RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy14213
(302 letters)
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 42.9 bits (100), Expect = 1e-04
Identities = 30/240 (12%), Positives = 79/240 (32%), Gaps = 65/240 (27%)
Query: 20 LLISLFGAFCLASLGIIFPATI----HILVLRHERI---GFGFLNWVLFKDIFLIAFGLF 72
+S+ AT H+ + I L ++ +F +F
Sbjct: 328 RRLSIIAESI-----RDGLATWDNWKHVNCDKLTTIIESSLNVLEPAEYRKMFD-RLSVF 381
Query: 73 ---VMVSGTVISLM--DIFTAIQED----FHPKTQIVKIEHHMREPKKFRQPIGVFNVGI 123
+ ++SL+ D+ + H + + K +PK+ I
Sbjct: 382 PPSAHIPTILLSLIWFDVIKSDVMVVVNKLHKYSLVEK------QPKEST---------I 426
Query: 124 VLTALLFAITGMCGYMKYGTAAQGSMTLNIAEDQIMAQIVKLLYAFVIFFSYPLQNFVPL 183
+ ++ + + + + + + ++ + I ++ + +P
Sbjct: 427 SIPSIYL-----------------ELKVKLENEYALHR--SIVDHYNIPKTFDSDDLIPP 467
Query: 184 EL--LWMNYIKQHM--VEYSEK----KKLIVEYVFREV-IVLITWAFALVIPHLDLLISL 234
L + ++I H+ +E+ E+ + + +++ F E I + A+ L+ L L
Sbjct: 468 YLDQYFYSHIGHHLKNIEHPERMTLFRMVFLDFRFLEQKIRHDSTAWNASGSILNTLQQL 527
Score = 33.7 bits (76), Expect = 0.093
Identities = 25/220 (11%), Positives = 63/220 (28%), Gaps = 47/220 (21%)
Query: 84 DIFTAIQEDFHPKTQIVKIEHHMREPKKFRQPIGVFNVGIVLTALLFAITGMCGYMKYGT 143
DI + ++ F ++ + + + ++ L + +
Sbjct: 20 DILSVFEDAFVDNFDCKDVQDMPKSILSKEEIDHIIMSKDAVSGTLRLFWTLLSKQE--- 76
Query: 144 AAQGSMTLNIAEDQIMAQIVKLLYAFVIFFSYPLQNFVPLELLWMNYIKQHMVEYSEKKK 203
+ + + + +++++ Y F + + P ++ YI+Q Y++ +
Sbjct: 77 --------EMVQ-KFVEEVLRINYKF-LMSPIKTEQRQP-SMMTRMYIEQRDRLYNDNQV 125
Query: 204 LIVEYVFRE--VIVLITWAFALVIPHLDLLISLFGAF-----CLASLGIIFPAAIHILVL 256
V R + L L P + + + G +A + V
Sbjct: 126 FAKYNVSRLQPYLKLRQALLEL-RPAKN--VLIDGVLGSGKTWVA-----------LDVC 171
Query: 257 RHEKVSFGPLGWILIKDIALIVFGIFIMVSGTVISIMDIF 296
KV + F IF + S +
Sbjct: 172 LSYKV------------QCKMDFKIFWLNLKNCNSPETVL 199
Score = 30.2 bits (67), Expect = 0.90
Identities = 40/300 (13%), Positives = 91/300 (30%), Gaps = 84/300 (28%)
Query: 42 HILVLRHERIGFGFLNWVL-----------FKDIFLIAFGLFVMVSGTVIS--------L 82
HI++ + G L W L +++ I + F+M + I +
Sbjct: 53 HIIMSKDAVSGTLRLFWTLLSKQEEMVQKFVEEVLRINYK-FLM---SPIKTEQRQPSMM 108
Query: 83 MDIFTAIQEDFHPKTQIVKIEHHMREPKKFRQPIGVFNVGIVLTALL-------FAITGM 135
++ ++ + Q+ ++++ + + + + ALL I G+
Sbjct: 109 TRMYIEQRDRLYNDNQVFA-KYNVSRLQPYLK---------LRQALLELRPAKNVLIDGV 158
Query: 136 CGYMKYGTAA--------QGSMTLNI---------AEDQIMAQIVKLLYAFVIFFSYPLQ 178
G K A Q M I + + ++ + KLLY ++
Sbjct: 159 LGSGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSD 218
Query: 179 NF--VPLELLWMNYIKQHMVEYSEKKK--LIVEYVF-REVI--------VLITWAFALVI 225
+ + L + + + +++ + L++ V + +L+T F V
Sbjct: 219 HSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKAWNAFNLSCKILLTTRFKQVT 278
Query: 226 PHLD-------LLISLFGAFCLA-SLGIIFPAAIHILV--LRHEKVSFGPLGWILIKDIA 275
L L + + L E ++ P + IA
Sbjct: 279 DFLSAATTTHISLDHHSMTLTPDEVKS-LLLKYLDCRPQDLPREVLTTNPR---RLSIIA 334
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 42.7 bits (100), Expect = 1e-04
Identities = 60/392 (15%), Positives = 109/392 (27%), Gaps = 158/392 (40%)
Query: 16 PHLDLLISLFGAFCLASLGIIFPATIHILVLRHERIGFGFLNWVLFKDI-----FLIAFG 70
+ LI L+ L + + G L W+ +L++
Sbjct: 182 VLVGDLIKFSAE-TLSEL-----IRTTLDAEKVFTQGLNILEWLENPSNTPDKDYLLS-- 233
Query: 71 LFVMVSGTVISLMDIFTAIQEDFHPKTQIVKIEHHMR-------EPKKFRQPI-GVFNVG 122
+ +S +I + Q+ H++ P + R + G
Sbjct: 234 --IPISCPLIGV--------------IQLA---HYVVTAKLLGFTPGELRSYLKGATGHS 274
Query: 123 I-VLTALLFAITG--------MCGYMKY----GTAAQG-----SMTLNIAEDQI------ 158
++TA+ A T + + G S+ +I ED +
Sbjct: 275 QGLVTAVAIAETDSWESFFVSVRKAITVLFFIGVRCYEAYPNTSLPPSILEDSLENNEGV 334
Query: 159 ---M--------AQIVKLLYAF--------VIFFSYPLQN----FV----PLELLWMNY- 190
M Q+ + + S L N V P L +N
Sbjct: 335 PSPMLSISNLTQEQVQDYVNKTNSHLPAGKQVEIS--LVNGAKNLVVSGPPQSLYGLNLT 392
Query: 191 ---------IKQHMVEYSEKKKLIVEYVFREVIV-----LITWAFALVIPHL-------- 228
+ Q + +SE +KL F V L+ A L+ L
Sbjct: 393 LRKAKAPSGLDQSRIPFSE-RKLKFSNRFLPVASPFHSHLLVPASDLINKDLVKNNVSFN 451
Query: 229 --DLLISLFGAF------------------CLASLGIIFPAAI-----HILVLRHEKVSF 263
D+ I ++ F C+ L + + HIL F
Sbjct: 452 AKDIQIPVYDTFDGSDLRVLSGSISERIVDCIIRLPVKWETTTQFKATHILD-------F 504
Query: 264 GPLGWILIKDIALIVF------GIFIMVSGTV 289
GP G + ++ G+ ++V+GT+
Sbjct: 505 GPGG---ASGLGVLTHRNKDGTGVRVIVAGTL 533
>1eys_H Photosynthetic reaction center; membrane protein complex, electron
transport; HET: BGL BCL BPH MQ8 HEM CRT LDA PEF; 2.20A
{Thermochromatium tepidum} SCOP: b.41.1.1 f.23.10.1
Length = 259
Score = 27.9 bits (62), Expect = 3.9
Identities = 12/45 (26%), Positives = 16/45 (35%), Gaps = 16/45 (35%)
Query: 149 MTLNIAEDQIMAQIVKLLYAFVIFFS--------------YPLQN 179
M I AQI ++AF +FF YPL +
Sbjct: 1 MPAGITHYIDAAQIT--IWAFWLFFFGLIIYLRREDKREGYPLDS 43
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.334 0.148 0.453
Gapped
Lambda K H
0.267 0.0513 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 4,838,824
Number of extensions: 300918
Number of successful extensions: 722
Number of sequences better than 10.0: 1
Number of HSP's gapped: 715
Number of HSP's successfully gapped: 20
Length of query: 302
Length of database: 6,701,793
Length adjustment: 93
Effective length of query: 209
Effective length of database: 4,105,140
Effective search space: 857974260
Effective search space used: 857974260
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 39 (21.6 bits)
S2: 57 (26.2 bits)