RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy14216
(329 letters)
>gnl|CDD|100016 cd02187, beta_tubulin, The tubulin superfamily includes five
distinct families, the alpha-, beta-, gamma-, delta-,
and epsilon-tubulins and a sixth family (zeta-tubulin)
which is present only in kinetoplastid protozoa. The
alpha- and beta-tubulins are the major components of
microtubules, while gamma-tubulin plays a major role in
the nucleation of microtubule assembly. The delta- and
epsilon-tubulins are widespread but unlike the alpha,
beta, and gamma-tubulins they are not ubiquitous among
eukaryotes. The alpha/beta-tubulin heterodimer is the
structural subunit of microtubules. The alpha- and
beta-tubulins share 40% amino-acid sequence identity,
exist in several isotype forms, and undergo a variety of
posttranslational modifications. The structures of
alpha- and beta-tubulin are basically identical: each
monomer is formed by a core of two beta-sheets
surrounded by alpha-helices. The monomer structure is
very compact, but can be divided into three regions
based on function: the amino-terminal nucleotide-binding
region, an intermediate taxol-binding region and the
carboxy-terminal region which probably constitutes the
binding surface for motor proteins.
Length = 425
Score = 701 bits (1811), Expect = 0.0
Identities = 274/305 (89%), Positives = 294/305 (96%)
Query: 5 KEAESCDCLQGFQLTHSLGGGTGSGMGTLMISKIREEYPDRIMNTFSIVPSPKVSDTVVE 64
KEAESCDCLQGFQLTHSLGGGTGSGMGTL+ISKIREEYPDRIM TFS+ PSPKVSDTVVE
Sbjct: 121 KEAESCDCLQGFQLTHSLGGGTGSGMGTLLISKIREEYPDRIMATFSVFPSPKVSDTVVE 180
Query: 65 PYNATLSIHQLVENTDETFCIDNEALYEICFRTLKLTTPTYGDLNHLVSAAMSGVTTCLR 124
PYNATLS+HQLVEN+DETFCIDNEALY+ICFRTLKLT PTYGDLNHLVSA MSG+TTCLR
Sbjct: 181 PYNATLSVHQLVENSDETFCIDNEALYDICFRTLKLTNPTYGDLNHLVSAVMSGITTCLR 240
Query: 125 FPGQLNSDLRKLAVNMVPFPRLHFFMPGFAPLTSRGSQQYRSLTVPELVQQMFDAKNMMA 184
FPGQLNSDLRKLAVNMVPFPRLHFFMPGFAPLTSRGSQQYR+LTVPEL QQMFDAKNMMA
Sbjct: 241 FPGQLNSDLRKLAVNMVPFPRLHFFMPGFAPLTSRGSQQYRALTVPELTQQMFDAKNMMA 300
Query: 185 ACDPRHGKYLTVAAIFRGRMSMKEVDEQMLNIQNKNASYFVEWIPNNCKTAVCDIPPRGL 244
ACDPRHG+YLT AAIFRGR+SMKEVDEQMLN+QNKN+SYFVEWIPNN KTAVCDIPPRGL
Sbjct: 301 ACDPRHGRYLTAAAIFRGRVSMKEVDEQMLNVQNKNSSYFVEWIPNNVKTAVCDIPPRGL 360
Query: 245 KMAATFIGNTTAIQELFRRISDQFDSMYKRKAFLHWYLGEGMDEMEFTEAASNVLDLISE 304
KM+ATFIGN+TAIQELF+RIS+QF +M++RKAFLHWY GEGMDEMEFTEA SN+ DL+SE
Sbjct: 361 KMSATFIGNSTAIQELFKRISEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVSE 420
Query: 305 YQQYQ 309
YQQYQ
Sbjct: 421 YQQYQ 425
>gnl|CDD|240228 PTZ00010, PTZ00010, tubulin beta chain; Provisional.
Length = 445
Score = 667 bits (1722), Expect = 0.0
Identities = 265/320 (82%), Positives = 296/320 (92%)
Query: 5 KEAESCDCLQGFQLTHSLGGGTGSGMGTLMISKIREEYPDRIMNTFSIVPSPKVSDTVVE 64
KEAESCDCLQGFQ+THSLGGGTGSGMGTL+ISK+REEYPDRIM TFS+ PSPKVSDTVVE
Sbjct: 122 KEAESCDCLQGFQITHSLGGGTGSGMGTLLISKLREEYPDRIMMTFSVFPSPKVSDTVVE 181
Query: 65 PYNATLSIHQLVENTDETFCIDNEALYEICFRTLKLTTPTYGDLNHLVSAAMSGVTTCLR 124
PYNATLS+HQLVEN DE+ CIDNEALY+ICFRTLKLTTPTYGDLNHLVSA MSGVT CLR
Sbjct: 182 PYNATLSVHQLVENADESMCIDNEALYDICFRTLKLTTPTYGDLNHLVSAVMSGVTCCLR 241
Query: 125 FPGQLNSDLRKLAVNMVPFPRLHFFMPGFAPLTSRGSQQYRSLTVPELVQQMFDAKNMMA 184
FPGQLNSDLRKLAVN+VPFPRLHFFM GFAPLTSRGSQQYR L+VPEL QQMFDAKNMM
Sbjct: 242 FPGQLNSDLRKLAVNLVPFPRLHFFMMGFAPLTSRGSQQYRGLSVPELTQQMFDAKNMMC 301
Query: 185 ACDPRHGKYLTVAAIFRGRMSMKEVDEQMLNIQNKNASYFVEWIPNNCKTAVCDIPPRGL 244
A DPRHG+YLT +A+FRGRMS KEVDEQMLN+QNKN+SYFVEWIPNN K++VCDIPP+GL
Sbjct: 302 AADPRHGRYLTASALFRGRMSTKEVDEQMLNVQNKNSSYFVEWIPNNIKSSVCDIPPKGL 361
Query: 245 KMAATFIGNTTAIQELFRRISDQFDSMYKRKAFLHWYLGEGMDEMEFTEAASNVLDLISE 304
KM+ TFIGN+TAIQE+FRR+ +QF +M++RKAFLHWY GEGMDEMEFTEA SN+ DL+SE
Sbjct: 362 KMSVTFIGNSTAIQEMFRRVGEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVSE 421
Query: 305 YQQYQEAAVDDEGGEDDNEE 324
YQQYQ+A V++EG D+ EE
Sbjct: 422 YQQYQDATVEEEGEFDEEEE 441
>gnl|CDD|215107 PLN00220, PLN00220, tubulin beta chain; Provisional.
Length = 447
Score = 661 bits (1708), Expect = 0.0
Identities = 256/325 (78%), Positives = 296/325 (91%)
Query: 5 KEAESCDCLQGFQLTHSLGGGTGSGMGTLMISKIREEYPDRIMNTFSIVPSPKVSDTVVE 64
KEAE+CDCLQGFQ+ HSLGGGTGSGMGTL+ISKIREEYPDR+M TFS+ PSPKVSDTVVE
Sbjct: 122 KEAENCDCLQGFQVCHSLGGGTGSGMGTLLISKIREEYPDRMMLTFSVFPSPKVSDTVVE 181
Query: 65 PYNATLSIHQLVENTDETFCIDNEALYEICFRTLKLTTPTYGDLNHLVSAAMSGVTTCLR 124
PYNATLS+HQLVEN DE +DNEALY+ICFRTLKLTTP++GDLNHL+SA MSGVT CLR
Sbjct: 182 PYNATLSVHQLVENADECMVLDNEALYDICFRTLKLTTPSFGDLNHLISATMSGVTCCLR 241
Query: 125 FPGQLNSDLRKLAVNMVPFPRLHFFMPGFAPLTSRGSQQYRSLTVPELVQQMFDAKNMMA 184
FPGQLNSDLRKLAVN++PFPRLHFFM GFAPLTSRGSQQYR+LTVPEL QQM+DAKNMM
Sbjct: 242 FPGQLNSDLRKLAVNLIPFPRLHFFMVGFAPLTSRGSQQYRALTVPELTQQMWDAKNMMC 301
Query: 185 ACDPRHGKYLTVAAIFRGRMSMKEVDEQMLNIQNKNASYFVEWIPNNCKTAVCDIPPRGL 244
A DPRHG+YLT +A+FRG+MS KEVDEQM+N+QNKN+SYFVEWIPNN K++VCDIPP+GL
Sbjct: 302 AADPRHGRYLTASAMFRGKMSTKEVDEQMINVQNKNSSYFVEWIPNNVKSSVCDIPPKGL 361
Query: 245 KMAATFIGNTTAIQELFRRISDQFDSMYKRKAFLHWYLGEGMDEMEFTEAASNVLDLISE 304
KMA+TFIGN+T+IQE+FRR+S+QF +M++RKAFLHWY GEGMDEMEFTEA SN+ DL+SE
Sbjct: 362 KMASTFIGNSTSIQEMFRRVSEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVSE 421
Query: 305 YQQYQEAAVDDEGGEDDNEEGDGDA 329
YQQYQ+A D+EG +D EE +
Sbjct: 422 YQQYQDATADEEGEYEDEEEEEEYE 446
>gnl|CDD|227356 COG5023, COG5023, Tubulin [Cytoskeleton].
Length = 443
Score = 523 bits (1350), Expect = 0.0
Identities = 164/323 (50%), Positives = 226/323 (69%), Gaps = 4/323 (1%)
Query: 5 KEAESCDCLQGFQLTHSLGGGTGSGMGTLMISKIREEYPDRIMNTFSIVPSPKVSDTVVE 64
+EA+ CD LQGF L HSLGGGTGSG+G+L++ ++REEYP +I TFS+ P+PKVSD VVE
Sbjct: 122 READGCDGLQGFLLLHSLGGGTGSGLGSLLLERLREEYPKKIKLTFSVFPAPKVSDVVVE 181
Query: 65 PYNATLSIHQLVENTDETFCIDNEALYEICFRTLKLTTPTYGDLNHLVSAAMSGVTTCLR 124
PYN+ L++H+L+EN+D TF +DNEALY+IC R L++ P+Y DLN L+S MS VTT LR
Sbjct: 182 PYNSVLTLHRLLENSDCTFVVDNEALYDICRRNLRIQNPSYDDLNQLISTVMSSVTTSLR 241
Query: 125 FPGQLNSDLRKLAVNMVPFPRLHFFMPGFAPLTSRGSQQYRSLTVPELVQQMFDAKNMMA 184
FPG LN DLR + N+VP+PRLHF + + P TS GS + +V E+ Q+FD KN M
Sbjct: 242 FPGYLNVDLRSIQTNLVPYPRLHFPLVSYTPFTSDGSAAHEKNSVSEVTNQLFDPKNQMV 301
Query: 185 ACDPRHGKYLTVAAIFRGRMSMKEVDEQMLNIQNKNASYFVEWIPNNCKTAVCDIPP--- 241
+CDPR G+Y+ V +FRG + ++V + +Q+K FVEW P K A+C PP
Sbjct: 302 SCDPRKGRYMAVCLLFRGDVDPRDVSRAVTRVQSKRTIQFVEWCPTGFKVAICKRPPSEP 361
Query: 242 RGLKMAATFIGNTTAIQELFRRISDQFDSMYKRKAFLHWYLGEGMDEMEFTEAASNVLDL 301
+ ++ + NTT+I E F+RI DQFD M+K++AFLHWY+GEGM+E EF+EA +V DL
Sbjct: 362 AEVDVSGCMLSNTTSIAEAFKRIDDQFDLMFKKRAFLHWYVGEGMEEGEFSEAREDVADL 421
Query: 302 ISEYQQYQEAAVDDEGGEDDNEE 324
EY+ ++ + D+ ED+ E
Sbjct: 422 EEEYEAAEQDSYLDD-EEDEEEM 443
>gnl|CDD|100023 cd06059, Tubulin, The tubulin superfamily includes five distinct
families, the alpha-, beta-, gamma-, delta-, and
epsilon-tubulins and a sixth family (zeta-tubulin) which
is present only in kinetoplastid protozoa. The alpha-
and beta-tubulins are the major components of
microtubules, while gamma-tubulin plays a major role in
the nucleation of microtubule assembly. The delta- and
epsilon-tubulins are widespread but unlike the alpha,
beta, and gamma-tubulins they are not ubiquitous among
eukaryotes. The alpha/beta-tubulin heterodimer is the
structural subunit of microtubules. The alpha- and
beta-tubulins share 40% amino-acid sequence identity,
exist in several isotype forms, and undergo a variety of
posttranslational modifications. The structures of
alpha- and beta-tubulin are basically identical: each
monomer is formed by a core of two beta-sheets
surrounded by alpha-helices. The monomer structure is
very compact, but can be divided into three regions
based on function: the amino-terminal nucleotide-binding
region, an intermediate taxol-binding region and the
carboxy-terminal region which probably constitutes the
binding surface for motor proteins. Also included in
this group is the mitochondrial Misato/DML1 protein
family, involved in mitochondrial fusion and in
mitochondrial distribution and morphology.
Length = 382
Score = 407 bits (1048), Expect = e-142
Identities = 156/304 (51%), Positives = 209/304 (68%), Gaps = 3/304 (0%)
Query: 5 KEAESCDCLQGFQLTHSLGGGTGSGMGTLMISKIREEYPDRIMNTFSIVPSPKVSDTVVE 64
K+ E CD LQGFQ+THSLGGGTGSG+G+L++ + +EYP ++NTFSI PSP+ S VVE
Sbjct: 81 KQVEKCDSLQGFQITHSLGGGTGSGLGSLLLELLSDEYPKILINTFSIFPSPQGSSNVVE 140
Query: 65 PYNATLSIHQLVENTDETFCIDNEALYEICFRTLKLTTPTYGDLNHLVSAAMSGVTTCLR 124
PYN+ LS++ L+EN+D DNEALY I R L + P++ DLN++++ +S +T LR
Sbjct: 141 PYNSILSLNHLLENSDSVILFDNEALYNILTRQLDIDEPSFDDLNNIIAQIISSITASLR 200
Query: 125 FPGQLNSDLRKLAVNMVPFPRLHFFMPGFAPLTSRGSQQYRSLTVPELVQQMFDAKNMMA 184
FPG LN DLRKLA N+VPFPRLHF P FAPL S SQ L + +++ ++F+ N
Sbjct: 201 FPGYLNFDLRKLATNLVPFPRLHFLTPSFAPLISYDSQTTEKLNLLQIINELFNNDNSFF 260
Query: 185 ACDPRHGKYLTVAAIFRGRMSMKEVDEQMLNIQNKNASYFVEWIPNNCKTAVCDIPPRG- 243
+CDP G+YL A IFRG + E+ E + ++NK WIP+ K + C PPR
Sbjct: 261 SCDPTKGRYLAAALIFRGDVFQSEIQEAINKLKNKL--NIQSWIPDGFKVSNCKKPPRAE 318
Query: 244 LKMAATFIGNTTAIQELFRRISDQFDSMYKRKAFLHWYLGEGMDEMEFTEAASNVLDLIS 303
L +A F+ N+T+I E R+ ++FD +YKRKAFLHWYLGEGMDEMEFTEA S++ DLI
Sbjct: 319 LGKSALFLSNSTSIGESLERLIEKFDKLYKRKAFLHWYLGEGMDEMEFTEAESSLEDLIQ 378
Query: 304 EYQQ 307
YQ+
Sbjct: 379 SYQE 382
>gnl|CDD|100014 cd00286, Tubulin_FtsZ, Tubulin/FtsZ: Family includes tubulin
alpha-, beta-, gamma-, delta-, and epsilon-tubulins as
well as FtsZ, all of which are involved in polymer
formation. Tubulin is the major component of
microtubules, but also exists as a heterodimer and as a
curved oligomer. Microtubules exist in all eukaryotic
cells and are responsible for many functions, including
cellular transport, cell motility, and mitosis. FtsZ
forms a ring-shaped septum at the site of bacterial cell
division, which is required for constriction of cell
membrane and cell envelope to yield two daughter cells.
FtsZ can polymerize into tubes, sheets, and rings in
vitro and is ubiquitous in eubacteria, archaea, and
chloroplasts.
Length = 328
Score = 330 bits (848), Expect = e-113
Identities = 116/252 (46%), Positives = 159/252 (63%), Gaps = 4/252 (1%)
Query: 4 VKEAESCDCLQGFQLTHSLGGGTGSGMGTLMISKIREEYPDRIMNTFSIVPSPKVSDTVV 63
KEAE CD LQGF +THSLGGGTGSG+G ++ ++++EYP R+ TFSI+P P +V
Sbjct: 80 RKEAEECDSLQGFFITHSLGGGTGSGLGPVLAERLKDEYPKRLKITFSILPGPDEG-VIV 138
Query: 64 EPYNATLSIHQLVENTDETFCIDNEALYEICFRTLKLTTPTYGDLNHLVSAAMSGVTTCL 123
PYN+ L++H L E++D IDNEAL++IC R L + PT+ +N L++ A+S +TT L
Sbjct: 139 RPYNSILTLHTLTEHSDCLVVIDNEALFDICPRPLHIDKPTFDHINELLATALSSLTTPL 198
Query: 124 RFPGQLNSDLRKLAVNMVPFPRLHFFMPGFAPLTSRGSQQYRSLTVPELVQQMFDAKNMM 183
RF G LN DLR+L+ N+VPFPRLHF M G+APL S GS +L V ELV+Q +KN M
Sbjct: 199 RFDGSLNVDLRELSENLVPFPRLHFLMVGYAPLDSEGSATPTTLRVAELVRQALRSKNQM 258
Query: 184 AACDPRHGKYLTVAAIFRGRMSMKEVDEQMLNIQNKNASYFVEWIPNNCKTAVCDIPPR- 242
CDP HG Y+ + RG +S EV E + + + + W P K V PP
Sbjct: 259 VVCDPTHGGYIAALLLVRGPVSPSEVREGIARVAPRTSHL--SWSPPGIKVGVSPTPPAS 316
Query: 243 GLKMAATFIGNT 254
K++A + N+
Sbjct: 317 EHKVSALLLSNS 328
>gnl|CDD|100015 cd02186, alpha_tubulin, The tubulin superfamily includes five
distinct families, the alpha-, beta-, gamma-, delta-,
and epsilon-tubulins and a sixth family (zeta-tubulin)
which is present only in kinetoplastid protozoa. The
alpha- and beta-tubulins are the major components of
microtubules, while gamma-tubulin plays a major role in
the nucleation of microtubule assembly. The delta- and
epsilon-tubulins are widespread but unlike the alpha,
beta, and gamma-tubulins they are not ubiquitous among
eukaryotes. The alpha/beta-tubulin heterodimer is the
structural subunit of microtubules. The alpha- and
beta-tubulins share 40% amino-acid sequence identity,
exist in several isotype forms, and undergo a variety of
posttranslational modifications. The structures of
alpha- and beta-tubulin are basically identical: each
monomer is formed by a core of two beta-sheets
surrounded by alpha-helices. The monomer structure is
very compact, but can be divided into three regions
based on function: the amino-terminal nucleotide-binding
region, an intermediate taxol-binding region and the
carboxy-terminal region which probably constitutes the
binding surface for motor proteins.
Length = 434
Score = 332 bits (854), Expect = e-112
Identities = 128/311 (41%), Positives = 193/311 (62%), Gaps = 8/311 (2%)
Query: 5 KEAESCDCLQGFQLTHSLGGGTGSGMGTLMISKIREEYPDRIMNTFSIVPSPKVSDTVVE 64
K A++C LQGF + HS GGGTGSG G+L++ ++ +Y + F++ PSP+VS VVE
Sbjct: 123 KLADNCTGLQGFLIFHSFGGGTGSGFGSLLLERLSVDYGKKSKLEFTVYPSPQVSTAVVE 182
Query: 65 PYNATLSIHQLVENTDETFCIDNEALYEICFRTLKLTTPTYGDLNHLVSAAMSGVTTCLR 124
PYN+ L+ H L+E++D +F +DNEA+Y+IC R L + PTY +LN L++ +S +T LR
Sbjct: 183 PYNSVLTTHSLLEHSDCSFMVDNEAIYDICRRNLDIERPTYTNLNRLIAQVVSSITASLR 242
Query: 125 FPGQLNSDLRKLAVNMVPFPRLHFFMPGFAPLTSRGSQQYRSLTVPELVQQMFDAKNMMA 184
F G LN DL + N+VP+PR+HF + +AP+ S + L+V E+ F+ N M
Sbjct: 243 FDGALNVDLNEFQTNLVPYPRIHFPLVSYAPIISAEKAYHEQLSVAEITNACFEPANQMV 302
Query: 185 ACDPRHGKYLTVAAIFRGRMSMKEVDEQMLNIQNKNASYFVEWIPNNCKTAVCDIPPR-- 242
CDPRHGKY+ ++RG + K+V+ + I+ K FV+W P K + PP
Sbjct: 303 KCDPRHGKYMACCLLYRGDVVPKDVNAAVATIKTKRTIQFVDWCPTGFKVGINYQPPTVV 362
Query: 243 -GLKMA-----ATFIGNTTAIQELFRRISDQFDSMYKRKAFLHWYLGEGMDEMEFTEAAS 296
G +A + NTTAI E + R+ +FD MY ++AF+HWY+GEGM+E EF+EA
Sbjct: 363 PGGDLAKVQRAVCMLSNTTAIAEAWSRLDHKFDLMYSKRAFVHWYVGEGMEEGEFSEARE 422
Query: 297 NVLDLISEYQQ 307
++ L +Y++
Sbjct: 423 DLAALEKDYEE 433
>gnl|CDD|185562 PTZ00335, PTZ00335, tubulin alpha chain; Provisional.
Length = 448
Score = 321 bits (824), Expect = e-108
Identities = 135/328 (41%), Positives = 200/328 (60%), Gaps = 11/328 (3%)
Query: 5 KEAESCDCLQGFQLTHSLGGGTGSGMGTLMISKIREEYPDRIMNTFSIVPSPKVSDTVVE 64
K A++C LQGF + H++GGGTGSG+G+L++ ++ +Y + F+I PSP+VS VVE
Sbjct: 124 KLADNCTGLQGFLVFHAVGGGTGSGLGSLLLERLSVDYGKKSKLGFTIYPSPQVSTAVVE 183
Query: 65 PYNATLSIHQLVENTDETFCIDNEALYEICFRTLKLTTPTYGDLNHLVSAAMSGVTTCLR 124
PYN+ LS H L+E+TD +DNEA+Y+IC R L + PTY +LN L++ +S +T LR
Sbjct: 184 PYNSVLSTHSLLEHTDVAVMLDNEAIYDICRRNLDIERPTYTNLNRLIAQVISSLTASLR 243
Query: 125 FPGQLNSDLRKLAVNMVPFPRLHFFMPGFAPLTSRGSQQYRSLTVPELVQQMFDAKNMMA 184
F G LN DL + N+VP+PR+HF + +AP+ S + L+V E+ F+ NMMA
Sbjct: 244 FDGALNVDLTEFQTNLVPYPRIHFMLSSYAPIISAEKAYHEQLSVAEITNSAFEPANMMA 303
Query: 185 ACDPRHGKYLTVAAIFRGRMSMKEVDEQMLNIQNKNASYFVEWIPNNCKTAV-----CDI 239
CDPRHGKY+ ++RG + K+V+ + I+ K FV+W P K + +
Sbjct: 304 KCDPRHGKYMACCLMYRGDVVPKDVNAAIATIKTKRTIQFVDWCPTGFKCGINYQPPTVV 363
Query: 240 PPRGL---KMAATFIGNTTAIQELFRRISDQFDSMYKRKAFLHWYLGEGMDEMEFTEAAS 296
P L + A I N+TAI E+F RI +FD MY ++AF+HWY+GEGM+E EF+EA
Sbjct: 364 PGGDLAKVQRAVCMISNSTAIAEVFSRIDHKFDLMYAKRAFVHWYVGEGMEEGEFSEARE 423
Query: 297 NVLDLISEYQQYQEAAVDDEGGEDDNEE 324
DL + + Y+E + E + +
Sbjct: 424 ---DLAALEKDYEEVGAESADEEGEEDV 448
>gnl|CDD|177802 PLN00221, PLN00221, tubulin alpha chain; Provisional.
Length = 450
Score = 312 bits (800), Expect = e-104
Identities = 133/330 (40%), Positives = 205/330 (62%), Gaps = 13/330 (3%)
Query: 5 KEAESCDCLQGFQLTHSLGGGTGSGMGTLMISKIREEYPDRIMNTFSIVPSPKVSDTVVE 64
K A++C LQGF + +++GGGTGSG+G+L++ ++ +Y + F++ PSP+VS VVE
Sbjct: 124 KLADNCTGLQGFLVFNAVGGGTGSGLGSLLLERLSVDYGKKSKLGFTVYPSPQVSTAVVE 183
Query: 65 PYNATLSIHQLVENTDETFCIDNEALYEICFRTLKLTTPTYGDLNHLVSAAMSGVTTCLR 124
PYN+ LS H L+E+TD +DNEA+Y+IC R+L + PTY +LN L+S +S +T LR
Sbjct: 184 PYNSVLSTHSLLEHTDVAVLLDNEAIYDICRRSLDIERPTYTNLNRLISQVISSLTASLR 243
Query: 125 FPGQLNSDLRKLAVNMVPFPRLHFFMPGFAPLTSRGSQQYRSLTVPELVQQMFDAKNMMA 184
F G LN D+ + N+VP+PR+HF + +AP+ S + L+V E+ F+ +MMA
Sbjct: 244 FDGALNVDITEFQTNLVPYPRIHFMLSSYAPVISAEKAYHEQLSVAEITNSAFEPASMMA 303
Query: 185 ACDPRHGKYLTVAAIFRGRMSMKEVDEQMLNIQNKNASYFVEWIPNNCKTAVCDIPPR-- 242
CDPRHGKY+ ++RG + K+V+ + I+ K FV+W P K + PP
Sbjct: 304 KCDPRHGKYMACCLMYRGDVVPKDVNAAVATIKTKRTIQFVDWCPTGFKCGINYQPPTVV 363
Query: 243 ------GLKMAATFIGNTTAIQELFRRISDQFDSMYKRKAFLHWYLGEGMDEMEFTEAAS 296
++ A I N+TA+ E+F RI +FD MY ++AF+HWY+GEGM+E EF+EA
Sbjct: 364 PGGDLAKVQRAVCMISNSTAVAEVFSRIDHKFDLMYAKRAFVHWYVGEGMEEGEFSEARE 423
Query: 297 NVLDLISEYQQYQEAAVDDEGGEDDNEEGD 326
++ L +Y++ V E E + +EG+
Sbjct: 424 DLAALEKDYEE-----VGAESAEGEGDEGE 448
>gnl|CDD|100017 cd02188, gamma_tubulin, Gamma-tubulin is a ubiquitous
phylogenetically conserved member of tubulin
superfamily. Gamma is a low abundance protein present
within the cells in both various types of
microtubule-organizing centers and cytoplasmic protein
complexes. Gamma-tubulin recruits the
alpha/beta-tubulin dimers that form the minus ends of
microtubules and is thought to be involved in
microtubule nucleation and capping.
Length = 431
Score = 263 bits (675), Expect = 1e-85
Identities = 111/310 (35%), Positives = 179/310 (57%), Gaps = 9/310 (2%)
Query: 5 KEAESCDCLQGFQLTHSLGGGTGSGMGTLMISKIREEYPDRIMNTFSIVP-SPKVSDTVV 63
+EA+ D L+GF L HS+ GGTGSGMG+ ++ ++ + YP +++ T+S+ P + SD VV
Sbjct: 122 READGSDSLEGFVLCHSIAGGTGSGMGSYLLERLNDRYPKKLIQTYSVFPNQDESSDVVV 181
Query: 64 EPYNATLSIHQLVENTDETFCIDNEALYEICFRTLKLTTPTYGDLNHLVSAAMSGVTTCL 123
+PYN+ L++ +L+ N D +DN AL I L + PT+ +N LVS MS TT L
Sbjct: 182 QPYNSILTLKRLILNADCVVVLDNTALNRIATDRLHIQNPTFDQINSLVSTVMSASTTTL 241
Query: 124 RFPGQLNSDLRKLAVNMVPFPRLHFFMPGFAPLTS-RGSQQYRSLTVPELVQQMFDAKNM 182
R+PG +N+DL L +++P PRLHF M + PLTS + + R TV ++++++ KN+
Sbjct: 242 RYPGYMNNDLISLIASLIPTPRLHFLMTSYTPLTSDQIAASVRKTTVLDVMRRLLQPKNI 301
Query: 183 MAACDP-RHGKYLTVAAIFRGRMSMKEVDEQMLNIQNKNASYFVEWIPNNCKTAVCDIPP 241
M + ++G Y+++ I +G + +V + + I+ + + F+ W P + + A+ P
Sbjct: 302 MVSTATRKNGCYISILNIIQGEVDPTQVHKSLQRIRERRLANFIPWGPASIQVALSKKSP 361
Query: 242 ---RGLKMAATFIGNTTAIQELFRRISDQFDSMYKRKAFLHWYLGEGMDEM---EFTEAA 295
+++ + N T+I LF RI QFD + KR+AFL Y E M EF E+
Sbjct: 362 YVPTAHRVSGLMLANHTSIASLFERILKQFDKLRKRRAFLDNYRKEDMFSDNLDEFDESR 421
Query: 296 SNVLDLISEY 305
V LI EY
Sbjct: 422 EVVQSLIEEY 431
>gnl|CDD|100019 cd02190, epsilon_tubulin, The tubulin superfamily includes five
distinct families, the alpha-, beta-, gamma-, delta-,
and epsilon-tubulins and a sixth family (zeta-tubulin)
which is present only in kinetoplastid protozoa. The
epsilon-tubulins which are widespread but not ubiquitous
among eukaryotes play a role in basal body/centriole
morphogenesis.
Length = 379
Score = 237 bits (608), Expect = 4e-76
Identities = 102/303 (33%), Positives = 164/303 (54%), Gaps = 15/303 (4%)
Query: 5 KEAESCDCLQGFQLTHSLGGGTGSGMGTLMISKIREEYPDRIMNTFSIVPSPKVSDTVVE 64
K AE CD LQ F + HSLGGGTGSG+GT ++ + +E+P+ S+ PS D +
Sbjct: 91 KAAEKCDSLQSFFILHSLGGGTGSGLGTYVLELLADEFPEVYRFVTSVYPS-ADDDVITS 149
Query: 65 PYNATLSIHQLVENTDETFCIDNEALYEICFRTLKLTTPTYGDLNHLVSAAMSGVTTCLR 124
PYN+ L++ +L+E+ D I+N+AL + F +N +V+ + +T+ +R
Sbjct: 150 PYNSVLALRELIEHADCVLPIENQAL--VPFD----------AMNSIVANLLLNLTSSMR 197
Query: 125 FPGQLNSDLRKLAVNMVPFPRLHFFMPGFAPLTSRGSQQYRSLTVPELVQQMFDAKNMMA 184
F G LN DL ++ +N+VPFPRLHF + +PL + ++ F + +
Sbjct: 198 FEGSLNVDLNEITMNLVPFPRLHFLVSSLSPLYPLADVNVPPRRLDQMFSDAFSRNHQLI 257
Query: 185 ACDPRHGKYLTVAAIFRGRMSMKEVDEQMLNIQNKNASYFVEWIPNNCKTAVCDIPPRGL 244
DP+HG YL A + RG +S+ ++ + ++ K FV+W K +C +PP G
Sbjct: 258 RADPKHGLYLACALLVRGNVSVSDLRRNIERLKPK--LKFVKWNQEGWKIGLCSVPPVGH 315
Query: 245 KMAATFIGNTTAIQELFRRISDQFDSMYKRKAFLHWYLGEGMDEMEFTEAASNVLDLISE 304
+ + N T I+ F + ++F +YKRKA LH Y GM++ +FTEA ++ +LI E
Sbjct: 316 SYSLLCLANNTCIKGTFTELKERFMKLYKRKAHLHHYTQVGMEQGDFTEALESISNLIDE 375
Query: 305 YQQ 307
Y
Sbjct: 376 YDY 378
>gnl|CDD|217812 pfam03953, Tubulin_C, Tubulin C-terminal domain. This family
includes the tubulin alpha, beta and gamma chains.
Members of this family are involved in polymer
formation. Tubulins are GTPases. FtsZ can polymerise
into tubes, sheets, and rings in vitro and is ubiquitous
in eubacteria and archaea. Tubulin is the major
component of microtubules. (The FtsZ GTPases have been
split into their won family).
Length = 126
Score = 218 bits (559), Expect = 3e-72
Identities = 71/126 (56%), Positives = 91/126 (72%), Gaps = 3/126 (2%)
Query: 144 PRLHFFMPGFAPLTSRGSQQYRSLTVPELVQQMFDAKNMMAACDPRHGKYLTVAAIFRGR 203
PRLHF M G+APLTS+G +R +V EL +Q+FD KNMM ACDPRHGKYL+ A + RG
Sbjct: 1 PRLHFLMTGYAPLTSKGKASHRKTSVLELTRQLFDPKNMMVACDPRHGKYLSCALLIRGD 60
Query: 204 MSMKEVDEQMLNIQNKNASYFVEWIPNNCKTAVCDIPPRGLKM---AATFIGNTTAIQEL 260
+S KEV + + IQ KN++ FVEWIPN+ K A+CD+PP GL + + NTTAIQEL
Sbjct: 61 VSPKEVHKAIQRIQEKNSANFVEWIPNSIKVAICDVPPYGLPGSDVSGLMLANTTAIQEL 120
Query: 261 FRRISD 266
F+RI +
Sbjct: 121 FKRILE 126
>gnl|CDD|240395 PTZ00387, PTZ00387, epsilon tubulin; Provisional.
Length = 465
Score = 223 bits (569), Expect = 3e-69
Identities = 101/335 (30%), Positives = 163/335 (48%), Gaps = 31/335 (9%)
Query: 5 KEAESCDCLQGFQLTHSLGGGTGSGMGTLMISKIREEYPDRIMNTFSIVPSPKVSDTVVE 64
++ E CD LQ F L HSLGGGTGSG+GT ++ + +E+P + PS V D +
Sbjct: 123 RQVEQCDSLQSFFLMHSLGGGTGSGLGTRILGMLEDEFPHVFRFCPVVFPS-AVDDVITS 181
Query: 65 PYNATLSIHQLVENTDETFCIDNEALYEICFRTLKL---------------------TTP 103
PYN+ ++ +L+E+ D +DN+AL I L P
Sbjct: 182 PYNSFFALRELIEHADCVLPLDNDALANIADSALSRKKKKLAKGNIKRGPQPHKYSVAKP 241
Query: 104 T------YGDLNHLVSAAMSGVTTCLRFPGQLNSDLRKLAVNMVPFPRLHFFMPGFAPLT 157
T Y +N++V+ +S +T+ +RF G LN D+ ++ N+VP+PRLHF APL
Sbjct: 242 TETKKLPYDKMNNIVAQLLSNLTSSMRFEGSLNVDINEITTNLVPYPRLHFLTSSIAPLV 301
Query: 158 SRGSQQYRSLTVPELVQQMFDAKNMMAACDPRHGKYLTVAAIFRGRMSMKEVDEQMLNIQ 217
S + ++ + D + M A P GKYL A I RG ++ +V +L +
Sbjct: 302 SLKDVAVGPRRLDQMFKDCLDPDHQMVAATPEAGKYLATALIVRGPQNVSDVTRNILRL- 360
Query: 218 NKNASYFVEWIPNNCKTAVCDIPPRGLKMAATFIGNTTAIQELFRRISDQFDSMYKRKAF 277
K + W + KT +C++ P G + + N I+ F + ++F+ +YKRK+
Sbjct: 361 -KEQLNMIYWNEDGFKTGLCNVSPLGQPYSLLCLANNCCIRNKFESMLERFNKLYKRKSH 419
Query: 278 LHWYLGEGMDEMEFTEAASNVLDLISEYQQYQEAA 312
+H Y E +++ F E + +LI +Y Q A
Sbjct: 420 VHHYT-EYLEQAYFDETLETIQNLIDDYAYLQTAE 453
>gnl|CDD|215108 PLN00222, PLN00222, tubulin gamma chain; Provisional.
Length = 454
Score = 217 bits (553), Expect = 4e-67
Identities = 110/331 (33%), Positives = 179/331 (54%), Gaps = 14/331 (4%)
Query: 5 KEAESCDCLQGFQLTHSLGGGTGSGMGTLMISKIREEYPDRIMNTFSIVPS-PKVSDTVV 63
+EA+ D L+GF L HS+ GGTGSGMG+ ++ + + Y +++ T+S+ P+ + SD VV
Sbjct: 124 READGSDSLEGFVLCHSIAGGTGSGMGSYLLEALNDRYSKKLVQTYSVFPNQMETSDVVV 183
Query: 64 EPYNATLSIHQLVENTDETFCIDNEALYEICFRTLKLTTPTYGDLNHLVSAAMSGVTTCL 123
+PYN+ L++ +L N D +DN AL I L L PT+ N LVS MS TT L
Sbjct: 184 QPYNSLLTLKRLTLNADCVVVLDNTALNRIAVDRLHLENPTFAQTNSLVSTVMSASTTTL 243
Query: 124 RFPGQLNSDLRKLAVNMVPFPRLHFFMPGFAPL-TSRGSQQYRSLTVPELVQQMFDAKNM 182
R+PG +N+DL L +++P PR HF M G+ PL R + R TV ++++++ KN+
Sbjct: 244 RYPGYMNNDLVGLLASLIPTPRCHFLMTGYTPLTVERQANVIRKTTVLDVMRRLLQTKNI 303
Query: 183 MAACDPR-----HGKYLTVAAIFRGRMSMKEVDEQMLNIQNKNASYFVEWIPNNCKTAVC 237
M + R KY+++ I +G + +V + + I+ + + F+EW P + + A+
Sbjct: 304 MVSSYARTKEASQAKYISILNIIQGEVDPTQVHKSLQRIRERKLANFIEWGPASIQVALS 363
Query: 238 DIPP---RGLKMAATFIGNTTAIQELFRRISDQFDSMYKRKAFLHWYLGEGM----DEME 290
P +++ + N T+I+ LF + Q+D + K++AFL Y M D E
Sbjct: 364 RKSPYVQTAHRVSGLMLANHTSIRHLFSKCLSQYDKLRKKQAFLDNYRKFPMFADNDLSE 423
Query: 291 FTEAASNVLDLISEYQQYQEAAVDDEGGEDD 321
F E+ V L+ EY+ + G ED
Sbjct: 424 FDESREIVESLVDEYKACESPDYIKWGMEDP 454
>gnl|CDD|214867 smart00864, Tubulin, Tubulin/FtsZ family, GTPase domain. This
domain is found in all tubulin chains, as well as the
bacterial FtsZ family of proteins. These proteins are
involved in polymer formation. Tubulin is the major
component of microtubules, while FtsZ is the
polymer-forming protein of bacterial cell division, it
is part of a ring in the middle of the dividing cell
that is required for constriction of cell membrane and
cell envelope to yield two daughter cells. FtsZ and
tubulin are GTPases, this entry is the GTPase domain.
FtsZ can polymerise into tubes, sheets, and rings in
vitro and is ubiquitous in bacteria and archaea.
Length = 192
Score = 150 bits (382), Expect = 1e-44
Identities = 50/123 (40%), Positives = 72/123 (58%), Gaps = 8/123 (6%)
Query: 5 KEAESCDCLQGFQLTHSLGGGTGSGMGTLMISKIREEYPDRIMNTFSIVPSPKVSDTVVE 64
+E E D G +T +GGGTG+G + I++I +EY T ++V P + VV
Sbjct: 78 EELEGAD---GVFITAGMGGGTGTGAAPV-IAEIAKEYGIL---TVAVVTKPFSFEGVVR 130
Query: 65 PYNATLSIHQLVENTDETFCIDNEALYEICFRTLKLTTPTYGDLNHLVSAAMSGVTTCLR 124
PYNA L + +L E+ D IDN+AL +IC R L L P + D N L++ A+SG+T +R
Sbjct: 131 PYNAELGLEELREHVDSLIVIDNDALLDICGRKLPL-RPAFKDANDLLAQAVSGITDLIR 189
Query: 125 FPG 127
FPG
Sbjct: 190 FPG 192
>gnl|CDD|100018 cd02189, delta_tubulin, The tubulin superfamily includes five
distinct families, the alpha-, beta-, gamma-, delta-,
and epsilon-tubulins and a sixth family (zeta-tubulin)
which is present only in kinetoplastid protozoa. The
alpha- and beta-tubulins are the major components of
microtubules, while gamma-tubulin plays a major role in
the nucleation of microtubule assembly. The delta- and
epsilon-tubulins are widespread but unlike the alpha,
beta, and gamma-tubulins they are not ubiquitous among
eukaryotes. Delta-tubulin plays an essential role in
forming the triplet microtubules of centrioles and basal
bodies.
Length = 446
Score = 147 bits (372), Expect = 1e-40
Identities = 73/340 (21%), Positives = 135/340 (39%), Gaps = 50/340 (14%)
Query: 5 KEAESCDCLQGFQLTHSLGGGTGSGMGTLMISKIREEYPDR-IMNTFSIVPSP-KVSDTV 62
KE E CD +GF + HSL GGTGSG+G+ + +R+EYP+ ++N IV P + +
Sbjct: 118 KEVEKCDSFEGFLVLHSLAGGTGSGLGSRVTELLRDEYPESLLLN---IVVWPYTTGEVI 174
Query: 63 VEPYNATLSIHQLVENTDETFCIDNEALYEICFRTLKLTTPTYGDLNHLVSAAMSGV--- 119
V+ YN L++ L E++D ++N+ ++ IC + L + D+N +++ ++ +
Sbjct: 175 VQNYNTVLTLAHLYESSDAIILLENDDIHRICSKLRNLKNVSLSDINKVIAHQLASLLQP 234
Query: 120 --TTCLRFPGQLNSDLRKLAVNM-----VPFPRLHFFMPGFAPLTSRGSQQYRSLTVPEL 172
+ + +N P P P S + + + L
Sbjct: 235 SLDSTGSNGA--LAGRSTNPLNDLVEDLCPHPAYKLLTIRSLPQMPEKSLAFSTFSWSAL 292
Query: 173 VQ---QMFDAKNMMAACDPRHG-------------------KYLTVAAIFRGRMSMKEVD 210
++ QM A + M K L I RG+ +
Sbjct: 293 LKRLHQMLIAGSFMEEGIDWTVRPEGSAASLLSGNKSTHFNKSLANLLILRGKDVTSADE 352
Query: 211 EQMLNIQNKNASYFVEWIPNNCKTAVCDIPPRGL----KMAATFIGNTTAIQELFRRISD 266
+ ++ +V W P + R K + T I L I +
Sbjct: 353 RKF-----RDPLLYVNWSP-SPVRFSISSHKRSFSKYEKSVTLVSNSQTIIDPLD-NILE 405
Query: 267 QFDSMYKRKAFLHWYLGEGMDEMEFTEAASNVLDLISEYQ 306
+ +M+ A+LH Y G++E +F +A + + +I+ Y+
Sbjct: 406 KAWNMFASGAYLHQYEKYGLEEEDFLDAFATLEQIIASYK 445
>gnl|CDD|215710 pfam00091, Tubulin, Tubulin/FtsZ family, GTPase domain. This
family includes the tubulin alpha, beta and gamma
chains, as well as the bacterial FtsZ family of
proteins. Members of this family are involved in polymer
formation. FtsZ is the polymer-forming protein of
bacterial cell division. It is part of a ring in the
middle of the dividing cell that is required for
constriction of cell membrane and cell envelope to yield
two daughter cells. FtsZ and tubulin are GTPases. FtsZ
can polymerise into tubes, sheets, and rings in vitro
and is ubiquitous in eubacteria and archaea. Tubulin is
the major component of microtubules.
Length = 210
Score = 127 bits (321), Expect = 2e-35
Identities = 43/103 (41%), Positives = 62/103 (60%), Gaps = 3/103 (2%)
Query: 5 KEAESCDCLQGFQLTHSLGGGTGSGMGTLMISKIREEYPDRIMNTFSIVPSPKVSDTVVE 64
KE E CD L GF +T LGGGTGSG ++ ++E Y + T ++V P S+ VV
Sbjct: 111 KELEKCDGLDGFFITAGLGGGTGSGAAPVIAEILKELY-GAL--TVAVVTFPFTSEGVVR 167
Query: 65 PYNATLSIHQLVENTDETFCIDNEALYEICFRTLKLTTPTYGD 107
PYNA L + +L+E++D IDN+AL EIC L + +P + +
Sbjct: 168 PYNAILGLKELIEHSDSVIVIDNDALLEICDNQLDIKSPAFKN 210
>gnl|CDD|214868 smart00865, Tubulin_C, Tubulin/FtsZ family, C-terminal domain.
This domain is found in the tubulin alpha, beta and
gamma chains, as well as the bacterial FtsZ family of
proteins. These proteins are GTPases and are involved in
polymer formation. Tubulin is the major component of
microtubules, while FtsZ is the polymer-forming protein
of bacterial cell division, it is part of a ring in the
middle of the dividing cell that is required for
constriction of cell membrane and cell envelope to yield
two daughter cells. FtsZ can polymerise into tubes,
sheets, and rings in vitro and is ubiquitous in bacteria
and archaea. This is the C-terminal domain.
Length = 120
Score = 100 bits (252), Expect = 2e-26
Identities = 33/142 (23%), Positives = 54/142 (38%), Gaps = 26/142 (18%)
Query: 129 LNSDLRKLAVNMVPFPRLHFFMPGFAPLTSRGSQQYRSLTVPE--LVQQMFDAKNMMAAC 186
+N D + MVP F M G P + + R+L E + + + N+M A
Sbjct: 1 INVDFADVKTVMVPMG---FAMMGIGPASG----ENRALEAAELAISSPLLEDSNIMGAK 53
Query: 187 DPRHGKYLTVAAIFRGRMSMKEVDEQMLNIQNKNAS-YFVEWIPNNCKTAVCDIPPRGLK 245
+T +++KEV+E M I+ K F+ W P + L
Sbjct: 54 GVLV--NITGGP----DLTLKEVNEAMERIREKADPDAFIIWGPVIDEE---------LG 98
Query: 246 MAATFIGN-TTAIQELFRRISD 266
+ T I LF+R+S+
Sbjct: 99 GDEIRVTVIATGIGSLFKRLSE 120
>gnl|CDD|100024 cd06060, misato, Human Misato shows similarity with Tubulin/FtsZ
family of GTPases and is localized to the the outer
membrane of mitochondria. It has a role in mitochondrial
fusion and in mitochondrial distribution and morphology.
Mutations in its Drosophila homolog (misato) lead to
irregular chromosome segregation during mitosis.
Deletion of the budding yeast homolog DML1 is lethal and
unregulate expression of DML1 leads to mitochondrial
dispersion and abnormalities in cell morphology. The
Misato/DML1 protein family is conserved from yeast to
human, but its exact function is still unknown.
Length = 493
Score = 46.6 bits (111), Expect = 9e-06
Identities = 23/78 (29%), Positives = 35/78 (44%), Gaps = 5/78 (6%)
Query: 7 AESCDCLQGFQLTHSLGGGTGSGMGTLMISKIREEYPDRIMNTFSIVP---SPKVSDT-V 62
E CD LQGFQ+ L G SG+G + +++EY + + P SD
Sbjct: 145 VEECDYLQGFQVLCDLHDGF-SGVGAKCLEHLQDEYGKASLLFPGLPPVIPPDASSDKNS 203
Query: 63 VEPYNATLSIHQLVENTD 80
+ N L + QL E++
Sbjct: 204 IRVLNTALGLAQLSEHSS 221
>gnl|CDD|100022 cd02202, FtsZ_type2, FtsZ is a GTPase that is similar to the
eukaryotic tubulins and is essential for cell division
in prokaryotes. FtsZ is capable of polymerizing in a
GTP-driven process into structures similar to those
formed by tubulin. FtsZ forms a ring-shaped septum at
the site of bacterial cell division, which is required
for constriction of cell membrane and cell envelope to
yield two daughter cells.
Length = 349
Score = 45.4 bits (108), Expect = 2e-05
Identities = 23/93 (24%), Positives = 40/93 (43%), Gaps = 4/93 (4%)
Query: 1 MGSVKEAESCDCLQGFQLTHSLGGGTGSGMGTLMISKIREEYPDRIMNTFSIVPSPKVSD 60
M ++ + + D + LGGGTGSG G +++K +E + + ++P+ +
Sbjct: 87 MRAIDDRGTSD-ADAILVIAGLGGGTGSG-GAPVLAKELKERYEEPVYALGVLPAR--EE 142
Query: 61 TVVEPYNATLSIHQLVENTDETFCIDNEALYEI 93
NA S+ L E D DN+A
Sbjct: 143 GERYSANAARSLDALSEEADAIILFDNDAWKRK 175
>gnl|CDD|100020 cd02191, FtsZ, FtsZ is a GTPase that is similar to the eukaryotic
tubulins and is essential for cell division in
prokaryotes. FtsZ is capable of polymerizing in a
GTP-driven process into structures similar to those
formed by tubulin. FtsZ forms a ring-shaped septum at
the site of bacterial cell division, which is required
for constriction of cell membrane and cell envelope to
yield two daughter cells.
Length = 303
Score = 41.8 bits (98), Expect = 3e-04
Identities = 28/118 (23%), Positives = 51/118 (43%), Gaps = 8/118 (6%)
Query: 16 FQLTHSLGGGTGSGMGTLMISKIREEYPDRIMNTFSIVPSPKVSDTVVEPYNATLSIHQL 75
+T LGGGTG+G G ++++ + T ++V P + + NA L
Sbjct: 88 VFITAGLGGGTGTG-GAPVVAEHLKRIG---TLTVAVVTLPFSDEGGIRMLNAAEGFQTL 143
Query: 76 VENTDETFCIDNEALYEIC-FRTLKLTTPTYGDLNHLVSAAMSGVTTCLRFPGQLNSD 132
V D I NE L +I +L+ + + ++ A+ G+ + G++N D
Sbjct: 144 VREVDNLMVIPNEKLRQIGEKASLEG---AFDHADEVLVRAVGGLFGAIEIEGEINVD 198
>gnl|CDD|223284 COG0206, FtsZ, Cell division GTPase [Cell division and chromosome
partitioning].
Length = 338
Score = 40.3 bits (95), Expect = 8e-04
Identities = 20/76 (26%), Positives = 34/76 (44%), Gaps = 4/76 (5%)
Query: 18 LTHSLGGGTGSGMGTLMISKIREEYPDRIMNTFSIVPSPKVSDTVVEPYNATLSIHQLVE 77
+T +GGGTG+G ++++I +E + +P +E NA I +L E
Sbjct: 101 VTAGMGGGTGTG-AAPVVAEIAKEL-GALTVAVVTLPFSFEGSPRME--NAEEGIEELRE 156
Query: 78 NTDETFCIDNEALYEI 93
D I N+ L +
Sbjct: 157 VVDTLIVIPNDKLLKG 172
>gnl|CDD|225258 COG2384, COG2384, Predicted SAM-dependent methyltransferase
[General function prediction only].
Length = 226
Score = 39.2 bits (92), Expect = 0.001
Identities = 20/88 (22%), Positives = 36/88 (40%), Gaps = 14/88 (15%)
Query: 11 DCLQGFQLTHSLGGGTGSGMGTLMISKIREEYPDRIMNTFSIVPSPKVSDTVVEPYNATL 70
D L +L + +GMG +I +I EE +++ V +++P T
Sbjct: 75 DGLAVLELEDEIDVIVIAGMGGTLIREILEEGKEKL---------KGVERLILQPNIHTY 125
Query: 71 SIHQ-LVEN----TDETFCIDNEALYEI 93
+ + L N ET ++ +YEI
Sbjct: 126 ELREWLSANSYEIKAETILEEDGKIYEI 153
>gnl|CDD|218278 pfam04816, DUF633, Family of unknown function (DUF633). This
family of proteins are uncharacterized have no known
function.
Length = 204
Score = 35.7 bits (83), Expect = 0.015
Identities = 22/105 (20%), Positives = 40/105 (38%), Gaps = 16/105 (15%)
Query: 11 DCLQGFQLTHSLGGGTGSGMGTLMISKIREEYPDRIMNTFSIVPSPKVSDTVVEPYNATL 70
D L + + +GMG L+I+ I E+ +++ V +++P N
Sbjct: 56 DGLAVLEELDVIDVIVIAGMGGLLIADILEQGKNKL---------AGVKRLILQPNNNEE 106
Query: 71 SIHQ-LVEN----TDETFCIDNEALYEI--CFRTLKLTTPTYGDL 108
+ + L N ET + +YEI + K + DL
Sbjct: 107 ELREWLSNNSYQIKAETILEERGKIYEILVAEKGKKPDKLSEEDL 151
>gnl|CDD|232805 TIGR00065, ftsZ, cell division protein FtsZ. This family consists
of cell division protein FtsZ, a GTPase found in
bacteria, the chloroplast of plants, and in
archaebacteria. Structurally similar to tubulin, FtsZ
undergoes GTP-dependent polymerization into filaments
that form a cytoskeleton involved in septum synthesis
[Cellular processes, Cell division].
Length = 349
Score = 33.1 bits (76), Expect = 0.18
Identities = 26/115 (22%), Positives = 52/115 (45%), Gaps = 6/115 (5%)
Query: 18 LTHSLGGGTGSGMGTLMISKIREEYPDRIMNTFSIVPSPKVSDTVVEPYNATLSIHQLVE 77
+T +GGGTG+G +++KI +E + T ++V P + + A + +L +
Sbjct: 107 ITAGMGGGTGTG-AAPVVAKIAKEL--GAL-TVAVVTKPFKFEGLKRRKKAEEGLERLKQ 162
Query: 78 NTDETFCIDNEALYEICFRTLKLTTPTYGDLNHLVSAAMSGVTTCLRFPGQLNSD 132
D I N+ L E+ + + ++ A+ G++ + PG +N D
Sbjct: 163 AVDTLIVIPNDKLLEVVPNL--PLNDAFKVADDVLVRAVKGISELITKPGLINID 215
>gnl|CDD|193426 pfam12953, DUF3842, Domain of unknown function (DUF3842). This
short protein is found mainly in firmicute bacteria. It
is functionally uncharacterized.
Length = 131
Score = 31.3 bits (72), Expect = 0.24
Identities = 11/22 (50%), Positives = 16/22 (72%)
Query: 25 GTGSGMGTLMISKIREEYPDRI 46
G G G+G +I K+R+E P+RI
Sbjct: 7 GQGGGIGKQIIEKLRKELPERI 28
>gnl|CDD|178346 PLN02745, PLN02745, Putative pectinesterase/pectinesterase
inhibitor.
Length = 596
Score = 29.8 bits (67), Expect = 2.2
Identities = 15/31 (48%), Positives = 21/31 (67%), Gaps = 2/31 (6%)
Query: 107 DLNHLVSAAMSGVTTCLR-FP-GQLNSDLRK 135
DLN+ +SA MS TC+ FP G+L S++ K
Sbjct: 182 DLNNWLSAVMSYQETCIDGFPEGKLKSEMEK 212
>gnl|CDD|217858 pfam04043, PMEI, Plant invertase/pectin methylesterase inhibitor.
This domain inhibits pectin methylesterases (PMEs) and
invertases through formation of a non-covalent 1:1
complex. It has been implicated in the regulation of
fruit development, carbohydrate metabolism and cell wall
extension. It may also be involved in inhibiting
microbial pathogen PMEs. It has been observed that it is
often expressed as a large inactive preprotein. It is
also found at the N-termini of PMEs predicted from DNA
sequences (personal obs:C Yeats), suggesting that both
PMEs and their inhibitor are expressed as a single
polyprotein and subsequently processed. It has two
disulphide bridges and is mainly alpha-helical.
Length = 145
Score = 27.9 bits (62), Expect = 4.1
Identities = 13/51 (25%), Positives = 20/51 (39%), Gaps = 11/51 (21%)
Query: 100 LTTPTYGDLNHLVSAAMSGVTTCL-----------RFPGQLNSDLRKLAVN 139
L + Y D +SAA++ TC + N ++RKL N
Sbjct: 91 LKSGDYDDARTWLSAALTNQDTCEDGFEEKGSGIKSPLAKRNDNVRKLTSN 141
>gnl|CDD|240226 PTZ00007, PTZ00007, (NAP-L) nucleosome assembly protein -L;
Provisional.
Length = 337
Score = 28.6 bits (64), Expect = 4.1
Identities = 15/52 (28%), Positives = 22/52 (42%), Gaps = 1/52 (1%)
Query: 278 LHWYLGEGMDEMEFTEAASNVLDLISEYQQYQEAAVDDEGGEDDNEEGDGDA 329
++W+LGE +DE + + D Y A+ D D NEE D
Sbjct: 272 VYWFLGEAIDEDSDYSSDEDDDD-YDSYDSSDSASSDSNSDVDTNEEDDRGE 322
>gnl|CDD|216659 pfam01715, IPPT, IPP transferase. This is a family of IPP
transferases EC:2.5.1.8 also known as tRNA
delta(2)-isopentenylpyrophosphate transferase. These
enzymes modify both cytoplasmic and mitochondrial tRNAs
at A(37) to give isopentenyl A(37).
Length = 253
Score = 28.4 bits (64), Expect = 4.4
Identities = 12/51 (23%), Positives = 16/51 (31%), Gaps = 6/51 (11%)
Query: 241 PRGLKMAATFIGNTTAIQELFRRISDQFDSMYKR------KAFLHWYLGEG 285
L IG + L RI+ + D M + KA L E
Sbjct: 147 KNALPYDIVQIGLARDREVLHERIARRVDDMLESGLVEEVKALYAQGLNED 197
>gnl|CDD|148689 pfam07230, Phage_T4_Gp20, Bacteriophage T4-like capsid assembly
protein (Gp20). This family consists of several
bacteriophage T4-like capsid assembly (or portal)
proteins. The exact mechanism by which the
double-stranded (ds) DNA bacteriophages incorporate the
portal protein at a unique vertex of the icosahedral
capsid is unknown. In phage T4, there is evidence that
this vertex, constituted by 12 subunits of gp20, acts as
an initiator for the assembly of the major capsid
protein and the scaffolding proteins into a prolate
icosahedron of precise dimensions. The regulation of
portal protein gene expression is an important regulator
of prohead assembly in bacteriophage T4.
Length = 500
Score = 28.5 bits (64), Expect = 5.6
Identities = 12/38 (31%), Positives = 22/38 (57%), Gaps = 5/38 (13%)
Query: 181 NMMAACDPRHGKYLTVAAIFRG--RMS---MKEVDEQM 213
N++A +P GKY + + + RM+ +KE D+Q+
Sbjct: 460 NLLATIEPYVGKYFSHEYVMKKILRMTDEEIKEEDKQI 497
>gnl|CDD|197252 cd09155, PLDc_PaCLS_like_1, Putative catalytic domain, repeat 1, of
Pseudomonas aeruginosa cardiolipin synthase and similar
proteins. Putative catalytic domain, repeat 1, of
Pseudomonas aeruginosa cardiolipin (CL) synthase (PaCLS)
and similar proteins. Although PaCLS and similar
proteins have not been functionally characterized,
members in this subfamily show high sequence homology to
bacterial CL synthases, which catalyze the reversible
phosphatidyl group transfer between two
phosphatidylglycerol molecules to form CL and glycerol.
Moreover, PaCLS and other members of this subfamily
contain two HKD motifs (H-x-K-x(4)-D, where x represents
any amino acid residue) that characterizes the
phospholipase D (PLD) superfamily. The two motifs may be
part of the active site and may be involved in
phosphatidyl group transfer.
Length = 156
Score = 27.2 bits (61), Expect = 7.6
Identities = 10/42 (23%), Positives = 14/42 (33%), Gaps = 8/42 (19%)
Query: 110 HLVSAAMSGVTTCL--------RFPGQLNSDLRKLAVNMVPF 143
L++ A +GV L LRK V + F
Sbjct: 40 ALIARAQAGVRVYLLYDEIGSHSLSRSYIERLRKAGVEVSAF 81
>gnl|CDD|214860 smart00856, PMEI, Plant invertase/pectin methylesterase inhibitor.
This domain inhibits pectin methylesterases (PMEs) and
invertases through formation of a non-covalent 1:1
complex. It has been implicated in the regulation of
fruit development, carbohydrate metabolism and cell wall
extension. It may also be involved in inhibiting
microbial pathogen PMEs. It has been observed that it is
often expressed as a large inactive preprotein. It is
also found at the N-termini of PMEs predicted from DNA
sequences, suggesting that both PMEs and their
inhibitors are expressed as a single polyprotein and
subsequently processed. It has two disulphide bridges
and is mainly alpha-helical.
Length = 148
Score = 27.3 bits (61), Expect = 7.9
Identities = 9/24 (37%), Positives = 14/24 (58%)
Query: 100 LTTPTYGDLNHLVSAAMSGVTTCL 123
L + Y D+ +SAA++ TCL
Sbjct: 94 LKSGDYDDVATWLSAALTDQDTCL 117
>gnl|CDD|200498 cd11237, Sema_1A, The Sema domain, a protein interacting module, of
semaphorin 1A (Sema1A). Sema1A is a transmembrane
protein. It has been shown to mediate the
defasciculation of motor axon bundles at specific choice
points. Sema1A binds to its receptor plexin A (PlexA),
which in turn triggers downstream signaling events
involving the receptor tyrosine kinase Otk, the
evolutionarily conserved flavoprotein monooxygenase
molecule interacting with CasL (MICAL), and the A kinase
anchoring protein Nervy, leading to repulsive
growth-cone response. Sema1A has also been shown to be
involved in synaptic formation. It is a member of the
semaphorin family of proteins. Semaphorins are
regulatory molecules in the development of the nervous
system and in axonal guidance. They also play important
roles in other biological processes, such as
angiogenesis, immune regulation, respiration systems and
cancer. The Sema domain is located at the N-terminus and
contains four disulfide bonds formed by eight conserved
cysteine residues. It serves as a receptor-recognition
and -binding module.
Length = 446
Score = 28.1 bits (63), Expect = 8.2
Identities = 18/46 (39%), Positives = 21/46 (45%), Gaps = 6/46 (13%)
Query: 126 PGQLNSDLRKLAVNMVPFPRLHFFM----PGF--APLTSRGSQQYR 165
PGQ +D R L V F + H M P F P+ R S QYR
Sbjct: 309 PGQCVNDSRTLPDVTVNFIKSHPLMDEAVPSFFGRPILVRTSLQYR 354
>gnl|CDD|173004 PRK14538, PRK14538, putative bifunctional signaling protein/50S
ribosomal protein L9; Provisional.
Length = 838
Score = 27.9 bits (62), Expect = 8.4
Identities = 12/33 (36%), Positives = 21/33 (63%)
Query: 199 IFRGRMSMKEVDEQMLNIQNKNASYFVEWIPNN 231
I+ R + +V E +LNIQN +A++ + I +N
Sbjct: 596 IYDNRSFLAQVAESVLNIQNVDAAFMIAKISDN 628
>gnl|CDD|130324 TIGR01257, rim_protein, retinal-specific rim ABC transporter. This
model describes the photoreceptor protein (rim protein)
in eukaryotes. It is the member of ABC transporter
superfamily. Rim protein is a membrane glycoprotein which
is localized in the photoreceptor outer segment discs.
Mutation/s in its genetic loci is implicated in the
recessive Stargardt's disease [Transport and binding
proteins, Other].
Length = 2272
Score = 28.1 bits (62), Expect = 9.3
Identities = 26/85 (30%), Positives = 43/85 (50%), Gaps = 17/85 (20%)
Query: 238 DIPPRG---LKMAATFIG-NTTAIQ---ELFR--RISDQFDSMYKRK--AFLHWYLGEGM 286
D+P L A FIG N++AI ELF R +F++M ++ F H+ LG G+
Sbjct: 1786 DVPSTAYVALSCANLFIGINSSAITFVLELFENNRTLLRFNAMLRKLLIVFPHFCLGRGL 1845
Query: 287 DEMEFTEAASNVLDLISEYQQYQEA 311
++ ++A ++V Y Q+ E
Sbjct: 1846 IDLALSQAVTDV------YAQFGEE 1864
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.319 0.134 0.399
Gapped
Lambda K H
0.267 0.0807 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 16,617,787
Number of extensions: 1567408
Number of successful extensions: 1444
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1404
Number of HSP's successfully gapped: 44
Length of query: 329
Length of database: 10,937,602
Length adjustment: 97
Effective length of query: 232
Effective length of database: 6,635,264
Effective search space: 1539381248
Effective search space used: 1539381248
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 59 (26.4 bits)