVIWRISIFYLCSIFVVVALIPWNMPGLK 248 (446)
T ss_pred HHHHHHHHHHHHHhCH----------HHHHHHHHHhcChhhhHHH---HHHHHHHHHHHHHHHHHHHHheecCcCccccc
Confidence 3444444556677777 555678899999974 566 8878888888889876544 222232210
Q ss_pred -cc---chhcccccCchHHHHHHHHHHHHHHHhhhcchhcHHHHHHHhhhhhc-----cccccccchhhhh-hhhHHHHH
Q psy14213 146 -QG---SMTLNIAEDQIMAQIVKLLYAFVIFFSYPLQNFVPLELLWMNYIKQH-----MVEYSEKKKLIVE-YVFREVIV 215 (302)
Q Consensus 146 -~~---~il~n~p~~~~~~~~~~~~~~l~~~~sypL~~~p~~~~l~~~~~~~~-----~~~~~~~~~~~~~-~~~r~~~~ 215 (302)
.+ ....+.. ......+......+..+.+.--.++...+.++.. -+++ ..+. ++++...+ ..+..++.
T Consensus 249 ~~~~~~~~~~~~g-~~~~~~ii~~~i~~~~~~~~n~~~~~~sR~l~a~-ardg~lP~~~~~~-~~~~~P~~Ail~~~~~~ 325 (446)
T PRK10197 249 AVGSYRSVLELLN-IPHAKLIMDCVILLSVTSCLNSALYTASRMLYSL-SRRGDAPAVMGKI-NRSKTPYVAVLLSTGAA 325 (446)
T ss_pred ccCcHHHHHHHcC-chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HcCCCcCHHHHhh-CcCCCcHHHHHHHHHHH
Confidence 01 1122222 1233444455555555444444445555555543 2211 1110 11111111 22222222
Q ss_pred HHHHHHHHhcC--chhHHHHHhhhHHhhhHHHHhhHHHHHHHhcc
Q psy14213 216 LITWAFALVIP--HLDLLISLFGAFCLASLGIIFPAAIHILVLRH 258 (302)
Q Consensus 216 ~~~~~iA~~iP--~~~~v~~lvGs~~~~~l~fi~P~l~~l~~~~~ 258 (302)
.+..+.....| .++.++++.+... .+.+..+++.+++.+|+
T Consensus 326 ~l~~l~~~~~~~~~~~~l~~~~~~~~--li~y~~~~~a~i~lr~~ 368 (446)
T PRK10197 326 FLTVVVNYYAPAKVFKFLIDSSGAIA--LLVYLVIAVSQLRMRKI 368 (446)
T ss_pred HHHHHHHhcChHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHH
Confidence 22222222222 3666676655444 48888898888887764
No 21
>TIGR03810 arg_ornith_anti arginine/ornithine antiporter. Members of this protein family are the arginine/ornithine antiporter, ArcD. This exchanger of ornithine for arginine occurs in a system with arginine deiminase, ornithine carbamoyltransferase, and carbamate kinase, with together turn arginine to ornithine with the generation of ATP and release of CO2.
Probab=96.97 E-value=0.056 Score=51.86 Aligned_cols=165 Identities=9% Similarity=0.097 Sum_probs=81.5
Q ss_pred HHHHHHHhhhhhhccCCCceEEEeecccccCccccccccchhhhHHHHHHHHHHHHHhhhheecCCcc----ccc----h
Q psy14213 78 TVISLMDIFTAIQEDFHPKTQIVKIEHHMREPKKFRQPIGVFNVGIVLTALLFAITGMCGYMKYGTAA----QGS----M 149 (302)
Q Consensus 78 t~~~~~~~~~~~~~~~~~~~~~~~i~~~M~~p~~~~~~~~v~~~s~~~~~~~y~~~g~~GY~~fG~~~----~~~----i 149 (302)
...+++.+.| ....+.+|+|||++.+| .+..++..+..+|....+..+-..+++. +++ +
T Consensus 203 ~~~~~f~G~e----------~~~~~a~e~k~~k~ip~---ai~~~~~~v~~lY~l~~~~~~g~~~~~~l~~~~~p~~~~~ 269 (468)
T TIGR03810 203 VTVWVFIGIE----------GASMLSARAEKRSDVGK---ATVIGLIGVLAIYVLVSVLSYGIMTQAQLAGLKNPSMAYV 269 (468)
T ss_pred HHHHHHHhHh----------HHhhhHhhccCcccchH---HHHHHHHHHHHHHHHHHHHHHhCcCHHHHhcCCCchHHHH
Confidence 3455666663 33356677888777777 8999999999999988766554333211 111 1
Q ss_pred hcccccCchHHHHHHHHHHHHHHHhhhcchhcHHHHHHHh----hhhhccccccccchhhhh-hhhHHHHHHHHHHHHHh
Q psy14213 150 TLNIAEDQIMAQIVKLLYAFVIFFSYPLQNFVPLELLWMN----YIKQHMVEYSEKKKLIVE-YVFREVIVLITWAFALV 224 (302)
Q Consensus 150 l~n~p~~~~~~~~~~~~~~l~~~~sypL~~~p~~~~l~~~----~~~~~~~~~~~~~~~~~~-~~~r~~~~~~~~~iA~~ 224 (302)
..+.- .++...+...+..++.+.+.--......|.++.. .+.+...+. ++++...+ ..+...+.....++...
T Consensus 270 ~~~~~-g~~~~~~i~~~~~is~~~~~~~~~~~~sR~~~a~ardg~lP~~f~k~-~~~~tP~~al~~~~~i~~~~~l~~~~ 347 (468)
T TIGR03810 270 LEHMV-GTWGAVLINIGLIISILGAWLSWTLLPAEIPLLMAKDKLMPKYFGKE-NANGAPTNALWLTNGLIQIFLLTTLF 347 (468)
T ss_pred HHHHc-chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCccHHHHhh-CCCCCCHHHHHHHHHHHHHHHHHHHc
Confidence 11111 1233445555555555544333333444444332 011111110 11111212 22222222221111111
Q ss_pred -cCchhHHHHHhhhHHhhhHHHHhhHHHHHHHhccc
Q psy14213 225 -IPHLDLLISLFGAFCLASLGIIFPAAIHILVLRHE 259 (302)
Q Consensus 225 -iP~~~~v~~lvGs~~~~~l~fi~P~l~~l~~~~~~ 259 (302)
-+.++.+.++ +.....+.|.++++.+++.++++
T Consensus 348 ~~~~~~~l~~~--~~~~~li~y~~~~~~~~~l~~~~ 381 (468)
T TIGR03810 348 SEQAYNFAISL--ATSAILVPYLWSAAYQVKLSWRG 381 (468)
T ss_pred cHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHhc
Confidence 2345555555 33356788999999999887553
No 22
>PRK10655 potE putrescine transporter; Provisional
Probab=96.96 E-value=0.064 Score=50.93 Aligned_cols=48 Identities=6% Similarity=0.037 Sum_probs=36.9
Q ss_pred HHHHHHHHhhhhhhccCCCceEEEeecccccCcc-ccccccchhhhHHHHHHHHHHHHHhhh
Q psy14213 77 GTVISLMDIFTAIQEDFHPKTQIVKIEHHMREPK-KFRQPIGVFNVGIVLTALLFAITGMCG 137 (302)
Q Consensus 77 Gt~~~~~~~~~~~~~~~~~~~~~~~i~~~M~~p~-~~~~~~~v~~~s~~~~~~~y~~~g~~G 137 (302)
....+++.+. ......-+|+|||+ +.+| .+..+..++.++|.......
T Consensus 196 ~~~~~af~G~----------e~~~~~a~E~k~P~r~iPr---Ai~~~~~~~~~~Y~l~~~~~ 244 (438)
T PRK10655 196 AMTLWAFLGL----------ESACANSDAVENPERNVPI---AVLGGTLGAAVIYIVSTNVI 244 (438)
T ss_pred HHHHHHHhhh----------hhhhhhHHHhhCccccccH---HHHHHHHHHHHHHHHHHHHH
Confidence 3445666677 66678889999996 5677 99999999999998865443
No 23
>PRK10249 phenylalanine transporter; Provisional
Probab=96.95 E-value=0.012 Score=56.41 Aligned_cols=167 Identities=13% Similarity=0.176 Sum_probs=80.2
Q ss_pred HHHHHHHHHHHHhhhhhhccCCCceEEEeecccccCccc-cccccchhhhHHHHHHHHHHHHHhhhheecCCcc----cc
Q psy14213 73 VMVSGTVISLMDIFTAIQEDFHPKTQIVKIEHHMREPKK-FRQPIGVFNVGIVLTALLFAITGMCGYMKYGTAA----QG 147 (302)
Q Consensus 73 ~~~~Gt~~~~~~~~~~~~~~~~~~~~~~~i~~~M~~p~~-~~~~~~v~~~s~~~~~~~y~~~g~~GY~~fG~~~----~~ 147 (302)
........+++.+. ......-+|+|||+| .|| ++..++..+.++|......-....+++. .+
T Consensus 212 ~~~~~~~~~af~G~----------e~~~~~a~E~~~P~k~iPr---ai~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~ 278 (458)
T PRK10249 212 ILSLAVIMFSFGGL----------ELIGITAAEARDPEKSIPK---AVNQVVYRILLFYIGSLVVLLALYPWVEVKSNSS 278 (458)
T ss_pred HHHHHHHHHHHcCH----------HHHHHHHHHhcCHhhHHHH---HHHHHHHHHHHHHHHHHHHHheeccccccCccCC
Confidence 34444455666677 455578899999964 566 8888888888889775443332222211 01
Q ss_pred chh---cccccCchHHHHHHHHHHHHHHHhhhcchhcHHHHHHHhhhhhc-----cccccccchh-hhhhhhHHHHHHHH
Q psy14213 148 SMT---LNIAEDQIMAQIVKLLYAFVIFFSYPLQNFVPLELLWMNYIKQH-----MVEYSEKKKL-IVEYVFREVIVLIT 218 (302)
Q Consensus 148 ~il---~n~p~~~~~~~~~~~~~~l~~~~sypL~~~p~~~~l~~~~~~~~-----~~~~~~~~~~-~~~~~~r~~~~~~~ 218 (302)
+.. .+.. .+....+......+..+.+.--.++...+.++.. -+++ +.+- ++++. +.-..+..++..+.
T Consensus 279 p~~~~~~~~~-~~~~~~~~~~~~~~a~~~~~~~~~~~~sR~l~a~-ardg~lP~~~~kv-~~~~~P~~All~~~~i~~l~ 355 (458)
T PRK10249 279 PFVMIFHNLD-SNVVASALNFVILVASLSVYNSGVYSNSRMLFGL-SVQGNAPKFLTRV-SRRGVPINSLMLSGAITSLV 355 (458)
T ss_pred cHHHHHHHcC-chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hcCCCcCHHHHHh-CCCCCCHHHHHHHHHHHHHH
Confidence 111 1111 1223333333344444333322233444544433 1211 1110 11111 22223333333333
Q ss_pred HHHHHhcCc--hhHHHHHhhhHHhhhHHHHhhHHHHHHHhc
Q psy14213 219 WAFALVIPH--LDLLISLFGAFCLASLGIIFPAAIHILVLR 257 (302)
Q Consensus 219 ~~iA~~iP~--~~~v~~lvGs~~~~~l~fi~P~l~~l~~~~ 257 (302)
.++....|+ ++.+.++ +.....+.|++|++.+++.++
T Consensus 356 ~l~~~~~~~~~f~~l~~~--~~~~~~i~y~~~~~~~l~~r~ 394 (458)
T PRK10249 356 VLINYLLPQKAFGLLMAL--VVATLLLNWIMICLAHLRFRA 394 (458)
T ss_pred HHHHHhChHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHH
Confidence 333223332 4444444 233567899999999999775
No 24
>PRK10746 putative transport protein YifK; Provisional
Probab=96.82 E-value=0.029 Score=53.77 Aligned_cols=175 Identities=9% Similarity=0.066 Sum_probs=88.2
Q ss_pred HHHHHHHHHHHHHHhhhhhhccCCCceEEEeecccccCcc-ccccccchhhhHHHHHHHHHHHHHhhhheecCCc-cc--
Q psy14213 71 LFVMVSGTVISLMDIFTAIQEDFHPKTQIVKIEHHMREPK-KFRQPIGVFNVGIVLTALLFAITGMCGYMKYGTA-AQ-- 146 (302)
Q Consensus 71 ~~~~~~Gt~~~~~~~~~~~~~~~~~~~~~~~i~~~M~~p~-~~~~~~~v~~~s~~~~~~~y~~~g~~GY~~fG~~-~~-- 146 (302)
.+........+++.+. ..+...-+|+|||+ ..|| +...++..+.++|......--.....+ ..
T Consensus 201 g~~~~~~~~~faf~G~----------e~v~~~a~E~knP~k~iP~---Ai~~~~~~i~~~yv~~~~~~~~~~p~~~~~~~ 267 (461)
T PRK10746 201 GFLTALCIVVASYQGV----------ELIGITAGEAKNPQVTLRS---AVGKVLWRILIFYVGAIFVIVTIFPWNEIGSN 267 (461)
T ss_pred HHHHHHHHHHHHhcCH----------HHHHHHHHHhcChhhHHHH---HHHHHHHHHHHHHHHHHHHHeeeeCCCCCCCC
Confidence 3344445556667777 45557888999995 5565 777777777888887544333333221 11
Q ss_pred -cchh---cccccCchHHHHHHHHHHHHHHHhhhcchhcHHHHHHHhhhhhc-ccc---ccccchh-hhhhhhHHHHHHH
Q psy14213 147 -GSMT---LNIAEDQIMAQIVKLLYAFVIFFSYPLQNFVPLELLWMNYIKQH-MVE---YSEKKKL-IVEYVFREVIVLI 217 (302)
Q Consensus 147 -~~il---~n~p~~~~~~~~~~~~~~l~~~~sypL~~~p~~~~l~~~~~~~~-~~~---~~~~~~~-~~~~~~r~~~~~~ 217 (302)
++.. .+.. ......+......+..+.+.--.++...+.++.. -+++ .++ +.+++.. +.-..+......+
T Consensus 268 ~sp~v~~~~~~g-~~~~~~i~~~~il~a~~s~~n~~~~~~sR~l~~~-a~~g~lP~~~~~~~~~g~P~~al~~~~~~~~l 345 (461)
T PRK10746 268 GSPFVLTFAKIG-ITAAAGIINFVVLTAALSGCNSGMYSCGRMLYAL-AKNRQLPAAMAKVSRHGVPVAGVAVSILILLV 345 (461)
T ss_pred CCcHHHHHHHhC-chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HhCCCcCHHHHHhCCCCCcHHHHHHHHHHHHH
Confidence 1111 1111 1122334444444444444433445555655543 2211 110 0011111 1112222222222
Q ss_pred HHHHHHhcCchhHHHHHhhhHHh--hhHHHHhhHHHHHHHhcccc
Q psy14213 218 TWAFALVIPHLDLLISLFGAFCL--ASLGIIFPAAIHILVLRHEK 260 (302)
Q Consensus 218 ~~~iA~~iP~~~~v~~lvGs~~~--~~l~fi~P~l~~l~~~~~~~ 260 (302)
...+....|+-+.+++.+-+.++ ..+.++.+++.+++.+++++
T Consensus 346 ~~~~~~~~~~~~~~f~~l~~~~~~~~~i~w~~i~~~~i~~r~~~~ 390 (461)
T PRK10746 346 GSCLNYIIPNPQRVFVYVYSASVLPGMVPWFVILISQLRFRRAHK 390 (461)
T ss_pred HHHHHHhccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 33344456766666665554443 47889999999999877654
No 25
>PRK11021 putative transporter; Provisional
Probab=96.62 E-value=0.19 Score=47.35 Aligned_cols=52 Identities=12% Similarity=0.330 Sum_probs=39.2
Q ss_pred HHHHHHHHHHHHHhhhhhhccCCCceEEEeecccccCcc-ccccccchhhhHHHHHHHHHHHHHhh
Q psy14213 72 FVMVSGTVISLMDIFTAIQEDFHPKTQIVKIEHHMREPK-KFRQPIGVFNVGIVLTALLFAITGMC 136 (302)
Q Consensus 72 ~~~~~Gt~~~~~~~~~~~~~~~~~~~~~~~i~~~M~~p~-~~~~~~~v~~~s~~~~~~~y~~~g~~ 136 (302)
+........+++.+. ......-+|+|||+ +.+| .+..+..++.++|......
T Consensus 179 ~~~~~~~~~~af~G~----------e~~~~~a~E~k~P~k~iPr---Ai~~~~~~~~~lYil~~~~ 231 (410)
T PRK11021 179 LFAALGVMFWCFVGI----------EAFAHLASEFKNPERDFPR---ALMIGLLLAGLVYWACTVV 231 (410)
T ss_pred HHHHHHHHHHHHhcH----------HHHHhhHHhccCccccccH---HHHHHHHHHHHHHHHHHHH
Confidence 334444555667777 66678899999995 5677 9999999999999987654
No 26
>PRK10238 aromatic amino acid transporter; Provisional
Probab=96.59 E-value=0.043 Score=52.54 Aligned_cols=168 Identities=11% Similarity=0.168 Sum_probs=79.8
Q ss_pred HHHHHHHHHHHhhhhhhccCCCceEEEeecccccCccc-cccccchhhhHHHHHHHHHHHHHhh--hheecCCcc--ccc
Q psy14213 74 MVSGTVISLMDIFTAIQEDFHPKTQIVKIEHHMREPKK-FRQPIGVFNVGIVLTALLFAITGMC--GYMKYGTAA--QGS 148 (302)
Q Consensus 74 ~~~Gt~~~~~~~~~~~~~~~~~~~~~~~i~~~M~~p~~-~~~~~~v~~~s~~~~~~~y~~~g~~--GY~~fG~~~--~~~ 148 (302)
...+...+++.+. ......-+|+|||+| .|| ++..++....+.|...-.. +...+++-. .++
T Consensus 204 ~~~~~~~~af~G~----------e~~~~~aeE~knP~r~iPr---Ai~~~~~~i~~~y~~~~~~~~~~~p~~~l~~~~sP 270 (456)
T PRK10238 204 MMMAIIMFSFGGL----------ELVGITAAEADNPEQSIPK---ATNQVIYRILIFYIGSLAVLLSLMPWTRVTADTSP 270 (456)
T ss_pred HHHHHHHHHhcCH----------HHHHHHHHhhcChhhHHHH---HHHHHHHHHHHHHHHHHHHHheecChhccCCCCCc
Confidence 3444556677777 455578899999964 666 7776777777777654222 122222111 111
Q ss_pred h---hcccccCchHHHHHHHHHHHHHHHhhhcchhcHHHHHHHhhhhhc-----cccccccchhhhh-hhhHHHHHHHHH
Q psy14213 149 M---TLNIAEDQIMAQIVKLLYAFVIFFSYPLQNFVPLELLWMNYIKQH-----MVEYSEKKKLIVE-YVFREVIVLITW 219 (302)
Q Consensus 149 i---l~n~p~~~~~~~~~~~~~~l~~~~sypL~~~p~~~~l~~~~~~~~-----~~~~~~~~~~~~~-~~~r~~~~~~~~ 219 (302)
. ..+.. ......+......+..+.+.--..+...+.++.. -+++ +.+- ++++...+ ..+...+..+..
T Consensus 271 ~~~~~~~~g-~~~~~~i~~~~i~~~~~s~~~~~~~~~sR~l~a~-ardg~lP~~f~kv-~~~~~P~~Ail~~~~i~~l~~ 347 (456)
T PRK10238 271 FVLIFHELG-DTFVANALNIVVLTAALSVYNSCVYCNSRMLFGL-AQQGNAPKALASV-DKRGVPVNTILVSALVTALCV 347 (456)
T ss_pred HHHHHHHcC-ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HhCCCccHHHHhh-CcCCCcHHHHHHHHHHHHHHH
Confidence 1 11121 1223334444444444433333344555555443 2211 1110 11111222 222222222222
Q ss_pred HHHHhcC--chhHHHHHhhhHHhhhHHHHhhHHHHHHHhccc
Q psy14213 220 AFALVIP--HLDLLISLFGAFCLASLGIIFPAAIHILVLRHE 259 (302)
Q Consensus 220 ~iA~~iP--~~~~v~~lvGs~~~~~l~fi~P~l~~l~~~~~~ 259 (302)
++....| .++.+.++ +..+..+.|.+|++.+++.+|++
T Consensus 348 l~~~~~~~~~f~~l~~~--~~~~~~i~y~~~~~~~l~~r~~~ 387 (456)
T PRK10238 348 LINYLAPESAFGLLMAL--VVSALVINWAMISLAHMKFRRAK 387 (456)
T ss_pred HHHhcChHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHH
Confidence 2211223 25555555 33456789999999999987653
No 27
>TIGR00909 2A0306 amino acid transporter.
Probab=96.53 E-value=0.091 Score=49.66 Aligned_cols=164 Identities=12% Similarity=0.067 Sum_probs=80.6
Q ss_pred HHHHHHHHHhhhhhhccCCCceEEEeecccccCcc-ccccccchhhhHHHHHHHHHHHHHhhhheecCCc--ccc-----
Q psy14213 76 SGTVISLMDIFTAIQEDFHPKTQIVKIEHHMREPK-KFRQPIGVFNVGIVLTALLFAITGMCGYMKYGTA--AQG----- 147 (302)
Q Consensus 76 ~Gt~~~~~~~~~~~~~~~~~~~~~~~i~~~M~~p~-~~~~~~~v~~~s~~~~~~~y~~~g~~GY~~fG~~--~~~----- 147 (302)
.....+++.+. .......+|+|||+ +.+| .+..++.++.++|..........-+.+ .++
T Consensus 201 ~~~~~~af~G~----------e~~~~~~~E~~~p~r~ip~---ai~~~~~~~~v~Yil~~~~~~~~~~~~~~~~~~~~~~ 267 (429)
T TIGR00909 201 TALVFFAFIGF----------EAISTAAEEVKNPERDIPK---AIILSLIVVTLLYVLVAAVILGAVPWRQLAGSTAPLS 267 (429)
T ss_pred HHHHHHHHhhH----------HHHHhhHHhccCccccccH---HHHHHHHHHHHHHHHHHHHHhcCcCHHHhCCCCcHHH
Confidence 33445556666 45557889999995 4566 899999999999998865443222111 111
Q ss_pred chhcccccCchHHHHHHHHHHHHHHHhhhcchhcHHHHHHHhhhhhc-----cccccccchhhhhhhhHHHHHHHHHHHH
Q psy14213 148 SMTLNIAEDQIMAQIVKLLYAFVIFFSYPLQNFVPLELLWMNYIKQH-----MVEYSEKKKLIVEYVFREVIVLITWAFA 222 (302)
Q Consensus 148 ~il~n~p~~~~~~~~~~~~~~l~~~~sypL~~~p~~~~l~~~~~~~~-----~~~~~~~~~~~~~~~~r~~~~~~~~~iA 222 (302)
.+..+.. .++...+..+...+....+.--......+.+... -+++ ..+..++.+...+..+-.. ..+. +.
T Consensus 268 ~~~~~~~-~~~~~~~~~i~~~~~~~~~~~~~~~~~sR~~~~~-a~dg~lP~~~~~~~~~~~~P~~a~~~~~--~i~~-~~ 342 (429)
T TIGR00909 268 LVGYDLG-QGIGGLILTAGAVFSIASVMLAGIYGTSRVLFAM-SRDGLLPGSLSKVHPKTGTPHMSIIIFS--LTAA-LL 342 (429)
T ss_pred HHHHHhC-chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HcCCCCcHHHHHcCCCCCCcHHHHHHHH--HHHH-HH
Confidence 1111111 2334445555555555555444444444444433 2221 1110011111111111111 1111 11
Q ss_pred HhcCchhHHHHHhhhHHhhhHHHHhhHHHHHHHhccc
Q psy14213 223 LVIPHLDLLISLFGAFCLASLGIIFPAAIHILVLRHE 259 (302)
Q Consensus 223 ~~iP~~~~v~~lvGs~~~~~l~fi~P~l~~l~~~~~~ 259 (302)
....+++.+.++. ..+..+.|++.++-.++.++++
T Consensus 343 ~~~~~~~~l~~~~--~~~~~~~y~~~~~a~~~lr~~~ 377 (429)
T TIGR00909 343 ASLVPLEGLAELT--SIGTLIAFAAVNVAVIILRRRR 377 (429)
T ss_pred HHHcCHHHHHHHH--HHHHHHHHHHHHHHHHHHHhhc
Confidence 2245677777753 3334667777777776766544
No 28
>PRK15049 L-asparagine permease; Provisional
Probab=96.48 E-value=0.069 Score=51.76 Aligned_cols=163 Identities=9% Similarity=0.079 Sum_probs=82.9
Q ss_pred HHHHHHHhhhhhhccCCCceEEEeecccccCccc-cccccchhhhHHHHHHHHHHHHHhhhheecCCc-c---ccchh--
Q psy14213 78 TVISLMDIFTAIQEDFHPKTQIVKIEHHMREPKK-FRQPIGVFNVGIVLTALLFAITGMCGYMKYGTA-A---QGSMT-- 150 (302)
Q Consensus 78 t~~~~~~~~~~~~~~~~~~~~~~~i~~~M~~p~~-~~~~~~v~~~s~~~~~~~y~~~g~~GY~~fG~~-~---~~~il-- 150 (302)
...+++.+. ..+...-+|+|||+| .+| ++..++..+.++|......-....+.+ . .++..
T Consensus 228 ~~~faf~G~----------e~i~~~aeE~knP~r~iPr---Ai~~~~~~i~~~yi~~~~~~~~~~p~~~~~~~~sP~~~~ 294 (499)
T PRK15049 228 GVVFAFASI----------EMVGTAAGECKDPQTMVPK---AINSVIWRIGLFYVGSVVLLVMLLPWSAYQAGQSPFVTF 294 (499)
T ss_pred HHHHHHhhH----------HHHHHHHHHhcChhhHHHH---HHHHHHHHHHHHHHHHHHHHheecchhccCcCCCHHHHH
Confidence 355667777 555578899999974 666 888888888888887655433333311 1 11111
Q ss_pred -cccccCchHHHHHHHHHHHHHHHhhhcchhcHHHHHHHhhhhhc-cc----cccccchhhhh-hhhHHHHHHHHHHHHH
Q psy14213 151 -LNIAEDQIMAQIVKLLYAFVIFFSYPLQNFVPLELLWMNYIKQH-MV----EYSEKKKLIVE-YVFREVIVLITWAFAL 223 (302)
Q Consensus 151 -~n~p~~~~~~~~~~~~~~l~~~~sypL~~~p~~~~l~~~~~~~~-~~----~~~~~~~~~~~-~~~r~~~~~~~~~iA~ 223 (302)
.+.. ..+...+......+..+.+.--.++...+.++.. -+++ .+ +- ++++...+ .++..++.++..++..
T Consensus 295 ~~~~g-~~~~~~ii~~~ilia~~ss~ns~~~~~sR~l~a~-Ardg~lP~~f~kv-~k~~~P~~Ail~~~~i~~l~~~l~~ 371 (499)
T PRK15049 295 FSKLG-VPYIGSIMNIVVLTAALSSLNSGLYCTGRILRSM-AMGGSAPSFMAKM-SRQHVPYAGILATLVVYVVGVFLNY 371 (499)
T ss_pred HHHcC-chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HhcCCcCHHHHHh-CCCCCCHHHHHHHHHHHHHHHHHHh
Confidence 1111 1223344444445554444433344555555443 2211 11 10 11111222 2223332222222333
Q ss_pred hcCc--hhHHHHHhhhHHhhhHHHHhhHHHHHHHhcc
Q psy14213 224 VIPH--LDLLISLFGAFCLASLGIIFPAAIHILVLRH 258 (302)
Q Consensus 224 ~iP~--~~~v~~lvGs~~~~~l~fi~P~l~~l~~~~~ 258 (302)
..|. ++.++++ +..+..+.|.+|++.+++.+++
T Consensus 372 ~~~~~~f~~l~~~--~~~~~li~y~~~~~~~l~~R~~ 406 (499)
T PRK15049 372 LVPSRVFEIVLNF--ASLGIIASWAFIIVCQMRLRKA 406 (499)
T ss_pred cChHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHh
Confidence 3332 5555665 4456788999999999988754
No 29
>PRK10644 arginine:agmatin antiporter; Provisional
Probab=96.46 E-value=0.13 Score=49.08 Aligned_cols=46 Identities=9% Similarity=0.122 Sum_probs=35.6
Q ss_pred HHHHHHHhhhhhhccCCCceEEEeecccccCcc-ccccccchhhhHHHHHHHHHHHHHhh
Q psy14213 78 TVISLMDIFTAIQEDFHPKTQIVKIEHHMREPK-KFRQPIGVFNVGIVLTALLFAITGMC 136 (302)
Q Consensus 78 t~~~~~~~~~~~~~~~~~~~~~~~i~~~M~~p~-~~~~~~~v~~~s~~~~~~~y~~~g~~ 136 (302)
...+++.+. ......-+|+|||+ +.+| .+..+..++.++|......
T Consensus 199 ~~~~af~G~----------e~~~~~aeE~k~P~r~iPr---ai~~s~~i~~v~Y~l~~~~ 245 (445)
T PRK10644 199 VTLWSFIGV----------ESASVAAGVVKNPKRNVPI---ATIGGVLIAAVCYVLSSTA 245 (445)
T ss_pred HHHHHHHhH----------HHHHHHHHHhhCcccchhH---HHHHHHHHHHHHHHHHHHH
Confidence 445566666 45557889999996 5666 9999999999999988765
No 30
>PRK11049 D-alanine/D-serine/glycine permease; Provisional
Probab=96.45 E-value=0.068 Score=51.33 Aligned_cols=52 Identities=6% Similarity=0.027 Sum_probs=34.5
Q ss_pred HHHHHHHHHHHhhhhhhccCCCceEEEeecccccCccc-cccccchhhhHHHHHHHHHHHHHhhhh
Q psy14213 74 MVSGTVISLMDIFTAIQEDFHPKTQIVKIEHHMREPKK-FRQPIGVFNVGIVLTALLFAITGMCGY 138 (302)
Q Consensus 74 ~~~Gt~~~~~~~~~~~~~~~~~~~~~~~i~~~M~~p~~-~~~~~~v~~~s~~~~~~~y~~~g~~GY 138 (302)
.......+++.+. ......-+|+|||+| .+| ++..+...+.+.|......-+
T Consensus 215 ~~~~~~~~af~G~----------e~~~~~a~E~knP~r~iPr---ai~~~~~~~~~~y~l~~~~~~ 267 (469)
T PRK11049 215 AGFQIAVFAFVGI----------ELVGTTAAETKDPEKSLPR---AINSIPIRIIMFYVFALIVIM 267 (469)
T ss_pred HHHHHHHHHHhcH----------HHHHHHHHHhcCHhhHHHH---HHHHHHHHHHHHHHHHHHHHe
Confidence 3334455666677 556678899999974 566 776666667777876655443
No 31
>TIGR00907 2A0304 amino acid permease (GABA permease).
Probab=96.42 E-value=0.13 Score=49.55 Aligned_cols=33 Identities=3% Similarity=0.005 Sum_probs=23.6
Q ss_pred eEEEeecccccCcc-ccccccchhhhHHHHHHHHHHH
Q psy14213 97 TQIVKIEHHMREPK-KFRQPIGVFNVGIVLTALLFAI 132 (302)
Q Consensus 97 ~~~~~i~~~M~~p~-~~~~~~~v~~~s~~~~~~~y~~ 132 (302)
......-+|+|||+ +.+| ++..+..++.+++..
T Consensus 234 e~~~~~a~E~knP~r~iP~---Ai~~s~~i~~~~~~~ 267 (482)
T TIGR00907 234 DGTAHMAEEIENPEVVGPR---AIIGAVAIGIVTGFC 267 (482)
T ss_pred chhhHHHHhcCChhhhcCH---HHHHHHHHHHHHHHH
Confidence 66778899999996 4566 787877766654433
No 32
>PF13520 AA_permease_2: Amino acid permease; PDB: 3NCY_A 3GI8_C 3GIA_A 3GI9_C 3OB6_A 3L1L_A 3LRC_D 3LRB_B 4DJK_A 4DJI_A ....
Probab=96.33 E-value=0.048 Score=51.44 Aligned_cols=168 Identities=14% Similarity=0.172 Sum_probs=88.4
Q ss_pred HHHHHHHHHHHhhhhhhccCCCceEEEeecccccCccccccccchhhhHHHHHHHHHHHHHhhhheecCCccc---cch-
Q psy14213 74 MVSGTVISLMDIFTAIQEDFHPKTQIVKIEHHMREPKKFRQPIGVFNVGIVLTALLFAITGMCGYMKYGTAAQ---GSM- 149 (302)
Q Consensus 74 ~~~Gt~~~~~~~~~~~~~~~~~~~~~~~i~~~M~~p~~~~~~~~v~~~s~~~~~~~y~~~g~~GY~~fG~~~~---~~i- 149 (302)
..+....+++.+. ......-+|+|| |+.+| .+..++.++.++|......-....+++.. ++.
T Consensus 192 ~~~~~~~~~~~G~----------e~~~~~~~E~k~-k~ip~---ai~~~~~~~~i~y~l~~~~~~~~~~~~~~~~~~~~~ 257 (426)
T PF13520_consen 192 AGFSVAFFAFSGF----------EAIASLAEENKN-KTIPR---AIIISIIIVAIIYILFSIALLGALPDDELANSSNSP 257 (426)
T ss_dssp HHHHHHGGGGTTT----------THHHHGGGGSSS-HHHHH---HHHHHHHHHHHHHHHHHHHHHTTSTHCHHHTTTCHH
T ss_pred hHHHHHHhhcccc----------cccccccccccc-hhhee---ecccchhHHHHHHhhhhheeeecccchhhhcccccc
Confidence 3344445555566 566688888988 56788 99999999999999886655444443211 111
Q ss_pred --hcc---cccCchHHHHHHHHHHHHHHHhhhcchhcHHHHHHHhhhhhcc-ccccc---cchhhhhhhhHHHHHHHHHH
Q psy14213 150 --TLN---IAEDQIMAQIVKLLYAFVIFFSYPLQNFVPLELLWMNYIKQHM-VEYSE---KKKLIVEYVFREVIVLITWA 220 (302)
Q Consensus 150 --l~n---~p~~~~~~~~~~~~~~l~~~~sypL~~~p~~~~l~~~~~~~~~-~~~~~---~~~~~~~~~~r~~~~~~~~~ 220 (302)
... .-..++...+..+...+..+.+..-.+....+.++.. -+++. ++.-. +++...+... .....+.+
T Consensus 258 ~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~sR~l~~~-a~d~~lP~~~~~~~k~~~P~~a~~--~~~~i~~i 334 (426)
T PF13520_consen 258 SPFAVLASAVGGSWLAIIVSIAAILSLFGSINAFIFGASRLLYAM-ARDGVLPKWFAKVNKFGTPYNAII--LVAVISSI 334 (426)
T ss_dssp CHHHHHHHHHHCCTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHTTSSSGGGGTTSSSSSCHHHHH--HHHHHHHH
T ss_pred cccchhhccccccccccccccccccccccccchhhcchhhccccc-ccccchhhhhhhccccCCceeeeh--hhhHHHHH
Confidence 101 1112355555556666666666555555666666554 22221 11001 1111111111 11122212
Q ss_pred HHH---hcC--chhHHHHHhhhHHhhhHHHHhhHHHHHHHhcccc
Q psy14213 221 FAL---VIP--HLDLLISLFGAFCLASLGIIFPAAIHILVLRHEK 260 (302)
Q Consensus 221 iA~---~iP--~~~~v~~lvGs~~~~~l~fi~P~l~~l~~~~~~~ 260 (302)
... ..| +++.+.++ +.....+.++++.+..++.+++++
T Consensus 335 ~~~~~~~~~~~~~~~l~~~--~~~~~~~~~~~~~~~~~~~~~~~~ 377 (426)
T PF13520_consen 335 LLLLFLFIPQSSFDILVSL--SSVGYLISYILVILAVLFLRRKRP 377 (426)
T ss_dssp HHHHTTTSSSSHHHHHHHH--HHHHTHHHHHHHHHHHHHTHHHSC
T ss_pred HHHHHHhhhHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHhhhcC
Confidence 221 234 45555554 444567778888888887776643
No 33
>COG0531 PotE Amino acid transporters [Amino acid transport and metabolism]
Probab=96.13 E-value=0.15 Score=48.44 Aligned_cols=170 Identities=13% Similarity=0.143 Sum_probs=86.7
Q ss_pred HHHHHHHHHHHHHHhhhhhhccCCCceEEEeecccccCcc-ccccccchhhhHHHHHHHHHHHHHhhhheecCCc-cccc
Q psy14213 71 LFVMVSGTVISLMDIFTAIQEDFHPKTQIVKIEHHMREPK-KFRQPIGVFNVGIVLTALLFAITGMCGYMKYGTA-AQGS 148 (302)
Q Consensus 71 ~~~~~~Gt~~~~~~~~~~~~~~~~~~~~~~~i~~~M~~p~-~~~~~~~v~~~s~~~~~~~y~~~g~~GY~~fG~~-~~~~ 148 (302)
...........++.+. ....+.-+|+|||+ +.+| .+..++..+..+|......-....+++ ....
T Consensus 202 ~~~~~~~~~~~~f~G~----------e~~~~~a~E~knp~r~ip~---aii~~~~~~~~~y~~~~~~~~~~~~~~~~~~~ 268 (466)
T COG0531 202 GILAAILLAFFAFTGF----------EAIATLAEEVKNPKRTIPR---AIILSLLIVLILYILGALVIVGVLPAGDLAAS 268 (466)
T ss_pred HHHHHHHHHHHHhhcH----------HHHHHHHHHhcCccccccH---HHHHHHHHHHHHHHHHHHHHHhCccHHHHhcc
Confidence 3444455556677777 55557779999995 4466 888999999999998887766666642 2211
Q ss_pred hhccccc--------CchHHHHHHHHHHHHHHHhhhcchhcHHHHHHHhhhhhc-ccc----ccccchhhhhhhhHHHHH
Q psy14213 149 MTLNIAE--------DQIMAQIVKLLYAFVIFFSYPLQNFVPLELLWMNYIKQH-MVE----YSEKKKLIVEYVFREVIV 215 (302)
Q Consensus 149 il~n~p~--------~~~~~~~~~~~~~l~~~~sypL~~~p~~~~l~~~~~~~~-~~~----~~~~~~~~~~~~~r~~~~ 215 (302)
..+.|- ..+...+..+...+....+..-...-..+.++.. -+++ .|+ -.++.+...+...-..++
T Consensus 269 -~~~~p~~~~~~~~~g~~~~~~i~~~~~~~~~~~~~~~~~~~sR~~~~~-ardg~lP~~~~~~~~~~~~P~~a~~~~~ii 346 (466)
T COG0531 269 -APSAPLALAALFGGGNWGAIIIAILALLSLFGSLLAWILAVSRVLYAM-ARDGLLPKFFAKVNPKGRTPVIALILTGII 346 (466)
T ss_pred -CCCccHHHHHHHcCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HhCCCccHHHHHhCCCCCCCHHHHHHHHHH
Confidence 111111 1234444444445554444322222333333322 1111 111 001111122222212111
Q ss_pred HHHHHHHHhc----CchhHHHHHhhhHHhhhHHHHhhHHHHHHHhccc
Q psy14213 216 LITWAFALVI----PHLDLLISLFGAFCLASLGIIFPAAIHILVLRHE 259 (302)
Q Consensus 216 ~~~~~iA~~i----P~~~~v~~lvGs~~~~~l~fi~P~l~~l~~~~~~ 259 (302)
.. .+.... ..++.+.++ +.....+.|.++.+..++.++++
T Consensus 347 ~~--~l~~~~~~~~~~~~~l~~~--~~~~~~~~y~~~~~~~~~~~~~~ 390 (466)
T COG0531 347 SL--ILLLLFPLSSIAFNALVSL--ASVAFLIAYLLVALALLVLRRKK 390 (466)
T ss_pred HH--HHHHHhhccccHHHHHHHH--HHHHHHHHHHHHHHHHHHHhhcC
Confidence 11 122222 234555555 45557789999999888877663
No 34
>PRK11387 S-methylmethionine transporter; Provisional
Probab=96.12 E-value=0.12 Score=49.59 Aligned_cols=46 Identities=15% Similarity=0.023 Sum_probs=34.6
Q ss_pred HHHHHHhhhhhhccCCCceEEEeecccccCccc-cccccchhhhHHHHHHHHHHHHHhhh
Q psy14213 79 VISLMDIFTAIQEDFHPKTQIVKIEHHMREPKK-FRQPIGVFNVGIVLTALLFAITGMCG 137 (302)
Q Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~i~~~M~~p~~-~~~~~~v~~~s~~~~~~~y~~~g~~G 137 (302)
..+++.+. ......-+|+|||+| .+| .+..++..+..+|.......
T Consensus 215 ~~faf~G~----------e~~~~~a~E~knP~r~iPr---Ai~~~~~~~~~~y~~~~~~~ 261 (471)
T PRK11387 215 VNFAFSGT----------ELIGIAAGETENPAKVIPV---AIRTTIARLVIFFVGTVLVL 261 (471)
T ss_pred HHHHHcCH----------HHHHHHHHHhcChhhHHHH---HHHHHHHHHHHHHHHHHHHH
Confidence 45566677 556688899999974 566 88888888888898876543
No 35
>PRK11357 frlA putative fructoselysine transporter; Provisional
Probab=96.07 E-value=0.18 Score=47.94 Aligned_cols=48 Identities=8% Similarity=0.169 Sum_probs=37.1
Q ss_pred HHHHHHHHHhhhhhhccCCCceEEEeecccccCcc-ccccccchhhhHHHHHHHHHHHHHhh
Q psy14213 76 SGTVISLMDIFTAIQEDFHPKTQIVKIEHHMREPK-KFRQPIGVFNVGIVLTALLFAITGMC 136 (302)
Q Consensus 76 ~Gt~~~~~~~~~~~~~~~~~~~~~~~i~~~M~~p~-~~~~~~~v~~~s~~~~~~~y~~~g~~ 136 (302)
.....+++.+. ......-+|+|||+ +.+| .+..++.++.++|......
T Consensus 201 ~~~~~~af~G~----------e~~~~~a~E~k~P~r~iP~---Ai~~~~~i~~~~Y~l~~~~ 249 (445)
T PRK11357 201 ISATSWSYTGM----------ASICYMTGEIKNPGKTMPR---ALIGSCLLVLVLYTLLALV 249 (445)
T ss_pred HHHHHHHHhhH----------HHHHhhHHHhcCccccchH---HHHHHHHHHHHHHHHHHHH
Confidence 34456677777 56668899999997 4566 9999999999999887654
No 36
>KOG1287|consensus
Probab=95.82 E-value=0.2 Score=47.74 Aligned_cols=175 Identities=9% Similarity=0.103 Sum_probs=100.9
Q ss_pred hhHHHHHHHHHHHHHHhhhhhhccCCCceEEEeecccccCcc-ccccccchhhhHHHHHHHHHHHHHhhhheecCCcccc
Q psy14213 69 FGLFVMVSGTVISLMDIFTAIQEDFHPKTQIVKIEHHMREPK-KFRQPIGVFNVGIVLTALLFAITGMCGYMKYGTAAQG 147 (302)
Q Consensus 69 ~~~~~~~~Gt~~~~~~~~~~~~~~~~~~~~~~~i~~~M~~p~-~~~~~~~v~~~s~~~~~~~y~~~g~~GY~~fG~~~~~ 147 (302)
.+.+.+.+-+..+++++- ..+=.+-+|+|||+ .+|+ ++..++.++++.|+.+=+..+-.- +.+
T Consensus 203 ~g~i~lafysglfa~~GW----------d~lN~vteEiknP~ktLP~---Ai~isi~lvt~iYil~NvAy~~vl---s~~ 266 (479)
T KOG1287|consen 203 VGNIALAFYSGLFAFSGW----------DYLNYVTEEIKNPRRTLPR---AILISIPLVTVIYVLVNVAYFTVL---SPD 266 (479)
T ss_pred hHHHHHHHHHhhhcccCc----------hhhccchHhhcCccccchH---HHHHhhHHHHHHHHHhHhheeEec---CHH
Confidence 345556666666666666 66668889999995 5566 999999999999998866544322 122
Q ss_pred chhcc------ccc--CchHHHHHHHHHHHHHHHhhhcchhcHHHHHHHhhhhh-ccccccccchhhhh-hhhHHHHHHH
Q psy14213 148 SMTLN------IAE--DQIMAQIVKLLYAFVIFFSYPLQNFVPLELLWMNYIKQ-HMVEYSEKKKLIVE-YVFREVIVLI 217 (302)
Q Consensus 148 ~il~n------~p~--~~~~~~~~~~~~~l~~~~sypL~~~p~~~~l~~~~~~~-~~~~~~~~~~~~~~-~~~r~~~~~~ 217 (302)
+++.+ +.+ -+.+..+.....+++.+-+.--.++...+.+... -++ +.++.=...+.+.. =.........
T Consensus 267 e~l~S~aVav~Fa~~~~G~~~~~ip~~ValS~~G~~n~~ifs~SR~~~~~-areG~LP~~~s~i~~~~~TP~~allf~~~ 345 (479)
T KOG1287|consen 267 EILSSDAVAVTFADRILGVFAWAIPFSVALSLIGSLNSVIFSSSRLFYAG-AREGHLPAFFSMISVRRFTPRPALLFSGL 345 (479)
T ss_pred HhcccchHHHHHHHHhccchHHHHHHHHHHHhhhhhhhHHHHHHHHHHHH-HHccCccHHHHhhcCCCCCChHHHHHHHH
Confidence 22211 110 0122244445555555444433444444444333 111 11100000011110 1122333344
Q ss_pred HHHHHHhcCchhHHHHHhhhHHhhhHHHHhhHHHHHHHhcccc
Q psy14213 218 TWAFALVIPHLDLLISLFGAFCLASLGIIFPAAIHILVLRHEK 260 (302)
Q Consensus 218 ~~~iA~~iP~~~~v~~lvGs~~~~~l~fi~P~l~~l~~~~~~~ 260 (302)
..++...+.|++.+++.++=.-.....+.+=+++++|.++++.
T Consensus 346 ~~i~~~~~~d~~~LIny~sf~~~l~~~l~~~gll~lR~k~p~~ 388 (479)
T KOG1287|consen 346 LSIVLSLIGDFDQLINYVSFAYWLFRGLSMAGLLWLRWKHPPL 388 (479)
T ss_pred HHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCC
Confidence 4555556779999999999888888889999999999887764
No 37
>PRK10435 cadB lysine/cadaverine antiporter; Provisional
Probab=95.81 E-value=0.65 Score=44.10 Aligned_cols=50 Identities=8% Similarity=-0.008 Sum_probs=37.4
Q ss_pred HHHHHHHHHhhhhhhccCCCceEEEeecccccCcc-ccccccchhhhHHHHHHHHHHHHHhhhh
Q psy14213 76 SGTVISLMDIFTAIQEDFHPKTQIVKIEHHMREPK-KFRQPIGVFNVGIVLTALLFAITGMCGY 138 (302)
Q Consensus 76 ~Gt~~~~~~~~~~~~~~~~~~~~~~~i~~~M~~p~-~~~~~~~v~~~s~~~~~~~y~~~g~~GY 138 (302)
.....+++.+. ......-+|+|||+ +.+| .+..+..++.++|......-.
T Consensus 193 ~~~~~faf~G~----------E~~~~~a~E~knP~r~iPr---Ai~~~~~iv~ilYil~~~~~~ 243 (435)
T PRK10435 193 ILLCLWAFVGV----------ESAAVSTGMVKNPKRTVPL---ATMLGTGLAGIIYIAATQVIS 243 (435)
T ss_pred HHHHHHHHhhH----------HHHHHHHHHhhCccccccH---HHHHHHHHHHHHHHHHHHHHH
Confidence 34455566666 44457788999995 6777 999999999999998876543
No 38
>TIGR01773 GABAperm gamma-aminobutyrate permease. GabP is highly homologous to amino acid permeases from B. subtilis, E. coli, as well as to other members of the amino acid permease family (pfam00324). A member of the APC (amine-polyamine-choline) transporter superfamily, GABA permease possesses a "consensus amphiphatic region" (CAR) found to be evolutionarily conserved within this transport family. This amphiphatic region is located between helix 8 and cytoplasmic loop 8-9, forming a potential channel domain and suggested to play a significant role in ligand recognition and translocation. Unique to GABA permeases, a conserved cysteine residue (CYS-300, E.coli) located at the beginning of the amphiphatic domain, has been determined to be critical for catalytic specificity.
Probab=95.75 E-value=0.25 Score=47.17 Aligned_cols=54 Identities=6% Similarity=-0.092 Sum_probs=36.8
Q ss_pred HHHHHHHHHHHHHhhhhhhccCCCceEEEeecccccCcc-ccccccchhhhHHHHHHHHHHHHHhhhh
Q psy14213 72 FVMVSGTVISLMDIFTAIQEDFHPKTQIVKIEHHMREPK-KFRQPIGVFNVGIVLTALLFAITGMCGY 138 (302)
Q Consensus 72 ~~~~~Gt~~~~~~~~~~~~~~~~~~~~~~~i~~~M~~p~-~~~~~~~v~~~s~~~~~~~y~~~g~~GY 138 (302)
+........+++.+. ......-+|+|||+ +.|| ++..++.....+|........
T Consensus 203 ~~~a~~~~~~af~G~----------e~~~~~a~E~k~P~r~iPr---Ai~~~~~~~~~~y~l~~~~~~ 257 (452)
T TIGR01773 203 VLLAILVTMFSFMGT----------EIVTIAAAESSNPIKSITR---ATNSVIWRIIVFYLGSIFIVV 257 (452)
T ss_pred HHHHHHHHHHHhccH----------HHHhHHHHhhcChhhHHHH---HHHHHHHHHHHHHHHHHHHHe
Confidence 334444455666677 56668899999996 4566 777777778888887644433
No 39
>PRK10580 proY putative proline-specific permease; Provisional
Probab=95.74 E-value=0.24 Score=47.33 Aligned_cols=48 Identities=13% Similarity=0.056 Sum_probs=32.8
Q ss_pred HHHHHHHHHhhhhhhccCCCceEEEeecccccCccc-cccccchhhhHHHHHHHHHHHHHhh
Q psy14213 76 SGTVISLMDIFTAIQEDFHPKTQIVKIEHHMREPKK-FRQPIGVFNVGIVLTALLFAITGMC 136 (302)
Q Consensus 76 ~Gt~~~~~~~~~~~~~~~~~~~~~~~i~~~M~~p~~-~~~~~~v~~~s~~~~~~~y~~~g~~ 136 (302)
.....+++.+. ......-+|+|||+| .+| .+..+...+.++|......
T Consensus 205 ~~~~~fsf~G~----------e~~~~~a~E~knP~k~iPr---Ai~~~~~~~~~~y~~~~~~ 253 (457)
T PRK10580 205 LQMVMFAYGGI----------EIIGITAGEAKDPEKSIPR---AINSVPMRILVFYVGTLFV 253 (457)
T ss_pred HHHHHHHHhCH----------HHHHHHHHHhcChhhHHHH---HHHHHHHHHHHHHHHHHHH
Confidence 33455666777 455578899999975 556 7767777777778766443
No 40
>TIGR00906 2A0303 cationic amino acid transport permease.
Probab=95.71 E-value=0.2 Score=49.33 Aligned_cols=163 Identities=12% Similarity=0.056 Sum_probs=83.3
Q ss_pred HHHHHHHHHhhhhhhccCCCceEEEeecccccCccc-cccccchhhhHHHHHHHHHHHHHhhhheecCCc---cccch--
Q psy14213 76 SGTVISLMDIFTAIQEDFHPKTQIVKIEHHMREPKK-FRQPIGVFNVGIVLTALLFAITGMCGYMKYGTA---AQGSM-- 149 (302)
Q Consensus 76 ~Gt~~~~~~~~~~~~~~~~~~~~~~~i~~~M~~p~~-~~~~~~v~~~s~~~~~~~y~~~g~~GY~~fG~~---~~~~i-- 149 (302)
.....+++.|. ..+...-+|+|||+| .+| .+..++.+++++|..+...--..-+.+ .++.+
T Consensus 237 ~~~~~faf~Gf----------d~v~~~aeE~knP~r~iP~---aii~sl~i~~vlY~lv~~~l~~~vp~~~l~~~~p~~~ 303 (557)
T TIGR00906 237 AATCFFAFIGF----------DAIATTGEEVKNPQRAIPI---GIVTSLLVCFVAYFLMSAALTLMMPYYLLDPDAPFPV 303 (557)
T ss_pred HHHHHHHHhhH----------HHHHHhHHhccCccccccH---HHHHHHHHHHHHHHHHHHHHhccccHHHhCcCcHHHH
Confidence 33455677777 555688899999975 666 999999999999998865432222211 11111
Q ss_pred -hcccccCchHHHHHHHHHHHHHHHhhhcchhcHHHHHHHhhhhhc-----cccccccchhhhhhhhHHHHHHHHHHHHH
Q psy14213 150 -TLNIAEDQIMAQIVKLLYAFVIFFSYPLQNFVPLELLWMNYIKQH-----MVEYSEKKKLIVEYVFREVIVLITWAFAL 223 (302)
Q Consensus 150 -l~n~p~~~~~~~~~~~~~~l~~~~sypL~~~p~~~~l~~~~~~~~-----~~~~~~~~~~~~~~~~r~~~~~~~~~iA~ 223 (302)
..... .++...+..++.......+.--.++...+.++.. -+++ +.+-.++.+...+..+ ...+.+.+++.
T Consensus 304 a~~~~g-~~~~~~ii~~~~~~~~~~sl~~~~~~~sRil~am-arDGlLP~~fakv~~r~~tP~~Ail--~~~iv~~il~~ 379 (557)
T TIGR00906 304 AFEYVG-WGPAKYIVAVGALCGMSTSLLGGMFPLPRVIYAM-ARDGLLFKWLAQINSKTKTPINATV--VSGAIAALMAF 379 (557)
T ss_pred HHHHcC-chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HcCCCccHHHhccCCCCCCcHHHHH--HHHHHHHHHHH
Confidence 11111 1333444444444444444333444555555443 2211 1110011111111111 11122223333
Q ss_pred hcCchhHHHHHhhhHHhhhHHHHhhHHHHHHHhcc
Q psy14213 224 VIPHLDLLISLFGAFCLASLGIIFPAAIHILVLRH 258 (302)
Q Consensus 224 ~iP~~~~v~~lvGs~~~~~l~fi~P~l~~l~~~~~ 258 (302)
+.+++.+.++. ..+..+.|.++++..+.++++
T Consensus 380 -~~~~~~l~~l~--sig~ll~y~lv~~~~l~lR~~ 411 (557)
T TIGR00906 380 -LFDLKALVDLL--SIGTLLAYSLVAACVLILRYQ 411 (557)
T ss_pred -HcCHHHHHHHH--HHHHHHHHHHHHHHHHHhhcc
Confidence 34577777763 345678999998877776643
No 41
>TIGR00905 2A0302 transporter, basic amino acid/polyamine antiporter (APA) family. This family includes several families of antiporters that, rather commonly, are encoded next to decarboxylases that convert one of the antiporter substrates into the other. This arrangement allows a cycle that can remove proteins from the cytoplasm and thereby protect against acidic conditions.
Probab=95.66 E-value=0.56 Score=45.10 Aligned_cols=49 Identities=4% Similarity=0.030 Sum_probs=34.8
Q ss_pred HHHHHHHHhhhhhhccCCCceEEEeecccccCccccccccchhhhHHHHHHHHHHHHHhhhh
Q psy14213 77 GTVISLMDIFTAIQEDFHPKTQIVKIEHHMREPKKFRQPIGVFNVGIVLTALLFAITGMCGY 138 (302)
Q Consensus 77 Gt~~~~~~~~~~~~~~~~~~~~~~~i~~~M~~p~~~~~~~~v~~~s~~~~~~~y~~~g~~GY 138 (302)
....+++.+. ......-+|+||+++.+| .+..+..++.++|........
T Consensus 206 ~~~~~af~G~----------e~~~~~a~E~k~~r~iPr---ai~~~~~i~~~~Yil~~~~~~ 254 (473)
T TIGR00905 206 LVTLWVFIGI----------EGAVVSSGRAKNKSDVGK---ATVLGTLGALVIYILITLLSL 254 (473)
T ss_pred HHHHHHHHhH----------HHHHHHHHHHhccccchH---HHHHHHHHHHHHHHHHHHHHH
Confidence 3355566666 344466678888556677 999999999999998765533
No 42
>TIGR00913 2A0310 amino acid permease (yeast).
Probab=95.61 E-value=0.41 Score=45.98 Aligned_cols=49 Identities=8% Similarity=-0.014 Sum_probs=35.7
Q ss_pred HHHHHHHHHHhhhhhhccCCCceEEEeecccccCcc-ccccccchhhhHHHHHHHHHHHHHhh
Q psy14213 75 VSGTVISLMDIFTAIQEDFHPKTQIVKIEHHMREPK-KFRQPIGVFNVGIVLTALLFAITGMC 136 (302)
Q Consensus 75 ~~Gt~~~~~~~~~~~~~~~~~~~~~~~i~~~M~~p~-~~~~~~~v~~~s~~~~~~~y~~~g~~ 136 (302)
......+++.+. ......-+|+|||+ +.+| ++..+...+..+|......
T Consensus 202 ~~~~~~~af~G~----------e~~~~~a~E~knP~r~iPr---ai~~~~~~~~~~Y~l~~~~ 251 (478)
T TIGR00913 202 VFVTAAFSFGGT----------ELVALTAGEAANPRKSIPR---AAKRTFWRILVFYILTLFL 251 (478)
T ss_pred HHHHHHhhhccH----------HHHHHHHHhhcChhhHHHH---HHHHHHHHHHHHHHHHHHH
Confidence 333445566676 45557889999996 4566 8889999999999987543
No 43
>TIGR00908 2A0305 ethanolamine permease. The three genes used as the seed for this model (from Burkholderia pseudomallei, Pseudomonas aeruginosa and Clostridium acetobutylicum are all adjacent to genes for the catabolism of ethanolamine. Most if not all of the hits to this model have a similar arrangement of genes. This group is a member of the Amino Acid-Polyamine-Organocation (APC) Superfamily.
Probab=95.53 E-value=0.46 Score=45.12 Aligned_cols=44 Identities=14% Similarity=0.051 Sum_probs=31.9
Q ss_pred HHHHHHhhhhhhccCCCceEEEeecccccCcc-ccccccchhhhHHHHHHHHHHHHHh
Q psy14213 79 VISLMDIFTAIQEDFHPKTQIVKIEHHMREPK-KFRQPIGVFNVGIVLTALLFAITGM 135 (302)
Q Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~i~~~M~~p~-~~~~~~~v~~~s~~~~~~~y~~~g~ 135 (302)
..+++.+. ......-+|+|||+ +.+| .+..+..++..+|...-.
T Consensus 200 ~~~af~G~----------e~~~~~aeE~k~P~r~ipr---ai~~s~~~~~~~~~~~~~ 244 (442)
T TIGR00908 200 AIWFFLAV----------EGVAMAAEETKNPKRDIPR---GLIGAILTLLALAAGILV 244 (442)
T ss_pred HHHHHHHH----------HHHHHHHHHhcCcccccCH---HHHHHHHHHHHHHHHHHH
Confidence 34566666 45557788999996 4666 888888888888876644
No 44
>PRK10836 lysine transporter; Provisional
Probab=95.23 E-value=0.59 Score=45.14 Aligned_cols=46 Identities=7% Similarity=-0.095 Sum_probs=34.4
Q ss_pred HHHHHhhhhhhccCCCceEEEeecccccCcc-ccccccchhhhHHHHHHHHHHHHHhhhh
Q psy14213 80 ISLMDIFTAIQEDFHPKTQIVKIEHHMREPK-KFRQPIGVFNVGIVLTALLFAITGMCGY 138 (302)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~i~~~M~~p~-~~~~~~~v~~~s~~~~~~~y~~~g~~GY 138 (302)
.+++.+. ......-+|+|||+ +.+| ++..++..+.++|......-.
T Consensus 215 ~faf~G~----------e~~~~~a~E~knP~r~iPr---Ai~~~~~~v~~~Yvl~~~~~~ 261 (489)
T PRK10836 215 GFSFQGT----------ELIGIAAGESEDPAKNIPR---AVRQVFWRILLFYVFAILIIS 261 (489)
T ss_pred HHHHccH----------HHHHHHHHHhcCHHHHHHH---HHHHHHHHHHHHHHHHHHHHh
Confidence 4566677 55557889999996 4556 888899999999998765433
No 45
>PRK15238 inner membrane transporter YjeM; Provisional
Probab=94.99 E-value=0.8 Score=44.32 Aligned_cols=45 Identities=7% Similarity=0.160 Sum_probs=33.7
Q ss_pred HHHHHHhhhhhhccCCCceEEEeecccccCcc-ccccccchhhhHHHHHHHHHHHHHhh
Q psy14213 79 VISLMDIFTAIQEDFHPKTQIVKIEHHMREPK-KFRQPIGVFNVGIVLTALLFAITGMC 136 (302)
Q Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~i~~~M~~p~-~~~~~~~v~~~s~~~~~~~y~~~g~~ 136 (302)
..+++.+. ......-+|+|||+ +.+| .+..+...+..+|....++
T Consensus 220 ~~~~f~G~----------e~~~~~a~E~~~p~~~~p~---ai~~~~~~~~~~y~l~~~~ 265 (496)
T PRK15238 220 AIFAYGGI----------EAVGGLVDKTENPEKNFPK---GIIIAAIVISIGYSLAIFL 265 (496)
T ss_pred HHHHHHhH----------HHHHHHHHhccCCCccccH---HHHHHHHHHHHHHHHHHHH
Confidence 34566666 45567889999996 4666 8999999999999876443
No 46
>TIGR00910 2A0307_GadC glutamate:gamma-aminobutyrate antiporter. Lowered cutoffs from 1000/500 to 800/300, promoted from subfamily to equivalog, and put into a Genome Property DHH 9/1/2009
Probab=94.89 E-value=0.96 Score=43.98 Aligned_cols=35 Identities=14% Similarity=0.182 Sum_probs=27.2
Q ss_pred eEEEeecccccCcc-ccccccchhhhHHHHHHHHHHHHH
Q psy14213 97 TQIVKIEHHMREPK-KFRQPIGVFNVGIVLTALLFAITG 134 (302)
Q Consensus 97 ~~~~~i~~~M~~p~-~~~~~~~v~~~s~~~~~~~y~~~g 134 (302)
......-+|+|||+ +++| .+..++.++.++|....
T Consensus 211 E~~a~~a~E~knP~r~~Pr---Ai~~~~i~~~~l~~l~~ 246 (507)
T TIGR00910 211 EASASHINELENPGRDYPL---AMILLMIAAICLDAIGG 246 (507)
T ss_pred HHHHHHHHHccCCcccccH---HHHHHHHHHHHHHHHHH
Confidence 45557789999996 5777 88888888888887643
No 47
>PF01490 Aa_trans: Transmembrane amino acid transporter protein; InterPro: IPR013057 This transmembrane region is found in many amino acid transporters including P34579 from SWISSPROT (UNC-47) and P40501 from SWISSPROT (MTR). UNC-47 encodes a vesicular amino butyric acid (GABA) transporter, (VGAT) and is is predicted to have 10 transmembrane domains UNC47_CAEEL []. MTR is an N system amino acid transporter system protein involved in methyltryptophan resistance MTR_NEUCR. Other members of this family include proline transporters and amino acid transporters whose specificity has not yet been identified.
Probab=94.54 E-value=0.028 Score=52.62 Aligned_cols=72 Identities=29% Similarity=0.579 Sum_probs=47.9
Q ss_pred hhhhhhhcCChhHHHHHHHHHHHHHhHHHHHHHHHHHHhhccccceeeeeee-eeccchhhhhhHHHHHHHHHH
Q psy14213 8 RGAFALVIPHLDLLISLFGAFCLASLGIIFPATIHILVLRHERIGFGFLNWV-LFKDIFLIAFGLFVMVSGTVI 80 (302)
Q Consensus 8 ~~~~a~~iP~l~~~isl~Ga~~~~~L~li~P~~i~i~~~~~~~~g~~~~~~~-~~k~i~~~~~~~~~~~~Gt~~ 80 (302)
+.++|..+|+++.+++++||++.+.+++++|+.+.....+.+....... +. ...+.....+|......|++.
T Consensus 334 ~~~iA~~vp~~~~i~~l~Ga~~~~~i~fi~P~l~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~g~~~~~~~~~~ 406 (409)
T PF01490_consen 334 SFLIAIFVPNFGDIISLVGALFGSFISFILPALLYLKLFKRKRNSFGWW-WILSILNWIIIVFGVVLMVFGTYQ 406 (409)
T ss_pred hhhhhhhccchhhhhcccchHHHHhHHHHHHHHHHHHhhccccccccee-ehhhccceEEEEEeeehhHHhHHH
Confidence 4678899999999999999999999999999999776544432211111 10 011223333566666666654
No 48
>TIGR00911 2A0308 L-type amino acid transporter.
Probab=94.33 E-value=0.7 Score=44.74 Aligned_cols=53 Identities=8% Similarity=0.176 Sum_probs=39.4
Q ss_pred HHHHHHHHHHHHHhhhhhhccCCCceEEEeecccccCcc-ccccccchhhhHHHHHHHHHHHHHhhh
Q psy14213 72 FVMVSGTVISLMDIFTAIQEDFHPKTQIVKIEHHMREPK-KFRQPIGVFNVGIVLTALLFAITGMCG 137 (302)
Q Consensus 72 ~~~~~Gt~~~~~~~~~~~~~~~~~~~~~~~i~~~M~~p~-~~~~~~~v~~~s~~~~~~~y~~~g~~G 137 (302)
+........+++.+. .......+|+|||+ +.+| ++..+..++.++|......-
T Consensus 237 ~~~a~~~~~~af~G~----------e~~~~~a~E~knP~r~iPr---Ai~~s~~~v~~~Y~l~~~a~ 290 (501)
T TIGR00911 237 IVLAFYSGIWAYGGW----------NYLNFVTEEVKNPYRTLPI---AIIISMPIVTFIYVLTNIAY 290 (501)
T ss_pred HHHHHHHHHHHHHhH----------HHHhhhHHHhcCchhhhHH---HHHHHHHHHHHHHHHHHHHH
Confidence 333444556677777 56667899999995 4666 99999999999999885443
No 49
>TIGR00930 2a30 K-Cl cotransporter.
Probab=93.75 E-value=1.9 Score=45.31 Aligned_cols=52 Identities=12% Similarity=0.178 Sum_probs=36.8
Q ss_pred HHHHHHHHHHHHHhhhhhhccCCCceEEEeecccccCcc-ccccccchhhhHHHHHHHHHHHHHhh
Q psy14213 72 FVMVSGTVISLMDIFTAIQEDFHPKTQIVKIEHHMREPK-KFRQPIGVFNVGIVLTALLFAITGMC 136 (302)
Q Consensus 72 ~~~~~Gt~~~~~~~~~~~~~~~~~~~~~~~i~~~M~~p~-~~~~~~~v~~~s~~~~~~~y~~~g~~ 136 (302)
+...+|....++.++ -....+-.|+|||+ ..++ .+..+..+++++|+++.+.
T Consensus 282 f~~~~ai~F~A~tGi----------~agan~sgElKnP~r~IPr---atl~ai~i~~vlYllv~~~ 334 (953)
T TIGR00930 282 FFSLFGIFFPSVTGI----------LAGANISGDLKDPQKAIPK---GTLLAILTTTVVYLGSVVL 334 (953)
T ss_pred HHHHHHHHHHHHHHH----------HHHHHHHHhccChhhhhHH---HHHHHHHHHHHHHHHHHHH
Confidence 444555544455565 33345789999996 4566 8999999999999998753
No 50
>TIGR03428 ureacarb_perm permease, urea carboxylase system. A number of bacteria obtain nitrogen by biotin- and ATP-dependent urea degradation system distinct from urease. The two characterized proteins of this system are the enzymes urea carboxylase and allophanate hydrolase, but other, uncharacterized proteins co-occur as genes encoded nearby in multiple organisms. This family includes predicted permeases of the amino acid permease family, likely to transport either urea or a compound from which urea is derived. It is found so far only Actinobacteria, whereas a number of other species with the urea carboxylase have an adjacent ABC transporter operon.
Probab=93.73 E-value=2.5 Score=40.63 Aligned_cols=36 Identities=8% Similarity=0.147 Sum_probs=25.6
Q ss_pred eEEEeecccccCccc-cccccchhhhHHHHHHHHHHHHHh
Q psy14213 97 TQIVKIEHHMREPKK-FRQPIGVFNVGIVLTALLFAITGM 135 (302)
Q Consensus 97 ~~~~~i~~~M~~p~~-~~~~~~v~~~s~~~~~~~y~~~g~ 135 (302)
......-+|+|||+| .|| .+..+..+...+|...-+
T Consensus 230 e~~~~~aeE~knP~r~iPr---ai~~s~~i~~~~~~~~~~ 266 (475)
T TIGR03428 230 GSAGELSEETKNPRRVAPR---TILTALSVSALGGGLMIL 266 (475)
T ss_pred chHHHHHHHhcCcchhhhH---HHHHHHHHHHHHHHHHHH
Confidence 566688899999964 555 888888877665554433
No 51
>COG1914 MntH Mn2+ and Fe2+ transporters of the NRAMP family [Inorganic ion transport and metabolism]
Probab=89.08 E-value=14 Score=34.89 Aligned_cols=78 Identities=6% Similarity=0.070 Sum_probs=52.3
Q ss_pred hhhhhhhhHHHHHHHHHHHHHhcCchhHHHHHhhhHHhhhHHHHhhHHHHHHHhccccccCCcchHHHHHHHHHHHHH
Q psy14213 203 KLIVEYVFREVIVLITWAFALVIPHLDLLISLFGAFCLASLGIIFPAAIHILVLRHEKVSFGPLGWILIKDIALIVFG 280 (302)
Q Consensus 203 ~~~~~~~~r~~~~~~~~~iA~~iP~~~~v~~lvGs~~~~~l~fi~P~l~~l~~~~~~~~~~~~~~~~~~~~~~ii~~G 280 (302)
.+.+|...|....+.+.++.+..-+.+.++.+.+.+.+..+-+..+++..+..+|+...+...++|.+...|...++=
T Consensus 323 ~~~r~~i~~~~~~ip~~~i~i~~g~~~~lL~~sqvl~~~~lP~~~~~ll~~~~~k~~mg~~~~~~~~~~~~~~v~~~i 400 (416)
T COG1914 323 LWRRRLITRTFAIVPGLAIIILFGDPARLLVFSQVLLSVILPFALIPLLLLTSDKKLMGDYKNPRWLTVLGWIVVILI 400 (416)
T ss_pred hHhhHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHcChhhhhcccchHHHHHHHHHHHHHH
Confidence 456667777666666565555544999999999999988888888888877766652211334556555555554443
No 52
>KOG4303|consensus
Probab=87.21 E-value=0.35 Score=44.06 Aligned_cols=77 Identities=31% Similarity=0.433 Sum_probs=50.6
Q ss_pred chhhhhhhcCChhHHHHHHHHHHHHHhHHHHHHHHHHHHhhccccceeeeeeee-eccchhhhhhHHHHHHHHHHHHHHh
Q psy14213 7 YRGAFALVIPHLDLLISLFGAFCLASLGIIFPATIHILVLRHERIGFGFLNWVL-FKDIFLIAFGLFVMVSGTVISLMDI 85 (302)
Q Consensus 7 ~~~~~a~~iP~l~~~isl~Ga~~~~~L~li~P~~i~i~~~~~~~~g~~~~~~~~-~k~i~~~~~~~~~~~~Gt~~~~~~~ 85 (302)
.|..+|+-+||+..+++|+|++...+|.++.|+.-.+-..... ..|+. .+|..++..|....+.|.+-+..+-
T Consensus 441 fTllmAi~vPhf~~LMGl~Gs~TGtmLsFiwP~lFHl~ik~~~------L~~~e~~fD~~Ii~~G~~~~vsG~y~S~~~L 514 (524)
T KOG4303|consen 441 FTLLMAISVPHFVELMGLVGSITGTMLSFIWPALFHLYIKEKT------LNNFEKRFDQGIIIMGCSVCVSGVYFSSMEL 514 (524)
T ss_pred HHHHHHHHhHHHHHHHHhhcccccccHHHHHHHHHHHHHHHHh------hhhHHHhhheeEEEEeeeEEEEeEehhhHHH
Confidence 4778999999999999999999999999999998754332211 01111 1333444455555555665555555
Q ss_pred hhhh
Q psy14213 86 FTAI 89 (302)
Q Consensus 86 ~~~~ 89 (302)
++.+
T Consensus 515 i~A~ 518 (524)
T KOG4303|consen 515 IRAI 518 (524)
T ss_pred HHHH
Confidence 5444
No 53
>PF00324 AA_permease: Amino acid permease; InterPro: IPR004841 Amino acid permeases are integral membrane proteins involved in the transport of amino acids into the cell. A number of such proteins have been found to be evolutionary related [], [], []. These proteins seem to contain up to 12 transmembrane segments. The best conserved region in this family is located in the second transmembrane segment. This domain is found in a wide variety of permeases, as well as several hypothetical proteins. ; GO: 0006810 transport, 0055085 transmembrane transport, 0016020 membrane
Probab=85.06 E-value=1.3 Score=42.51 Aligned_cols=59 Identities=8% Similarity=0.124 Sum_probs=42.1
Q ss_pred HHHHHHHHHHHHHHhhhhhhccCCCceEEEeecccccCcc-ccccccchhhhHHHHHHHHHHHHHhhhheecC
Q psy14213 71 LFVMVSGTVISLMDIFTAIQEDFHPKTQIVKIEHHMREPK-KFRQPIGVFNVGIVLTALLFAITGMCGYMKYG 142 (302)
Q Consensus 71 ~~~~~~Gt~~~~~~~~~~~~~~~~~~~~~~~i~~~M~~p~-~~~~~~~v~~~s~~~~~~~y~~~g~~GY~~fG 142 (302)
.+........+++.+. ......-+|.|||+ ..|| ....++....++|.......-...|
T Consensus 201 ~~~~~~~~~~~af~G~----------e~~a~~a~E~k~P~k~IPr---a~~~~~~~~~v~y~~~~~~~~~~~~ 260 (478)
T PF00324_consen 201 GFFAALVFAFFAFVGF----------ESIAILAEEAKNPRKTIPR---ATLLSVLRIGVFYVLTSYALTLAVP 260 (478)
T ss_pred HHHHhhhhhhcccccc----------cccccccccCCCchhhhhh---HhhhhhhhhhhhhhhhhhhcccccC
Confidence 3444444555566666 67778899999996 4455 8889999999999987765444444
No 54
>TIGR00912 2A0309 spore germination protein (amino acid permease). This model describes spore germination protein GerKB and paralogs from Bacillus subtilis, Clostridium tetani, and other known or predicted endospore-forming members of the Firmicutes (low-GC Gram positive bacteria). Members show some similarity to amino acid permeases.
Probab=83.69 E-value=6.3 Score=36.17 Aligned_cols=145 Identities=13% Similarity=0.230 Sum_probs=76.0
Q ss_pred EEEeecccccCccccccccchhhhHHHHHHHHHHHHHhhhheecCCccccch-------hcccccC---chHHHHHHHHH
Q psy14213 98 QIVKIEHHMREPKKFRQPIGVFNVGIVLTALLFAITGMCGYMKYGTAAQGSM-------TLNIAED---QIMAQIVKLLY 167 (302)
Q Consensus 98 ~~~~i~~~M~~p~~~~~~~~v~~~s~~~~~~~y~~~g~~GY~~fG~~~~~~i-------l~n~p~~---~~~~~~~~~~~ 167 (302)
.......++|||++.+| ....+..++..+|...-...-..+|.+..++. .+...-. +..-.+.-...
T Consensus 197 i~~~~~~~~~~~~~~~k---~~~~~~~~~~~ly~~~~~~~i~~lg~~~~~~~~~P~~~~~~~i~~~~f~eR~e~~~~~~w 273 (359)
T TIGR00912 197 IFFLLFPLLSKKKKIKK---SIIKAIIIGVLLYILTTFVSISVFGGNVTKNLYWPTLELIKLINIGDFIERFELIVMTFW 273 (359)
T ss_pred HHHHHHHHhCChhhhHH---HHHHHHHHHHHHHHHHHHHHHheecHHHhhhhcccHHHHHHHhhHhHHHHHHHHHHHHHH
Confidence 34455677888888777 88999999999999888877777775432211 1111100 11111222223
Q ss_pred HHHHHHhhhcchhcHHHHHHHhhhhhccccccccchhhhhhhhHHHHHHHHHHHHHhcCchhHHHHHhhh---HHhhhHH
Q psy14213 168 AFVIFFSYPLQNFVPLELLWMNYIKQHMVEYSEKKKLIVEYVFREVIVLITWAFALVIPHLDLLISLFGA---FCLASLG 244 (302)
Q Consensus 168 ~l~~~~sypL~~~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~iA~~iP~~~~v~~lvGs---~~~~~l~ 244 (302)
......+..+..+...+.+.+. ++.+. .+....-.+. ....++ ..||-..-...... ..+....
T Consensus 274 ~~~~f~~~~~~~~~~~~~~~~~-~~~~~---------~~~~~~~~~~--~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~ 340 (359)
T TIGR00912 274 VFIIFVKIAFYLYIAVKGLSKL-FKKRK---------YSILILPVLM--VIFSIS-FFPDSSNQLFDYLEFLPIIAIVFF 340 (359)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH-hCCCC---------cchhHHHHHH--HHHHHH-HccchHHHHHHHHHHHHHHHHHHH
Confidence 3444555566667777776655 33221 1112221111 222222 35653222333322 3345667
Q ss_pred HHhhHHHHHHHhcc
Q psy14213 245 IIFPAAIHILVLRH 258 (302)
Q Consensus 245 fi~P~l~~l~~~~~ 258 (302)
+++|.++.+....+
T Consensus 341 ~~~P~ll~~i~~ik 354 (359)
T TIGR00912 341 LLLPLILFIIVKIK 354 (359)
T ss_pred HHHHHHHHHHHHHH
Confidence 78899887775543
No 55
>KOG1303|consensus
Probab=83.17 E-value=1.3 Score=42.15 Aligned_cols=37 Identities=35% Similarity=0.529 Sum_probs=33.6
Q ss_pred hhhhhhhcCChhHHHHHHHHHHHHHhHHHHHHHHHHH
Q psy14213 8 RGAFALVIPHLDLLISLFGAFCLASLGIIFPATIHIL 44 (302)
Q Consensus 8 ~~~~a~~iP~l~~~isl~Ga~~~~~L~li~P~~i~i~ 44 (302)
+..+|+.+|.++.+.||+||+....+..++|...-+.
T Consensus 361 ~~~vA~~~PfFg~l~~lvGa~~~~p~t~ilP~~~yl~ 397 (437)
T KOG1303|consen 361 TTFVALSFPFFGDLLSLVGAFLFWPLTFILPCLMYLL 397 (437)
T ss_pred HHHHHHhccccHhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6788999999999999999999999999999988543
No 56
>COG1457 CodB Purine-cytosine permease and related proteins [Nucleotide transport and metabolism]
Probab=77.27 E-value=52 Score=31.42 Aligned_cols=142 Identities=14% Similarity=0.085 Sum_probs=77.1
Q ss_pred EEEeecccccCccccccccchhhhHHHHHHHHHHHHHhhhheecCCcc-ccchhcccccCchHHHHHHHHHHHHHHHhhh
Q psy14213 98 QIVKIEHHMREPKKFRQPIGVFNVGIVLTALLFAITGMCGYMKYGTAA-QGSMTLNIAEDQIMAQIVKLLYAFVIFFSYP 176 (302)
Q Consensus 98 ~~~~i~~~M~~p~~~~~~~~v~~~s~~~~~~~y~~~g~~GY~~fG~~~-~~~il~n~p~~~~~~~~~~~~~~l~~~~syp 176 (302)
......+-+|+|+. ++.......+......+-...|...-.+=|+.. ..++...+ +.+...+.+...++...+--
T Consensus 212 ~~aDysRy~~~~t~-~~~~~~~~~G~~l~~~~~~ilGa~~a~a~g~~~~~~~~~~~~---G~~g~~~~lil~l~~~ttN~ 287 (442)
T COG1457 212 YAADYSRYAPSPTP-SKAFLAAVLGFFLGTSFMMILGAALAAAAGNADSIADVMLGL---GGFGLPAILILVLGTVTTNA 287 (442)
T ss_pred hhhhhhhhcCCCch-HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCchHHHHHHhc---ccHHHHHHHHHHHHHHhcCc
Confidence 34455566676663 331113344444555566677777777777655 22233322 22666777777777777777
Q ss_pred cchhcHHHHHHHhhhhhccccccccchhhhhhhhHHHHHHHHHHHHH----hcCchhHHHHHhhhHHhhhHHHHhhHHHH
Q psy14213 177 LQNFVPLELLWMNYIKQHMVEYSEKKKLIVEYVFREVIVLITWAFAL----VIPHLDLLISLFGAFCLASLGIIFPAAIH 252 (302)
Q Consensus 177 L~~~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~iA~----~iP~~~~v~~lvGs~~~~~l~fi~P~l~~ 252 (302)
.+++...-.+.+. .. +.+++.+.+...+. ..+++|+ +..+++.++.++|+.........+=-.+-
T Consensus 288 ~nlYsa~ls~~~i-~~--------~l~k~~~~v~~~v~--igt~la~~~~~f~~~f~~Fl~~i~~~i~P~~~I~iad~~~ 356 (442)
T COG1457 288 NNLYSAGLSFANI-IP--------KLSKVTRVVIAGVG--IGTLLALAGPFFYNFFENFLLLLGYFIPPWGGVMIADYFI 356 (442)
T ss_pred HHHHHHHHHHHHh-hh--------hhhhHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 7777766555443 21 11223333222221 2223333 46688888888888886666655544444
Q ss_pred HH
Q psy14213 253 IL 254 (302)
Q Consensus 253 l~ 254 (302)
.|
T Consensus 357 ~r 358 (442)
T COG1457 357 VR 358 (442)
T ss_pred Hh
Confidence 33
No 57
>TIGR00813 sss transporter, SSS family. have different numbers of TMSs. A 13 TMS topology with a periplasmic N-terminus and a cytoplasmic C-terminus has been experimentally determined for the proline:Na+ symporter, PutP, of E. coli.
Probab=67.77 E-value=52 Score=30.78 Aligned_cols=33 Identities=18% Similarity=0.223 Sum_probs=15.6
Q ss_pred cCccccccccchhhhHHHHHHHHHH---HHHhhhheecC
Q psy14213 107 REPKKFRQPIGVFNVGIVLTALLFA---ITGMCGYMKYG 142 (302)
Q Consensus 107 ~~p~~~~~~~~v~~~s~~~~~~~y~---~~g~~GY~~fG 142 (302)
|++++.+| ....+.......+. .+|+.++..|.
T Consensus 230 ks~~~~r~---~~~~~~~~~~~~~~~~~l~G~~a~~~~~ 265 (407)
T TIGR00813 230 KSAKHAKK---GCLISGVLKLLPMFGAVLPGLIARALYT 265 (407)
T ss_pred CCHHHHHH---hHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 34444444 55555444444444 34555554453
No 58
>KOG1305|consensus
Probab=64.04 E-value=6.1 Score=37.37 Aligned_cols=34 Identities=24% Similarity=0.441 Sum_probs=31.3
Q ss_pred hhhhhhhcCChhHHHHHHHHHHHHHhHHHHHHHH
Q psy14213 8 RGAFALVIPHLDLLISLFGAFCLASLGIIFPATI 41 (302)
Q Consensus 8 ~~~~a~~iP~l~~~isl~Ga~~~~~L~li~P~~i 41 (302)
+...|+.+|+++.+.+.+||-+...+++++|...
T Consensus 335 ~~l~ai~~p~i~~i~~~vGAT~~~~i~FI~P~~~ 368 (411)
T KOG1305|consen 335 TFLLAIFVPSIGTIFGFVGATSSTSISFILPALY 368 (411)
T ss_pred HHHHHHHhccHHHHHHHhhhhhhhhhHHHHHHHh
Confidence 5678999999999999999999999999999665
No 59
>TIGR00800 ncs1 NCS1 nucleoside transporter family. The NCS1 family consists of bacterial and yeast transporters for nucleobases including purines and pyrimidines. Members of this family possess twelve putative transmembrane a-helical spanners (TMSs). At least some of them have been shown to function in uptake by substrate:H+ symport mechanism.
Probab=61.52 E-value=1e+02 Score=29.21 Aligned_cols=46 Identities=15% Similarity=0.052 Sum_probs=30.7
Q ss_pred eEEEeecccccCccccccccchhhhHHHHHHHHHHHHHhhhhee----cCCcc
Q psy14213 97 TQIVKIEHHMREPKKFRQPIGVFNVGIVLTALLFAITGMCGYMK----YGTAA 145 (302)
Q Consensus 97 ~~~~~i~~~M~~p~~~~~~~~v~~~s~~~~~~~y~~~g~~GY~~----fG~~~ 145 (302)
.+.+...+-+|+|++-.+ ....++.........+|..+-.. +|+..
T Consensus 225 ~~~~DysRy~~~~~~~~~---~~~~~~~~~~~~~~~~g~~~a~~~~~~~g~~~ 274 (442)
T TIGR00800 225 TNAPDFTRFGKSKKTAIW---GQFLALPGGFTLTCFFGILGAAAAYAAYGEPY 274 (442)
T ss_pred cCchhhhhhcCCccchHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcc
Confidence 566777788888765344 45566667777777777776655 77653
No 60
>PF07981 Plasmod_MYXSPDY: Plasmodium repeat_MYXSPDY; InterPro: IPR012598 This repeat is found in two hypothetical Plasmodium proteins.
Probab=60.66 E-value=3.9 Score=19.61 Aligned_cols=11 Identities=45% Similarity=0.661 Sum_probs=8.1
Q ss_pred CCCCccchhhh
Q psy14213 1 MNFSSDYRGAF 11 (302)
Q Consensus 1 ~~~~~~~~~~~ 11 (302)
|-||+|||.-+
T Consensus 1 mY~SPdytL~~ 11 (17)
T PF07981_consen 1 MYFSPDYTLRL 11 (17)
T ss_pred CccCCCceEEE
Confidence 67899998543
No 61
>COG1113 AnsP Gamma-aminobutyrate permease and related permeases [Amino acid transport and metabolism]
Probab=55.34 E-value=1.3e+02 Score=28.77 Aligned_cols=52 Identities=10% Similarity=0.188 Sum_probs=36.0
Q ss_pred hhhhhhHHHHHHHHHHHHHhcCchhHHHHHhhhHHhhhHH--HHhhHHHHHHHhcc
Q psy14213 205 IVEYVFREVIVLITWAFALVIPHLDLLISLFGAFCLASLG--IIFPAAIHILVLRH 258 (302)
Q Consensus 205 ~~~~~~r~~~~~~~~~iA~~iP~~~~v~~lvGs~~~~~l~--fi~P~l~~l~~~~~ 258 (302)
+.-+....+...++.++.+..| +.++.++=+..+.... ..+=.+.|+|.+|.
T Consensus 336 ~~ai~~s~~~~~~~V~Lny~~P--~~vF~~v~s~s~~~~l~vW~~I~~s~l~~rk~ 389 (462)
T COG1113 336 VNAILLSAVVLLLGVVLNYILP--EKVFELVTSSSGLGLLFVWLMILLSQLKLRKA 389 (462)
T ss_pred HHHHHHHHHHHHHHHHHHhhcc--hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 4456777778888888888999 7777776665554443 33556778888773
No 62
>KOG4812|consensus
Probab=52.12 E-value=31 Score=29.84 Aligned_cols=78 Identities=18% Similarity=0.293 Sum_probs=46.5
Q ss_pred HHHHHHHHHHHHHhcCchhHHHHH---------hhhHHhhhHHHHhhHHHHHHHhccccccCCcchHHHHHHHHHHHHHH
Q psy14213 211 REVIVLITWAFALVIPHLDLLISL---------FGAFCLASLGIIFPAAIHILVLRHEKVSFGPLGWILIKDIALIVFGI 281 (302)
Q Consensus 211 r~~~~~~~~~iA~~iP~~~~v~~l---------vGs~~~~~l~fi~P~l~~l~~~~~~~~~~~~~~~~~~~~~~ii~~G~ 281 (302)
.-.+.+.+.++|..++.++-++.. -||.+|--++++= |..+-+...+-.+-...++++-|+++++|.
T Consensus 159 nd~~F~~af~vAflFnwIGFlltycl~tT~agRYGA~~GfGLsLik----wilIv~~sd~f~~y~n~q~wLwwi~~vlG~ 234 (262)
T KOG4812|consen 159 NDGIFMWAFIVAFLFNWIGFLLTYCLTTTHAGRYGAISGFGLSLIK----WILIVRFSDDFESYFNGQYWLWWIFLVLGL 234 (262)
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHhhHhhhhhhhhccchhhhe----eeEEeecccccccccccchHHHHHHHHHHH
Confidence 344555666677777777666655 3677776666654 333333222101111124677889999999
Q ss_pred HHHHHHHHHHH
Q psy14213 282 FIMVSGTVISI 292 (302)
Q Consensus 282 ~~~v~Gt~~si 292 (302)
+...-|++.-+
T Consensus 235 ll~lr~~i~Yi 245 (262)
T KOG4812|consen 235 LLFLRGFINYI 245 (262)
T ss_pred HHHHHHHHhHH
Confidence 99988887654
No 63
>PRK09442 panF sodium/panthothenate symporter; Provisional
Probab=48.68 E-value=2.5e+02 Score=26.92 Aligned_cols=29 Identities=14% Similarity=0.353 Sum_probs=15.3
Q ss_pred ccCccccccccchhhhHHHHHHHHHHHHHhhh
Q psy14213 106 MREPKKFRQPIGVFNVGIVLTALLFAITGMCG 137 (302)
Q Consensus 106 M~~p~~~~~~~~v~~~s~~~~~~~y~~~g~~G 137 (302)
.|++++.+| ....+......++....+.|
T Consensus 263 aks~~~a~~---~~~~~~~~~~~~~~~~~~~G 291 (483)
T PRK09442 263 YKDSKALHR---GIIIGTIVVGFLMFGMHLAG 291 (483)
T ss_pred cCCHHHHHH---HHHHHHHHHHHHHHHHHHHH
Confidence 455655555 55555555555555444444
No 64
>PF00474 SSF: Sodium:solute symporter family; InterPro: IPR001734 Sodium/substrate symport (or co-transport) is a widespread mechanism of solute transport across cytoplasmic membranes of pro- and eukaryotic cells. Thereby the energy stored in an inwardly directed electrochemical sodium gradient (sodium motive force, SMF) is used to drive solute accumulation against a concentration gradient. The SMF is generated by primary sodium pumps (e.g. sodium/potassium ATPases, sodium translocating respiratory chain complexes) or via the action of sodium/proton antiporters. Sodium/substrate transporters are grouped in different families based on sequence similarities [, ]. One of these families, known as the sodium:solute symporter family (SSSF), contains over a hundred members of pro- and eukaryotic origin []. The average hydropathy plot for SSSF proteins predicts 11 to 15 putative transmembrane domains (TMs) in alpha-helical conformation. A secondary structure model of PutP from Escherichia coli suggests the protein contains 13 TMs with the N terminus located on the periplasmic side of the membrane and the C terminus facing the cytoplasm. The results support the idea of a common topological motif for members of the SSSF. Transporters with a C-terminal extension are proposed to have an additional 14th TM. An ordered binding model of sodium/substrate transport suggests that sodium binds to the empty transporter first, thereby inducing a conformational alteration which increases the affinity of the transporter for the solute. The formation of the ternary complex induces another structural change that exposes sodium and substrate to the other site of the membrane. Substrate and sodium are released and the empty transporter re-orientates in the membrane allowing the cycle to start again.; GO: 0005215 transporter activity, 0006810 transport, 0055085 transmembrane transport, 0016020 membrane; PDB: 3DH4_D 2XQ2_A.
Probab=46.38 E-value=90 Score=29.09 Aligned_cols=46 Identities=22% Similarity=0.207 Sum_probs=21.7
Q ss_pred HHHHHHHHHHHHHhcCchhHHHHHhhhHHhhhHHHHhhHHHHHHHhcc
Q psy14213 211 REVIVLITWAFALVIPHLDLLISLFGAFCLASLGIIFPAAIHILVLRH 258 (302)
Q Consensus 211 r~~~~~~~~~iA~~iP~~~~v~~lvGs~~~~~l~fi~P~l~~l~~~~~ 258 (302)
..++.+++.+++...|+.+ +..+..-..+....-.+|+++ +.++|+
T Consensus 347 ~~v~~~i~~~la~~~~~~~-i~~~~~~~~~~~~~~~~~~~~-~gl~wk 392 (406)
T PF00474_consen 347 IVVIGIIAILLALFFPDSG-IIDLILFAFGILAAPFFPPLL-LGLYWK 392 (406)
T ss_dssp HHHHHHHHHHHGGGGGGSS-HHHHHHHHHTTTHHHHHHHHH-HHHH-T
T ss_pred EEeeHHhHHHHHhccccch-HHHHHHHHHHHHHHHHHHHHH-HhhccC
Confidence 3334445556666677753 444444333333333445543 244554
No 65
>PF01102 Glycophorin_A: Glycophorin A; InterPro: IPR001195 Proteins in this group are responsible for the molecular basis of the blood group antigens, surface markers on the outside of the red blood cell membrane. Most of these markers are proteins, but some are carbohydrates attached to lipids or proteins [Reid M.E., Lomas-Francis C. The Blood Group Antigen FactsBook Academic Press, London / San Diego, (1997)]. Glycophorin A (PAS-2) and glycophorin B (PAS-3) belong to the MNS blood group system and are associated with antigens that include M/N, S/s, U, He, Mi(a), M(c), Vw, Mur, M(g), Vr, M(e), Mt(a), St(a), Ri(a), Cl(a), Ny(a), Hut, Hil, M(v), Far, Mit, Dantu, Hop, Nob, En(a), ENKT, amongst others. Glycophorin A is the major sialoglycoprotein of the erythrocyte membrane []. Structurally, glycophorin A consists of an N-terminal extracellular domain, heavily glycosylated on serine and threonine residues, followed by a transmembrane region and a C-terminal cytoplasmic domain. Other glycophorins in this entry such as Glycophorin B and Glycophorin E represent minor sialoglycoproteins in the erythrocyte membrane.; GO: 0016021 integral to membrane; PDB: 2KPF_B 1AFO_B 2KPE_A.
Probab=45.74 E-value=43 Score=25.93 Aligned_cols=29 Identities=24% Similarity=0.358 Sum_probs=21.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Q psy14213 273 DIALIVFGIFIMVSGTVISIMDIFTAIAG 301 (302)
Q Consensus 273 ~~~ii~~G~~~~v~Gt~~si~~ii~~~~~ 301 (302)
.+..+++|++++++|+..-|.-.+++.++
T Consensus 65 ~i~~Ii~gv~aGvIg~Illi~y~irR~~K 93 (122)
T PF01102_consen 65 AIIGIIFGVMAGVIGIILLISYCIRRLRK 93 (122)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHS-
T ss_pred ceeehhHHHHHHHHHHHHHHHHHHHHHhc
Confidence 46788889999999988777666665543
No 66
>PF05805 L6_membrane: L6 membrane protein; InterPro: IPR008661 This family consists of several eukaryotic L6 membrane proteins. L6, IL-TMP, and TM4SF5 are cell surface proteins predicted to have four transmembrane domains. Previous sequence analysis led to their assignment as members of the tetraspanin superfamily it has now been found that that they are not significantly related to genuine tetraspanins, but instead constitute their own L6 family []. Several members of this family have been implicated in Homo sapiens cancer [, ].; GO: 0016021 integral to membrane
Probab=44.17 E-value=55 Score=27.54 Aligned_cols=68 Identities=15% Similarity=0.167 Sum_probs=46.1
Q ss_pred hHHHHHhhhHHhhhHHHHhhHHHHHHHhcccc------ccCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14213 229 DLLISLFGAFCLASLGIIFPAAIHILVLRHEK------VSFGPLGWILIKDIALIVFGIFIMVSGTVISIMDIFT 297 (302)
Q Consensus 229 ~~v~~lvGs~~~~~l~fi~P~l~~l~~~~~~~------~~~~~~~~~~~~~~~ii~~G~~~~v~Gt~~si~~ii~ 297 (302)
+...-+.|++.++-+..++|+...+...+++- ++-+ .|.......+...+|+++++.....|...+.+
T Consensus 44 s~~vw~f~Gi~GgGlmvl~pa~~~l~~~~~~cCgccg~~~c~-~r~~M~~Sil~a~igi~Ga~Yc~ivS~~aL~~ 117 (195)
T PF05805_consen 44 SCEVWYFGGIIGGGLMVLLPAIVFLAAGKRDCCGCCGNECCG-NRCGMFLSILFAAIGILGAGYCFIVSGLALSE 117 (195)
T ss_pred chhheecCccccchHHHHHHHHHHHHhCCCcccccccCcccc-cccchHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 33445668888899999999999999887631 0001 23345667777777888877777777666543
No 67
>KOG1286|consensus
Probab=43.32 E-value=1.5e+02 Score=29.26 Aligned_cols=172 Identities=11% Similarity=0.123 Sum_probs=85.1
Q ss_pred HHHHHHHHHHHHHHhhhhhhccCCCceEEEeecccccCcc-ccccccchhhhHHHHHHHHHHHHHhh-hhe-ecCCc-cc
Q psy14213 71 LFVMVSGTVISLMDIFTAIQEDFHPKTQIVKIEHHMREPK-KFRQPIGVFNVGIVLTALLFAITGMC-GYM-KYGTA-AQ 146 (302)
Q Consensus 71 ~~~~~~Gt~~~~~~~~~~~~~~~~~~~~~~~i~~~M~~p~-~~~~~~~v~~~s~~~~~~~y~~~g~~-GY~-~fG~~-~~ 146 (302)
.....+-+..+++.|.+.. -.--+|-|||+ ..|+ ....++..++.+|....+. |-. -|.|. ..
T Consensus 233 Gv~s~~~~~~fsf~G~e~v----------a~~a~E~kNP~k~IP~---ai~~s~~ri~~~Yi~~~~~l~l~vpy~~~~L~ 299 (554)
T KOG1286|consen 233 GVLSGAATAFFSFIGFELV----------ATTAEEAKNPRKAIPK---AIKQSLLRILLFYILSSIVLGLLVPYNDPRLD 299 (554)
T ss_pred eeeHHHHHHHHHHhhHHHH----------HHHHHhccCCcccccH---HHHHHHHHHHHHHHHHHHHheEEeccCccccC
Confidence 3344444555666666333 35567888885 4455 8999999999999988754 222 22221 21
Q ss_pred cchh--------cccccCchHHHHHHHHHHHHHHHhhhcchhcHHHHHHHhhhhhcc-ccccccchhhhhhhhHHHHH-H
Q psy14213 147 GSMT--------LNIAEDQIMAQIVKLLYAFVIFFSYPLQNFVPLELLWMNYIKQHM-VEYSEKKKLIVEYVFREVIV-L 216 (302)
Q Consensus 147 ~~il--------~n~p~~~~~~~~~~~~~~l~~~~sypL~~~p~~~~l~~~~~~~~~-~~~~~~~~~~~~~~~r~~~~-~ 216 (302)
++.. .+.+.-.....+.+.+..+.++.+---.+++..+.+... -+++. ++.=.+..+..+-...+.+. +
T Consensus 300 ~~~~~~spF~iai~~~~~k~~~~ivna~iL~~~~s~~n~~~y~~sR~l~am-A~~G~~Pk~f~~v~~~g~P~~a~~v~~~ 378 (554)
T KOG1286|consen 300 PGAALASPFVIAIGNAGAKYLPHIVNAGILIGLLSSLNSSLYAGSRVLYAL-AKDGLAPKFFARVDRRGVPLVAVLVSGL 378 (554)
T ss_pred CCCccccHHHHHHhccCccccchhhhHHHHHHHHHHHHHHhHHhHHHHHHH-HhcCCcchHHhhcCCCCCchhHHHHHHH
Confidence 1111 111111222235555555555555444667777777654 33221 10000000111112222222 2
Q ss_pred HHHHHHHhc-----CchhHHHHHhhhHHhhhHHHHhhHHHHHHHhcc
Q psy14213 217 ITWAFALVI-----PHLDLLISLFGAFCLASLGIIFPAAIHILVLRH 258 (302)
Q Consensus 217 ~~~~iA~~i-----P~~~~v~~lvGs~~~~~l~fi~P~l~~l~~~~~ 258 (302)
...+.++.. ..++.++++.| .++.+++..=++.|++.++.
T Consensus 379 ~~~l~~~~~~~~~~~~f~~L~~~~s--i~tl~~w~~i~~~~i~~R~a 423 (554)
T KOG1286|consen 379 FGALAALNFSLGAATVFNWLVNLSS--IGTLFAWTLVALSHLRFRYA 423 (554)
T ss_pred HHHHHHHHhccccchHHHHHHHHHh--HHHHHHHHHHHHHHeeeeec
Confidence 223333322 23588888855 34566666666777666543
No 68
>TIGR00796 livcs branched-chain amino acid uptake carrier. transmembrane helical spanners.
Probab=42.69 E-value=2.9e+02 Score=25.85 Aligned_cols=25 Identities=36% Similarity=0.624 Sum_probs=17.4
Q ss_pred chhHHHHHhhhHHhhhHHHHhhHHHHHHH
Q psy14213 227 HLDLLISLFGAFCLASLGIIFPAAIHILV 255 (302)
Q Consensus 227 ~~~~v~~lvGs~~~~~l~fi~P~l~~l~~ 255 (302)
.++.++++ +...+.+++|..+-+..
T Consensus 323 Gl~~Ii~~----~~PvL~~~YP~~i~lil 347 (378)
T TIGR00796 323 GLTQIISI----SIPVLMIIYPLAIVLIL 347 (378)
T ss_pred CHHHHHHH----HHHHHHHHHHHHHHHHH
Confidence 67777764 66777888888765553
No 69
>PF12794 MscS_TM: Mechanosensitive ion channel inner membrane domain 1
Probab=39.95 E-value=3e+02 Score=25.25 Aligned_cols=36 Identities=14% Similarity=0.148 Sum_probs=25.7
Q ss_pred hhhhHHHHHHHHHHHHHhhhheecCCccccchhccc
Q psy14213 118 VFNVGIVLTALLFAITGMCGYMKYGTAAQGSMTLNI 153 (302)
Q Consensus 118 v~~~s~~~~~~~y~~~g~~GY~~fG~~~~~~il~n~ 153 (302)
++..+...+.-.-..+...||........+++...+
T Consensus 49 al~~tll~alp~pl~~~~~g~~L~~~~~~~~~~~~l 84 (340)
T PF12794_consen 49 ALLLTLLLALPLPLLLLAIGYLLQFAAWSSPFSVAL 84 (340)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhccccCchHHHH
Confidence 677777777778888888898877655555555444
No 70
>PRK12488 acetate permease; Provisional
Probab=38.20 E-value=4e+02 Score=26.20 Aligned_cols=48 Identities=15% Similarity=0.175 Sum_probs=23.2
Q ss_pred hHHHHHHHHHHHHHhcCchhHHHHHhhhHHhhhHHHHhhHHHHHHHhccc
Q psy14213 210 FREVIVLITWAFALVIPHLDLLISLFGAFCLASLGIIFPAAIHILVLRHE 259 (302)
Q Consensus 210 ~r~~~~~~~~~iA~~iP~~~~v~~lvGs~~~~~l~fi~P~l~~l~~~~~~ 259 (302)
...++.+++..+|...|+.+ +..+++-..+...+..+|++ -+.++|++
T Consensus 408 ~~vvvgv~a~~~a~~~~~~~-i~~l~~~~~~~~a~~~~p~l-llgl~wkr 455 (549)
T PRK12488 408 ATLGIGLLAVVLGLMFESQN-IAFLSGLVLAIAASVNFPVL-FLSMFWKG 455 (549)
T ss_pred HHHHHHHHHHHHHHccCCCc-HHHHHHHHHHHHHHHHHHHH-HHHHHhCC
Confidence 33444455566776666522 23333322223334555764 34566654
No 71
>TIGR02358 thia_cytX probable hydroxymethylpyrimidine transporter CytX. On the basis of a phylogenomic study of thiamine biosythetic, salvage, and transporter genes and a highly conserved RNA element THI, this protein family has been identified as a probable transporter of hydroxymethylpyrimidine (HMP), the phosphorylated (by ThiD) form of which gets joined (by ThiE) to hydroxyethylthiazole phosphate to make thiamine phosphate.
Probab=37.46 E-value=3.4e+02 Score=25.23 Aligned_cols=128 Identities=9% Similarity=0.081 Sum_probs=59.0
Q ss_pred EeecccccCccccccccchhhhHHHHHHHHHHHHHhhhheecCCccccchhcccccCchHHHHHHHHHHHHHHHhhhcch
Q psy14213 100 VKIEHHMREPKKFRQPIGVFNVGIVLTALLFAITGMCGYMKYGTAAQGSMTLNIAEDQIMAQIVKLLYAFVIFFSYPLQN 179 (302)
Q Consensus 100 ~~i~~~M~~p~~~~~~~~v~~~s~~~~~~~y~~~g~~GY~~fG~~~~~~il~n~p~~~~~~~~~~~~~~l~~~~sypL~~ 179 (302)
+...+-.|+|++--. ....+..+...+...+|...-.+.|+. +..+-+.+. .....+-+...++...+-..+.
T Consensus 193 ~DysRy~k~~~~~~~---~~~~G~~i~~~~~~~~G~~~~~a~~~~---d~~~~~~~~-g~~~~~~~~~~l~~~~~n~~N~ 265 (386)
T TIGR02358 193 ADYTRFARNPRHVFL---GTVLGYFIGSCWMYFLGLAVTLATGQT---DIISILAGA-GLGIPALLIILLSTVTTTFMDI 265 (386)
T ss_pred cchhhhcCCCcceeh---HHHHHHHHHHHHHHHHHHHHHHhcCCC---CHHHHHHhc-cHHHHHHHHHHHhHHHHHHHHH
Confidence 344444566654333 455566667777777777666665543 222211111 1112233333444444445555
Q ss_pred hcHHHHHHHhhhhhccccccccchhhhhhhhHHHHHHHHHHHHH--hcCchhHHHHHhhhHHhhhHHHH
Q psy14213 180 FVPLELLWMNYIKQHMVEYSEKKKLIVEYVFREVIVLITWAFAL--VIPHLDLLISLFGAFCLASLGII 246 (302)
Q Consensus 180 ~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~iA~--~iP~~~~v~~lvGs~~~~~l~fi 246 (302)
++..-.+... . ++. +++++..+ ...+..+++. ....+.+++++.|.+.....+.+
T Consensus 266 ys~~l~l~~l-~-~~~-------~~~~~~~i---~~ii~~~l~~~~~~~~f~~FL~~lg~~~~P~~gI~ 322 (386)
T TIGR02358 266 YSAAISTGNL-L-PRL-------KVKHLAIG---VGVLGTLIALLFPVDKYENFLLLIGSVFAPLYAVV 322 (386)
T ss_pred HHHHHHHHHH-H-Hhh-------cchHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5555444443 2 122 11122111 1112222222 24567778887777776555543
No 72
>PF07954 DUF1689: Protein of unknown function (DUF1689) ; InterPro: IPR012470 Family of fungal proteins with unknown function. A member of this family has been found to localise in the mitochondria [].
Probab=34.47 E-value=1.5e+02 Score=23.93 Aligned_cols=61 Identities=16% Similarity=0.123 Sum_probs=37.4
Q ss_pred HHhhhHHhhhHHHHhhHHHHHHHhccccccCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14213 233 SLFGAFCLASLGIIFPAAIHILVLRHEKVSFGPLGWILIKDIALIVFGIFIMVSGTVISIMDIFT 297 (302)
Q Consensus 233 ~lvGs~~~~~l~fi~P~l~~l~~~~~~~~~~~~~~~~~~~~~~ii~~G~~~~v~Gt~~si~~ii~ 297 (302)
.++|+-.+...+|..|-+.+..-.+..+ ....++ -.-.+-+++|+..++.|+..+-....+
T Consensus 33 ~~~~g~~~~~~gF~~Pt~y~~yk~~~~~-gv~~~~---~~pflSf~lG~~~m~~~~~~~~k~~y~ 93 (152)
T PF07954_consen 33 SNLGGYGGFMAGFFAPTAYYRYKTGAIK-GVPVPR---QKPFLSFLLGLGAMMAGSQLAGKYQYN 93 (152)
T ss_pred HHHHHHHHHHHHHhhHHHHHHHhccccc-CCcCCc---cCcchhHHHHHHHHHHHHHHHHHHHHH
Confidence 3456777778888889887654111111 111112 333467788999999998877766553
No 73
>PRK11026 ftsX cell division ABC transporter subunit FtsX; Provisional
Probab=34.06 E-value=2.8e+02 Score=25.11 Aligned_cols=28 Identities=7% Similarity=0.101 Sum_probs=21.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcC
Q psy14213 274 IALIVFGIFIMVSGTVISIMDIFTAIAG 301 (302)
Q Consensus 274 ~~ii~~G~~~~v~Gt~~si~~ii~~~~~ 301 (302)
..+++.|++.+..|++.+++...+..+.
T Consensus 281 ~~l~~~~~~ig~l~s~~s~~r~L~~~~~ 308 (309)
T PRK11026 281 LLLLLVCSMIGWVAAWLATVQHLRRFTP 308 (309)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 3567778888889999998888877654
No 74
>KOG2082|consensus
Probab=33.55 E-value=5.1e+02 Score=26.91 Aligned_cols=166 Identities=13% Similarity=0.149 Sum_probs=71.4
Q ss_pred ecccccCccccccccchhhhHHHHHHHHHHHHHh-hhhe--------ecCCccccchh-cccccCc-hHHH----HHHHH
Q psy14213 102 IEHHMREPKKFRQPIGVFNVGIVLTALLFAITGM-CGYM--------KYGTAAQGSMT-LNIAEDQ-IMAQ----IVKLL 166 (302)
Q Consensus 102 i~~~M~~p~~~~~~~~v~~~s~~~~~~~y~~~g~-~GY~--------~fG~~~~~~il-~n~p~~~-~~~~----~~~~~ 166 (302)
--.++|||++ +-+. -...+......+|..-.+ +|-. .||+++.++.. -++...+ |... ....+
T Consensus 432 rSGDLkDaQk-SIPv-GTI~AilTTS~vYlssv~lFGa~i~~~vLRDKfG~sv~g~lVva~laWPsPwVi~IGsFlST~G 509 (1075)
T KOG2082|consen 432 RSGDLKDAQK-SIPV-GTIAAILTTSFVYLSSVVLFGACIEGVVLRDKFGQSVGGNLVVATLAWPSPWVIVIGSFLSTCG 509 (1075)
T ss_pred CCccccchhh-cCch-hhhHHHHHHHHHHHHHHHHHHHhhcchhhhhhhhhhccCcEEEEEecCCCceeeehhHHHHHhH
Confidence 3467889975 3222 344555556666665432 3322 46666666543 2332222 3222 22333
Q ss_pred HHHHHHHhhhcchhc-HHHHHHHhhhhhccccccc-cchhhhhhhhHHHHHHHHHHHHHhcCchhHHHHHhhhHHhhhHH
Q psy14213 167 YAFVIFFSYPLQNFV-PLELLWMNYIKQHMVEYSE-KKKLIVEYVFREVIVLITWAFALVIPHLDLLISLFGAFCLASLG 244 (302)
Q Consensus 167 ~~l~~~~sypL~~~p-~~~~l~~~~~~~~~~~~~~-~~~~~~~~~~r~~~~~~~~~iA~~iP~~~~v~~lvGs~~~~~l~ 244 (302)
..++.+++-|=.+.. ++|-+... +.. +++.+. ..+.| ..+++ ++.+-+++.+-+++.+-.++.=++ .+|
T Consensus 510 AgLQsLtgAPRLLQAIAkD~IiPf-L~~-F~~~~~ngEPt~-aLlLT----~~Ice~gILigslD~iApilsmFF--LMC 580 (1075)
T KOG2082|consen 510 AGLQSLTGAPRLLQAIAKDDIIPF-LAP-FGHGKANGEPTW-ALLLT----AIICECGILIGSLDLIAPILSMFF--LMC 580 (1075)
T ss_pred HHHhhhcCcHHHHHHHhhcCccch-hhh-hccccCCCCccH-HHHHH----HHHHHhhheeechhHHHHHHHHHH--HHH
Confidence 445555554432221 12222221 111 111001 12223 23333 344455666777777666654444 333
Q ss_pred HHhh---HHHHHHHhccccccCCcchHHHHHHHHHHHHHHHH
Q psy14213 245 IIFP---AAIHILVLRHEKVSFGPLGWILIKDIALIVFGIFI 283 (302)
Q Consensus 245 fi~P---~l~~l~~~~~~~~~~~~~~~~~~~~~~ii~~G~~~ 283 (302)
|.+= |..+-.++-+ .+++..+..+|.+.++|...
T Consensus 581 Y~fVNLaCavqtLLrtP-----nWRPRfkyyHW~LSflG~sL 617 (1075)
T KOG2082|consen 581 YLFVNLACAVQTLLRTP-----NWRPRFKYYHWSLSFLGASL 617 (1075)
T ss_pred HHHHhHHHHHHHHhcCC-----CCCccchhhhhHHHHHHHHH
Confidence 3322 2222222222 22222256777777777543
No 75
>KOG1289|consensus
Probab=33.26 E-value=4.9e+02 Score=25.71 Aligned_cols=34 Identities=15% Similarity=0.182 Sum_probs=22.5
Q ss_pred cCchhHHHHHhh-hHHhhhHHHHhhHHHHHHHhcc
Q psy14213 225 IPHLDLLISLFG-AFCLASLGIIFPAAIHILVLRH 258 (302)
Q Consensus 225 iP~~~~v~~lvG-s~~~~~l~fi~P~l~~l~~~~~ 258 (302)
.++-..+-++++ +.....++|..|..+.+-..|+
T Consensus 410 L~s~~Af~Alfs~a~i~l~~Ay~iP~~~rlf~~r~ 444 (550)
T KOG1289|consen 410 LASATAFNALFSAAAIALFIAYAIPIFCRLFFGRD 444 (550)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHhHHhheeeccc
Confidence 444444444332 5667889999999997776665
No 76
>PRK00701 manganese transport protein MntH; Reviewed
Probab=33.25 E-value=4.4e+02 Score=25.17 Aligned_cols=44 Identities=14% Similarity=0.150 Sum_probs=21.4
Q ss_pred hhhhhhhHHHHHHHHHHHHHhc--CchhHHHHHhhhHHhhhHHHHhhHHH
Q psy14213 204 LIVEYVFREVIVLITWAFALVI--PHLDLLISLFGAFCLASLGIIFPAAI 251 (302)
Q Consensus 204 ~~~~~~~r~~~~~~~~~iA~~i--P~~~~v~~lvGs~~~~~l~fi~P~l~ 251 (302)
+.+|...|.+.++.+..+...- .+...++- .+....++.+|...
T Consensus 346 ~~~~~~~~~~~ii~a~~~~~~~~~~~p~~lli----~aqv~~~i~LP~~~ 391 (439)
T PRK00701 346 WVRRLITRGLAMVPALIVILLGGELDPTRLLV----LSQVVLSFGLPFAL 391 (439)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHH----HHHHHHHHHHHHHH
Confidence 3445556666555555554443 33333433 33344455666543
No 77
>PRK11281 hypothetical protein; Provisional
Probab=32.56 E-value=6.9e+02 Score=27.22 Aligned_cols=26 Identities=12% Similarity=0.089 Sum_probs=18.6
Q ss_pred hhhhHHHHHHHHHHHHHhhhheecCC
Q psy14213 118 VFNVGIVLTALLFAITGMCGYMKYGT 143 (302)
Q Consensus 118 v~~~s~~~~~~~y~~~g~~GY~~fG~ 143 (302)
++.++...+.-..+.+...||+.+..
T Consensus 545 al~~t~l~alp~~l~~~~~g~~~~~~ 570 (1113)
T PRK11281 545 AILITLLLALPVTLIFLAVGLILLTD 570 (1113)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 56666666666677778889977753
No 78
>cd08766 Cyt_b561_ACYB-1_like Plant cytochrome b(561), including the carbon monoxide oxygenase ACYB-1. Cytochrome b(561), as found in plants, similar to the Arabidopsis thaliana ACYB-1 gene product, a cytochrome b561 isoform localized to the tonoplast. This protein might act as a ferric-chelate reductase, catalyzing the reduction of Fe(3+) to Fe(2+), and might be capable of trans-membrane electron transport from intracellular ascorbate to extracellular ferric chelates. It is assumed that this protein uses ascorbate as the electron donor. Belongs to the cytochrome b(561) family, which are secretory vesicle-specific electron transport proteins. Cytochromes b(561) are integral membrane proteins that bind two heme groups non-covalently, and may have six alpha-helical trans-membrane segments.
Probab=31.24 E-value=2.7e+02 Score=22.14 Aligned_cols=63 Identities=14% Similarity=0.218 Sum_probs=41.9
Q ss_pred hhhhHHHHHHHHHHHHHhhhheecCCccccchhcccccCchHHHHHHHHHHHHHHHhhhcchhcH
Q psy14213 118 VFNVGIVLTALLFAITGMCGYMKYGTAAQGSMTLNIAEDQIMAQIVKLLYAFVIFFSYPLQNFVP 182 (302)
Q Consensus 118 v~~~s~~~~~~~y~~~g~~GY~~fG~~~~~~il~n~p~~~~~~~~~~~~~~l~~~~sypL~~~p~ 182 (302)
.+-..+-....+...+|+..-..+-|+. .+.+.+.-.+|...+.-+++.++.+..+.-..+|.
T Consensus 42 ~iH~~l~~la~~~~vvGl~avf~~~~~~--~~~~~~SlHSwlGl~t~~L~~lQ~~~G~~~f~~P~ 104 (144)
T cd08766 42 AVHLTLHLVALVLGIVGIYAAFKFHNEV--GIPNLYSLHSWLGIGTISLFGLQWLFGFVTFWFPG 104 (144)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhccc--CccccccHHHHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence 6667777777777778875444443332 33333333578888888888888888876667775
No 79
>TIGR02119 panF sodium/pantothenate symporter. Pantothenate (vitamin B5) is a precursor of coenzyme A and is made from aspartate and 2-oxoisovalerate in most bacteria with completed genome sequences. However, some pathogens must import pantothenate. This model describes PanF, a sodium/pantothenate symporter, from a larger family of Sodium/substrate symporters (pfam00474). Several species that have this transporter appear to lack all enzymes of pantothenate biosynthesis, namely Haemophilus influenzae, Pasteurella multocida, Fusobacterium nucleatum, and Borrelia burgdorferi.
Probab=30.32 E-value=4.9e+02 Score=24.82 Aligned_cols=30 Identities=10% Similarity=0.377 Sum_probs=14.2
Q ss_pred ccCccccccccchhhhHHHHHHHHHHHHHhhhh
Q psy14213 106 MREPKKFRQPIGVFNVGIVLTALLFAITGMCGY 138 (302)
Q Consensus 106 M~~p~~~~~~~~v~~~s~~~~~~~y~~~g~~GY 138 (302)
.||++.-+| ....+......++......|.
T Consensus 262 ak~~~~a~~---~~~~~~~~~~~~~~~~~~~G~ 291 (471)
T TIGR02119 262 YKDSKAMHR---AMIIGTIVVGIIMLGMHLAGV 291 (471)
T ss_pred cCCHHHHhh---hHhHHHHHHHHHHHHHHHHHH
Confidence 345554444 554554444444444444443
No 80
>PRK13183 psbN photosystem II reaction center protein N; Provisional
Probab=29.36 E-value=76 Score=19.93 Aligned_cols=27 Identities=30% Similarity=0.621 Sum_probs=19.0
Q ss_pred hhhhHHHHHHHHHHHHHhhhheecCCc
Q psy14213 118 VFNVGIVLTALLFAITGMCGYMKYGTA 144 (302)
Q Consensus 118 v~~~s~~~~~~~y~~~g~~GY~~fG~~ 144 (302)
....+..+..++..+.|..-|-+||..
T Consensus 7 A~~~~i~i~~lL~~~TgyaiYtaFGpp 33 (46)
T PRK13183 7 ALSLAITILAILLALTGFGIYTAFGPP 33 (46)
T ss_pred hHHHHHHHHHHHHHHhhheeeeccCCc
Confidence 445566666777777777778889964
No 81
>PRK04949 putative sulfate transport protein CysZ; Validated
Probab=28.46 E-value=4e+02 Score=23.29 Aligned_cols=62 Identities=10% Similarity=0.126 Sum_probs=34.4
Q ss_pred ccccCccccccccchhhhHHHHHHHHHHHHHhhhheecCCccccchhccccc-CchHHHHHHHHHHHH
Q psy14213 104 HHMREPKKFRQPIGVFNVGIVLTALLFAITGMCGYMKYGTAAQGSMTLNIAE-DQIMAQIVKLLYAFV 170 (302)
Q Consensus 104 ~~M~~p~~~~~~~~v~~~s~~~~~~~y~~~g~~GY~~fG~~~~~~il~n~p~-~~~~~~~~~~~~~l~ 170 (302)
+.+++|+ +++ .......+..+++...-..++-.++|.. +.++...|+ .+|+..+......+.
T Consensus 19 ~~l~~P~-lr~---~~liPl~inllLf~~~l~~~~~~~~~~l-~~l~~~~p~wl~wl~~ll~~l~~l~ 81 (251)
T PRK04949 19 KLILQPG-LRR---FVILPLLVNILLFGGAFWWLFTQLDAWI-DWLMSQLPDWLSWLSYLLWPLAVLS 81 (251)
T ss_pred HHhcCcc-hHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHhcCccHHHHHHHHHHHHHHHH
Confidence 3456676 466 7778888888877766444443444322 455556663 244444444444433
No 82
>PF02468 PsbN: Photosystem II reaction centre N protein (psbN); InterPro: IPR003398 Oxygenic photosynthesis uses two multi-subunit photosystems (I and II) located in the cell membranes of cyanobacteria and in the thylakoid membranes of chloroplasts in plants and algae. Photosystem II (PSII) has a P680 reaction centre containing chlorophyll 'a' that uses light energy to carry out the oxidation (splitting) of water molecules, and to produce ATP via a proton pump. Photosystem I (PSI) has a P700 reaction centre containing chlorophyll that takes the electron and associated hydrogen donated from PSII to reduce NADP+ to NADPH. Both ATP and NADPH are subsequently used in the light-independent reactions to convert carbon dioxide to glucose using the hydrogen atom extracted from water by PSII, releasing oxygen as a by-product. PSII is a multisubunit protein-pigment complex containing polypeptides both intrinsic and extrinsic to the photosynthetic membrane [, ]. Within the core of the complex, the chlorophyll and beta-carotene pigments are mainly bound to the antenna proteins CP43 (PsbC) and CP47 (PsbB), which pass the excitation energy on to the reaction centre proteins D1 (Qb, PsbA) and D2 (Qa, PsbD) that bind all the redox-active cofactors involved in the energy conversion process. The PSII oxygen-evolving complex (OEC) oxidises water to provide protons for use by PSI, and consists of OEE1 (PsbO), OEE2 (PsbP) and OEE3 (PsbQ). The remaining subunits in PSII are of low molecular weight (less than 10 kDa), and are involved in PSII assembly, stabilisation, dimerisation, and photo-protection []. This family represents the low molecular weight transmembrane protein PsbN found in PSII. PsbN may have a role in PSII stability, however its actual function unknown. PsbN does not appear to be essential for photoautotrophic growth or normal PSII function.; GO: 0015979 photosynthesis, 0009523 photosystem II, 0009539 photosystem II reaction center, 0016020 membrane
Probab=28.39 E-value=78 Score=19.62 Aligned_cols=27 Identities=30% Similarity=0.555 Sum_probs=19.2
Q ss_pred hhhHHHHHHHHHHHHHhhhheecCCcc
Q psy14213 119 FNVGIVLTALLFAITGMCGYMKYGTAA 145 (302)
Q Consensus 119 ~~~s~~~~~~~y~~~g~~GY~~fG~~~ 145 (302)
...+..+..++-.+.|..-|-+||...
T Consensus 5 ~~~~i~i~~~lv~~Tgy~iYtaFGppS 31 (43)
T PF02468_consen 5 TVLAIFISCLLVSITGYAIYTAFGPPS 31 (43)
T ss_pred eeHHHHHHHHHHHHHhhhhhheeCCCc
Confidence 345666667777778888899999543
No 83
>CHL00020 psbN photosystem II protein N
Probab=26.69 E-value=73 Score=19.71 Aligned_cols=27 Identities=30% Similarity=0.515 Sum_probs=18.7
Q ss_pred hhhhHHHHHHHHHHHHHhhhheecCCc
Q psy14213 118 VFNVGIVLTALLFAITGMCGYMKYGTA 144 (302)
Q Consensus 118 v~~~s~~~~~~~y~~~g~~GY~~fG~~ 144 (302)
+...+..+..++....|..-|-+||..
T Consensus 4 A~~~~i~i~~ll~~~Tgy~iYtaFGpp 30 (43)
T CHL00020 4 ATLVAIFISGLLVSFTGYALYTAFGQP 30 (43)
T ss_pred hhhHHHHHHHHHHHhhheeeeeccCCc
Confidence 344566666677777777778889864
No 84
>COG4682 Predicted membrane protein [Function unknown]
Probab=25.71 E-value=3.2e+02 Score=21.13 Aligned_cols=60 Identities=10% Similarity=0.000 Sum_probs=36.5
Q ss_pred hhhHHhhhHHHHhhHHHHHHHhccccccCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14213 235 FGAFCLASLGIIFPAAIHILVLRHEKVSFGPLGWILIKDIALIVFGIFIMVSGTVISIMD 294 (302)
Q Consensus 235 vGs~~~~~l~fi~P~l~~l~~~~~~~~~~~~~~~~~~~~~~ii~~G~~~~v~Gt~~si~~ 294 (302)
=|=.....+.-.+|+..+.|.-+++-++........-.++...+.++.....|.+.+-..
T Consensus 41 KGYyfaVlvl~~F~a~s~Qk~vrdk~e~~~i~~~~~~~C~~~~lisigll~vGv~Na~la 100 (128)
T COG4682 41 KGYYFAVLVLGLFGAYSYQKTVRDKLEDIPITSIYYHRCQLVALISIGLLFVGVWNATLA 100 (128)
T ss_pred CceeehhHHHHhhHHHHHHHHHHHhccCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 356666777778899999997665442222222233445566666666667777766443
No 85
>PRK11375 allantoin permease; Provisional
Probab=25.62 E-value=6.2e+02 Score=24.46 Aligned_cols=20 Identities=15% Similarity=0.531 Sum_probs=14.8
Q ss_pred hhHHHHHhhhHHhhhHHHHh
Q psy14213 228 LDLLISLFGAFCLASLGIIF 247 (302)
Q Consensus 228 ~~~v~~lvGs~~~~~l~fi~ 247 (302)
|.+++++.|++.+...+.++
T Consensus 373 f~~FL~~lg~~l~Pi~gImi 392 (484)
T PRK11375 373 IYLFLDIIGGMLGPVIGVMM 392 (484)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 78888888888866665543
No 86
>PF08802 CytB6-F_Fe-S: Cytochrome B6-F complex Fe-S subunit ; InterPro: IPR014909 The cytochrome b6-f complex mediates electron transfer between photosystem II (PSII) and photosystem I (PSI), cyclic electron flow around PSI, and state transitions. The cytochrome b6-f complex has 4 large subunits, these are: cytochrome b6, subunit IV (17 kDa polypeptide, PetD), cytochrome f and the Rieske protein, while the 4 small subunits are: PetG, PetL, PetM and PetN. The complex functions as a dimer. This protein corresponds to the alpha helical transmembrane domain of the cytochrome b6-f complex Rieske iron-sulphur subunit. ; GO: 0009496 plastoquinol-plastocyanin reductase activity, 0051537 2 iron, 2 sulfur cluster binding, 0055114 oxidation-reduction process, 0042651 thylakoid membrane; PDB: 1Q90_R 1VF5_D 2E75_D 2E74_D 2E76_D 2D2C_Q 2ZT9_D.
Probab=24.37 E-value=1.6e+02 Score=17.89 Aligned_cols=27 Identities=26% Similarity=0.589 Sum_probs=16.6
Q ss_pred cCChh--HHHHH--HHHHHHHHhHHHHHHHH
Q psy14213 15 IPHLD--LLISL--FGAFCLASLGIIFPATI 41 (302)
Q Consensus 15 iP~l~--~~isl--~Ga~~~~~L~li~P~~i 41 (302)
+|+++ .++++ .||++....+...|..-
T Consensus 3 VPdm~RR~lmN~ll~Gava~~a~~~lyP~~~ 33 (39)
T PF08802_consen 3 VPDMSRRQLMNLLLGGAVAVPAGGMLYPYVK 33 (39)
T ss_dssp ---HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCChhHHHHHHHHHHhhHHHHHHHHhhhhee
Confidence 56666 44444 48888888888888643
No 87
>TIGR00439 ftsX putative protein insertion permease FtsX. FtsX is an integral membrane protein encoded in the same operon as signal recognition particle docking protein FtsY and FtsE. It belongs to a family of predicted permeases and may play a role in the insertion of proteins required for potassium transport, cell division, and other activities. FtsE is a hydrophilic nucleotide-binding protein that associates with the inner membrane by means of association with FtsX.
Probab=24.10 E-value=5.4e+02 Score=23.23 Aligned_cols=28 Identities=18% Similarity=0.175 Sum_probs=22.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcC
Q psy14213 274 IALIVFGIFIMVSGTVISIMDIFTAIAG 301 (302)
Q Consensus 274 ~~ii~~G~~~~v~Gt~~si~~ii~~~~~ 301 (302)
..++..|++.+..|.+.+++...+..+.
T Consensus 281 ~~l~~~g~~lg~lgs~~s~~r~Lr~~~~ 308 (309)
T TIGR00439 281 GLLLGFCIALGVVGAWLATTQHLLCFKA 308 (309)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 4667778899999999999988887654
No 88
>PRK12768 CysZ-like protein; Reviewed
Probab=20.68 E-value=5.7e+02 Score=22.25 Aligned_cols=27 Identities=30% Similarity=0.354 Sum_probs=19.4
Q ss_pred ccccCccccccccchhhhHHHHHHHHHHHHH
Q psy14213 104 HHMREPKKFRQPIGVFNVGIVLTALLFAITG 134 (302)
Q Consensus 104 ~~M~~p~~~~~~~~v~~~s~~~~~~~y~~~g 134 (302)
+++.||. +++ ++..+...+..++...+
T Consensus 10 ~ql~~~~-~r~---vl~~~~~lt~~l~~~~~ 36 (240)
T PRK12768 10 ARLLSPP-MRS---VFWKVLGLTLLLLVVLW 36 (240)
T ss_pred HHhCCHH-HHH---HHHHHHHHHHHHHHHHH
Confidence 4566776 566 88888888877776653
No 89
>PRK11383 hypothetical protein; Provisional
Probab=20.00 E-value=4.6e+02 Score=20.89 Aligned_cols=60 Identities=10% Similarity=0.123 Sum_probs=41.5
Q ss_pred HHHhhhHHhhhHHHHhhHHHHHHHhccccccCCcchHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14213 232 ISLFGAFCLASLGIIFPAAIHILVLRHEKVSFGPLGWILIKDIALIVFGIFIMVSGTVIS 291 (302)
Q Consensus 232 ~~lvGs~~~~~l~fi~P~l~~l~~~~~~~~~~~~~~~~~~~~~~ii~~G~~~~v~Gt~~s 291 (302)
++==|=....++.=.|+++-+.|.-|++.++......-...+|...+.++....+|.+++
T Consensus 38 LsEKGyY~~vl~lglF~avs~QK~vRD~~egi~vt~~f~~~cw~a~l~~i~LL~iGLwNA 97 (145)
T PRK11383 38 LNEKGYYFAVLVLGLFSAASYQKTVRDKYEGIPTTSIYYMTCLTVFIISVALLMVGLWNA 97 (145)
T ss_pred cCcccHHHHHHHHHHHHHHHHHHHHhhcccCCChhHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 333456666677777888888887666542222223456788999999999999998865
Done!