Query psy14213
Match_columns 302
No_of_seqs 237 out of 1730
Neff 8.8
Searched_HMMs 13730
Date Fri Aug 16 22:20:09 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy14213.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/14213hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1q90r_ f.23.12.1 (R:) ISP sub 32.7 33 0.0024 18.5 3.7 27 15-41 4-34 (39)
2 d1rh5b_ f.23.28.1 (B:) Preprot 6.3 1.1E+02 0.008 17.7 1.5 14 128-141 32-45 (56)
3 d1kqfb2 f.23.22.1 (B:246-290) 4.2 2.9E+02 0.021 15.0 2.3 21 125-145 18-38 (45)
4 d1ciya3 f.1.3.1 (A:33-255) del 4.0 2.8E+02 0.02 20.4 3.0 28 211-238 5-32 (223)
5 d1dlca3 f.1.3.1 (A:61-289) del 3.7 2.9E+02 0.021 20.4 2.9 36 210-249 6-42 (229)
6 d2e74d2 f.23.12.1 (D:12-45) IS 3.3 3.4E+02 0.025 13.4 2.4 21 20-40 6-28 (34)
7 d2pila_ d.24.1.1 (A:) Pilin Gc 2.8 4E+02 0.029 17.0 2.6 11 220-230 16-26 (158)
8 d2axtm1 f.23.35.1 (M:1-36) Pho 2.6 4.4E+02 0.032 13.3 2.8 17 240-256 10-26 (36)
9 d2dgxa1 d.58.7.1 (A:563-635) L 2.4 3.5E+02 0.025 16.3 1.5 20 4-23 31-50 (73)
10 d2vv5a3 f.34.1.1 (A:27-112) Me 2.3 6.6E+02 0.048 14.6 7.1 36 204-239 41-78 (86)
No 1
>d1q90r_ f.23.12.1 (R:) ISP subunit from the cytochrome b6f complex, transmembrane anchor {Chlamydomonas reinhardtii [TaxId: 3055]}
Probab=32.65 E-value=33 Score=18.46 Aligned_cols=27 Identities=15% Similarity=0.276 Sum_probs=19.8
Q ss_pred cCChh--HHHH--HHHHHHHHHhHHHHHHHH
Q psy14213 15 IPHLD--LLIS--LFGAFCLASLGIIFPATI 41 (302)
Q Consensus 15 iP~l~--~~is--l~Ga~~~~~L~li~P~~i 41 (302)
+|+.+ .+++ ++|+.+...+++..|-.-
T Consensus 4 VpDMgrR~~MNLll~G~~~~~~~g~l~py~~ 34 (39)
T d1q90r_ 4 VPDMNKRNIMNLILAGGAGLPITTLALGYGA 34 (39)
T ss_dssp CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccchhHHHHHHHHHHhccchhhhhhccceeE
Confidence 57766 4444 469999999999888643
No 2
>d1rh5b_ f.23.28.1 (B:) Preprotein translocase SecE subunit {Archaeon Methanococcus jannaschii [TaxId: 2190]}
Probab=6.31 E-value=1.1e+02 Score=17.70 Aligned_cols=14 Identities=29% Similarity=0.567 Sum_probs=8.5
Q ss_pred HHHHHHHhhhheec
Q psy14213 128 LLFAITGMCGYMKY 141 (302)
Q Consensus 128 ~~y~~~g~~GY~~f 141 (302)
+=..++|+.||..+
T Consensus 32 iG~~i~G~IGf~I~ 45 (56)
T d1rh5b_ 32 LGISLLGIIGYIIH 45 (56)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 33556777777543
No 3
>d1kqfb2 f.23.22.1 (B:246-290) Iron-sulfur subunit of formate dehydrogenase N, transmembrane anchor {Escherichia coli [TaxId: 562]}
Probab=4.17 E-value=2.9e+02 Score=14.98 Aligned_cols=21 Identities=10% Similarity=0.018 Sum_probs=13.7
Q ss_pred HHHHHHHHHHhhhheecCCcc
Q psy14213 125 LTALLFAITGMCGYMKYGTAA 145 (302)
Q Consensus 125 ~~~~~y~~~g~~GY~~fG~~~ 145 (302)
..+..-...|++=|...|.+.
T Consensus 18 ~~~~~~~~~~~fHYv~vGPn~ 38 (45)
T d1kqfb2 18 AGFIATFAGLIFHYIGIGPNK 38 (45)
T ss_dssp HHHHHHHHHHHHHHHHHCCBC
T ss_pred HHHHHHHHHHHHhhheeCCCc
Confidence 344445556788888888764
No 4
>d1ciya3 f.1.3.1 (A:33-255) delta-Endotoxin (insectocide), N-terminal domain {Bacillus thuringiensis, CRYIA (A) [TaxId: 1428]}
Probab=4.00 E-value=2.8e+02 Score=20.40 Aligned_cols=28 Identities=11% Similarity=0.282 Sum_probs=19.6
Q ss_pred HHHHHHHHHHHHHhcCchhHHHHHhhhH
Q psy14213 211 REVIVLITWAFALVIPHLDLLISLFGAF 238 (302)
Q Consensus 211 r~~~~~~~~~iA~~iP~~~~v~~lvGs~ 238 (302)
-+.+-++..+++.++|..+.+.+++|-+
T Consensus 5 ~i~~~~~~~ll~~~iP~~g~~~~li~~l 32 (223)
T d1ciya3 5 DISLSLTQFLLSEFVPGAGFVLGLVDII 32 (223)
T ss_dssp HHHHHHHHHHHHCCSSSHHHHHHHHHHT
T ss_pred hhHHHHHHHHhhhcCCchHHHHHHHHHH
Confidence 3455567778888899988777665444
No 5
>d1dlca3 f.1.3.1 (A:61-289) delta-Endotoxin (insectocide), N-terminal domain {Bacillus thuringiensis tenebrionis, CRYIIIA (BT13) [TaxId: 1444]}
Probab=3.70 E-value=2.9e+02 Score=20.35 Aligned_cols=36 Identities=22% Similarity=0.407 Sum_probs=20.9
Q ss_pred hHHHHHHHHHHHHHh-cCchhHHHHHhhhHHhhhHHHHhhH
Q psy14213 210 FREVIVLITWAFALV-IPHLDLLISLFGAFCLASLGIIFPA 249 (302)
Q Consensus 210 ~r~~~~~~~~~iA~~-iP~~~~v~~lvGs~~~~~l~fi~P~ 249 (302)
+.+.+.++..+++.. +|..+.++++++ ..+.++.|.
T Consensus 6 v~~~~~i~~~il~~~~~P~~g~~~~~~~----~i~~~lwP~ 42 (229)
T d1dlca3 6 IQKGISVVGDLLGVVGFPFGGALVSFYT----NFLNTIWPS 42 (229)
T ss_dssp HHHHHHHHHHHTTSCBSCCHHHHHHHHH----HHHHHTSSS
T ss_pred HHHHHHHHHHHHHhcCCCcHHHHHHHHH----HHHHHhCCC
Confidence 344444455555444 788877776654 445666675
No 6
>d2e74d2 f.23.12.1 (D:12-45) ISP subunit from the cytochrome b6f complex, transmembrane anchor {Mastigocladus laminosus [TaxId: 83541]}
Probab=3.33 E-value=3.4e+02 Score=13.38 Aligned_cols=21 Identities=29% Similarity=0.675 Sum_probs=16.0
Q ss_pred HHHHH--HHHHHHHHhHHHHHHH
Q psy14213 20 LLISL--FGAFCLASLGIIFPAT 40 (302)
Q Consensus 20 ~~isl--~Ga~~~~~L~li~P~~ 40 (302)
.|+.| +|+.....|+-..|.+
T Consensus 6 qfmnlltfgt~tg~alg~lypvv 28 (34)
T d2e74d2 6 QFMNLLAFGTVTGVALGALYPLV 28 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhHHHHHHhhhhhHH
Confidence 45555 4889999999988875
No 7
>d2pila_ d.24.1.1 (A:) Pilin Gc {Neisseria gonorrhoeae [TaxId: 485]}
Probab=2.79 E-value=4e+02 Score=17.04 Aligned_cols=11 Identities=18% Similarity=0.223 Sum_probs=4.8
Q ss_pred HHHHhcCchhH
Q psy14213 220 AFALVIPHLDL 230 (302)
Q Consensus 220 ~iA~~iP~~~~ 230 (302)
+.++.+|.+..
T Consensus 16 Laaia~P~~~~ 26 (158)
T d2pila_ 16 LAAVALPAYQD 26 (158)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 33444554443
No 8
>d2axtm1 f.23.35.1 (M:1-36) Photosystem II reaction center protein M, PsbM {Thermosynechococcus elongatus [TaxId: 146786]}
Probab=2.63 E-value=4.4e+02 Score=13.30 Aligned_cols=17 Identities=18% Similarity=0.428 Sum_probs=10.8
Q ss_pred hhhHHHHhhHHHHHHHh
Q psy14213 240 LASLGIIFPAAIHILVL 256 (302)
Q Consensus 240 ~~~l~fi~P~l~~l~~~ 256 (302)
.+.+..+.|..|-+.++
T Consensus 10 At~LFilvPt~FLliLy 26 (36)
T d2axtm1 10 ATALFVLVPSVFLIILY 26 (36)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhh
Confidence 35566677887766544
No 9
>d2dgxa1 d.58.7.1 (A:563-635) Limkain-b1, LKAP {Human (Homo sapiens) [TaxId: 9606]}
Probab=2.42 E-value=3.5e+02 Score=16.28 Aligned_cols=20 Identities=20% Similarity=0.267 Sum_probs=15.9
Q ss_pred CccchhhhhhhcCChhHHHH
Q psy14213 4 SSDYRGAFALVIPHLDLLIS 23 (302)
Q Consensus 4 ~~~~~~~~a~~iP~l~~~is 23 (302)
-+||+..+.+-+|++..-+.
T Consensus 31 ~~dg~~~A~V~v~~~q~A~~ 50 (73)
T d2dgxa1 31 HTDYQLKAVVQMENLQDAIG 50 (73)
T ss_dssp CCSTTCCEEEEESSHHHHHH
T ss_pred ccCCcEEEEEEcCCHHHHHH
Confidence 36899999999999987433
No 10
>d2vv5a3 f.34.1.1 (A:27-112) Mechanosensitive channel protein MscS (YggB), transmembrane region {Escherichia coli [TaxId: 562]}
Probab=2.32 E-value=6.6e+02 Score=14.61 Aligned_cols=36 Identities=22% Similarity=0.120 Sum_probs=22.7
Q ss_pred hhhhhhhHHHHHHHHHHHHHh--cCchhHHHHHhhhHH
Q psy14213 204 LIVEYVFREVIVLITWAFALV--IPHLDLLISLFGAFC 239 (302)
Q Consensus 204 ~~~~~~~r~~~~~~~~~iA~~--iP~~~~v~~lvGs~~ 239 (302)
.......|..+......+++- --|.+.++...|...
T Consensus 41 ~~i~~~~~~~i~~i~~~~~L~~~Gi~~t~l~a~~G~~g 78 (86)
T d2vv5a3 41 DFLSALVRYGIIAFTLIAALGRVGVQTASVIAVLGAAG 78 (86)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTTTCCSTTHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHH
Confidence 344556777777776666664 456777777766643
Done!