RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy14213
(302 letters)
>gnl|CDD|216528 pfam01490, Aa_trans, Transmembrane amino acid transporter protein.
This transmembrane region is found in many amino acid
transporters including UNC-47 and MTR. UNC-47 encodes a
vesicular amino butyric acid (GABA) transporter, (VGAT).
UNC-47 is predicted to have 10 transmembrane domains.
MTR is a N system amino acid transporter system protein
involved in methyltryptophan resistance. Other members
of this family include proline transporters and amino
acid permeases.
Length = 406
Score = 100 bits (250), Expect = 6e-24
Identities = 53/192 (27%), Positives = 93/192 (48%)
Query: 102 IEHHMREPKKFRQPIGVFNVGIVLTALLFAITGMCGYMKYGTAAQGSMTLNIAEDQIMAQ 161
I++ M+ P KF+ V I++ +L+ + G+ GY+ +G +G++ LN+ + +
Sbjct: 215 IQNTMKSPSKFKAMTKVLLTAIIIVTVLYILVGLVGYLAFGNNVKGNILLNLPKSDWLID 274
Query: 162 IVKLLYAFVIFFSYPLQNFVPLELLWMNYIKQHMVEYSEKKKLIVEYVFREVIVLITWAF 221
I LL + SYPLQ F +++ ++ K ++ V R +V+IT+
Sbjct: 275 IANLLLVLHLLLSYPLQAFPIRQIVENLLFRKGASGKHNPKSKLLRVVIRSGLVVITYLI 334
Query: 222 ALVIPHLDLLISLFGAFCLASLGIIFPAAIHILVLRHEKVSFGPLGWILIKDIALIVFGI 281
A+ +P L +SL GA A L I P H+ + + +K S L I D+ IV G+
Sbjct: 335 AISVPFLGDFLSLVGATSGAPLTFILPPLFHLKLKKTKKKSLEKLWKPDILDVICIVIGL 394
Query: 282 FIMVSGTVISIM 293
+M G I+
Sbjct: 395 LLMAYGVAGLII 406
Score = 42.3 bits (100), Expect = 2e-04
Identities = 19/72 (26%), Positives = 31/72 (43%)
Query: 12 ALVIPHLDLLISLFGAFCLASLGIIFPATIHILVLRHERIGFGFLNWVLFKDIFLIAFGL 71
A+ +P L +SL GA A L I P H+ + + ++ L D+ I GL
Sbjct: 335 AISVPFLGDFLSLVGATSGAPLTFILPPLFHLKLKKTKKKSLEKLWKPDILDVICIVIGL 394
Query: 72 FVMVSGTVISLM 83
+M G ++
Sbjct: 395 LLMAYGVAGLII 406
>gnl|CDD|240313 PTZ00206, PTZ00206, amino acid transporter; Provisional.
Length = 467
Score = 39.9 bits (93), Expect = 0.001
Identities = 47/211 (22%), Positives = 84/211 (39%), Gaps = 27/211 (12%)
Query: 98 QIVKIEHHM----REPKKFRQPIGVFNVGIVLTALLFAITGMCGYMKYGTAAQGSMTLN- 152
QI E +M R KF + + + + ++ +T GYM +G GS+ L
Sbjct: 272 QITAYEVYMDMTNRSVGKF---VLASTIAMGMCFTMYVLTAFFGYMDFGRNVTGSVLLMY 328
Query: 153 --IAEDQIMAQIVKLLYAFVIFFSYPLQNFVPLELLWMNYIKQHMVEYSEKK----KLIV 206
+ E IM V +L +F SY L L+ ++ + +K K +
Sbjct: 329 DPVNEPAIMVGFVGVLVK--LFVSYALLGMACRNALY------DVIGWDARKVAFWKHCI 380
Query: 207 EYVFREVIVLITWAFALVIPHLDLLISLFGAFCLASLGIIFPAAIHILVLRHEKVSFGPL 266
V V++L+ L IP ++ ++ G+ LG I PA + + GP
Sbjct: 381 AVVTLSVVMLLC---GLFIPKINTVLGFAGSISGGLLGFILPALLFMYSGGFTWQKVGPF 437
Query: 267 GWILIKDIALIVFGIFIMVSGTVISIMDIFT 297
+ I +++ G+ +V GT +I +
Sbjct: 438 YY--ISTYVVLITGVIAIVFGTGATIWGVTV 466
>gnl|CDD|215559 PLN03074, PLN03074, auxin influx permease; Provisional.
Length = 473
Score = 32.8 bits (75), Expect = 0.23
Identities = 40/169 (23%), Positives = 67/169 (39%), Gaps = 30/169 (17%)
Query: 100 VKIEHHMREPKKFRQPIGVFNVGIVLTALLFAIT-----GMCGYMKYGTA------AQGS 148
V+I H M +P+KF+ I L A L+ +T Y +G A
Sbjct: 253 VEIMHAMWKPQKFKY--------IYLAATLYVLTLTLPSAAAVYWAFGDELLTHSNAFSL 304
Query: 149 MTLNIAEDQIMAQIVKLLYAFVIFFSYPLQNFVPLELLWMNYIKQHMVEYSEKKKLIVEY 208
+ + D A I+ L++ F+ F PL +W I H + K + +
Sbjct: 305 LPRSGWRD--AAVILMLIHQFITFGFA----CTPLYFVWEKAIGVH-----DTKSICLRA 353
Query: 209 VFREVIVLITWAFALVIPHLDLLISLFGAFCLASLGIIFPAAIHILVLR 257
+ R +V+ W A++ P + S GA ++ I P+ H+L R
Sbjct: 354 LARLPVVVPIWFLAIIFPFFGPINSAVGALLVSFTVYIIPSLAHMLTYR 402
>gnl|CDD|217905 pfam04114, Gaa1, Gaa1-like, GPI transamidase component. GPI
(glycosyl phosphatidyl inositol) transamidase is a
multi-protein complex. Gpi16, Gpi8 and Gaa1 for a
sub-complex of the GPI transamidase. GPI transamidase
that adds glycosylphosphatidylinositols (GPIs) to newly
synthesised proteins.
Length = 498
Score = 32.5 bits (74), Expect = 0.25
Identities = 28/119 (23%), Positives = 44/119 (36%), Gaps = 14/119 (11%)
Query: 2 NFSSDYRGAFALVIPHLDLLISLFGAFC-------LASLGIIFPA----TIHILVLRHER 50
S L IP LL ++ GA C I F + + +L L
Sbjct: 298 LVISFVVSLAFLSIPAYLLLSTISGASCFVLLILSQKFHIIEFLSARLKNVALLYLSLVS 357
Query: 51 IGFGFLNWVLFKDIFLIAFGLFVMVSGTVISLMDIFTAIQE---DFHPKTQIVKIEHHM 106
G N+ + I L+AF L ++V + + TA PK + ++E+HM
Sbjct: 358 TGLLLPNFAMLLLIGLLAFPLTLVVIILLNFSLGFVTAQLSVPIATEPKDENERVENHM 416
>gnl|CDD|223884 COG0814, SdaC, Amino acid permeases [Amino acid transport and
metabolism].
Length = 415
Score = 31.1 bits (71), Expect = 0.72
Identities = 36/205 (17%), Positives = 71/205 (34%), Gaps = 27/205 (13%)
Query: 99 IVKIEHHMREPKKFRQPIGVFNVGIVLTALLFAITGMCGYMKYGTAAQGSMTLNIAEDQI 158
I + ++MR+ K +G ++ +L+ + G + +G+ G++ E I
Sbjct: 212 IPSLVNYMRKNSKKAVRK-AILIGSLIALVLYILVGFFVFGCFGSLVFGNILAAK-EQNI 269
Query: 159 MAQIVKLLYAFVIFFSYPLQNF-----------VPLELLWMNYIKQHMVEYSEKKKLIVE 207
S L F V L L + + + K
Sbjct: 270 SLLSALAGVINSPILSIALNIFALFAIATSFLGVYLGL--FEGLADLFKKSNSKPGRKKT 327
Query: 208 YVFREVIVLI-----TWAFALVIPHLDLLISLFGAFCLASLGIIFPAAIHILVLRHEKVS 262
+ + LI W FA+ + + LI+ GA + +L I P K+
Sbjct: 328 GLLTFLPPLIFALLYPWGFAIALGYAGGLIATIGAPIIPALLFIKP------RKLIYKLP 381
Query: 263 -FGPLGWILIKDIALIVFGIFIMVS 286
G + + +++FGI +++S
Sbjct: 382 ALKVYGGNFLLLLLVLLFGILVILS 406
>gnl|CDD|219303 pfam07127, Nodulin_late, Late nodulin protein. This family
consists of several plant specific late nodulin
sequences which are homologous to the Pisum sativum
(Garden pea) ENOD3 protein. ENOD3 is expressed in the
late stages of root nodule formation and contains two
pairs of cysteine residues towards the C-terminus which
may be involved in metal-binding.
Length = 54
Score = 27.2 bits (61), Expect = 1.9
Identities = 8/16 (50%), Positives = 13/16 (81%)
Query: 159 MAQIVKLLYAFVIFFS 174
MA+I+K +YA ++F S
Sbjct: 1 MAKILKFVYAMILFLS 16
>gnl|CDD|184367 PRK13883, PRK13883, conjugal transfer protein TrbH; Provisional.
Length = 151
Score = 28.9 bits (65), Expect = 2.1
Identities = 13/45 (28%), Positives = 20/45 (44%), Gaps = 4/45 (8%)
Query: 123 IVLTALLFAITGMCGYMKYGTAAQGSMTLN--IAEDQIMAQIVKL 165
++L L A+ G C +YG Q S +A D + Q+ L
Sbjct: 5 VLLALLALALGG-CATSQYGNFVQASAADQQKLATDAV-QQLATL 47
>gnl|CDD|225765 COG3224, COG3224, Uncharacterized protein conserved in bacteria
[Function unknown].
Length = 195
Score = 27.8 bits (62), Expect = 4.9
Identities = 12/44 (27%), Positives = 16/44 (36%), Gaps = 1/44 (2%)
Query: 201 KKKLIVEYVFREVIVLITWAFALVIPHLDL-LISLFGAFCLASL 243
K L+V V V++ + L L L G C SL
Sbjct: 121 KMNLLVLLVLYPVVLGFNLLLGPKLGFLPLPTRVLIGTLCSVSL 164
>gnl|CDD|130764 TIGR01703, hybrid_clust, hydroxylamine reductase. This model
represents a family of proteins containing an unusual
4Fe-2S-2O hydrid cluster. Earlier reports had proposed a
6Fe-6S prismane cluster. This subfamily is heterogeneous
with respect to the presence or absence of a region of
about 100 amino acids not far from the N-terminus of the
protein. Members have been described as monomeric. The
general function is unknown, although members from E.
coli and several other species have hydroxylamine
reductase activity. Members are found in various
bacteria, in Archaea, and in several parasitic
eukaryotes: Giardia intestinalis, Trichomonas vaginalis,
and Entamoeba histolytica [Cellular processes,
Detoxification, Energy metabolism, Amino acids and
amines].
Length = 522
Score = 27.9 bits (62), Expect = 7.7
Identities = 9/42 (21%), Positives = 20/42 (47%), Gaps = 6/42 (14%)
Query: 127 ALLFAITGMCGYMKYGTAAQGSMTLNIAEDQIMAQIVKLLYA 168
LL+ I G+ Y+ + + L +++I A + + L +
Sbjct: 129 LLLYGIKGIAAYLYH------ARELGYDDEEIYAFLEEALAS 164
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.334 0.148 0.453
Gapped
Lambda K H
0.267 0.0760 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 16,461,215
Number of extensions: 1730016
Number of successful extensions: 3962
Number of sequences better than 10.0: 1
Number of HSP's gapped: 3901
Number of HSP's successfully gapped: 229
Length of query: 302
Length of database: 10,937,602
Length adjustment: 96
Effective length of query: 206
Effective length of database: 6,679,618
Effective search space: 1376001308
Effective search space used: 1376001308
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 39 (21.6 bits)
S2: 59 (26.4 bits)