RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy14213
         (302 letters)



>d1rpya_ d.93.1.1 (A:) Adaptor protein Aps {Rat (Rattus norvegicus)
           [TaxId: 10116]}
          Length = 86

 Score = 25.7 bits (56), Expect = 3.0
 Identities = 12/72 (16%), Positives = 27/72 (37%), Gaps = 1/72 (1%)

Query: 147 GSMTLNIAEDQIMAQIVKLLYAFVIFFSYPLQNFVPLELLWMNYIKQHMVEYSEKKKLIV 206
           G+++   A   ++A   +    FVI  S        L   +    K   +  +   +  V
Sbjct: 10  GTLSRVKAAQLVLAGGPRSHGLFVIRQSETRPGECVLTFNFQGKAKHLRLSLNGHGQCHV 69

Query: 207 EY-VFREVIVLI 217
           ++  F+ V  ++
Sbjct: 70  QHLWFQSVFDML 81


>d1dvka_ a.72.1.1 (A:) Functional domain of the splicing factor
           Prp18 {Baker's yeast (Saccharomyces cerevisiae) [TaxId:
           4932]}
          Length = 169

 Score = 25.6 bits (56), Expect = 7.0
 Identities = 10/42 (23%), Positives = 18/42 (42%), Gaps = 15/42 (35%)

Query: 97  TQIVKIEHHMREPKKFRQ---------------PIGVFNVGI 123
             +  + +H+++PK+                  PIGV +VGI
Sbjct: 83  ISLATVLYHLQQPKEINLAVQSYMKLSIGNVAWPIGVTSVGI 124


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.334    0.148    0.453 

Gapped
Lambda     K      H
   0.267   0.0621    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,158,652
Number of extensions: 54533
Number of successful extensions: 198
Number of sequences better than 10.0: 1
Number of HSP's gapped: 198
Number of HSP's successfully gapped: 12
Length of query: 302
Length of database: 2,407,596
Length adjustment: 85
Effective length of query: 217
Effective length of database: 1,240,546
Effective search space: 269198482
Effective search space used: 269198482
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 39 (21.6 bits)
S2: 53 (24.4 bits)