BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy14216
(329 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1FFX|B Chain B, Tubulin:stathmin-Like Domain Complex
pdb|1FFX|D Chain D, Tubulin:stathmin-Like Domain Complex
pdb|1JFF|B Chain B, Refined Structure Of Alpha-Beta Tubulin From Zinc-Induced
Sheets Stabilized With Taxol
pdb|1IA0|B Chain B, Kif1a Head-Microtubule Complex Structure In Atp-Form
pdb|1SA0|B Chain B, Tubulin-Colchicine: Stathmin-Like Domain Complex
pdb|1SA0|D Chain D, Tubulin-Colchicine: Stathmin-Like Domain Complex
pdb|1SA1|B Chain B, Tubulin-Podophyllotoxin: Stathmin-Like Domain Complex
pdb|1SA1|D Chain D, Tubulin-Podophyllotoxin: Stathmin-Like Domain Complex
pdb|2HXF|B Chain B, Kif1a Head-Microtubule Complex Structure In Amppnp-Form
pdb|2HXH|B Chain B, Kif1a Head-Microtubule Complex Structure In Adp-Form
pdb|2P4N|B Chain B, Human Monomeric Kinesin (1bg2) And Bovine Tubulin (1jff)
Docked Into The 9-Angstrom Cryo-Em Map Of
Nucleotide-Free Kinesin Complexed To The Microtubule
pdb|3EDL|B Chain B, Kinesin13-Microtubule Ring Complex
pdb|3EDL|G Chain G, Kinesin13-Microtubule Ring Complex
pdb|3DCO|B Chain B, Drosophila Nod (3dc4) And Bovine Tubulin (1jff) Docked
Into The 11-Angstrom Cryo-Em Map Of Nucleotide-Free Nod
Complexed To The Microtubule
pdb|2WBE|B Chain B, Kinesin-5-Tubulin Complex With Amppnp
pdb|3IZ0|B Chain B, Human Ndc80 Bonsai Decorated Microtubule
pdb|4ABO|A Chain A, Mal3 Ch Domain Homology Model And Mammalian Tubulin (2xrp)
Docked Into The 8.6-Angstrom Cryo-Em Map Of
Mal3-Gtpgammas-Microtubules
pdb|4ABO|C Chain C, Mal3 Ch Domain Homology Model And Mammalian Tubulin (2xrp)
Docked Into The 8.6-Angstrom Cryo-Em Map Of
Mal3-Gtpgammas-Microtubules
pdb|4ABO|E Chain E, Mal3 Ch Domain Homology Model And Mammalian Tubulin (2xrp)
Docked Into The 8.6-Angstrom Cryo-Em Map Of
Mal3-Gtpgammas-Microtubules
pdb|4ABO|G Chain G, Mal3 Ch Domain Homology Model And Mammalian Tubulin (2xrp)
Docked Into The 8.6-Angstrom Cryo-Em Map Of
Mal3-Gtpgammas-Microtubules
Length = 445
Score = 576 bits (1484), Expect = e-165, Method: Compositional matrix adjust.
Identities = 265/307 (86%), Positives = 286/307 (93%)
Query: 5 KEAESCDCLQGFQLTHXXXXXXXXXXXXXXISKIREEYPDRIMNTFSIVPSPKVSDTVVE 64
KE+ESCDCLQGFQLTH ISKIREEYPDRIMNTFS+VPSPKVSDTVVE
Sbjct: 122 KESESCDCLQGFQLTHSLGGGTGSGMGTLLISKIREEYPDRIMNTFSVVPSPKVSDTVVE 181
Query: 65 PYNATLSIHQLVENTDETFCIDNEALYEICFRTLKLTTPTYGDLNHLVSAAMSGVTTCLR 124
PYNATLS+HQLVENTDET+CIDNEALY+ICFRTLKLTTPTYGDLNHLVSA MSGVTTCLR
Sbjct: 182 PYNATLSVHQLVENTDETYCIDNEALYDICFRTLKLTTPTYGDLNHLVSATMSGVTTCLR 241
Query: 125 FPGQLNSDLRKLAVNMVPFPRLHFFMPGFAPLTSRGSQQYRSLTVPELVQQMFDAKNMMA 184
FPGQLN+DLRKLAVNMVPFPRLHFFMPGFAPLTSRGSQQYR+LTVPEL QQMFDAKNMMA
Sbjct: 242 FPGQLNADLRKLAVNMVPFPRLHFFMPGFAPLTSRGSQQYRALTVPELTQQMFDAKNMMA 301
Query: 185 ACDPRHGKYLTVAAIFRGRMSMKEVDEQMLNIQNKNASYFVEWIPNNCKTAVCDIPPRGL 244
ACDPRHG+YLTVAA+FRGRMSMKEVDEQMLN+QNKN+SYFVEWIPNN KTAVCDIPPRGL
Sbjct: 302 ACDPRHGRYLTVAAVFRGRMSMKEVDEQMLNVQNKNSSYFVEWIPNNVKTAVCDIPPRGL 361
Query: 245 KMAATFIGNTTAIQELFRRISDQFDSMYKRKAFLHWYLGEGMDEMEFTEAASNVLDLISE 304
KM+ATFIGN+TAIQELF+RIS+QF +M++RKAFLHWY GEGMDEMEFTEA SN+ DL+SE
Sbjct: 362 KMSATFIGNSTAIQELFKRISEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVSE 421
Query: 305 YQQYQEA 311
YQQYQ+A
Sbjct: 422 YQQYQDA 428
>pdb|2XRP|A Chain A, Human Doublecortin N-Dc Repeat (1mjd) And Mammalian
Tubulin (1jff And 3hke) Docked Into The 8-Angstrom
Cryo-Em Map Of Doublecortin-Stabilised Microtubules
pdb|2XRP|C Chain C, Human Doublecortin N-Dc Repeat (1mjd) And Mammalian
Tubulin (1jff And 3hke) Docked Into The 8-Angstrom
Cryo-Em Map Of Doublecortin-Stabilised Microtubules
pdb|2XRP|E Chain E, Human Doublecortin N-Dc Repeat (1mjd) And Mammalian
Tubulin (1jff And 3hke) Docked Into The 8-Angstrom
Cryo-Em Map Of Doublecortin-Stabilised Microtubules
pdb|2XRP|G Chain G, Human Doublecortin N-Dc Repeat (1mjd) And Mammalian
Tubulin (1jff And 3hke) Docked Into The 8-Angstrom
Cryo-Em Map Of Doublecortin-Stabilised Microtubules
pdb|4ATU|A Chain A, Human Doublecortin N-Dc Repeat Plus Linker, And Tubulin
(2xrp) Docked Into An 8a Cryo-Em Map Of
Doublecortin-Stabilised Microtubules Reconstructed In
Absence Of Kinesin
pdb|4ATU|C Chain C, Human Doublecortin N-Dc Repeat Plus Linker, And Tubulin
(2xrp) Docked Into An 8a Cryo-Em Map Of
Doublecortin-Stabilised Microtubules Reconstructed In
Absence Of Kinesin
pdb|4ATU|E Chain E, Human Doublecortin N-Dc Repeat Plus Linker, And Tubulin
(2xrp) Docked Into An 8a Cryo-Em Map Of
Doublecortin-Stabilised Microtubules Reconstructed In
Absence Of Kinesin
pdb|4ATU|G Chain G, Human Doublecortin N-Dc Repeat Plus Linker, And Tubulin
(2xrp) Docked Into An 8a Cryo-Em Map Of
Doublecortin-Stabilised Microtubules Reconstructed In
Absence Of Kinesin
pdb|4ATX|A Chain A, Rigor Kinesin Motor Domain With An Ordered Neck-Linker,
Docked On Tubulin Dimer, Modelled Into The 8a Cryo-Em
Map Of Doublecortin-Microtubules Decorated With Kinesin
pdb|4AQV|B Chain B, Model Of Human Kinesin-5 Motor Domain (3hqd) And Mammalian
Tubulin Heterodimer (1jff) Docked Into The 9.7-angstrom
Cryo-em Map Of Microtubule-bound Kinesin-5 Motor Domain
In The Ampppnp State.
pdb|4AQW|B Chain B, Model Of Human Kinesin-5 Motor Domain (1ii6, 3hqd) And
Mammalian Tubulin Heterodimer (1jff) Docked Into The
9.5- Angstrom Cryo-em Map Of Microtubule-bound Kinesin-5
Motor Domain In The Rigor State
Length = 445
Score = 576 bits (1484), Expect = e-165, Method: Compositional matrix adjust.
Identities = 265/307 (86%), Positives = 286/307 (93%)
Query: 5 KEAESCDCLQGFQLTHXXXXXXXXXXXXXXISKIREEYPDRIMNTFSIVPSPKVSDTVVE 64
KE+ESCDCLQGFQLTH ISKIREEYPDRIMNTFS+VPSPKVSDTVVE
Sbjct: 122 KESESCDCLQGFQLTHSLGGGTGSGMGTLLISKIREEYPDRIMNTFSVVPSPKVSDTVVE 181
Query: 65 PYNATLSIHQLVENTDETFCIDNEALYEICFRTLKLTTPTYGDLNHLVSAAMSGVTTCLR 124
PYNATLS+HQLVENTDET+CIDNEALY+ICFRTLKLTTPTYGDLNHLVSA MSGVTTCLR
Sbjct: 182 PYNATLSVHQLVENTDETYCIDNEALYDICFRTLKLTTPTYGDLNHLVSATMSGVTTCLR 241
Query: 125 FPGQLNSDLRKLAVNMVPFPRLHFFMPGFAPLTSRGSQQYRSLTVPELVQQMFDAKNMMA 184
FPGQLN+DLRKLAVNMVPFPRLHFFMPGFAPLTSRGSQQYR+LTVPEL QQMFDAKNMMA
Sbjct: 242 FPGQLNADLRKLAVNMVPFPRLHFFMPGFAPLTSRGSQQYRALTVPELTQQMFDAKNMMA 301
Query: 185 ACDPRHGKYLTVAAIFRGRMSMKEVDEQMLNIQNKNASYFVEWIPNNCKTAVCDIPPRGL 244
ACDPRHG+YLTVAA+FRGRMSMKEVDEQMLN+QNKN+SYFVEWIPNN KTAVCDIPPRGL
Sbjct: 302 ACDPRHGRYLTVAAVFRGRMSMKEVDEQMLNVQNKNSSYFVEWIPNNVKTAVCDIPPRGL 361
Query: 245 KMAATFIGNTTAIQELFRRISDQFDSMYKRKAFLHWYLGEGMDEMEFTEAASNVLDLISE 304
KM+ATFIGN+TAIQELF+RIS+QF +M++RKAFLHWY GEGMDEMEFTEA SN+ DL+SE
Sbjct: 362 KMSATFIGNSTAIQELFKRISEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVSE 421
Query: 305 YQQYQEA 311
YQQYQ+A
Sbjct: 422 YQQYQDA 428
>pdb|1TUB|B Chain B, Tubulin Alpha-Beta Dimer, Electron Diffraction
pdb|1TVK|B Chain B, The Binding Mode Of Epothilone A On A,B-Tubulin By
Electron Crystallography
pdb|3J1T|C Chain C, High Affinity Dynein Microtubule Binding Domain - Tubulin
Complex
pdb|3J1U|C Chain C, Low Affinity Dynein Microtubule Binding Domain - Tubulin
Complex
Length = 427
Score = 574 bits (1479), Expect = e-164, Method: Compositional matrix adjust.
Identities = 264/306 (86%), Positives = 285/306 (93%)
Query: 5 KEAESCDCLQGFQLTHXXXXXXXXXXXXXXISKIREEYPDRIMNTFSIVPSPKVSDTVVE 64
KE+ESCDCLQGFQLTH ISKIREEYPDRIMNTFS+VPSPKVSDTVVE
Sbjct: 122 KESESCDCLQGFQLTHSLGGGTGSGMGTLLISKIREEYPDRIMNTFSVVPSPKVSDTVVE 181
Query: 65 PYNATLSIHQLVENTDETFCIDNEALYEICFRTLKLTTPTYGDLNHLVSAAMSGVTTCLR 124
PYNATLS+HQLVENTDET+CIDNEALY+ICFRTLKLTTPTYGDLNHLVSA MSGVTTCLR
Sbjct: 182 PYNATLSVHQLVENTDETYCIDNEALYDICFRTLKLTTPTYGDLNHLVSATMSGVTTCLR 241
Query: 125 FPGQLNSDLRKLAVNMVPFPRLHFFMPGFAPLTSRGSQQYRSLTVPELVQQMFDAKNMMA 184
FPGQLN+DLRKLAVNMVPFPRLHFFMPGFAPLTSRGSQQYR+LTVPEL QQMFDAKNMMA
Sbjct: 242 FPGQLNADLRKLAVNMVPFPRLHFFMPGFAPLTSRGSQQYRALTVPELTQQMFDAKNMMA 301
Query: 185 ACDPRHGKYLTVAAIFRGRMSMKEVDEQMLNIQNKNASYFVEWIPNNCKTAVCDIPPRGL 244
ACDPRHG+YLTVAA+FRGRMSMKEVDEQMLN+QNKN+SYFVEWIPNN KTAVCDIPPRGL
Sbjct: 302 ACDPRHGRYLTVAAVFRGRMSMKEVDEQMLNVQNKNSSYFVEWIPNNVKTAVCDIPPRGL 361
Query: 245 KMAATFIGNTTAIQELFRRISDQFDSMYKRKAFLHWYLGEGMDEMEFTEAASNVLDLISE 304
KM+ATFIGN+TAIQELF+RIS+QF +M++RKAFLHWY GEGMDEMEFTEA SN+ DL+SE
Sbjct: 362 KMSATFIGNSTAIQELFKRISEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVSE 421
Query: 305 YQQYQE 310
YQQYQ+
Sbjct: 422 YQQYQD 427
>pdb|4I4T|B Chain B, Crystal Structure Of Tubulin-rb3-ttl-zampanolide Complex
pdb|4I4T|D Chain D, Crystal Structure Of Tubulin-rb3-ttl-zampanolide Complex
pdb|4I50|B Chain B, Crystal Structure Of Tubulin-stathmin-ttl-epothilone A
Complex
pdb|4I50|D Chain D, Crystal Structure Of Tubulin-stathmin-ttl-epothilone A
Complex
pdb|4I55|B Chain B, Crystal Structure Of Tubulin-stathmin-ttl Complex
pdb|4I55|D Chain D, Crystal Structure Of Tubulin-stathmin-ttl Complex
pdb|4IIJ|B Chain B, Crystal Structure Of Tubulin-stathmin-ttl-apo Complex
pdb|4IIJ|D Chain D, Crystal Structure Of Tubulin-stathmin-ttl-apo Complex
pdb|4IHJ|B Chain B, Crystal Structure Of Tubulin-stathmin-ttl-adp Complex
pdb|4IHJ|D Chain D, Crystal Structure Of Tubulin-stathmin-ttl-adp Complex
Length = 445
Score = 573 bits (1477), Expect = e-164, Method: Compositional matrix adjust.
Identities = 264/307 (85%), Positives = 286/307 (93%)
Query: 5 KEAESCDCLQGFQLTHXXXXXXXXXXXXXXISKIREEYPDRIMNTFSIVPSPKVSDTVVE 64
KE+ESCDCLQGFQLTH ISKIREEYPDRIMNTFS++PSPKVSDTVVE
Sbjct: 122 KESESCDCLQGFQLTHSLGGGTGSGMGTLLISKIREEYPDRIMNTFSVMPSPKVSDTVVE 181
Query: 65 PYNATLSIHQLVENTDETFCIDNEALYEICFRTLKLTTPTYGDLNHLVSAAMSGVTTCLR 124
PYNATLS+HQLVENTDET+CIDNEALY+ICFRTLKLTTPTYGDLNHLVSA MSGVTTCLR
Sbjct: 182 PYNATLSVHQLVENTDETYCIDNEALYDICFRTLKLTTPTYGDLNHLVSATMSGVTTCLR 241
Query: 125 FPGQLNSDLRKLAVNMVPFPRLHFFMPGFAPLTSRGSQQYRSLTVPELVQQMFDAKNMMA 184
FPGQLN+DLRKLAVNMVPFPRLHFFMPGFAPLTSRGSQQYR+LTVPEL QQMFD+KNMMA
Sbjct: 242 FPGQLNADLRKLAVNMVPFPRLHFFMPGFAPLTSRGSQQYRALTVPELTQQMFDSKNMMA 301
Query: 185 ACDPRHGKYLTVAAIFRGRMSMKEVDEQMLNIQNKNASYFVEWIPNNCKTAVCDIPPRGL 244
ACDPRHG+YLTVAAIFRGRMSMKEVDEQMLN+QNKN+SYFVEWIPNN KTAVCDIPPRGL
Sbjct: 302 ACDPRHGRYLTVAAIFRGRMSMKEVDEQMLNVQNKNSSYFVEWIPNNVKTAVCDIPPRGL 361
Query: 245 KMAATFIGNTTAIQELFRRISDQFDSMYKRKAFLHWYLGEGMDEMEFTEAASNVLDLISE 304
KM+ATFIGN+TAIQELF+RIS+QF +M++RKAFLHWY GEGMDEMEFTEA SN+ DL+SE
Sbjct: 362 KMSATFIGNSTAIQELFKRISEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVSE 421
Query: 305 YQQYQEA 311
YQQYQ+A
Sbjct: 422 YQQYQDA 428
>pdb|1Z2B|B Chain B, Tubulin-Colchicine-Vinblastine: Stathmin-Like Domain
Complex
pdb|1Z2B|D Chain D, Tubulin-Colchicine-Vinblastine: Stathmin-Like Domain
Complex
Length = 445
Score = 571 bits (1472), Expect = e-163, Method: Compositional matrix adjust.
Identities = 263/307 (85%), Positives = 285/307 (92%)
Query: 5 KEAESCDCLQGFQLTHXXXXXXXXXXXXXXISKIREEYPDRIMNTFSIVPSPKVSDTVVE 64
KE+ESCDCLQGFQLTH ISKIREEYPDRIMNTFS+VPSPKVSDTVVE
Sbjct: 122 KESESCDCLQGFQLTHSLGGGTGSGMGTLLISKIREEYPDRIMNTFSVVPSPKVSDTVVE 181
Query: 65 PYNATLSIHQLVENTDETFCIDNEALYEICFRTLKLTTPTYGDLNHLVSAAMSGVTTCLR 124
PYNATLS+HQLVENTDET+ IDNEALY+ICFRTLKLTTPTYGDLNHLVSA MSGVTTCLR
Sbjct: 182 PYNATLSVHQLVENTDETYSIDNEALYDICFRTLKLTTPTYGDLNHLVSATMSGVTTCLR 241
Query: 125 FPGQLNSDLRKLAVNMVPFPRLHFFMPGFAPLTSRGSQQYRSLTVPELVQQMFDAKNMMA 184
FPGQLN+DLRKLAVNMVPFPRLHFFMPGFAPLTSRGSQQYR+LTVPEL QQMFD+KNMMA
Sbjct: 242 FPGQLNADLRKLAVNMVPFPRLHFFMPGFAPLTSRGSQQYRALTVPELTQQMFDSKNMMA 301
Query: 185 ACDPRHGKYLTVAAIFRGRMSMKEVDEQMLNIQNKNASYFVEWIPNNCKTAVCDIPPRGL 244
ACDPRHG+YLTVAA+FRGRMSMKEVDEQMLN+QNKN+SYFVEWIPNN KTAVCDIPPRGL
Sbjct: 302 ACDPRHGRYLTVAAVFRGRMSMKEVDEQMLNVQNKNSSYFVEWIPNNVKTAVCDIPPRGL 361
Query: 245 KMAATFIGNTTAIQELFRRISDQFDSMYKRKAFLHWYLGEGMDEMEFTEAASNVLDLISE 304
KM+ATFIGN+TAIQELF+RIS+QF +M++RKAFLHWY GEGMDEMEFTEA SN+ DL+SE
Sbjct: 362 KMSATFIGNSTAIQELFKRISEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVSE 421
Query: 305 YQQYQEA 311
YQQYQ+A
Sbjct: 422 YQQYQDA 428
>pdb|4F61|B Chain B, Tubulin:stathmin-Like Domain Complex
pdb|4F61|D Chain D, Tubulin:stathmin-Like Domain Complex
pdb|4F61|F Chain F, Tubulin:stathmin-Like Domain Complex
pdb|4F61|H Chain H, Tubulin:stathmin-Like Domain Complex
Length = 445
Score = 570 bits (1470), Expect = e-163, Method: Compositional matrix adjust.
Identities = 263/307 (85%), Positives = 285/307 (92%)
Query: 5 KEAESCDCLQGFQLTHXXXXXXXXXXXXXXISKIREEYPDRIMNTFSIVPSPKVSDTVVE 64
KE+ESCDCLQGFQLTH ISKIREEYPDRIMNTFS++PSPKVSDTVVE
Sbjct: 122 KESESCDCLQGFQLTHSLGGGTGSGMGTLLISKIREEYPDRIMNTFSVMPSPKVSDTVVE 181
Query: 65 PYNATLSIHQLVENTDETFCIDNEALYEICFRTLKLTTPTYGDLNHLVSAAMSGVTTCLR 124
PYNATLS+HQLVENTDET+ IDNEALY+ICFRTLKLTTPTYGDLNHLVSA MSGVTTCLR
Sbjct: 182 PYNATLSVHQLVENTDETYSIDNEALYDICFRTLKLTTPTYGDLNHLVSATMSGVTTCLR 241
Query: 125 FPGQLNSDLRKLAVNMVPFPRLHFFMPGFAPLTSRGSQQYRSLTVPELVQQMFDAKNMMA 184
FPGQLN+DLRKLAVNMVPFPRLHFFMPGFAPLTSRGSQQYR+LTVPEL QQMFD+KNMMA
Sbjct: 242 FPGQLNADLRKLAVNMVPFPRLHFFMPGFAPLTSRGSQQYRALTVPELTQQMFDSKNMMA 301
Query: 185 ACDPRHGKYLTVAAIFRGRMSMKEVDEQMLNIQNKNASYFVEWIPNNCKTAVCDIPPRGL 244
ACDPRHG+YLTVAAIFRGRMSMKEVDEQMLN+QNKN+SYFVEWIPNN KTAVCDIPPRGL
Sbjct: 302 ACDPRHGRYLTVAAIFRGRMSMKEVDEQMLNVQNKNSSYFVEWIPNNVKTAVCDIPPRGL 361
Query: 245 KMAATFIGNTTAIQELFRRISDQFDSMYKRKAFLHWYLGEGMDEMEFTEAASNVLDLISE 304
KM+ATFIGN+TAIQELF+RIS+QF +M++RKAFLHWY GEGMDEMEFTEA SN+ DL+SE
Sbjct: 362 KMSATFIGNSTAIQELFKRISEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVSE 421
Query: 305 YQQYQEA 311
YQQYQ+A
Sbjct: 422 YQQYQDA 428
>pdb|4DRX|B Chain B, Gtp-Tubulin In Complex With A Darpin
pdb|4DRX|D Chain D, Gtp-Tubulin In Complex With A Darpin
Length = 431
Score = 570 bits (1470), Expect = e-163, Method: Compositional matrix adjust.
Identities = 263/307 (85%), Positives = 285/307 (92%)
Query: 5 KEAESCDCLQGFQLTHXXXXXXXXXXXXXXISKIREEYPDRIMNTFSIVPSPKVSDTVVE 64
KE+ESCDCLQGFQLTH ISKIREEYPDRIMNTFS++PSPKVSDTVVE
Sbjct: 122 KESESCDCLQGFQLTHSLGGGTGSGMGTLLISKIREEYPDRIMNTFSVMPSPKVSDTVVE 181
Query: 65 PYNATLSIHQLVENTDETFCIDNEALYEICFRTLKLTTPTYGDLNHLVSAAMSGVTTCLR 124
PYNATLS+HQLVENTDET+ IDNEALY+ICFRTLKLTTPTYGDLNHLVSA MSGVTTCLR
Sbjct: 182 PYNATLSVHQLVENTDETYSIDNEALYDICFRTLKLTTPTYGDLNHLVSATMSGVTTCLR 241
Query: 125 FPGQLNSDLRKLAVNMVPFPRLHFFMPGFAPLTSRGSQQYRSLTVPELVQQMFDAKNMMA 184
FPGQLN+DLRKLAVNMVPFPRLHFFMPGFAPLTSRGSQQYR+LTVPEL QQMFD+KNMMA
Sbjct: 242 FPGQLNADLRKLAVNMVPFPRLHFFMPGFAPLTSRGSQQYRALTVPELTQQMFDSKNMMA 301
Query: 185 ACDPRHGKYLTVAAIFRGRMSMKEVDEQMLNIQNKNASYFVEWIPNNCKTAVCDIPPRGL 244
ACDPRHG+YLTVAAIFRGRMSMKEVDEQMLN+QNKN+SYFVEWIPNN KTAVCDIPPRGL
Sbjct: 302 ACDPRHGRYLTVAAIFRGRMSMKEVDEQMLNVQNKNSSYFVEWIPNNVKTAVCDIPPRGL 361
Query: 245 KMAATFIGNTTAIQELFRRISDQFDSMYKRKAFLHWYLGEGMDEMEFTEAASNVLDLISE 304
KM+ATFIGN+TAIQELF+RIS+QF +M++RKAFLHWY GEGMDEMEFTEA SN+ DL+SE
Sbjct: 362 KMSATFIGNSTAIQELFKRISEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVSE 421
Query: 305 YQQYQEA 311
YQQYQ+A
Sbjct: 422 YQQYQDA 428
>pdb|3DU7|B Chain B, Tubulin-Colchicine-Phomopsin A: Stathmin-Like Domain
Complex
pdb|3DU7|D Chain D, Tubulin-Colchicine-Phomopsin A: Stathmin-Like Domain
Complex
pdb|3E22|B Chain B, Tubulin-Colchicine-Soblidotin: Stathmin-Like Domain
Complex
pdb|3E22|D Chain D, Tubulin-Colchicine-Soblidotin: Stathmin-Like Domain
Complex
pdb|3HKB|B Chain B, Tubulin: Rb3 Stathmin-Like Domain Complex
pdb|3HKB|D Chain D, Tubulin: Rb3 Stathmin-Like Domain Complex
pdb|3HKC|B Chain B, Tubulin-Abt751: Rb3 Stathmin-Like Domain Complex
pdb|3HKC|D Chain D, Tubulin-Abt751: Rb3 Stathmin-Like Domain Complex
pdb|3HKD|B Chain B, Tubulin-Tn16 : Rb3 Stathmin-Like Domain Complex
pdb|3HKD|D Chain D, Tubulin-Tn16 : Rb3 Stathmin-Like Domain Complex
pdb|3HKE|B Chain B, Tubulin-T138067: Rb3 Stathmin-Like Domain Complex
pdb|3HKE|D Chain D, Tubulin-T138067: Rb3 Stathmin-Like Domain Complex
pdb|3N2G|B Chain B, Tubulin-Nsc 613863: Rb3 Stathmin-Like Domain Complex
pdb|3N2G|D Chain D, Tubulin-Nsc 613863: Rb3 Stathmin-Like Domain Complex
pdb|3N2K|B Chain B, Tubulin-Nsc 613862: Rb3 Stathmin-Like Domain Complex
pdb|3N2K|D Chain D, Tubulin-Nsc 613862: Rb3 Stathmin-Like Domain Complex
Length = 445
Score = 570 bits (1469), Expect = e-163, Method: Compositional matrix adjust.
Identities = 262/307 (85%), Positives = 285/307 (92%)
Query: 5 KEAESCDCLQGFQLTHXXXXXXXXXXXXXXISKIREEYPDRIMNTFSIVPSPKVSDTVVE 64
KE+ESCDCLQGFQLTH ISKIREEYPDRIMNTFS++PSPKVSDTVVE
Sbjct: 122 KESESCDCLQGFQLTHSLGGGTGSGMGTLLISKIREEYPDRIMNTFSVMPSPKVSDTVVE 181
Query: 65 PYNATLSIHQLVENTDETFCIDNEALYEICFRTLKLTTPTYGDLNHLVSAAMSGVTTCLR 124
PYNATLS+HQLVENTDET+ IDNEALY+ICFRTLKLTTPTYGDLNHLVSA MSGVTTCLR
Sbjct: 182 PYNATLSVHQLVENTDETYSIDNEALYDICFRTLKLTTPTYGDLNHLVSATMSGVTTCLR 241
Query: 125 FPGQLNSDLRKLAVNMVPFPRLHFFMPGFAPLTSRGSQQYRSLTVPELVQQMFDAKNMMA 184
FPGQLN+DLRKLAVNMVPFPRLHFFMPGFAPLTSRGSQQYR+LTVPEL QQMFD+KNMMA
Sbjct: 242 FPGQLNADLRKLAVNMVPFPRLHFFMPGFAPLTSRGSQQYRALTVPELTQQMFDSKNMMA 301
Query: 185 ACDPRHGKYLTVAAIFRGRMSMKEVDEQMLNIQNKNASYFVEWIPNNCKTAVCDIPPRGL 244
ACDPRHG+YLTVAA+FRGRMSMKEVDEQMLN+QNKN+SYFVEWIPNN KTAVCDIPPRGL
Sbjct: 302 ACDPRHGRYLTVAAVFRGRMSMKEVDEQMLNVQNKNSSYFVEWIPNNVKTAVCDIPPRGL 361
Query: 245 KMAATFIGNTTAIQELFRRISDQFDSMYKRKAFLHWYLGEGMDEMEFTEAASNVLDLISE 304
KM+ATFIGN+TAIQELF+RIS+QF +M++RKAFLHWY GEGMDEMEFTEA SN+ DL+SE
Sbjct: 362 KMSATFIGNSTAIQELFKRISEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVSE 421
Query: 305 YQQYQEA 311
YQQYQ+A
Sbjct: 422 YQQYQDA 428
>pdb|3RYC|B Chain B, Tubulin: Rb3 Stathmin-Like Domain Complex
pdb|3RYC|D Chain D, Tubulin: Rb3 Stathmin-Like Domain Complex
pdb|3RYF|B Chain B, Gtp-Tubulin: Rb3 Stathmin-Like Domain Complex
pdb|3RYF|D Chain D, Gtp-Tubulin: Rb3 Stathmin-Like Domain Complex
pdb|3RYH|B Chain B, Gmpcpp-Tubulin: Rb3 Stathmin-Like Domain Complex
pdb|3RYH|D Chain D, Gmpcpp-Tubulin: Rb3 Stathmin-Like Domain Complex
pdb|3RYI|B Chain B, Gdp-Tubulin: Rb3 Stathmin-Like Domain Complex
pdb|3RYI|D Chain D, Gdp-Tubulin: Rb3 Stathmin-Like Domain Complex
pdb|4F6R|B Chain B, Tubulin:stathmin-Like Domain Complex
pdb|3UT5|B Chain B, Tubulin-colchicine-ustiloxin: Stathmin-like Domain Complex
pdb|3UT5|D Chain D, Tubulin-colchicine-ustiloxin: Stathmin-like Domain Complex
pdb|4EB6|B Chain B, Tubulin-vinblastine: Stathmin-like Complex
pdb|4EB6|D Chain D, Tubulin-vinblastine: Stathmin-like Complex
Length = 445
Score = 568 bits (1464), Expect = e-162, Method: Compositional matrix adjust.
Identities = 262/307 (85%), Positives = 284/307 (92%)
Query: 5 KEAESCDCLQGFQLTHXXXXXXXXXXXXXXISKIREEYPDRIMNTFSIVPSPKVSDTVVE 64
KE+ESCDCLQGFQLTH ISKIREEYPDRIMNTFS++PSPKVSDTVVE
Sbjct: 122 KESESCDCLQGFQLTHSLGGGTGSGMGTLLISKIREEYPDRIMNTFSVMPSPKVSDTVVE 181
Query: 65 PYNATLSIHQLVENTDETFCIDNEALYEICFRTLKLTTPTYGDLNHLVSAAMSGVTTCLR 124
PYNATLS+HQLVENTDET+ IDNEALY+ICFRTLKLTTPTYGDLNHLVSA MSGVTTCLR
Sbjct: 182 PYNATLSVHQLVENTDETYSIDNEALYDICFRTLKLTTPTYGDLNHLVSATMSGVTTCLR 241
Query: 125 FPGQLNSDLRKLAVNMVPFPRLHFFMPGFAPLTSRGSQQYRSLTVPELVQQMFDAKNMMA 184
FPGQLN+DLRKLAVNMVPFPRLHFFMPGFAPLTSRGSQQYR+LTVPEL QQMFD+KNMMA
Sbjct: 242 FPGQLNADLRKLAVNMVPFPRLHFFMPGFAPLTSRGSQQYRALTVPELTQQMFDSKNMMA 301
Query: 185 ACDPRHGKYLTVAAIFRGRMSMKEVDEQMLNIQNKNASYFVEWIPNNCKTAVCDIPPRGL 244
ACDPRHG+YLTVA IFRGRMSMKEVDEQMLNIQNKN+SYFVEWIPNN KTAVCDIPPRGL
Sbjct: 302 ACDPRHGRYLTVATIFRGRMSMKEVDEQMLNIQNKNSSYFVEWIPNNVKTAVCDIPPRGL 361
Query: 245 KMAATFIGNTTAIQELFRRISDQFDSMYKRKAFLHWYLGEGMDEMEFTEAASNVLDLISE 304
KM++TFIGN+TAIQELF+RIS+QF +M++RKAFLHWY GEGMDEMEFTEA SN+ DL+SE
Sbjct: 362 KMSSTFIGNSTAIQELFKRISEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVSE 421
Query: 305 YQQYQEA 311
YQQYQ+A
Sbjct: 422 YQQYQDA 428
>pdb|4FFB|B Chain B, A Tog:alphaBETA-Tubulin Complex Structure Reveals
Conformation-Based Mechanisms For A Microtubule
Polymerase
Length = 463
Score = 487 bits (1254), Expect = e-138, Method: Compositional matrix adjust.
Identities = 222/309 (71%), Positives = 264/309 (85%)
Query: 5 KEAESCDCLQGFQLTHXXXXXXXXXXXXXXISKIREEYPDRIMNTFSIVPSPKVSDTVVE 64
+EAE CD LQGFQ+TH ISKIREE+PDR+M TFS++PSPK SDT VE
Sbjct: 122 REAEGCDSLQGFQITHSLGGGTGSGMGTLLISKIREEFPDRMMATFSVLPSPKRSDTRVE 181
Query: 65 PYNATLSIHQLVENTDETFCIDNEALYEICFRTLKLTTPTYGDLNHLVSAAMSGVTTCLR 124
PYNATLS+HQLVE++DETFCIDNEALY+IC RTLKL P+YGDLN+LVS+ MSGVTT LR
Sbjct: 182 PYNATLSVHQLVEHSDETFCIDNEALYDICQRTLKLNQPSYGDLNNLVSSVMSGVTTSLR 241
Query: 125 FPGQLNSDLRKLAVNMVPFPRLHFFMPGFAPLTSRGSQQYRSLTVPELVQQMFDAKNMMA 184
+PGQLNSDLRKLAVN+VPFPRLHFFM G+APLT+ GSQ +RSLTVPEL QQMFDAKNMMA
Sbjct: 242 YPGQLNSDLRKLAVNLVPFPRLHFFMVGYAPLTAIGSQSFRSLTVPELTQQMFDAKNMMA 301
Query: 185 ACDPRHGKYLTVAAIFRGRMSMKEVDEQMLNIQNKNASYFVEWIPNNCKTAVCDIPPRGL 244
A DPR+G+YLTVAA FRG++S+KEV+++M +Q+KN+ YFVEWIPNN +TAVC + P+GL
Sbjct: 302 AADPRNGRYLTVAAFFRGKVSVKEVEDEMHKVQSKNSDYFVEWIPNNVQTAVCSVAPQGL 361
Query: 245 KMAATFIGNTTAIQELFRRISDQFDSMYKRKAFLHWYLGEGMDEMEFTEAASNVLDLISE 304
MAATFI N+T+IQELF+R+ DQF +M+KRKAFLHWY EGMDE+EF+EA SN+ DL+SE
Sbjct: 362 DMAATFIANSTSIQELFKRVGDQFSAMFKRKAFLHWYTSEGMDELEFSEAESNMNDLVSE 421
Query: 305 YQQYQEAAV 313
YQQYQEA V
Sbjct: 422 YQQYQEATV 430
>pdb|3RYC|A Chain A, Tubulin: Rb3 Stathmin-Like Domain Complex
pdb|3RYC|C Chain C, Tubulin: Rb3 Stathmin-Like Domain Complex
pdb|3RYF|A Chain A, Gtp-Tubulin: Rb3 Stathmin-Like Domain Complex
pdb|3RYF|C Chain C, Gtp-Tubulin: Rb3 Stathmin-Like Domain Complex
pdb|3RYH|A Chain A, Gmpcpp-Tubulin: Rb3 Stathmin-Like Domain Complex
pdb|3RYH|C Chain C, Gmpcpp-Tubulin: Rb3 Stathmin-Like Domain Complex
pdb|3RYI|A Chain A, Gdp-Tubulin: Rb3 Stathmin-Like Domain Complex
pdb|3RYI|C Chain C, Gdp-Tubulin: Rb3 Stathmin-Like Domain Complex
pdb|4F61|A Chain A, Tubulin:stathmin-Like Domain Complex
pdb|4F61|C Chain C, Tubulin:stathmin-Like Domain Complex
pdb|4F61|E Chain E, Tubulin:stathmin-Like Domain Complex
pdb|4F61|G Chain G, Tubulin:stathmin-Like Domain Complex
pdb|4F6R|A Chain A, Tubulin:stathmin-Like Domain Complex
pdb|3UT5|A Chain A, Tubulin-colchicine-ustiloxin: Stathmin-like Domain Complex
pdb|3UT5|C Chain C, Tubulin-colchicine-ustiloxin: Stathmin-like Domain Complex
pdb|4EB6|A Chain A, Tubulin-vinblastine: Stathmin-like Complex
pdb|4EB6|C Chain C, Tubulin-vinblastine: Stathmin-like Complex
pdb|4I50|A Chain A, Crystal Structure Of Tubulin-stathmin-ttl-epothilone A
Complex
pdb|4I50|C Chain C, Crystal Structure Of Tubulin-stathmin-ttl-epothilone A
Complex
pdb|4IIJ|A Chain A, Crystal Structure Of Tubulin-stathmin-ttl-apo Complex
pdb|4IIJ|C Chain C, Crystal Structure Of Tubulin-stathmin-ttl-apo Complex
Length = 451
Score = 244 bits (624), Expect = 4e-65, Method: Compositional matrix adjust.
Identities = 118/311 (37%), Positives = 179/311 (57%), Gaps = 8/311 (2%)
Query: 5 KEAESCDCLQGFQLTHXXXXXXXXXXXXXXISKIREEYPDRIMNTFSIVPSPKVSDTVVE 64
K A+ C LQGF + H + ++ +Y + FSI P+P+VS VVE
Sbjct: 124 KLADQCTGLQGFLVFHSFGGGTGSGFTSLLMERLSVDYGKKSKLEFSIYPAPQVSTAVVE 183
Query: 65 PYNATLSIHQLVENTDETFCIDNEALYEICFRTLKLTTPTYGDLNHLVSAAMSGVTTCLR 124
PYN+ L+ H +E++D F +DNEA+Y+IC R L + PTY +LN L+S +S +T LR
Sbjct: 184 PYNSILTTHTTLEHSDCAFMVDNEAIYDICRRNLDIERPTYTNLNRLISQIVSSITASLR 243
Query: 125 FPGQLNSDLRKLAVNMVPFPRLHFFMPGFAPLTSRGSQQYRSLTVPELVQQMFDAKNMMA 184
F G LN DL + N+VP+PR+HF + +AP+ S + L+V E+ F+ N M
Sbjct: 244 FDGALNVDLTEFQTNLVPYPRIHFPLATYAPVISAEKAYHEQLSVAEITNACFEPANQMV 303
Query: 185 ACDPRHGKYLTVAAIFRGRMSMKEVDEQMLNIQNKNASYFVEWIPNNCKTAVCDIPPR-- 242
CDPRHGKY+ ++RG + K+V+ + I+ K + FV+W P K + PP
Sbjct: 304 KCDPRHGKYMACCLLYRGDVVPKDVNAAIATIKTKRSIQFVDWCPTGFKVGINYQPPTVV 363
Query: 243 ------GLKMAATFIGNTTAIQELFRRISDQFDSMYKRKAFLHWYLGEGMDEMEFTEAAS 296
++ A + NTTAI E + R+ +FD MY ++AF+HWY+GEGM+E EF+EA
Sbjct: 364 PGGDLAKVQRAVCMLSNTTAIAEAWARLDHKFDLMYAKRAFVHWYVGEGMEEGEFSEARE 423
Query: 297 NVLDLISEYQQ 307
++ L +Y++
Sbjct: 424 DMAALEKDYEE 434
>pdb|4I4T|A Chain A, Crystal Structure Of Tubulin-rb3-ttl-zampanolide Complex
pdb|4I4T|C Chain C, Crystal Structure Of Tubulin-rb3-ttl-zampanolide Complex
pdb|4I55|A Chain A, Crystal Structure Of Tubulin-stathmin-ttl Complex
pdb|4I55|C Chain C, Crystal Structure Of Tubulin-stathmin-ttl Complex
pdb|4IHJ|A Chain A, Crystal Structure Of Tubulin-stathmin-ttl-adp Complex
pdb|4IHJ|C Chain C, Crystal Structure Of Tubulin-stathmin-ttl-adp Complex
Length = 450
Score = 244 bits (624), Expect = 4e-65, Method: Compositional matrix adjust.
Identities = 118/311 (37%), Positives = 179/311 (57%), Gaps = 8/311 (2%)
Query: 5 KEAESCDCLQGFQLTHXXXXXXXXXXXXXXISKIREEYPDRIMNTFSIVPSPKVSDTVVE 64
K A+ C LQGF + H + ++ +Y + FSI P+P+VS VVE
Sbjct: 124 KLADQCTGLQGFLVFHSFGGGTGSGFTSLLMERLSVDYGKKSKLEFSIYPAPQVSTAVVE 183
Query: 65 PYNATLSIHQLVENTDETFCIDNEALYEICFRTLKLTTPTYGDLNHLVSAAMSGVTTCLR 124
PYN+ L+ H +E++D F +DNEA+Y+IC R L + PTY +LN L+S +S +T LR
Sbjct: 184 PYNSILTTHTTLEHSDCAFMVDNEAIYDICRRNLDIERPTYTNLNRLISQIVSSITASLR 243
Query: 125 FPGQLNSDLRKLAVNMVPFPRLHFFMPGFAPLTSRGSQQYRSLTVPELVQQMFDAKNMMA 184
F G LN DL + N+VP+PR+HF + +AP+ S + L+V E+ F+ N M
Sbjct: 244 FDGALNVDLTEFQTNLVPYPRIHFPLATYAPVISAEKAYHEQLSVAEITNACFEPANQMV 303
Query: 185 ACDPRHGKYLTVAAIFRGRMSMKEVDEQMLNIQNKNASYFVEWIPNNCKTAVCDIPPR-- 242
CDPRHGKY+ ++RG + K+V+ + I+ K + FV+W P K + PP
Sbjct: 304 KCDPRHGKYMACCLLYRGDVVPKDVNAAIATIKTKRSIQFVDWCPTGFKVGINYQPPTVV 363
Query: 243 ------GLKMAATFIGNTTAIQELFRRISDQFDSMYKRKAFLHWYLGEGMDEMEFTEAAS 296
++ A + NTTAI E + R+ +FD MY ++AF+HWY+GEGM+E EF+EA
Sbjct: 364 PGGDLAKVQRAVCMLSNTTAIAEAWARLDHKFDLMYAKRAFVHWYVGEGMEEGEFSEARE 423
Query: 297 NVLDLISEYQQ 307
++ L +Y++
Sbjct: 424 DMAALEKDYEE 434
>pdb|4DRX|A Chain A, Gtp-Tubulin In Complex With A Darpin
pdb|4DRX|C Chain C, Gtp-Tubulin In Complex With A Darpin
Length = 437
Score = 244 bits (623), Expect = 4e-65, Method: Compositional matrix adjust.
Identities = 118/311 (37%), Positives = 179/311 (57%), Gaps = 8/311 (2%)
Query: 5 KEAESCDCLQGFQLTHXXXXXXXXXXXXXXISKIREEYPDRIMNTFSIVPSPKVSDTVVE 64
K A+ C LQGF + H + ++ +Y + FSI P+P+VS VVE
Sbjct: 124 KLADQCTGLQGFLVFHSFGGGTGSGFTSLLMERLSVDYGKKSKLEFSIYPAPQVSTAVVE 183
Query: 65 PYNATLSIHQLVENTDETFCIDNEALYEICFRTLKLTTPTYGDLNHLVSAAMSGVTTCLR 124
PYN+ L+ H +E++D F +DNEA+Y+IC R L + PTY +LN L+S +S +T LR
Sbjct: 184 PYNSILTTHTTLEHSDCAFMVDNEAIYDICRRNLDIERPTYTNLNRLISQIVSSITASLR 243
Query: 125 FPGQLNSDLRKLAVNMVPFPRLHFFMPGFAPLTSRGSQQYRSLTVPELVQQMFDAKNMMA 184
F G LN DL + N+VP+PR+HF + +AP+ S + L+V E+ F+ N M
Sbjct: 244 FDGALNVDLTEFQTNLVPYPRIHFPLATYAPVISAEKAYHEQLSVAEITNACFEPANQMV 303
Query: 185 ACDPRHGKYLTVAAIFRGRMSMKEVDEQMLNIQNKNASYFVEWIPNNCKTAVCDIPPR-- 242
CDPRHGKY+ ++RG + K+V+ + I+ K + FV+W P K + PP
Sbjct: 304 KCDPRHGKYMACCLLYRGDVVPKDVNAAIATIKTKRSIQFVDWCPTGFKVGINYQPPTVV 363
Query: 243 ------GLKMAATFIGNTTAIQELFRRISDQFDSMYKRKAFLHWYLGEGMDEMEFTEAAS 296
++ A + NTTAI E + R+ +FD MY ++AF+HWY+GEGM+E EF+EA
Sbjct: 364 PGGDLAKVQRAVCMLSNTTAIAEAWARLDHKFDLMYAKRAFVHWYVGEGMEEGEFSEARE 423
Query: 297 NVLDLISEYQQ 307
++ L +Y++
Sbjct: 424 DMAALEKDYEE 434
>pdb|4FFB|A Chain A, A Tog:alphaBETA-Tubulin Complex Structure Reveals
Conformation-Based Mechanisms For A Microtubule
Polymerase
Length = 447
Score = 243 bits (621), Expect = 7e-65, Method: Compositional matrix adjust.
Identities = 115/309 (37%), Positives = 178/309 (57%), Gaps = 8/309 (2%)
Query: 5 KEAESCDCLQGFQLTHXXXXXXXXXXXXXXISKIREEYPDRIMNTFSIVPSPKVSDTVVE 64
K A+ CD LQGF TH + ++ EY + F++ P+P+VS +VVE
Sbjct: 125 KLADQCDGLQGFLFTHSLGGGTGSGLGSLLLEELSAEYGKKSKLEFAVYPAPQVSTSVVE 184
Query: 65 PYNATLSIHQLVENTDETFCIDNEALYEICFRTLKLTTPTYGDLNHLVSAAMSGVTTCLR 124
PYN L+ H +E+ D TF +DNEA+Y++C R L + P++ +LN+L++ +S VT LR
Sbjct: 185 PYNTVLTTHTTLEHADCTFMVDNEAIYDMCKRNLDIPRPSFANLNNLIAQVVSSVTASLR 244
Query: 125 FPGQLNSDLRKLAVNMVPFPRLHFFMPGFAPLTSRGSQQYRSLTVPELVQQMFDAKNMMA 184
F G LN DL + N+VP+PR+HF + ++P+ S+ + S +V E+ F+ N M
Sbjct: 245 FDGSLNVDLNEFQTNLVPYPRIHFPLVSYSPVLSKSKAFHESNSVSEITNACFEPGNQMV 304
Query: 185 ACDPRHGKYLTVAAIFRGRMSMKEVDEQMLNIQNKNASYFVEWIPNNCKTAVCDIPPRG- 243
CDPR GKY+ ++RG + ++V + ++NK V+W P K +C PP
Sbjct: 305 KCDPRDGKYMATCLLYRGDVVTRDVQRAVEQVKNKKTVQLVDWCPTGFKIGICYEPPTAT 364
Query: 244 -------LKMAATFIGNTTAIQELFRRISDQFDSMYKRKAFLHWYLGEGMDEMEFTEAAS 296
+ A + NTT+I E ++RI +FD MY ++AF+HWY+GEGM+E EFTEA
Sbjct: 365 PNSQLATVDRAVCMLSNTTSIAEAWKRIDRKFDLMYAKRAFVHWYVGEGMEEGEFTEARE 424
Query: 297 NVLDLISEY 305
++ L +Y
Sbjct: 425 DLAALERDY 433
>pdb|1SA0|A Chain A, Tubulin-Colchicine: Stathmin-Like Domain Complex
pdb|1SA0|C Chain C, Tubulin-Colchicine: Stathmin-Like Domain Complex
pdb|1SA1|A Chain A, Tubulin-Podophyllotoxin: Stathmin-Like Domain Complex
pdb|1SA1|C Chain C, Tubulin-Podophyllotoxin: Stathmin-Like Domain Complex
pdb|3EDL|F Chain F, Kinesin13-Microtubule Ring Complex
Length = 451
Score = 243 bits (620), Expect = 1e-64, Method: Compositional matrix adjust.
Identities = 117/311 (37%), Positives = 177/311 (56%), Gaps = 8/311 (2%)
Query: 5 KEAESCDCLQGFQLTHXXXXXXXXXXXXXXISKIREEYPDRIMNTFSIVPSPKVSDTVVE 64
K A+ C LQGF + H + ++ +Y + FSI P+P+VS VVE
Sbjct: 124 KLADQCTGLQGFSVFHSFGGGTGSGFTSLLMERLSVDYGKKSKLEFSIYPAPQVSTAVVE 183
Query: 65 PYNATLSIHQLVENTDETFCIDNEALYEICFRTLKLTTPTYGDLNHLVSAAMSGVTTCLR 124
PYN+ L+ H +E++D F +DNEA+Y+IC R L + PTY +LN L+ +S +T LR
Sbjct: 184 PYNSILTTHTTLEHSDCAFMVDNEAIYDICRRNLDIERPTYTNLNRLIGQIVSSITASLR 243
Query: 125 FPGQLNSDLRKLAVNMVPFPRLHFFMPGFAPLTSRGSQQYRSLTVPELVQQMFDAKNMMA 184
F G LN DL + N+VP+PR+HF + +AP+ S + L+V E+ F+ N M
Sbjct: 244 FDGALNVDLTEFQTNLVPYPRIHFPLATYAPVISAEKAYHEQLSVAEITNACFEPANQMV 303
Query: 185 ACDPRHGKYLTVAAIFRGRMSMKEVDEQMLNIQNKNASYFVEWIPNNCKTAVCDIPPR-- 242
CDPRHGKY+ ++RG + K+V+ + I+ K FV+W P K + PP
Sbjct: 304 KCDPRHGKYMACCLLYRGDVVPKDVNAAIATIKTKRTIQFVDWCPTGFKVGINYEPPTVV 363
Query: 243 ------GLKMAATFIGNTTAIQELFRRISDQFDSMYKRKAFLHWYLGEGMDEMEFTEAAS 296
++ A + NTTAI E + R+ +FD MY ++AF+HWY+GEGM+E EF+EA
Sbjct: 364 PGGDLAKVQRAVCMLSNTTAIAEAWARLDHKFDLMYAKRAFVHWYVGEGMEEGEFSEARE 423
Query: 297 NVLDLISEYQQ 307
++ L +Y++
Sbjct: 424 DMAALEKDYEE 434
>pdb|3HKB|A Chain A, Tubulin: Rb3 Stathmin-Like Domain Complex
pdb|3HKB|C Chain C, Tubulin: Rb3 Stathmin-Like Domain Complex
pdb|3HKC|A Chain A, Tubulin-Abt751: Rb3 Stathmin-Like Domain Complex
pdb|3HKC|C Chain C, Tubulin-Abt751: Rb3 Stathmin-Like Domain Complex
pdb|3HKD|A Chain A, Tubulin-Tn16 : Rb3 Stathmin-Like Domain Complex
pdb|3HKD|C Chain C, Tubulin-Tn16 : Rb3 Stathmin-Like Domain Complex
pdb|3HKE|A Chain A, Tubulin-T138067: Rb3 Stathmin-Like Domain Complex
pdb|3HKE|C Chain C, Tubulin-T138067: Rb3 Stathmin-Like Domain Complex
pdb|3N2G|A Chain A, Tubulin-Nsc 613863: Rb3 Stathmin-Like Domain Complex
pdb|3N2G|C Chain C, Tubulin-Nsc 613863: Rb3 Stathmin-Like Domain Complex
pdb|3N2K|A Chain A, Tubulin-Nsc 613862: Rb3 Stathmin-Like Domain Complex
pdb|3N2K|C Chain C, Tubulin-Nsc 613862: Rb3 Stathmin-Like Domain Complex
Length = 451
Score = 243 bits (619), Expect = 1e-64, Method: Compositional matrix adjust.
Identities = 117/311 (37%), Positives = 177/311 (56%), Gaps = 8/311 (2%)
Query: 5 KEAESCDCLQGFQLTHXXXXXXXXXXXXXXISKIREEYPDRIMNTFSIVPSPKVSDTVVE 64
K A+ C LQGF + H + ++ +Y + FSI P+P+VS VVE
Sbjct: 124 KLADQCTGLQGFLVFHSFGGGTGSGFTSLLMERLSVDYGKKSKLEFSIYPAPQVSTAVVE 183
Query: 65 PYNATLSIHQLVENTDETFCIDNEALYEICFRTLKLTTPTYGDLNHLVSAAMSGVTTCLR 124
PYN+ L+ H +E++D F +DNEA+Y+IC R L + PTY +LN L+ +S +T LR
Sbjct: 184 PYNSILTTHTTLEHSDCAFMVDNEAIYDICRRNLDIERPTYTNLNRLIGQIVSSITASLR 243
Query: 125 FPGQLNSDLRKLAVNMVPFPRLHFFMPGFAPLTSRGSQQYRSLTVPELVQQMFDAKNMMA 184
F G LN DL + N+VP+PR+HF + +AP+ S + L+V E+ F+ N M
Sbjct: 244 FDGALNVDLTEFQTNLVPYPRIHFPLATYAPVISAEKAYHEQLSVAEITNACFEPANQMV 303
Query: 185 ACDPRHGKYLTVAAIFRGRMSMKEVDEQMLNIQNKNASYFVEWIPNNCKTAVCDIPPR-- 242
CDPRHGKY+ ++RG + K+V+ + I+ K FV+W P K + PP
Sbjct: 304 KCDPRHGKYMACCLLYRGDVVPKDVNAAIATIKTKRTIQFVDWCPTGFKVGINYQPPTVV 363
Query: 243 ------GLKMAATFIGNTTAIQELFRRISDQFDSMYKRKAFLHWYLGEGMDEMEFTEAAS 296
++ A + NTTAI E + R+ +FD MY ++AF+HWY+GEGM+E EF+EA
Sbjct: 364 PGGDLAKVQRAVCMLSNTTAIAEAWARLDHKFDLMYAKRAFVHWYVGEGMEEGEFSEARE 423
Query: 297 NVLDLISEYQQ 307
++ L +Y++
Sbjct: 424 DMAALEKDYEE 434
>pdb|1Z2B|A Chain A, Tubulin-Colchicine-Vinblastine: Stathmin-Like Domain
Complex
pdb|1Z2B|C Chain C, Tubulin-Colchicine-Vinblastine: Stathmin-Like Domain
Complex
Length = 448
Score = 243 bits (619), Expect = 1e-64, Method: Compositional matrix adjust.
Identities = 117/311 (37%), Positives = 178/311 (57%), Gaps = 8/311 (2%)
Query: 5 KEAESCDCLQGFQLTHXXXXXXXXXXXXXXISKIREEYPDRIMNTFSIVPSPKVSDTVVE 64
K A+ C LQGF + H + ++ +Y + FSI P+P+VS VVE
Sbjct: 124 KLADQCTGLQGFLVFHSFGGGTGSGFTSLLMERLSVDYGKKSKLEFSIYPAPQVSTAVVE 183
Query: 65 PYNATLSIHQLVENTDETFCIDNEALYEICFRTLKLTTPTYGDLNHLVSAAMSGVTTCLR 124
PYN+ L+ H +E++D F +DNEA+Y+IC R L + PTY +LN L+ +S +T LR
Sbjct: 184 PYNSILTTHTTLEHSDCAFMVDNEAIYDICRRNLDIERPTYTNLNRLIGQIVSSITASLR 243
Query: 125 FPGQLNSDLRKLAVNMVPFPRLHFFMPGFAPLTSRGSQQYRSLTVPELVQQMFDAKNMMA 184
F G LN DL + N+VP+PR+HF + +AP+ S + L+V E+ F+ N M
Sbjct: 244 FDGALNVDLTEFQTNLVPYPRIHFPLATYAPVISAEKAYHEQLSVAEITNACFEPANQMV 303
Query: 185 ACDPRHGKYLTVAAIFRGRMSMKEVDEQMLNIQNKNASYFVEWIPNNCKTAVCDIPPR-- 242
CDPRHGKY+ ++RG + K+V+ + I+ K + FV+W P K + PP
Sbjct: 304 KCDPRHGKYMACCLLYRGDVVPKDVNAAIATIKTKRSIQFVDWCPTGFKVGINYQPPTVV 363
Query: 243 ------GLKMAATFIGNTTAIQELFRRISDQFDSMYKRKAFLHWYLGEGMDEMEFTEAAS 296
++ A + NTTAI E + R+ +FD MY ++AF+HWY+GEGM+E EF+EA
Sbjct: 364 PGGDLAKVQRAVCMLSNTTAIAEAWARLDHKFDLMYAKRAFVHWYVGEGMEEGEFSEARE 423
Query: 297 NVLDLISEYQQ 307
++ L +Y++
Sbjct: 424 DMAALEKDYEE 434
>pdb|3DU7|A Chain A, Tubulin-Colchicine-Phomopsin A: Stathmin-Like Domain
Complex
pdb|3DU7|C Chain C, Tubulin-Colchicine-Phomopsin A: Stathmin-Like Domain
Complex
pdb|3E22|A Chain A, Tubulin-Colchicine-Soblidotin: Stathmin-Like Domain
Complex
pdb|3E22|C Chain C, Tubulin-Colchicine-Soblidotin: Stathmin-Like Domain
Complex
Length = 449
Score = 242 bits (618), Expect = 2e-64, Method: Compositional matrix adjust.
Identities = 117/311 (37%), Positives = 178/311 (57%), Gaps = 8/311 (2%)
Query: 5 KEAESCDCLQGFQLTHXXXXXXXXXXXXXXISKIREEYPDRIMNTFSIVPSPKVSDTVVE 64
K A+ C LQGF + H + ++ +Y + FSI P+P+VS VVE
Sbjct: 124 KLADQCTGLQGFLVFHSFGGGTGSGFTSLLMERLSVDYGKKSKLEFSIYPAPQVSTAVVE 183
Query: 65 PYNATLSIHQLVENTDETFCIDNEALYEICFRTLKLTTPTYGDLNHLVSAAMSGVTTCLR 124
PYN+ L+ H +E++D F +DNEA+Y+IC R L + PTY +LN L+S +S +T LR
Sbjct: 184 PYNSILTTHTTLEHSDCAFMVDNEAIYDICRRNLDIERPTYTNLNRLMSQIVSSITASLR 243
Query: 125 FPGQLNSDLRKLAVNMVPFPRLHFFMPGFAPLTSRGSQQYRSLTVPELVQQMFDAKNMMA 184
F G LN DL + N+VP+PR+HF + +AP+ S + L+V E+ F+ N M
Sbjct: 244 FDGALNVDLTEFQTNLVPYPRIHFPLATYAPVISAEKAYHEQLSVAEITNACFEPANQMV 303
Query: 185 ACDPRHGKYLTVAAIFRGRMSMKEVDEQMLNIQNKNASYFVEWIPNNCKTAVCDIPPR-- 242
CDPRHGKY+ ++RG + K+V+ + I+ K FV+W P K + PP
Sbjct: 304 KCDPRHGKYMACCLLYRGDVVPKDVNAAIATIKTKRTIQFVDWCPTGFKVGINYQPPTVV 363
Query: 243 ------GLKMAATFIGNTTAIQELFRRISDQFDSMYKRKAFLHWYLGEGMDEMEFTEAAS 296
++ A + NTTA+ E + R+ +FD MY ++AF+HWY+GEGM+E EF+EA
Sbjct: 364 PGGDLAKVQRAVCMLSNTTAVAEAWARLDHKFDLMYAKRAFVHWYVGEGMEEGEFSEARE 423
Query: 297 NVLDLISEYQQ 307
++ L +Y++
Sbjct: 424 DMAALEKDYEE 434
>pdb|1FFX|A Chain A, Tubulin:stathmin-Like Domain Complex
pdb|1FFX|C Chain C, Tubulin:stathmin-Like Domain Complex
pdb|1IA0|A Chain A, Kif1a Head-Microtubule Complex Structure In Atp-Form
pdb|2HXF|A Chain A, Kif1a Head-Microtubule Complex Structure In Amppnp-Form
pdb|2HXH|A Chain A, Kif1a Head-Microtubule Complex Structure In Adp-Form
pdb|2P4N|A Chain A, Human Monomeric Kinesin (1bg2) And Bovine Tubulin (1jff)
Docked Into The 9-Angstrom Cryo-Em Map Of
Nucleotide-Free Kinesin Complexed To The Microtubule
Length = 451
Score = 242 bits (617), Expect = 2e-64, Method: Compositional matrix adjust.
Identities = 117/311 (37%), Positives = 176/311 (56%), Gaps = 8/311 (2%)
Query: 5 KEAESCDCLQGFQLTHXXXXXXXXXXXXXXISKIREEYPDRIMNTFSIVPSPKVSDTVVE 64
K A+ C LQGF + H + ++ +Y + FSI P+P+VS VVE
Sbjct: 124 KLADQCTGLQGFSVFHSFGGGTGSGFTSLLMERLSVDYGKKSKLEFSIYPAPQVSTAVVE 183
Query: 65 PYNATLSIHQLVENTDETFCIDNEALYEICFRTLKLTTPTYGDLNHLVSAAMSGVTTCLR 124
PYN+ L+ H +E++D F +DNEA+Y+IC R L + PTY +LN L+ +S +T LR
Sbjct: 184 PYNSILTTHTTLEHSDCAFMVDNEAIYDICRRNLDIERPTYTNLNRLIGQIVSSITASLR 243
Query: 125 FPGQLNSDLRKLAVNMVPFPRLHFFMPGFAPLTSRGSQQYRSLTVPELVQQMFDAKNMMA 184
F G LN DL + N+VP+PR HF + +AP+ S + L+V E+ F+ N M
Sbjct: 244 FDGALNVDLTEFQTNLVPYPRAHFPLATYAPVISAEKAYHEQLSVAEITNACFEPANQMV 303
Query: 185 ACDPRHGKYLTVAAIFRGRMSMKEVDEQMLNIQNKNASYFVEWIPNNCKTAVCDIPPR-- 242
CDPRHGKY+ ++RG + K+V+ + I+ K FV+W P K + PP
Sbjct: 304 KCDPRHGKYMACCLLYRGDVVPKDVNAAIATIKTKRTIQFVDWCPTGFKVGINYEPPTVV 363
Query: 243 ------GLKMAATFIGNTTAIQELFRRISDQFDSMYKRKAFLHWYLGEGMDEMEFTEAAS 296
++ A + NTTAI E + R+ +FD MY ++AF+HWY+GEGM+E EF+EA
Sbjct: 364 PGGDLAKVQRAVCMLSNTTAIAEAWARLDHKFDLMYAKRAFVHWYVGEGMEEGEFSEARE 423
Query: 297 NVLDLISEYQQ 307
++ L +Y++
Sbjct: 424 DMAALEKDYEE 434
>pdb|2XRP|B Chain B, Human Doublecortin N-Dc Repeat (1mjd) And Mammalian
Tubulin (1jff And 3hke) Docked Into The 8-Angstrom
Cryo-Em Map Of Doublecortin-Stabilised Microtubules
pdb|2XRP|D Chain D, Human Doublecortin N-Dc Repeat (1mjd) And Mammalian
Tubulin (1jff And 3hke) Docked Into The 8-Angstrom
Cryo-Em Map Of Doublecortin-Stabilised Microtubules
pdb|2XRP|F Chain F, Human Doublecortin N-Dc Repeat (1mjd) And Mammalian
Tubulin (1jff And 3hke) Docked Into The 8-Angstrom
Cryo-Em Map Of Doublecortin-Stabilised Microtubules
pdb|2XRP|H Chain H, Human Doublecortin N-Dc Repeat (1mjd) And Mammalian
Tubulin (1jff And 3hke) Docked Into The 8-Angstrom
Cryo-Em Map Of Doublecortin-Stabilised Microtubules
pdb|4ATU|B Chain B, Human Doublecortin N-Dc Repeat Plus Linker, And Tubulin
(2xrp) Docked Into An 8a Cryo-Em Map Of
Doublecortin-Stabilised Microtubules Reconstructed In
Absence Of Kinesin
pdb|4ATU|D Chain D, Human Doublecortin N-Dc Repeat Plus Linker, And Tubulin
(2xrp) Docked Into An 8a Cryo-Em Map Of
Doublecortin-Stabilised Microtubules Reconstructed In
Absence Of Kinesin
pdb|4ATU|F Chain F, Human Doublecortin N-Dc Repeat Plus Linker, And Tubulin
(2xrp) Docked Into An 8a Cryo-Em Map Of
Doublecortin-Stabilised Microtubules Reconstructed In
Absence Of Kinesin
pdb|4ATU|H Chain H, Human Doublecortin N-Dc Repeat Plus Linker, And Tubulin
(2xrp) Docked Into An 8a Cryo-Em Map Of
Doublecortin-Stabilised Microtubules Reconstructed In
Absence Of Kinesin
pdb|4ATX|B Chain B, Rigor Kinesin Motor Domain With An Ordered Neck-Linker,
Docked On Tubulin Dimer, Modelled Into The 8a Cryo-Em
Map Of Doublecortin-Microtubules Decorated With Kinesin
pdb|4AQV|A Chain A, Model Of Human Kinesin-5 Motor Domain (3hqd) And Mammalian
Tubulin Heterodimer (1jff) Docked Into The 9.7-angstrom
Cryo-em Map Of Microtubule-bound Kinesin-5 Motor Domain
In The Ampppnp State.
pdb|4AQW|A Chain A, Model Of Human Kinesin-5 Motor Domain (1ii6, 3hqd) And
Mammalian Tubulin Heterodimer (1jff) Docked Into The
9.5- Angstrom Cryo-em Map Of Microtubule-bound Kinesin-5
Motor Domain In The Rigor State
Length = 452
Score = 241 bits (616), Expect = 3e-64, Method: Compositional matrix adjust.
Identities = 117/311 (37%), Positives = 176/311 (56%), Gaps = 8/311 (2%)
Query: 5 KEAESCDCLQGFQLTHXXXXXXXXXXXXXXISKIREEYPDRIMNTFSIVPSPKVSDTVVE 64
K A+ C LQGF + H + ++ +Y + FSI P+P+VS VVE
Sbjct: 124 KLADQCTGLQGFSVFHSFGGGTGSGFTSLLMERLSVDYGKKSKLEFSIYPAPQVSTAVVE 183
Query: 65 PYNATLSIHQLVENTDETFCIDNEALYEICFRTLKLTTPTYGDLNHLVSAAMSGVTTCLR 124
PYN+ L+ H +E++D F +DNEA+Y+IC R L + PTY +LN L+ +S +T LR
Sbjct: 184 PYNSILTTHTTLEHSDCAFMVDNEAIYDICRRNLDIERPTYTNLNRLIGQIVSSITASLR 243
Query: 125 FPGQLNSDLRKLAVNMVPFPRLHFFMPGFAPLTSRGSQQYRSLTVPELVQQMFDAKNMMA 184
F G LN DL + N+VP+PR HF + +AP+ S + L+V E+ F+ N M
Sbjct: 244 FDGALNVDLTEFQTNLVPYPRGHFPLATYAPVISAEKAYHEQLSVAEITNACFEPANQMV 303
Query: 185 ACDPRHGKYLTVAAIFRGRMSMKEVDEQMLNIQNKNASYFVEWIPNNCKTAVCDIPPR-- 242
CDPRHGKY+ ++RG + K+V+ + I+ K FV+W P K + PP
Sbjct: 304 KCDPRHGKYMACCLLYRGDVVPKDVNAAIATIKTKRTIQFVDWCPTGFKVGINYEPPTVV 363
Query: 243 ------GLKMAATFIGNTTAIQELFRRISDQFDSMYKRKAFLHWYLGEGMDEMEFTEAAS 296
++ A + NTTAI E + R+ +FD MY ++AF+HWY+GEGM+E EF+EA
Sbjct: 364 PGGDLAKVQRAVCMLSNTTAIAEAWARLDHKFDLMYAKRAFVHWYVGEGMEEGEFSEARE 423
Query: 297 NVLDLISEYQQ 307
++ L +Y++
Sbjct: 424 DMAALEKDYEE 434
>pdb|1JFF|A Chain A, Refined Structure Of Alpha-Beta Tubulin From Zinc-Induced
Sheets Stabilized With Taxol
pdb|3EDL|A Chain A, Kinesin13-Microtubule Ring Complex
pdb|3DCO|A Chain A, Drosophila Nod (3dc4) And Bovine Tubulin (1jff) Docked
Into The 11-Angstrom Cryo-Em Map Of Nucleotide-Free Nod
Complexed To The Microtubule
pdb|2WBE|A Chain A, Kinesin-5-Tubulin Complex With Amppnp
pdb|3IZ0|A Chain A, Human Ndc80 Bonsai Decorated Microtubule
pdb|4ABO|B Chain B, Mal3 Ch Domain Homology Model And Mammalian Tubulin (2xrp)
Docked Into The 8.6-Angstrom Cryo-Em Map Of
Mal3-Gtpgammas-Microtubules
pdb|4ABO|D Chain D, Mal3 Ch Domain Homology Model And Mammalian Tubulin (2xrp)
Docked Into The 8.6-Angstrom Cryo-Em Map Of
Mal3-Gtpgammas-Microtubules
pdb|4ABO|F Chain F, Mal3 Ch Domain Homology Model And Mammalian Tubulin (2xrp)
Docked Into The 8.6-Angstrom Cryo-Em Map Of
Mal3-Gtpgammas-Microtubules
pdb|4ABO|H Chain H, Mal3 Ch Domain Homology Model And Mammalian Tubulin (2xrp)
Docked Into The 8.6-Angstrom Cryo-Em Map Of
Mal3-Gtpgammas-Microtubules
pdb|3J1T|B Chain B, High Affinity Dynein Microtubule Binding Domain - Tubulin
Complex
pdb|3J1U|B Chain B, Low Affinity Dynein Microtubule Binding Domain - Tubulin
Complex
Length = 451
Score = 241 bits (616), Expect = 3e-64, Method: Compositional matrix adjust.
Identities = 117/311 (37%), Positives = 176/311 (56%), Gaps = 8/311 (2%)
Query: 5 KEAESCDCLQGFQLTHXXXXXXXXXXXXXXISKIREEYPDRIMNTFSIVPSPKVSDTVVE 64
K A+ C LQGF + H + ++ +Y + FSI P+P+VS VVE
Sbjct: 124 KLADQCTGLQGFSVFHSFGGGTGSGFTSLLMERLSVDYGKKSKLEFSIYPAPQVSTAVVE 183
Query: 65 PYNATLSIHQLVENTDETFCIDNEALYEICFRTLKLTTPTYGDLNHLVSAAMSGVTTCLR 124
PYN+ L+ H +E++D F +DNEA+Y+IC R L + PTY +LN L+ +S +T LR
Sbjct: 184 PYNSILTTHTTLEHSDCAFMVDNEAIYDICRRNLDIERPTYTNLNRLIGQIVSSITASLR 243
Query: 125 FPGQLNSDLRKLAVNMVPFPRLHFFMPGFAPLTSRGSQQYRSLTVPELVQQMFDAKNMMA 184
F G LN DL + N+VP+PR HF + +AP+ S + L+V E+ F+ N M
Sbjct: 244 FDGALNVDLTEFQTNLVPYPRGHFPLATYAPVISAEKAYHEQLSVAEITNACFEPANQMV 303
Query: 185 ACDPRHGKYLTVAAIFRGRMSMKEVDEQMLNIQNKNASYFVEWIPNNCKTAVCDIPPR-- 242
CDPRHGKY+ ++RG + K+V+ + I+ K FV+W P K + PP
Sbjct: 304 KCDPRHGKYMACCLLYRGDVVPKDVNAAIATIKTKRTIQFVDWCPTGFKVGINYEPPTVV 363
Query: 243 ------GLKMAATFIGNTTAIQELFRRISDQFDSMYKRKAFLHWYLGEGMDEMEFTEAAS 296
++ A + NTTAI E + R+ +FD MY ++AF+HWY+GEGM+E EF+EA
Sbjct: 364 PGGDLAKVQRAVCMLSNTTAIAEAWARLDHKFDLMYAKRAFVHWYVGEGMEEGEFSEARE 423
Query: 297 NVLDLISEYQQ 307
++ L +Y++
Sbjct: 424 DMAALEKDYEE 434
>pdb|1TUB|A Chain A, Tubulin Alpha-Beta Dimer, Electron Diffraction
pdb|1TVK|A Chain A, The Binding Mode Of Epothilone A On A,B-Tubulin By
Electron Crystallography
Length = 440
Score = 241 bits (615), Expect = 4e-64, Method: Compositional matrix adjust.
Identities = 117/311 (37%), Positives = 176/311 (56%), Gaps = 8/311 (2%)
Query: 5 KEAESCDCLQGFQLTHXXXXXXXXXXXXXXISKIREEYPDRIMNTFSIVPSPKVSDTVVE 64
K A+ C LQGF + H + ++ +Y + FSI P+P+VS VVE
Sbjct: 124 KLADQCTGLQGFSVFHSFGGGTGSGFTSLLMERLSVDYGKKSKLEFSIYPAPQVSTAVVE 183
Query: 65 PYNATLSIHQLVENTDETFCIDNEALYEICFRTLKLTTPTYGDLNHLVSAAMSGVTTCLR 124
PYN+ L+ H +E++D F +DNEA+Y+IC R L + PTY +LN L+ +S +T LR
Sbjct: 184 PYNSILTTHTTLEHSDCAFMVDNEAIYDICRRNLDIERPTYTNLNRLIGQIVSSITASLR 243
Query: 125 FPGQLNSDLRKLAVNMVPFPRLHFFMPGFAPLTSRGSQQYRSLTVPELVQQMFDAKNMMA 184
F G LN DL + N+VP+PR HF + +AP+ S + L+V E+ F+ N M
Sbjct: 244 FDGALNVDLTEFQTNLVPYPRGHFPLATYAPVISAEKAYHEQLSVAEITNACFEPANQMV 303
Query: 185 ACDPRHGKYLTVAAIFRGRMSMKEVDEQMLNIQNKNASYFVEWIPNNCKTAVCDIPPR-- 242
CDPRHGKY+ ++RG + K+V+ + I+ K FV+W P K + PP
Sbjct: 304 KCDPRHGKYMACCLLYRGDVVPKDVNAAIATIKTKRTIQFVDWCPTGFKVGINYEPPTVV 363
Query: 243 ------GLKMAATFIGNTTAIQELFRRISDQFDSMYKRKAFLHWYLGEGMDEMEFTEAAS 296
++ A + NTTAI E + R+ +FD MY ++AF+HWY+GEGM+E EF+EA
Sbjct: 364 PGGDLAKVQRAVCMLSNTTAIAEAWARLDHKFDLMYAKRAFVHWYVGEGMEEGEFSEARE 423
Query: 297 NVLDLISEYQQ 307
++ L +Y++
Sbjct: 424 DMAALEKDYEE 434
>pdb|2BTQ|B Chain B, Structure Of Btubab Heterodimer From Prosthecobacter
Dejongeii
Length = 426
Score = 207 bits (526), Expect = 9e-54, Method: Compositional matrix adjust.
Identities = 106/301 (35%), Positives = 161/301 (53%), Gaps = 5/301 (1%)
Query: 8 ESCDCLQGFQLTHXXXXXXXXXXXXXXISKIREEYPDRIMNTFSIVPSPKVSDTVVEPYN 67
E LQGF +TH + ++R+ YP + + TFS+VPSP +SD+ VEPYN
Sbjct: 126 EKTKGLQGFLMTHSIGGGSGSGLGSLILERLRQAYPKKRIFTFSVVPSPLISDSAVEPYN 185
Query: 68 ATLSIHQLVENTDETFCIDNEALYEICFRTLKLTTPTYGDLNHLVSAAMSGVTTCLRFPG 127
A L++ ++++N D +DNEAL+ I L +P Y DLN++++ +S VT LRFPG
Sbjct: 186 AILTLQRILDNADGAVLLDNEALFRIAKAKLN-RSPNYMDLNNIIALIVSSVTASLRFPG 244
Query: 128 QLNSDLRKLAVNMVPFPRLHFFMPGFAPLTSRGSQQYRSLTVPELVQQMFDAKNMMAACD 187
+LN+DL + N+VPFP HF FAP+ G + P+L ++ F N AA D
Sbjct: 245 KLNTDLSEFVTNLVPFPGNHFLTASFAPMRGAGQEGQVRTNFPDLARETFAQDNFTAAID 304
Query: 188 PRHGKYLTVAAIFRGRMSMKEVDEQMLNIQNKNASYFVEWIP--NNCKTAVCDIPPRGLK 245
+ G YL +A+FRG + K+VDE M I+ K+ +Y ++P K + P G
Sbjct: 305 WQQGVYLAASALFRGDVKAKDVDENMATIR-KSLNY-ASYMPASGGLKLGYAETAPEGFA 362
Query: 246 MAATFIGNTTAIQELFRRISDQFDSMYKRKAFLHWYLGEGMDEMEFTEAASNVLDLISEY 305
+ + N T I +F R+ QFD M+ A+ HWY G+ +A + + L Y
Sbjct: 363 SSGLALVNHTGIAAVFERLIAQFDIMFDNHAYTHWYENAGVSRDMMAKARNQIATLAQSY 422
Query: 306 Q 306
+
Sbjct: 423 R 423
>pdb|2BTO|A Chain A, Structure Of Btuba From Prosthecobacter Dejongeii
pdb|2BTO|B Chain B, Structure Of Btuba From Prosthecobacter Dejongeii
pdb|2BTQ|A Chain A, Structure Of Btubab Heterodimer From Prosthecobacter
Dejongeii
Length = 473
Score = 196 bits (499), Expect = 1e-50, Method: Compositional matrix adjust.
Identities = 98/309 (31%), Positives = 162/309 (52%), Gaps = 3/309 (0%)
Query: 6 EAESCDCLQGFQLTHXXXXXXXXXXXXXXISKIREEYPDRIMNTFSIVPSPKVSDTVVEP 65
E + CD + G + H I ++E+Y + + + +++PSP+VS V EP
Sbjct: 127 EIDKCDNVGGIIVLHAIGGGTGSGFGALLIESLKEKYGEIPVLSCAVLPSPQVSSVVTEP 186
Query: 66 YNATLSIHQLVENTDETFCIDNEALYEICFRTLKLTTPTYGDLNHLVSAAMSGVTTCLRF 125
YN +++ L + D DNEAL+++ R + +PT DLN L++ A++G+T +RF
Sbjct: 187 YNTVFALNTLRRSADACLIFDNEALFDLAHRKWNIESPTVDDLNLLITEALAGITASMRF 246
Query: 126 PGQLNSD--LRKLAVNMVPFPRLHFFMPGFAPLTSRGSQQYRSLTVPELVQQMFDAKNMM 183
G L + LR+L N+VP P LHF M FAPLT ++ L + E+++ +FD ++
Sbjct: 247 SGFLTVEISLRELLTNLVPQPSLHFLMCAFAPLTPPDRSKFEELGIEEMIKSLFDNGSVF 306
Query: 184 AACDPRHGKYLTVAAIFRGRMSMKEVDEQMLNIQNKNASYFVEWIPNNCKTAVCDIPPRG 243
AAC P G++L+ A ++RG M K + + L + WIP K + P
Sbjct: 307 AACSPMEGRFLSTAVLYRGIMEDKPLADAALAAMREKLP-LTYWIPTAFKIGYVEQPGIS 365
Query: 244 LKMAATFIGNTTAIQELFRRISDQFDSMYKRKAFLHWYLGEGMDEMEFTEAASNVLDLIS 303
+ + + N T I + RI FD +++RKAF +WYL EGM E + ++ +L+
Sbjct: 366 HRKSMVLLANNTEIARVLDRICHNFDKLWQRKAFANWYLNEGMSEEQINVLRASAQELVQ 425
Query: 304 EYQQYQEAA 312
YQ +E+
Sbjct: 426 SYQVAEESG 434
>pdb|3CB2|A Chain A, Crystal Structure Of Human Gamma-Tubulin Bound To Gdp
pdb|3CB2|B Chain B, Crystal Structure Of Human Gamma-Tubulin Bound To Gdp
Length = 475
Score = 174 bits (441), Expect = 7e-44, Method: Compositional matrix adjust.
Identities = 97/313 (30%), Positives = 165/313 (52%), Gaps = 11/313 (3%)
Query: 5 KEAESCDCLQGFQLTHXXXXXXXXXXXXXXISKIREEYPDRIMNTFSIVPS-PKVSDTVV 63
+EA+ D L+GF L H + ++ + YP +++ T+S+ P+ ++SD VV
Sbjct: 124 READGSDSLEGFVLCHSIAGGTGSGLGSYLLERLNDRYPKKLVQTYSVFPNQDEMSDVVV 183
Query: 64 EPYNATLSIHQLVENTDETFCIDNEALYEICFRTLKLTTPTYGDLNHLVSAAMSGVTTCL 123
+PYN+ L++ +L +N D +DN AL I L + P++ +N LVS MS TT L
Sbjct: 184 QPYNSLLTLKRLTQNADCLVVLDNTALNRIATDRLHIQNPSFSQINQLVSTIMSASTTTL 243
Query: 124 RFPGQLNSDLRKLAVNMVPFPRLHFFMPGFAPLTSRGS-QQYRSLTVPELVQQMFDAKNM 182
R+PG +N+DL L +++P PRLHF M G+ PLT+ S R TV ++++++ KN+
Sbjct: 244 RYPGYMNNDLIGLIASLIPTPRLHFLMTGYTPLTTDQSVASVRKTTVLDVMRRLLQPKNV 303
Query: 183 MAACDPRHGK---YLTVAAIFRGRMSMKEVDEQMLNIQNKNASYFVEWIPNNCKTAVCDI 239
M + Y+ + I +G + +V + + I+ + + F+ W P + + A+
Sbjct: 304 MVSTGRDRQTNHCYIAILNIIQGEVDPTQVHKSLQRIRERKLANFIPWGPASIQVALSRK 363
Query: 240 P---PRGLKMAATFIGNTTAIQELFRRISDQFDSMYKRKAFLHWYLGEGMDEMEFTEAAS 296
P +++ + N T+I LF R Q+D + KR+AFL + E M + F E +
Sbjct: 364 SPYLPSAHRVSGLMMANHTSISSLFERTCRQYDKLRKREAFLEQFRKEDMFKDNFDEMDT 423
Query: 297 N---VLDLISEYQ 306
+ V LI EY
Sbjct: 424 SREIVQQLIDEYH 436
>pdb|1Z5V|A Chain A, Crystal Structure Of Human Gamma-Tubulin Bound To
Gtpgammas
pdb|1Z5W|A Chain A, Crystal Structure Of Gamma-Tubulin Bound To Gtp
Length = 474
Score = 174 bits (441), Expect = 7e-44, Method: Compositional matrix adjust.
Identities = 97/313 (30%), Positives = 165/313 (52%), Gaps = 11/313 (3%)
Query: 5 KEAESCDCLQGFQLTHXXXXXXXXXXXXXXISKIREEYPDRIMNTFSIVPS-PKVSDTVV 63
+EA+ D L+GF L H + ++ + YP +++ T+S+ P+ ++SD VV
Sbjct: 124 READGSDSLEGFVLCHSIAGGTGSGLGSYLLERLNDRYPKKLVQTYSVFPNQDEMSDVVV 183
Query: 64 EPYNATLSIHQLVENTDETFCIDNEALYEICFRTLKLTTPTYGDLNHLVSAAMSGVTTCL 123
+PYN+ L++ +L +N D +DN AL I L + P++ +N LVS MS TT L
Sbjct: 184 QPYNSLLTLKRLTQNADCLVVLDNTALNRIATDRLHIQNPSFSQINQLVSTIMSASTTTL 243
Query: 124 RFPGQLNSDLRKLAVNMVPFPRLHFFMPGFAPLTSRGS-QQYRSLTVPELVQQMFDAKNM 182
R+PG +N+DL L +++P PRLHF M G+ PLT+ S R TV ++++++ KN+
Sbjct: 244 RYPGYMNNDLIGLIASLIPTPRLHFLMTGYTPLTTDQSVASVRKTTVLDVMRRLLQPKNV 303
Query: 183 MAACDPRHGK---YLTVAAIFRGRMSMKEVDEQMLNIQNKNASYFVEWIPNNCKTAVCDI 239
M + Y+ + I +G + +V + + I+ + + F+ W P + + A+
Sbjct: 304 MVSTGRDRQTNHCYIAILNIIQGEVDPTQVHKSLQRIRERKLANFIPWGPASIQVALSRK 363
Query: 240 P---PRGLKMAATFIGNTTAIQELFRRISDQFDSMYKRKAFLHWYLGEGMDEMEFTEAAS 296
P +++ + N T+I LF R Q+D + KR+AFL + E M + F E +
Sbjct: 364 SPYLPSAHRVSGLMMANHTSISSLFERTCRQYDKLRKREAFLEQFRKEDMFKDNFDEMDT 423
Query: 297 N---VLDLISEYQ 306
+ V LI EY
Sbjct: 424 SREIVQQLIDEYH 436
>pdb|3RZI|A Chain A, The Structure Of 3-Deoxy-D-Arabino-Heptulosonate
7-Phosphate Synthase From Mycobacterium Tuberculosis
Cocrystallized And Complexed With Phenylalanine And
Tryptophan
pdb|3RZI|B Chain B, The Structure Of 3-Deoxy-D-Arabino-Heptulosonate
7-Phosphate Synthase From Mycobacterium Tuberculosis
Cocrystallized And Complexed With Phenylalanine And
Tryptophan
pdb|2YPO|A Chain A, 3-Deoxy-D-Arabino-Heptulosonate 7-Phosphate Synthase With
Phenylalanine Bound In Only One Site
pdb|2YPO|B Chain B, 3-Deoxy-D-Arabino-Heptulosonate 7-Phosphate Synthase With
Phenylalanine Bound In Only One Site
pdb|2YPP|A Chain A, 3-Deoxy-D-Arabino-Heptulosonate 7-Phosphate Synthase In
Complex With 3 Tyrosine Molecules
pdb|2YPP|B Chain B, 3-Deoxy-D-Arabino-Heptulosonate 7-Phosphate Synthase In
Complex With 3 Tyrosine Molecules
pdb|2YPQ|A Chain A, 3-Deoxy-D-Arabino-Heptulosonate 7-Phosphate Synthase With
Tryptophan And Tyrosine Bound
pdb|2YPQ|B Chain B, 3-Deoxy-D-Arabino-Heptulosonate 7-Phosphate Synthase With
Tryptophan And Tyrosine Bound
Length = 462
Score = 30.0 bits (66), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 24/85 (28%), Positives = 35/85 (41%), Gaps = 8/85 (9%)
Query: 135 KLAVNMVPFPRLHFF-------MPGFAPLTSR-GSQQYRSLTVPELVQQMFDAKNMMAAC 186
KL NM P + + PG L SR G+ + R L P + + ++ C
Sbjct: 306 KLGPNMTPELAVEYVERLDPHNKPGRLTLVSRMGNHKVRDLLPPIVEKVQATGHQVIWQC 365
Query: 187 DPRHGKYLTVAAIFRGRMSMKEVDE 211
DP HG + F+ R + VDE
Sbjct: 366 DPMHGNTHESSTGFKTRHFDRIVDE 390
>pdb|3KGF|A Chain A, The Structure Of 3-Deoxy-D-Arabino-Heptulosonate
7-Phosphate Synthase From Mycobacterium Tuberculosis
Complexed With Phenylalanine And Tryptophan
pdb|3KGF|B Chain B, The Structure Of 3-Deoxy-D-Arabino-Heptulosonate
7-Phosphate Synthase From Mycobacterium Tuberculosis
Complexed With Phenylalanine And Tryptophan
pdb|3NUD|A Chain A, The Structure Of 3-Deoxy-D-Arabino-Heptulosonate
7-Phosphate Synthase From Mycobacterium Tuberculosis
Complexed With Phenylalanine
pdb|3NUD|B Chain B, The Structure Of 3-Deoxy-D-Arabino-Heptulosonate
7-Phosphate Synthase From Mycobacterium Tuberculosis
Complexed With Phenylalanine
pdb|3NUE|A Chain A, The Structure Of 3-Deoxy-D-Arabino-Heptulosonate
7-Phosphate Synthase From Mycobacterium Tuberculosis
Complexed With Tryptophan
pdb|3NUE|B Chain B, The Structure Of 3-Deoxy-D-Arabino-Heptulosonate
7-Phosphate Synthase From Mycobacterium Tuberculosis
Complexed With Tryptophan
pdb|3NV8|A Chain A, The Structure Of 3-Deoxy-D-Arabino-Heptulosonate
7-Phosphate Synthase In Complex With Phosphoenol
Pyruvate And Manganese (Thesit-Free)
pdb|3NV8|B Chain B, The Structure Of 3-Deoxy-D-Arabino-Heptulosonate
7-Phosphate Synthase In Complex With Phosphoenol
Pyruvate And Manganese (Thesit-Free)
pdb|3PFP|A Chain A, Structure Of 3-Deoxy-D-Arabino-Heptulosonate 7-Phosphate
Synthase From Mycobacterium Tuberculosis In Complex With
An Active Site Inhibitor
pdb|3PFP|B Chain B, Structure Of 3-Deoxy-D-Arabino-Heptulosonate 7-Phosphate
Synthase From Mycobacterium Tuberculosis In Complex With
An Active Site Inhibitor
Length = 464
Score = 30.0 bits (66), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 24/85 (28%), Positives = 35/85 (41%), Gaps = 8/85 (9%)
Query: 135 KLAVNMVPFPRLHFF-------MPGFAPLTSR-GSQQYRSLTVPELVQQMFDAKNMMAAC 186
KL NM P + + PG L SR G+ + R L P + + ++ C
Sbjct: 308 KLGPNMTPELAVEYVERLDPHNKPGRLTLVSRMGNHKVRDLLPPIVEKVQATGHQVIWQC 367
Query: 187 DPRHGKYLTVAAIFRGRMSMKEVDE 211
DP HG + F+ R + VDE
Sbjct: 368 DPMHGNTHESSTGFKTRHFDRIVDE 392
>pdb|2W19|A Chain A, Non-Covalent Complex Between Dahp Synthase And Chorismate
Mutase From Mycobacterium Tuberculosis
pdb|2W19|B Chain B, Non-Covalent Complex Between Dahp Synthase And Chorismate
Mutase From Mycobacterium Tuberculosis
pdb|2W1A|A Chain A, Non-Covalent Complex Between Dahp Synthase And Chorismate
Mutase From Mycobacterium Tuberculosis With Bound Tsa
pdb|2W1A|B Chain B, Non-Covalent Complex Between Dahp Synthase And Chorismate
Mutase From Mycobacterium Tuberculosis With Bound Tsa
Length = 472
Score = 30.0 bits (66), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 24/85 (28%), Positives = 35/85 (41%), Gaps = 8/85 (9%)
Query: 135 KLAVNMVPFPRLHFF-------MPGFAPLTSR-GSQQYRSLTVPELVQQMFDAKNMMAAC 186
KL NM P + + PG L SR G+ + R L P + + ++ C
Sbjct: 316 KLGPNMTPELAVEYVERLDPHNKPGRLTLVSRMGNHKVRDLLPPIVEKVQATGHQVIWQC 375
Query: 187 DPRHGKYLTVAAIFRGRMSMKEVDE 211
DP HG + F+ R + VDE
Sbjct: 376 DPMHGNTHESSTGFKTRHFDRIVDE 400
>pdb|2B7O|A Chain A, The Structure Of 3-Deoxy-D-Arabino-Heptulosonate
7-Phosphate Synthase From Mycobacterium Tuberculosis
pdb|2B7O|B Chain B, The Structure Of 3-Deoxy-D-Arabino-Heptulosonate
7-Phosphate Synthase From Mycobacterium Tuberculosis
Length = 464
Score = 29.6 bits (65), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 19/62 (30%), Positives = 28/62 (45%), Gaps = 1/62 (1%)
Query: 151 PGFAPLTSR-GSQQYRSLTVPELVQQMFDAKNMMAACDPRHGKYLTVAAIFRGRMSMKEV 209
PG L SR G+ + R L P + + ++ CDP HG + F+ R + V
Sbjct: 331 PGRLTLVSRXGNHKVRDLLPPIVEKVQATGHQVIWQCDPXHGNTHESSTGFKTRHFDRIV 390
Query: 210 DE 211
DE
Sbjct: 391 DE 392
>pdb|1M2X|A Chain A, Crystal Structure Of The Metallo-beta-lactamase Blab Of
Chryseobacterium Meningosepticum In Complex With The
Inhibitor D- Captopril
pdb|1M2X|B Chain B, Crystal Structure Of The Metallo-beta-lactamase Blab Of
Chryseobacterium Meningosepticum In Complex With The
Inhibitor D- Captopril
pdb|1M2X|C Chain C, Crystal Structure Of The Metallo-beta-lactamase Blab Of
Chryseobacterium Meningosepticum In Complex With The
Inhibitor D- Captopril
pdb|1M2X|D Chain D, Crystal Structure Of The Metallo-beta-lactamase Blab Of
Chryseobacterium Meningosepticum In Complex With The
Inhibitor D- Captopril
Length = 223
Score = 29.3 bits (64), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 13/32 (40%), Positives = 21/32 (65%)
Query: 281 YLGEGMDEMEFTEAASNVLDLISEYQQYQEAA 312
Y+ G D+ + + + LDLI+EYQQ Q+A+
Sbjct: 191 YVVAGHDDWKDQRSIQHTLDLINEYQQKQKAS 222
>pdb|1W58|1 Chain 1, Ftsz Gmpcpp Soak I213 (M. Jannaschii)
pdb|1W59|A Chain A, Ftsz Dimer, Empty (M. Jannaschii)
pdb|1W59|B Chain B, Ftsz Dimer, Empty (M. Jannaschii)
pdb|1W5A|A Chain A, Ftsz Dimer, Mggtp Soak (M. Jannaschii)
pdb|1W5A|B Chain B, Ftsz Dimer, Mggtp Soak (M. Jannaschii)
pdb|1W5B|A Chain A, Ftsz Dimer, Gtp Soak (M. Jannaschii)
pdb|1W5B|B Chain B, Ftsz Dimer, Gtp Soak (M. Jannaschii)
pdb|2VAP|A Chain A, Ftsz Gdp M. Jannaschii
Length = 364
Score = 29.3 bits (64), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 24/85 (28%), Positives = 40/85 (47%), Gaps = 4/85 (4%)
Query: 49 TFSIVPSPKVSDTVVEPYNATLSIHQLVENTDETFCIDNEALYEICFRT-LKLTTPTYGD 107
T ++V P V + V NA + +L ++TD I NE L+EI LKL +
Sbjct: 154 TVAVVTLPFVMEGKVRMKNAMEGLERLKQHTDTLVVIPNEKLFEIVPNMPLKL---AFKV 210
Query: 108 LNHLVSAAMSGVTTCLRFPGQLNSD 132
+ ++ A+ G+ + G +N D
Sbjct: 211 ADEVLINAVKGLVELITKDGLINVD 235
>pdb|1FSZ|A Chain A, Crystal Structure Of The Cell-Division Protein Ftsz At
2.8a Resolution
Length = 372
Score = 28.9 bits (63), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 24/85 (28%), Positives = 40/85 (47%), Gaps = 4/85 (4%)
Query: 49 TFSIVPSPKVSDTVVEPYNATLSIHQLVENTDETFCIDNEALYEICFRT-LKLTTPTYGD 107
T ++V P V + V NA + +L ++TD I NE L+EI LKL +
Sbjct: 154 TVAVVTLPFVMEGKVRMKNAMEGLERLKQHTDTLVVIPNEKLFEIVPNMPLKL---AFKV 210
Query: 108 LNHLVSAAMSGVTTCLRFPGQLNSD 132
+ ++ A+ G+ + G +N D
Sbjct: 211 ADEVLINAVKGLVELITKDGLINVD 235
>pdb|1W5E|A Chain A, Ftsz W319y Mutant, P1 (m. Jannaschii)
pdb|1W5E|B Chain B, Ftsz W319y Mutant, P1 (m. Jannaschii)
pdb|1W5E|C Chain C, Ftsz W319y Mutant, P1 (m. Jannaschii)
pdb|1W5E|D Chain D, Ftsz W319y Mutant, P1 (m. Jannaschii)
pdb|1W5E|E Chain E, Ftsz W319y Mutant, P1 (m. Jannaschii)
pdb|1W5E|F Chain F, Ftsz W319y Mutant, P1 (m. Jannaschii)
pdb|1W5E|G Chain G, Ftsz W319y Mutant, P1 (m. Jannaschii)
pdb|1W5E|H Chain H, Ftsz W319y Mutant, P1 (m. Jannaschii)
pdb|1W5E|I Chain I, Ftsz W319y Mutant, P1 (m. Jannaschii)
Length = 364
Score = 28.9 bits (63), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 24/85 (28%), Positives = 40/85 (47%), Gaps = 4/85 (4%)
Query: 49 TFSIVPSPKVSDTVVEPYNATLSIHQLVENTDETFCIDNEALYEICFRT-LKLTTPTYGD 107
T ++V P V + V NA + +L ++TD I NE L+EI LKL +
Sbjct: 154 TVAVVTLPFVMEGKVRMKNAMEGLERLKQHTDTLVVIPNEKLFEIVPNMPLKL---AFKV 210
Query: 108 LNHLVSAAMSGVTTCLRFPGQLNSD 132
+ ++ A+ G+ + G +N D
Sbjct: 211 ADEVLINAVKGLVELITKDGLINVD 235
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.322 0.134 0.400
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 8,405,133
Number of Sequences: 62578
Number of extensions: 314253
Number of successful extensions: 687
Number of sequences better than 100.0: 34
Number of HSP's better than 100.0 without gapping: 30
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 637
Number of HSP's gapped (non-prelim): 34
length of query: 329
length of database: 14,973,337
effective HSP length: 99
effective length of query: 230
effective length of database: 8,778,115
effective search space: 2018966450
effective search space used: 2018966450
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 52 (24.6 bits)