Query psy14213
Match_columns 302
No_of_seqs 237 out of 1730
Neff 8.8
Searched_HMMs 29240
Date Fri Aug 16 22:20:02 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy14213.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/14213hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4djk_A Probable glutamate/gamm 97.3 0.0034 1.2E-07 59.1 13.9 44 97-143 218-262 (511)
2 3gia_A Uncharacterized protein 96.6 0.019 6.4E-07 52.9 12.1 152 97-259 205-369 (444)
3 3l1l_A Arginine/agmatine antip 96.5 0.013 4.3E-07 54.1 10.2 153 97-259 208-379 (445)
4 3dh4_A Sodium/glucose cotransp 72.0 43 0.0015 31.3 12.1 47 212-259 375-421 (530)
5 1afo_A Glycophorin A; integral 61.5 21 0.00072 20.6 4.7 28 274-301 12-39 (40)
6 2xq2_A Sodium/glucose cotransp 52.5 1.5E+02 0.0051 28.0 12.0 47 212-259 404-450 (593)
7 2jln_A MHP1; hydantoin, transp 24.8 2.1E+02 0.007 26.4 7.8 20 227-246 358-377 (501)
8 4b4a_A TATC, SEC-independent p 24.7 3E+02 0.01 22.8 13.6 94 156-256 58-175 (249)
9 3tx3_A Uncharacterized protein 15.2 4.9E+02 0.017 21.5 10.5 28 106-137 24-51 (249)
10 2zjs_E Preprotein translocase 8.0 3.9E+02 0.013 16.5 3.4 11 98-108 8-18 (60)
No 1
>4djk_A Probable glutamate/gamma-aminobutyrate antiporter; LEUT, glutamate-GABA antiporter, transport protein; 3.10A {Escherichia coli} PDB: 4dji_A
Probab=97.31 E-value=0.0034 Score=59.14 Aligned_cols=44 Identities=14% Similarity=0.137 Sum_probs=34.7
Q ss_pred eEEEeecccccCccc-cccccchhhhHHHHHHHHHHHHHhhhheecCC
Q psy14213 97 TQIVKIEHHMREPKK-FRQPIGVFNVGIVLTALLFAITGMCGYMKYGT 143 (302)
Q Consensus 97 ~~~~~i~~~M~~p~~-~~~~~~v~~~s~~~~~~~y~~~g~~GY~~fG~ 143 (302)
......-+|+|||+| .+| .+..++.++.++|....+.-....++
T Consensus 218 e~~~~~a~E~k~P~k~ip~---ai~~~~~~~~~~y~~~~~~~~~~~~~ 262 (511)
T 4djk_A 218 EASATHVNEMSNPGRDYPL---AMLLLMVAAICLSSVGGLSIAMVIPG 262 (511)
T ss_dssp GGGTGGGSSSSCCTTTHHH---HHHHHHHHHHHHHHHHHHHHHTTSCT
T ss_pred HHHHHHHHhccCcccchhH---HHHHHHHHHHHHHHHHHHHHHeecCH
Confidence 566688999999964 566 89999999999999887766555554
No 2
>3gia_A Uncharacterized protein MJ0609; membrane protein, transporter, cell membrane, membrane, transmembrane, transport protein; HET: D10 BCN; 2.32A {Methanocaldococcus jannaschii} PDB: 3gi9_C* 3gi8_C
Probab=96.61 E-value=0.019 Score=52.94 Aligned_cols=152 Identities=9% Similarity=0.047 Sum_probs=75.6
Q ss_pred eEEEeecccccCccc-cccccchhhhHHHHHHHHHHHHHhhhheecCCcc-c---cchhcc-ccc--CchHHHHHHHHHH
Q psy14213 97 TQIVKIEHHMREPKK-FRQPIGVFNVGIVLTALLFAITGMCGYMKYGTAA-Q---GSMTLN-IAE--DQIMAQIVKLLYA 168 (302)
Q Consensus 97 ~~~~~i~~~M~~p~~-~~~~~~v~~~s~~~~~~~y~~~g~~GY~~fG~~~-~---~~il~n-~p~--~~~~~~~~~~~~~ 168 (302)
.......+|+|||+| .+| .+..+..++.++|....+......+.+. . ++.... ..+ .++...+..+...
T Consensus 205 e~~~~~~~e~k~P~r~ip~---ai~~~~~~~~~~y~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~g~~~~~~i~~~~~ 281 (444)
T 3gia_A 205 GVITNASEHIENPKKNVPR---AIFISILIVMFVYVGVAISAIGNLPIDELIKASENALAVAAKPFLGNLGFLLISIGAL 281 (444)
T ss_dssp HHHHTTGGGBSSHHHHHHH---HHHHHHHHHHHHHHHHHHHHHTTSCHHHHHHTGGGHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHccCcccchhH---HHHHHHHHHHHHHHHHHHHHHhCCCHHHHhcccchhHHHHHHHHhhHHHHHHHHHHHH
Confidence 566688899999964 677 8999999999999988765444443221 0 000000 000 0122223333333
Q ss_pred HHHHHhhhcchhcHHHHHHHhhhhhc-----cccccccchhhhhhhhHHHHHHHHHHHHHhcCchhHHHHHhhhHHhhhH
Q psy14213 169 FVIFFSYPLQNFVPLELLWMNYIKQH-----MVEYSEKKKLIVEYVFREVIVLITWAFALVIPHLDLLISLFGAFCLASL 243 (302)
Q Consensus 169 l~~~~sypL~~~p~~~~l~~~~~~~~-----~~~~~~~~~~~~~~~~r~~~~~~~~~iA~~iP~~~~v~~lvGs~~~~~l 243 (302)
+..+.+.--.+....+.++.. -+++ +.+. +++.......+. .....+...+.+++.+.++. ..+..+
T Consensus 282 ~~~~~~~~~~~~~~sR~l~a~-a~dg~lP~~f~~~-~~~~P~~a~~~~----~~~~~~~~~~~~~~~l~~~~--~~~~~~ 353 (444)
T 3gia_A 282 FSISSAMNATIYGGANVAYSL-AKDGELPEFFERK-VWFKSTEGLYIT----SALGVLFALLFNMEGVASIT--SAVFMV 353 (444)
T ss_dssp HHHHHHHHHHHTTTHHHHHHH-HHHSSCCSSCCTT-SCCSCTHHHHHH----HHHHHHHHHHSCHHHHHHHH--HHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH-HHCCCCCHHHhCC-CCCCCcHHHHHH----HHHHHHHHHHcCHHHHHHHH--HHHHHH
Confidence 333333222333334444332 2221 1110 111111111111 11112222245788887773 345678
Q ss_pred HHHhhHHHHHHHhccc
Q psy14213 244 GIIFPAAIHILVLRHE 259 (302)
Q Consensus 244 ~fi~P~l~~l~~~~~~ 259 (302)
.|.++++.+++.++++
T Consensus 354 ~~~~~~~~~~~~r~~~ 369 (444)
T 3gia_A 354 IYLFVILSHYILIDEV 369 (444)
T ss_dssp HHHHHHHHHHHTHHHH
T ss_pred HHHHHHHHHHHhhhcC
Confidence 8999999888877664
No 3
>3l1l_A Arginine/agmatine antiporter; TCDB 2.A.3.2.5, ADIC, Arg-bound, amino-acid transport, cell inner membrane, cell membrane, membrane; HET: ARG BNG; 3.00A {Escherichia coli} PDB: 3h5m_A* 3h6b_A 3lrb_A 3lrc_A 3ob6_A* 3hqk_A 3ncy_A
Probab=96.52 E-value=0.013 Score=54.12 Aligned_cols=153 Identities=13% Similarity=0.053 Sum_probs=77.5
Q ss_pred eEEEeecccccCcc-ccccccchhhhHHHHHHHHHHHHHhhhheecCCccc----cchh---cccccCchHHHHHHHHHH
Q psy14213 97 TQIVKIEHHMREPK-KFRQPIGVFNVGIVLTALLFAITGMCGYMKYGTAAQ----GSMT---LNIAEDQIMAQIVKLLYA 168 (302)
Q Consensus 97 ~~~~~i~~~M~~p~-~~~~~~~v~~~s~~~~~~~y~~~g~~GY~~fG~~~~----~~il---~n~p~~~~~~~~~~~~~~ 168 (302)
.......+|+|||+ +.+| .+..+..++.++|...........+.+.. ++.. .+.- .++...+..+...
T Consensus 208 e~~~~~~~e~k~p~r~ip~---a~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~-g~~~~~~~~~~~~ 283 (445)
T 3l1l_A 208 ESASVAAGVVKNPKRNVPI---ATIGGVLIAAVCYVLSTTAIMGMIPNAALRVSASPFGDAARMAL-GDTAGAIVSFCAA 283 (445)
T ss_dssp THHHHGGGGBSSHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHSCTTTSCSTTCTHHHHHHHHH-CTTHHHHHHHHHH
T ss_pred HHHHHHHHHhcCccccccH---HHHHHHHHHHHHHHHHHHHHHhcCCHHHHhccCcHHHHHHHHHh-hHHHHHHHHHHHH
Confidence 66678899999995 5667 88999999999999887765555543221 1111 1111 1233344444444
Q ss_pred HHHHHhhhcchhcHHHHHHHhhhhh-----ccccccccchhhhhhhhHHHHHHHHHHHHHh--cC----chhHHHHHhhh
Q psy14213 169 FVIFFSYPLQNFVPLELLWMNYIKQ-----HMVEYSEKKKLIVEYVFREVIVLITWAFALV--IP----HLDLLISLFGA 237 (302)
Q Consensus 169 l~~~~sypL~~~p~~~~l~~~~~~~-----~~~~~~~~~~~~~~~~~r~~~~~~~~~iA~~--iP----~~~~v~~lvGs 237 (302)
+..+.+.--..+...+.++.. -++ ...+. ++++...+.++-... .+.+++.. .| .++.+.++.+
T Consensus 284 ~~~~~~~~~~~~~~sR~~~~~-a~dg~lP~~~~~~-~~~~~P~~a~~~~~~--~~~~~~~~~~~~~~~~~~~~l~~~~~- 358 (445)
T 3l1l_A 284 AGCLGSLGGWTLLAGQTAKAA-ADDGLFPPIFARV-NKAGTPVAGLIIVGI--LMTIFQLSSISPNATKEFGLVSSVSV- 358 (445)
T ss_dssp HHHTTTHHHHHHHHHHHHHHH-HHTTSSCGGGGCC-CTTCCCHHHHHHHHH--HHHHHHHSTTSHHHHCCCHHHHHHHH-
T ss_pred HHHHHHHHHHHHHHHHHHHHH-HhCCCCcHHHHhc-CCCCCCHHHHHHHHH--HHHHHHHHHHcccHHHHHHHHHHHHH-
Confidence 444444333334444444432 221 11110 111111111111111 11112221 23 3555555533
Q ss_pred HHhhhHHHHhhHHHHHHHhccc
Q psy14213 238 FCLASLGIIFPAAIHILVLRHE 259 (302)
Q Consensus 238 ~~~~~l~fi~P~l~~l~~~~~~ 259 (302)
.+..+.|.++++.+++.++++
T Consensus 359 -~~~~~~y~~~~~~~~~~r~~~ 379 (445)
T 3l1l_A 359 -IFTLVPYLYTCAALLLLGHGH 379 (445)
T ss_dssp -HHHHHHHHHHHHHHHHHHSSS
T ss_pred -HHHHHHHHHHHHHHHHHhhcC
Confidence 456788999999999987654
No 4
>3dh4_A Sodium/glucose cotransporter; membrane protein, symporter, sugar transport, SGLT, ION TRAN membrane, sodium transport, symport; HET: GAL; 2.70A {Vibrio parahaemolyticus}
Probab=72.00 E-value=43 Score=31.31 Aligned_cols=47 Identities=9% Similarity=0.044 Sum_probs=22.3
Q ss_pred HHHHHHHHHHHHhcCchhHHHHHhhhHHhhhHHHHhhHHHHHHHhccc
Q psy14213 212 EVIVLITWAFALVIPHLDLLISLFGAFCLASLGIIFPAAIHILVLRHE 259 (302)
Q Consensus 212 ~~~~~~~~~iA~~iP~~~~v~~lvGs~~~~~l~fi~P~l~~l~~~~~~ 259 (302)
.++.+++..+|...++++..++++-++.+....-++|++ -+.++|++
T Consensus 375 v~~~i~a~~~a~~~~~~~~~~~~~~~~~g~~~~~~~~~~-llgl~wkr 421 (530)
T 3dh4_A 375 VVALIIACLIAPMLGGIGQAFQYIQEYTGLVSPGILAVF-LLGLFWKK 421 (530)
T ss_dssp HHHHHHHHHHGGGGGGCSCHHHHHHHHHTTTHHHHHHHH-HHHHHCTT
T ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhHHHHHHH-HHHHHhCC
Confidence 344444455554455666666655444433222233433 23566654
No 5
>1afo_A Glycophorin A; integral membrane protein, transmembrane helix interactions, membrane protein folding; NMR {Homo sapiens} SCOP: j.35.1.1 PDB: 2kpf_A
Probab=61.51 E-value=21 Score=20.64 Aligned_cols=28 Identities=32% Similarity=0.484 Sum_probs=21.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcC
Q psy14213 274 IALIVFGIFIMVSGTVISIMDIFTAIAG 301 (302)
Q Consensus 274 ~~ii~~G~~~~v~Gt~~si~~ii~~~~~ 301 (302)
..++++|+++++.|+.-.+.--+++...
T Consensus 12 i~lII~~vmaGiIG~IllI~y~I~rl~K 39 (40)
T 1afo_A 12 ITLIIFGVMAGVIGTILLISYGIRRLIK 39 (40)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHSC
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 4678889999999998887776666543
No 6
>2xq2_A Sodium/glucose cotransporter; transport protein, inverted repeats, LEUT-fold, galactose; 2.73A {Vibrio parahaemolyticus} PDB: 2xq2_B 2kpe_A
Probab=52.54 E-value=1.5e+02 Score=28.02 Aligned_cols=47 Identities=9% Similarity=0.057 Sum_probs=23.8
Q ss_pred HHHHHHHHHHHHhcCchhHHHHHhhhHHhhhHHHHhhHHHHHHHhccc
Q psy14213 212 EVIVLITWAFALVIPHLDLLISLFGAFCLASLGIIFPAAIHILVLRHE 259 (302)
Q Consensus 212 ~~~~~~~~~iA~~iP~~~~v~~lvGs~~~~~l~fi~P~l~~l~~~~~~ 259 (302)
.++.+++..+|....+.+.+++++....+....=++|+++ +.++|++
T Consensus 404 v~~~~ia~~~a~~~~~~~~i~~~~~~~~g~~~~~~~~~~l-lglfwkr 450 (593)
T 2xq2_A 404 VVALIIAALIAPMLGGIGQCFQYIQEYTGLVSPGILAVFL-LGLFWKK 450 (593)
T ss_dssp HHHHHHHHHHGGGGGGCBCHHHHHHHHHTTTHHHHHHHHH-HHHHCTT
T ss_pred HHHHHHHHHHHHHHhchhHHHHHHHHHHHHHhhHHHHHHH-HHHHhCC
Confidence 3344444455554456667776665544433333344443 3455654
No 7
>2jln_A MHP1; hydantoin, transporter, membrane protein, nucleobase-cation-symport-1 family; 2.85A {Microbacterium liquefaciens} PDB: 2jlo_A* 2x79_A
Probab=24.78 E-value=2.1e+02 Score=26.37 Aligned_cols=20 Identities=20% Similarity=0.303 Sum_probs=12.2
Q ss_pred chhHHHHHhhhHHhhhHHHH
Q psy14213 227 HLDLLISLFGAFCLASLGII 246 (302)
Q Consensus 227 ~~~~v~~lvGs~~~~~l~fi 246 (302)
.+.++++++|.+.....+.+
T Consensus 358 ~f~~FL~~lg~~l~P~~gI~ 377 (501)
T 2jln_A 358 VLNTFLNLLASALGPLAGIM 377 (501)
T ss_dssp HHHHHHHHHHHTTHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 46667777777665555433
No 8
>4b4a_A TATC, SEC-independent protein translocase protein TATC; transport protein, TAT secretion system, protein translocati; HET: LMN; 3.50A {Aquifex aeolicus}
Probab=24.73 E-value=3e+02 Score=22.82 Aligned_cols=94 Identities=15% Similarity=0.268 Sum_probs=56.9
Q ss_pred CchHHHHHHHHHHHHHHHhhhcchhcHHHHHHHhhhhhccccccccchhhhh-hhhHHHHHHHHHHHHHh----------
Q psy14213 156 DQIMAQIVKLLYAFVIFFSYPLQNFVPLELLWMNYIKQHMVEYSEKKKLIVE-YVFREVIVLITWAFALV---------- 224 (302)
Q Consensus 156 ~~~~~~~~~~~~~l~~~~sypL~~~p~~~~l~~~~~~~~~~~~~~~~~~~~~-~~~r~~~~~~~~~iA~~---------- 224 (302)
.+....-.++.....++.+.|...+-.-..+... +.++ +++.... ......+...-...|..
T Consensus 58 ~e~f~~~lkvs~~~g~~~a~P~ilyQiw~Fi~Pg-Ly~~------Err~~~~~~~~s~~LF~~G~~f~Yf~v~P~~~~Fl 130 (249)
T 4b4a_A 58 TEPLFILIKISLAVGFIIASPVILYQFWRFIEPA-LYSH------EKRAFIPLLLGSILLFMLGALFAYFIVLPLALKFL 130 (249)
T ss_dssp SCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTT-TSCC------CTTTTHHHHHHHHHHHHHHHHHHHHTHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc-ccHh------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5788889999999999999999886654444433 2211 1222222 22333333333334432
Q ss_pred ----------cC--chhHHHHHhhhHHhh-hHHHHhhHHHHHHHh
Q psy14213 225 ----------IP--HLDLLISLFGAFCLA-SLGIIFPAAIHILVL 256 (302)
Q Consensus 225 ----------iP--~~~~v~~lvGs~~~~-~l~fi~P~l~~l~~~ 256 (302)
.| ++++-++++-.+... -++|-+|.++.+..+
T Consensus 131 ~~~~~~~i~~~~~~~i~~Yl~fv~~l~l~fGl~FelPvi~~~L~~ 175 (249)
T 4b4a_A 131 LGLGFTQLLATPYLSVDMYISFVLKLVVAFGIAFEMPIVLYVLQK 175 (249)
T ss_dssp TCSSSTTSSSSTTEEHHHHHHHHHHHHHHHHHHTSHHHHHHHHHH
T ss_pred HhcchhhhHhhHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 15 677777776665533 478889999887655
No 9
>3tx3_A Uncharacterized protein involved in cysteine BIOS; structural genomics, PSI-biology, NEW YORK consortium on MEM protein structure, nycomps; HET: LDA; 2.30A {Idiomarina loihiensis}
Probab=15.23 E-value=4.9e+02 Score=21.45 Aligned_cols=28 Identities=21% Similarity=0.276 Sum_probs=17.7
Q ss_pred ccCccccccccchhhhHHHHHHHHHHHHHhhh
Q psy14213 106 MREPKKFRQPIGVFNVGIVLTALLFAITGMCG 137 (302)
Q Consensus 106 M~~p~~~~~~~~v~~~s~~~~~~~y~~~g~~G 137 (302)
+.+|+ +++ .......+..++|.......
T Consensus 24 i~~p~-lr~---~vl~Pllinl~L~~~~~~~~ 51 (249)
T 3tx3_A 24 IRTKG-LRR---YVVVPILTNLILFSLAFTWL 51 (249)
T ss_dssp HTSTT-THH---HHHHHHHHHHHHHHHHHHHH
T ss_pred HcCch-HHH---HHHHHHHHHHHHHHHHHHHH
Confidence 45664 455 77788888777766554333
No 10
>2zjs_E Preprotein translocase SECE subunit; translocon, SEC, protein-conducting-channel, membrane, prote transport, translocation, transmembrane, transport; 3.20A {Thermus thermophilus} PDB: 2zqp_E
Probab=8.05 E-value=3.9e+02 Score=16.54 Aligned_cols=11 Identities=0% Similarity=0.027 Sum_probs=6.0
Q ss_pred EEEeecccccC
Q psy14213 98 QIVKIEHHMRE 108 (302)
Q Consensus 98 ~~~~i~~~M~~ 108 (302)
-+-++.+||||
T Consensus 8 f~~~v~~ElkK 18 (60)
T 2zjs_E 8 YFQEARAELAR 18 (60)
T ss_dssp ----CCCCCCC
T ss_pred HHHHHHHHHhh
Confidence 34478899996
Done!