RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy14216
(329 letters)
>3ryc_B Tubulin beta chain; alpha-tubulin, beta-tubulin, GTPase,
microtubule, tubulin, cell cycle; HET: GTP GDP; 2.10A
{Ovis aries} PDB: 3ryf_B* 3ryh_B* 3ryi_B* 3hke_B*
3du7_B* 3e22_B* 3hkc_B* 3hkd_B* 3hkb_B* 3n2g_B* 3n2k_B*
1z2b_B* 2xrp_A* 1tvk_B* 1tub_B* 1jff_B* 1ia0_B* 1ffx_B*
1sa0_B* 1sa1_B* ...
Length = 445
Score = 588 bits (1518), Expect = 0.0
Identities = 279/322 (86%), Positives = 306/322 (95%)
Query: 5 KEAESCDCLQGFQLTHSLGGGTGSGMGTLMISKIREEYPDRIMNTFSIVPSPKVSDTVVE 64
KE+ESCDCLQGFQLTHSLGGGTGSGMGTL+ISKIREEYPDRIMNTFS++PSPKVSDTVVE
Sbjct: 122 KESESCDCLQGFQLTHSLGGGTGSGMGTLLISKIREEYPDRIMNTFSVMPSPKVSDTVVE 181
Query: 65 PYNATLSIHQLVENTDETFCIDNEALYEICFRTLKLTTPTYGDLNHLVSAAMSGVTTCLR 124
PYNATLS+HQLVENTDET+ IDNEALY+ICFRTLKLTTPTYGDLNHLVSA MSGVTTCLR
Sbjct: 182 PYNATLSVHQLVENTDETYSIDNEALYDICFRTLKLTTPTYGDLNHLVSATMSGVTTCLR 241
Query: 125 FPGQLNSDLRKLAVNMVPFPRLHFFMPGFAPLTSRGSQQYRSLTVPELVQQMFDAKNMMA 184
FPGQLN+DLRKLAVNMVPFPRLHFFMPGFAPLTSRGSQQYR+LTVPEL QQMFD+KNMMA
Sbjct: 242 FPGQLNADLRKLAVNMVPFPRLHFFMPGFAPLTSRGSQQYRALTVPELTQQMFDSKNMMA 301
Query: 185 ACDPRHGKYLTVAAIFRGRMSMKEVDEQMLNIQNKNASYFVEWIPNNCKTAVCDIPPRGL 244
ACDPRHG+YLTVA IFRGRMSMKEVDEQMLNIQNKN+SYFVEWIPNN KTAVCDIPPRGL
Sbjct: 302 ACDPRHGRYLTVATIFRGRMSMKEVDEQMLNIQNKNSSYFVEWIPNNVKTAVCDIPPRGL 361
Query: 245 KMAATFIGNTTAIQELFRRISDQFDSMYKRKAFLHWYLGEGMDEMEFTEAASNVLDLISE 304
KM++TFIGN+TAIQELF+RIS+QF +M++RKAFLHWY GEGMDEMEFTEA SN+ DL+SE
Sbjct: 362 KMSSTFIGNSTAIQELFKRISEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVSE 421
Query: 305 YQQYQEAAVDDEGGEDDNEEGD 326
YQQYQ+A D++G ++ E D
Sbjct: 422 YQQYQDATADEQGEFEEEEGED 443
>2bto_A Tubulin btuba; bacterial tubulin, polymerization, cytoskeleton,
protein COM cytoskeletal protein; HET: GTP; 2.5A
{Prosthecobacter dejongeii} SCOP: c.32.1.1 d.79.2.1 PDB:
2btq_A*
Length = 473
Score = 585 bits (1509), Expect = 0.0
Identities = 109/327 (33%), Positives = 179/327 (54%), Gaps = 3/327 (0%)
Query: 5 KEAESCDCLQGFQLTHSLGGGTGSGMGTLMISKIREEYPDRIMNTFSIVPSPKVSDTVVE 64
E + CD + G + H++GGGTGSG G L+I ++E+Y + + + +++PSP+VS V E
Sbjct: 126 YEIDKCDNVGGIIVLHAIGGGTGSGFGALLIESLKEKYGEIPVLSCAVLPSPQVSSVVTE 185
Query: 65 PYNATLSIHQLVENTDETFCIDNEALYEICFRTLKLTTPTYGDLNHLVSAAMSGVTTCLR 124
PYN +++ L + D DNEAL+++ R + +PT DLN L++ A++G+T +R
Sbjct: 186 PYNTVFALNTLRRSADACLIFDNEALFDLAHRKWNIESPTVDDLNLLITEALAGITASMR 245
Query: 125 FPGQLNSD--LRKLAVNMVPFPRLHFFMPGFAPLTSRGSQQYRSLTVPELVQQMFDAKNM 182
F G L + LR+L N+VP P LHF M FAPLT ++ L + E+++ +FD ++
Sbjct: 246 FSGFLTVEISLRELLTNLVPQPSLHFLMCAFAPLTPPDRSKFEELGIEEMIKSLFDNGSV 305
Query: 183 MAACDPRHGKYLTVAAIFRGRMSMKEVDEQMLNIQNKNASYFVEWIPNNCKTAVCDIPPR 242
AAC P G++L+ A ++RG M K + + L + WIP K + P
Sbjct: 306 FAACSPMEGRFLSTAVLYRGIMEDKPLADAALAAM-REKLPLTYWIPTAFKIGYVEQPGI 364
Query: 243 GLKMAATFIGNTTAIQELFRRISDQFDSMYKRKAFLHWYLGEGMDEMEFTEAASNVLDLI 302
+ + + N T I + RI FD +++RKAF +WYL EGM E + ++ +L+
Sbjct: 365 SHRKSMVLLANNTEIARVLDRICHNFDKLWQRKAFANWYLNEGMSEEQINVLRASAQELV 424
Query: 303 SEYQQYQEAAVDDEGGEDDNEEGDGDA 329
YQ +E+ + + + G A
Sbjct: 425 QSYQVAEESGAKAKVQDSAGDTGMRAA 451
>3cb2_A Gamma-1-tubulin, tubulin gamma-1 chain; lattice, microtubule,
nucleation, GTPase, lateral interaction, structural
protein, hydrolase; HET: GDP; 2.30A {Homo sapiens} PDB:
1z5v_A* 1z5w_A*
Length = 475
Score = 578 bits (1493), Expect = 0.0
Identities = 105/333 (31%), Positives = 180/333 (54%), Gaps = 8/333 (2%)
Query: 5 KEAESCDCLQGFQLTHSLGGGTGSGMGTLMISKIREEYPDRIMNTFSIVPSP-KVSDTVV 63
+EA+ D L+GF L HS+ GGTGSG+G+ ++ ++ + YP +++ T+S+ P+ ++SD VV
Sbjct: 124 READGSDSLEGFVLCHSIAGGTGSGLGSYLLERLNDRYPKKLVQTYSVFPNQDEMSDVVV 183
Query: 64 EPYNATLSIHQLVENTDETFCIDNEALYEICFRTLKLTTPTYGDLNHLVSAAMSGVTTCL 123
+PYN+ L++ +L +N D +DN AL I L + P++ +N LVS MS TT L
Sbjct: 184 QPYNSLLTLKRLTQNADCLVVLDNTALNRIATDRLHIQNPSFSQINQLVSTIMSASTTTL 243
Query: 124 RFPGQLNSDLRKLAVNMVPFPRLHFFMPGFAPLTSRG-SQQYRSLTVPELVQQMFDAKNM 182
R+PG +N+DL L +++P PRLHF M G+ PLT+ R TV ++++++ KN+
Sbjct: 244 RYPGYMNNDLIGLIASLIPTPRLHFLMTGYTPLTTDQSVASVRKTTVLDVMRRLLQPKNV 303
Query: 183 MAACDPRHGK---YLTVAAIFRGRMSMKEVDEQMLNIQNKNASYFVEWIPNNCKTAVCDI 239
M + Y+ + I +G + +V + + I+ + + F+ W P + + A+
Sbjct: 304 MVSTGRDRQTNHCYIAILNIIQGEVDPTQVHKSLQRIRERKLANFIPWGPASIQVALSRK 363
Query: 240 PP---RGLKMAATFIGNTTAIQELFRRISDQFDSMYKRKAFLHWYLGEGMDEMEFTEAAS 296
P +++ + N T+I LF R Q+D + KR+AFL + E M + F E +
Sbjct: 364 SPYLPSAHRVSGLMMANHTSISSLFERTCRQYDKLRKREAFLEQFRKEDMFKDNFDEMDT 423
Query: 297 NVLDLISEYQQYQEAAVDDEGGEDDNEEGDGDA 329
+ + +Y A D E+ D D
Sbjct: 424 SREIVQQLIDEYHAATRPDYISWGTQEQVDVDG 456
>2btq_B Tubulin btubb; structural protein, cytoskeletal protein/complex,
bacterial tubulin, cytoskeleton, polymerization,
verrucomicrobia; HET: GDP; 3.2A {Prosthecobacter
dejongeii}
Length = 426
Score = 571 bits (1473), Expect = 0.0
Identities = 113/305 (37%), Positives = 173/305 (56%), Gaps = 5/305 (1%)
Query: 5 KEAESCDCLQGFQLTHSLGGGTGSGMGTLMISKIREEYPDRIMNTFSIVPSPKVSDTVVE 64
E LQGF +THS+GGG+GSG+G+L++ ++R+ YP + + TFS+VPSP +SD+ VE
Sbjct: 123 SAVEKTKGLQGFLMTHSIGGGSGSGLGSLILERLRQAYPKKRIFTFSVVPSPLISDSAVE 182
Query: 65 PYNATLSIHQLVENTDETFCIDNEALYEICFRTLKLTTPTYGDLNHLVSAAMSGVTTCLR 124
PYNA L++ ++++N D +DNEAL+ I L +P Y DLN++++ +S VT LR
Sbjct: 183 PYNAILTLQRILDNADGAVLLDNEALFRIAKAKLN-RSPNYMDLNNIIALIVSSVTASLR 241
Query: 125 FPGQLNSDLRKLAVNMVPFPRLHFFMPGFAPLTSRGSQQYRSLTVPELVQQMFDAKNMMA 184
FPG+LN+DL + N+VPFP HF FAP+ G + P+L ++ F N A
Sbjct: 242 FPGKLNTDLSEFVTNLVPFPGNHFLTASFAPMRGAGQEGQVRTNFPDLARETFAQDNFTA 301
Query: 185 ACDPRHGKYLTVAAIFRGRMSMKEVDEQMLNIQNKNASYFVEWIP--NNCKTAVCDIPPR 242
A D + G YL +A+FRG + K+VDE M I + + + ++P K + P
Sbjct: 302 AIDWQQGVYLAASALFRGDVKAKDVDENMATI--RKSLNYASYMPASGGLKLGYAETAPE 359
Query: 243 GLKMAATFIGNTTAIQELFRRISDQFDSMYKRKAFLHWYLGEGMDEMEFTEAASNVLDLI 302
G + + N T I +F R+ QFD M+ A+ HWY G+ +A + + L
Sbjct: 360 GFASSGLALVNHTGIAAVFERLIAQFDIMFDNHAYTHWYENAGVSRDMMAKARNQIATLA 419
Query: 303 SEYQQ 307
Y+
Sbjct: 420 QSYRD 424
>3ryc_A Tubulin alpha chain; alpha-tubulin, beta-tubulin, GTPase,
microtubule, tubulin, cell cycle; HET: GTP GDP; 2.10A
{Ovis aries} PDB: 3ryf_A* 3ryh_A* 3ryi_A* 3hke_A*
3hkc_A* 3hkd_A* 3hkb_A* 3n2g_A* 3n2k_A* 1sa0_A* 1sa1_A*
3edl_F* 1ffx_A* 1ia0_A* 2hxf_A* 2hxh_A* 2p4n_A* 1jff_A*
2wbe_A* 3dco_A* ...
Length = 451
Score = 570 bits (1472), Expect = 0.0
Identities = 132/327 (40%), Positives = 198/327 (60%), Gaps = 8/327 (2%)
Query: 5 KEAESCDCLQGFQLTHSLGGGTGSGMGTLMISKIREEYPDRIMNTFSIVPSPKVSDTVVE 64
K A+ C LQGF + HS GGGTGSG +L++ ++ +Y + FSI P+P+VS VVE
Sbjct: 124 KLADQCTGLQGFLVFHSFGGGTGSGFTSLLMERLSVDYGKKSKLEFSIYPAPQVSTAVVE 183
Query: 65 PYNATLSIHQLVENTDETFCIDNEALYEICFRTLKLTTPTYGDLNHLVSAAMSGVTTCLR 124
PYN+ L+ H +E++D F +DNEA+Y+IC R L + PTY +LN L+S +S +T LR
Sbjct: 184 PYNSILTTHTTLEHSDCAFMVDNEAIYDICRRNLDIERPTYTNLNRLISQIVSSITASLR 243
Query: 125 FPGQLNSDLRKLAVNMVPFPRLHFFMPGFAPLTSRGSQQYRSLTVPELVQQMFDAKNMMA 184
F G LN DL + N+VP+PR+HF + +AP+ S + L+V E+ F+ N M
Sbjct: 244 FDGALNVDLTEFQTNLVPYPRIHFPLATYAPVISAEKAYHEQLSVAEITNACFEPANQMV 303
Query: 185 ACDPRHGKYLTVAAIFRGRMSMKEVDEQMLNIQNKNASYFVEWIPNNCKTAVCDIPPR-- 242
CDPRHGKY+ ++RG + K+V+ + I+ K + FV+W P K + PP
Sbjct: 304 KCDPRHGKYMACCLLYRGDVVPKDVNAAIATIKTKRSIQFVDWCPTGFKVGINYQPPTVV 363
Query: 243 ------GLKMAATFIGNTTAIQELFRRISDQFDSMYKRKAFLHWYLGEGMDEMEFTEAAS 296
++ A + NTTAI E + R+ +FD MY ++AF+HWY+GEGM+E EF+EA
Sbjct: 364 PGGDLAKVQRAVCMLSNTTAIAEAWARLDHKFDLMYAKRAFVHWYVGEGMEEGEFSEARE 423
Query: 297 NVLDLISEYQQYQEAAVDDEGGEDDNE 323
++ L +Y++ +V+ EG E+ E
Sbjct: 424 DMAALEKDYEEVGVDSVEGEGEEEGEE 450
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 55.8 bits (134), Expect = 1e-08
Identities = 58/371 (15%), Positives = 106/371 (28%), Gaps = 138/371 (37%)
Query: 24 GGTGSGMGTLMISKIREEYPDRIMNTFSIVPSPKVSDTVVEPYNATLSIHQLVENTDETF 83
GG G+ ++Y + + + + V D +++ TLS +L+ T
Sbjct: 161 GGQGNT----------DDYFEELRDLYQT-YHVLVGD-LIKFSAETLS--ELIRTTL--- 203
Query: 84 CIDNEALYEICFRTLK-LTTP-TYGDLNHLVSAAMS----GVTTCLRF----------PG 127
D E ++ L+ L P D ++L+S +S GV + PG
Sbjct: 204 --DAEKVFTQGLNILEWLENPSNTPDKDYLLSIPISCPLIGVIQLAHYVVTAKLLGFTPG 261
Query: 128 QLNSDLR-------------------------KLAVNMVPFPRLHFFMPGFAPLTSRGSQ 162
+L S L+ + + FF+ G R +
Sbjct: 262 ELRSYLKGATGHSQGLVTAVAIAETDSWESFFVSVRKAI---TVLFFI-GV-----RCYE 312
Query: 163 QYRSLTV-PELVQQMFDAKN-----MMAACDPRHGKYLTVAAIFRGRMSMKEVDEQMLNI 216
Y + ++ P +++ + M++ + + + + + I
Sbjct: 313 AYPNTSLPPSILEDSLENNEGVPSPMLSISNLTQEQVQDYVNKTNSHLP----AGKQVEI 368
Query: 217 QNKNASYFVEWIPNNCKTAVCDIPPRGLKMAATFIGNTTAIQELFRRIS-----DQ---- 267
N N V PP+ L + R+ DQ
Sbjct: 369 SLVNG-------AKN---LVVSGPPQSLY----------GLNLTLRKAKAPSGLDQSRIP 408
Query: 268 FDSMYKRKA-----FL------H-WYLGEGMDEMEFTEAASNVL-DLISEYQQYQEAA-- 312
F +RK FL H L A+ + DL+ +
Sbjct: 409 FS---ERKLKFSNRFLPVASPFHSHLL---------VPASDLINKDLVKNNVSFNAKDIQ 456
Query: 313 --V-DDEGGED 320
V D G D
Sbjct: 457 IPVYDTFDGSD 467
Score = 49.7 bits (118), Expect = 1e-06
Identities = 53/314 (16%), Positives = 85/314 (27%), Gaps = 153/314 (48%)
Query: 27 GS---GMGTLMISKIREEYP---------DRIMNT---FSIVPSPKVSDTVVEPYNATLS 71
GS GMG M + + D FSI+ +V L+
Sbjct: 1625 GSQEQGMG--M--DLYKTSKAAQDVWNRADNHFKDTYGFSIL-------DIVINNPVNLT 1673
Query: 72 IH-------QLVEN---------------TDETFCIDNEALYEICFR----TLKLTTPT- 104
IH ++ EN T++ F NE FR L T T
Sbjct: 1674 IHFGGEKGKRIRENYSAMIFETIVDGKLKTEKIFKEINEHSTSYTFRSEKGLLSATQFTQ 1733
Query: 105 ----------YGDLN-------------HLVS-------AAMSGVTTCLRFPGQLNSDLR 134
+ DL H S A+++ V + L
Sbjct: 1734 PALTLMEKAAFEDLKSKGLIPADATFAGH--SLGEYAALASLADV---MSI-----ESLV 1783
Query: 135 KLAVNMVPFPRLHFFMPGFAPLTSRGSQQYRSLTVP--ELVQQMFDAKNMMAACDPRHGK 192
++ + + RG + VP EL + + M A +P
Sbjct: 1784 EV---------VFY----------RG--MTMQVAVPRDELGRSNYG----MIAINP---- 1814
Query: 193 YLTVAAIFRGRMSMKEVDEQMLNIQNKNAS---YFVEWIPN-NC--KTAVCDIPPRGLKM 246
GR++ E + + + + VE I N N + V
Sbjct: 1815 ---------GRVAASFSQEALQYVVERVGKRTGWLVE-IVNYNVENQQYVA--------- 1855
Query: 247 AATFIGNTTAIQEL 260
A G+ A+ +
Sbjct: 1856 A----GDLRALDTV 1865
Score = 41.6 bits (97), Expect = 3e-04
Identities = 47/263 (17%), Positives = 79/263 (30%), Gaps = 64/263 (24%)
Query: 93 ICFRTLKLTTPTYGDLNH--LVSAAMSGVTTCLR--FPGQLNSDLRKLAVNMVPFPRLHF 148
R L L+ +G L H LV A + + L+ F L A + P
Sbjct: 4 YSTRPLTLS---HGSLEHVLLVPTASFFIASQLQEQFNKILPEPTEGFAADDEPTTPAEL 60
Query: 149 ---FMPGF-APLTSRGSQ-QYRSLTVPELVQQMFDAKNMMAACDPRHGKYLTVAAIFRGR 203
F+ G+ + L Q+ + L F+ + D H +AA
Sbjct: 61 VGKFL-GYVSSLVEPSKVGQFDQVL--NLCLTEFE-NCYLEGNDI-H----ALAAKLLQE 111
Query: 204 MSMKEVDEQMLNIQNKNASYFV------EWIPNNCKTAVCDIPPRG-LKMAATF--IGNT 254
V + L I+N Y +A+ G ++ A F GNT
Sbjct: 112 NDTTLVKTKEL-IKN----YITARIMAKRPFDKKSNSALFRAVGEGNAQLVAIFGGQGNT 166
Query: 255 ---------------TAIQELFRRISDQFDSMYKRKAFLHWYLGEGMDEMEFTEAASNVL 299
+ +L + ++ + + +G++ +E+ E SN
Sbjct: 167 DDYFEELRDLYQTYHVLVGDLIKFSAETLSELIRTTLDAEKVFTQGLNILEWLENPSNTP 226
Query: 300 D------------LISEYQ--QY 308
D LI Q Y
Sbjct: 227 DKDYLLSIPISCPLIGVIQLAHY 249
Score = 40.4 bits (94), Expect = 9e-04
Identities = 54/335 (16%), Positives = 89/335 (26%), Gaps = 142/335 (42%)
Query: 17 QLTHSLGGGTGSGMGTLM-----ISKIREEYPDRIMNT----FSI-------VP----SP 56
+L L G TG G + + E + + F I P P
Sbjct: 262 ELRSYLKGATGHSQGLVTAVAIAETDSWESFFVSVRKAITVLFFIGVRCYEAYPNTSLPP 321
Query: 57 KVSDTVVEPYNAT----LSIH-----QLVENTDETFCIDNEALYEICFRTLKLTTPTYGD 107
+ + +E LSI Q+ + ++T N L P
Sbjct: 322 SILEDSLENNEGVPSPMLSISNLTQEQVQDYVNKT----NSHL------------PAGKQ 365
Query: 108 L-----N---HLVSAAMSGVTTCLRFPGQLNSDLRKLAVNM------VPF----PRLHF- 148
+ N +LV +SG L LN LRK +PF +
Sbjct: 366 VEISLVNGAKNLV---VSGPPQSLY---GLNLTLRKAKAPSGLDQSRIPFSERKLKFSNR 419
Query: 149 FMPGFAPLTSRGSQQYRSLTVPELVQQMFDAKNMMAACDPRHGKYLTVAAIFRGRMSMKE 208
F+P +P F H L A+
Sbjct: 420 FLPVASP---------------------F------------HSHLLVPAS--------DL 438
Query: 209 VDEQMLNIQNKNASYFVEWIPNNCKTAVCDIPPRGLKMAATFIGNT--TAIQELFRRISD 266
+++ ++ V + + + V D TF G+ + RI D
Sbjct: 439 INKDLVKNN-------VSFNAKDIQIPVYD----------TFDGSDLRVLSGSISERIVD 481
Query: 267 QFDSMYKRKAFLHWYLGEGMDEMEFTEAASNVLDL 301
+ + W E A+++LD
Sbjct: 482 CIIRLP-----VKW-------ETTTQFKATHILDF 504
Score = 32.7 bits (74), Expect = 0.17
Identities = 33/190 (17%), Positives = 52/190 (27%), Gaps = 88/190 (46%)
Query: 53 VPSP-----KVSDTVVEPY----NATLSIHQLVE----NTDETFCI--DNEALYEICFRT 97
VPSP ++ V+ Y N+ L + VE N + + ++LY +
Sbjct: 334 VPSPMLSISNLTQEQVQDYVNKTNSHLPAGKQVEISLVNGAKNLVVSGPPQSLYGLNLTL 393
Query: 98 LKLTTPTYGDLN----------------------HLVSAAMSGVTTC------------- 122
K P+ D + H S + +
Sbjct: 394 RKAKAPSGLDQSRIPFSERKLKFSNRFLPVASPFH--SHLLVPASDLINKDLVKNNVSFN 451
Query: 123 ---LRFP------GQLNSDLRKLAVNMVP------------------FPRLHF--FMPG- 152
++ P G SDLR L+ ++ F H F PG
Sbjct: 452 AKDIQIPVYDTFDG---SDLRVLSGSISERIVDCIIRLPVKWETTTQFKATHILDFGPGG 508
Query: 153 ---FAPLTSR 159
LT R
Sbjct: 509 ASGLGVLTHR 518
Score = 30.8 bits (69), Expect = 0.88
Identities = 18/70 (25%), Positives = 26/70 (37%), Gaps = 18/70 (25%)
Query: 85 IDNEALYEICFRTLKLTTPTYGDL----NH------LVSA----AMSGVTTCLRFPGQLN 130
EAL + R K T G L N+ V+A A+ VT L F
Sbjct: 1821 FSQEALQYVVERVGKRT----GWLVEIVNYNVENQQYVAAGDLRALDTVTNVLNFIKLQK 1876
Query: 131 SDLRKLAVNM 140
D+ +L ++
Sbjct: 1877 IDIIELQKSL 1886
Score = 30.0 bits (67), Expect = 1.4
Identities = 12/43 (27%), Positives = 18/43 (41%), Gaps = 13/43 (30%)
Query: 10 CDCL----------QGFQLTHSL--GGGTGSGMGTLMISKIRE 40
DC+ F+ TH L G G SG+G L + ++
Sbjct: 480 VDCIIRLPVKWETTTQFKATHILDFGPGGASGLGVLT-HRNKD 521
Score = 28.9 bits (64), Expect = 3.4
Identities = 6/50 (12%), Positives = 19/50 (38%), Gaps = 1/50 (2%)
Query: 274 RKAFLHWYLGEGMDEMEFTEAASNVLDLISEYQQYQEAAVDDEGGEDDNE 323
++ F L E + + + +L+ ++ Y + V+ ++
Sbjct: 34 QEQFNKI-LPEPTEGFAADDEPTTPAELVGKFLGYVSSLVEPSKVGQFDQ 82
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 50.2 bits (119), Expect = 6e-07
Identities = 52/425 (12%), Positives = 110/425 (25%), Gaps = 145/425 (34%)
Query: 11 DCLQGFQLTHSLG----GGTGSGMGTLMIS-----KIREEYPDRI--------------- 46
L +L + G GSG + + K++ + +I
Sbjct: 142 QALL--ELRPAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVL 199
Query: 47 --MNTFSIVPSPKVSDTVVEPYNATLSIHQLVENTDETFCIDNEALYEIC---------- 94
+ P + N L IH + YE C
Sbjct: 200 EMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLK---SKPYENCLLVLLNVQNA 256
Query: 95 -----F----RTLKLTTPTYGDLNHLVSAAMS---------GVTT------CLRFPGQLN 130
F + L LTT + L +A + +T L++
Sbjct: 257 KAWNAFNLSCKIL-LTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRP 315
Query: 131 SDLRKLAVNMVPFPRLHFFMPGFAPLTSRG---SQQYRSLTVPELVQQMFDAKNMMAAC- 186
DL + + P + A G ++ + +L ++ +
Sbjct: 316 QDLPREVLTTNP---RRLSI--IAESIRDGLATWDNWKHVNCDKL-------TTIIESSL 363
Query: 187 ---DPR-HGKYLTVAAIFRGRMSMKEVD--EQMLNIQ-NKNASYFVEWIPNNC------- 232
+P + K ++F +L++ V + N
Sbjct: 364 NVLEPAEYRKMFDRLSVFP-----PSAHIPTILLSLIWFDVIKSDVMVVVNKLHKYSLVE 418
Query: 233 ---KTAVCDIPPRGLKMAATFIGNTTAIQELFRRISDQFDSMYKRKA----------FLH 279
K + IP L++ L R I D ++ + + +
Sbjct: 419 KQPKESTISIPSIYLELKVK----LENEYALHRSIVDHYNIPKTFDSDDLIPPYLDQYFY 474
Query: 280 WYLGEGMDEMEFTE---------------------------AASNVLDLISEYQQYQEAA 312
++G + +E E A+ ++L+ + + + Y+
Sbjct: 475 SHIGHHLKNIEHPERMTLFRMVFLDFRFLEQKIRHDSTAWNASGSILNTLQQLKFYKPYI 534
Query: 313 VDDEG 317
D++
Sbjct: 535 CDNDP 539
Score = 47.5 bits (112), Expect = 5e-06
Identities = 56/348 (16%), Positives = 103/348 (29%), Gaps = 123/348 (35%)
Query: 34 MISKIREEY--PDRIMNTFSIVPSPKVSDT-VVEPYNATLSIHQLVENTDETFCIDNEAL 90
++S I+ E P + + +D V YN +S Q +AL
Sbjct: 94 LMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQVFAKYN--VSRLQPYLKL-------RQAL 144
Query: 91 YEICFRTLKLTTPTYGDLNHLVSAAMSGV-TTCL------------RFP--------GQL 129
E+ R K G + G T + +
Sbjct: 145 LEL--RPAKNVL-IDG---------VLGSGKTWVALDVCLSYKVQCKMDFKIFWLNLKNC 192
Query: 130 NSD------LRKLAVNMVP--FPRLHFFMPGFAPLTS-----RG---SQQY-RSLTV--- 169
NS L+KL + P R + S R S+ Y L V
Sbjct: 193 NSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLN 252
Query: 170 ---PELVQQMFDAKNMMAACDPRHGKYL--T--------VAAIFRGRMSMKEVDEQMLNI 216
+ F+ C K L T ++A +S+ +
Sbjct: 253 VQNAKAWN-AFNLS-----C-----KILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPD 301
Query: 217 QNKNASYFVEWIPNNCKTA-----VCDIPPRGLKMAATFIGNTTAIQELFRRI-SDQFDS 270
+ K S ++++ +C+ V PR L + A I + A + ++ + D+ +
Sbjct: 302 EVK--SLLLKYL--DCRPQDLPREVLTTNPRRLSIIAESIRDGLATWDNWKHVNCDKLTT 357
Query: 271 MYKRKAFLHWYLGEGMDEMEFTEAASNVLDLISEYQQ-YQEAAV--DD 315
+ ++ L NVL+ +EY++ + +V
Sbjct: 358 I--IESSL------------------NVLE-PAEYRKMFDRLSVFPPS 384
Score = 32.5 bits (73), Expect = 0.23
Identities = 15/153 (9%), Positives = 49/153 (32%), Gaps = 31/153 (20%)
Query: 157 TSRGSQQYRSLTVPELVQQMFDAKNMMAACDPRHGKYLTVAAIFRGRMSMKEVDEQMLNI 216
G QY+ + + + F N D + V + + +S +E+D +++
Sbjct: 9 FETGEHQYQYKDILSVFEDAF-VDNF----DCKD-----VQDMPKSILSKEEIDHIIMSK 58
Query: 217 QNKNASYFVEWIPNNCKTAVCDIPPRGLKMAATFIGNTTAIQELFRRISDQFDSMYKRKA 276
+ + + W + ++ F+ ++ ++ + + ++ +
Sbjct: 59 DAVSGTLRLFWT-------LLSKQEEMVQK---FVE--EVLRINYKFLMSPIKTEQRQPS 106
Query: 277 FLHWYLGEGMDEMEFTEAASNVLDLISEYQQYQ 309
M + E + + + +Y
Sbjct: 107 ---------MMTRMYIEQRDRLYNDNQVFAKYN 130
>3v3t_A Cell division GTPase FTSZ, diverged; TUBZ, tubulin/FTSZ related,
rossmann fold, GTP bindi structural protein; 2.30A
{Clostridium botulinum C}
Length = 360
Score = 43.5 bits (102), Expect = 5e-05
Identities = 18/120 (15%), Positives = 43/120 (35%), Gaps = 19/120 (15%)
Query: 18 LTHSLGGGTGSGMGTLMISKIREEYPDRIMNTFSIVPSPKVSDTVVEPYNATLSIHQLVE 77
++ GG GSG+ ++ ++ YP++ ++P ++ + E NA + ++
Sbjct: 94 FVATMAGGAGSGITPPILGLAKQMYPNKHFGFVGVLPKA--TEDIDEHMNAIACWNDIMR 151
Query: 78 NTDET-----FCIDNEALYEICFRTLKLTTPTYGDLNHLVSAAMSGVTTCLRFPGQLNSD 132
+T+E + +DN D+N + + + D
Sbjct: 152 STNEGKDISIYLLDNNKRE------------KESDINKEFATLFNDFMNMSESHAEGVVD 199
>4ei7_A Plasmid replication protein REPX; GTP hydrolase, plasmid
segregation; HET: GDP; 1.90A {Bacillus cereus} PDB:
4ei8_A 4ei9_A*
Length = 389
Score = 37.8 bits (87), Expect = 0.004
Identities = 27/123 (21%), Positives = 44/123 (35%), Gaps = 12/123 (9%)
Query: 18 LTHSLGGGTGSGMGTLMISKIREEYPDRIMNTFSIVPSPKVSDTVVEPYNATLSIHQLVE 77
+T LGGGTG+G I + E N ++ P+ ++ + NAT I +
Sbjct: 117 ITCGLGGGTGTGALLKAIEMLYEHD----YNFGLLLTLPRDAEALKVLENATSRIRSIAM 172
Query: 78 NTDETFC---IDNEALYEICFRTLKLTTPT--YGDLNHLVSAA---MSGVTTCLRFPGQL 129
N + IDN LY N ++ A ++ VT+
Sbjct: 173 NQEAFGSIVLIDNAKLYRKFEEENPSALANEYTSYSNKYIADALHEINLVTSSFTPFSDT 232
Query: 130 NSD 132
+ D
Sbjct: 233 HFD 235
>3m89_A FTSZ/tubulin-related protein; partition, TUBZ, GTP-binding,
nucleotide-BIND structural protein; HET: GSP; 2.00A
{Bacillus thuringiensis} PDB: 3m8k_A 2xka_A* 2xkb_A*
Length = 427
Score = 33.4 bits (75), Expect = 0.094
Identities = 17/91 (18%), Positives = 29/91 (31%), Gaps = 15/91 (16%)
Query: 16 FQLTHSLGGGTGSGMGTLMISKIREEYPDRIMNTFSIVPSPKVSDTVVEPYNATLSIHQL 75
F + GGG G+G G+L++ IRE++ ++ P + LS
Sbjct: 151 FLICLGAGGGVGTGWGSLVLQLIREQFFP--CPVSMLISLPSGDPDEINNALVLLSEIDE 208
Query: 76 VENTDETFC-------------IDNEALYEI 93
+ DN + I
Sbjct: 209 FMREQDRLFGNSDIKPLANVIVNDNTQMQRI 239
>3dtn_A Putative methyltransferase MM_2633; structural genomics, unknown
function, PSI-2, protein structure initiative; 2.09A
{Methanosarcina mazei}
Length = 234
Score = 31.7 bits (72), Expect = 0.26
Identities = 8/50 (16%), Positives = 20/50 (40%), Gaps = 1/50 (2%)
Query: 253 NTTAIQELFRRISDQFDSMYKR-KAFLHWYLGEGMDEMEFTEAASNVLDL 301
+ + I+ F +S ++D ++ + G + ++LDL
Sbjct: 2 SLSEIKRKFDAVSGKYDEQRRKFIPCFDDFYGVSVSIASVDTENPDILDL 51
>1pq1_B BCL2-like protein 11; BCL-XL/BIM, apoptosis; 1.65A {Mus musculus}
Length = 33
Score = 28.2 bits (62), Expect = 0.33
Identities = 12/24 (50%), Positives = 16/24 (66%), Gaps = 1/24 (4%)
Query: 258 QELFRRISDQFDSMYKRKAFLHWY 281
QEL RRI D+F+ Y R+ F + Y
Sbjct: 10 QEL-RRIGDEFNETYTRRVFANDY 32
>2cj4_A Invertase inhibitor; protein binding, four-helix bundle, helical
hairpin; 1.63A {Nicotiana tabacum} SCOP: a.29.6.1 PDB:
2cj5_A 2cj6_A 2cj7_A 2cj8_A 1rj1_A 1rj4_A* 2xqr_B*
Length = 150
Score = 29.6 bits (66), Expect = 0.73
Identities = 8/47 (17%), Positives = 13/47 (27%), Gaps = 7/47 (14%)
Query: 100 LTTPTYGDLNHLVSAAMSGVTTCLR-FPG------QLNSDLRKLAVN 139
LT + + C F G LN + +L+
Sbjct: 95 LTKGDPKFAEDGMVGSSGDAQECEEYFKGSKSPFSALNIAVHELSDV 141
>1xg2_B Pectinesterase inhibitor; protein-protein complex, beta helix,four
helix bundle, hydrolase/hydrolase inhibitor complex;
1.90A {Actinidia chinensis}
Length = 153
Score = 29.6 bits (66), Expect = 0.83
Identities = 16/50 (32%), Positives = 18/50 (36%), Gaps = 10/50 (20%)
Query: 100 LTTPTYGDLNHLVSAAMSGVTTCLR-FPG---------QLNSDLRKLAVN 139
LT+ Y LN SAA G TC F G Q + L L
Sbjct: 93 LTSGDYNSLNIYASAAFDGAGTCEDSFEGPPNIPTQLHQADLKLEDLCDI 142
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna; HET:
CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 28.8 bits (63), Expect = 1.4
Identities = 6/23 (26%), Positives = 8/23 (34%), Gaps = 6/23 (26%)
Query: 133 LRKLAVNMVPFPRLHFFMPGFAP 155
L+KL L + AP
Sbjct: 22 LKKLQ------ASLKLYADDSAP 38
>1x91_A Invertase/pectin methylesterase inhibitor family protein;
four-helix bundle, alpha hairpin, disulfide bridge,
domain- swapping, linker; 1.50A {Arabidopsis thaliana}
SCOP: a.29.6.1 PDB: 1x8z_A 1x90_A
Length = 153
Score = 28.0 bits (62), Expect = 2.5
Identities = 10/24 (41%), Positives = 13/24 (54%)
Query: 100 LTTPTYGDLNHLVSAAMSGVTTCL 123
L + +N VSAA+ G TCL
Sbjct: 93 LASGDGMGMNMKVSAALDGADTCL 116
>2pff_A Fatty acid synthase subunit alpha, 3-oxoacyl-[acyl-carrier-PR; fatty
acid synthase, acyl-carrier-protein, beta-ketoacyl RED
beta-ketoacyl synthase, dehydratase; 4.00A {Saccharomyces
cerevisiae}
Length = 1688
Score = 29.1 bits (65), Expect = 2.8
Identities = 15/54 (27%), Positives = 24/54 (44%), Gaps = 8/54 (14%)
Query: 22 LGGGTGSGMGTLMISKIREEYPDRIMNTFSIVPSPKVSDTVVEPYNATLSIHQL 75
+G +GSGMG + S +R + DR P +D + E + T+S
Sbjct: 1044 VGNCSGSGMGGV--SALRGMFKDRFK------DEPVQNDILQESFINTMSAWVN 1089
>3r4v_A Putative uncharacterized protein; tubulin, unknown function; HET:
GDP; 1.67A {Pseudomonas phage 201phi2-1} PDB: 3rb8_A*
Length = 315
Score = 27.9 bits (61), Expect = 4.5
Identities = 13/72 (18%), Positives = 29/72 (40%), Gaps = 2/72 (2%)
Query: 18 LTHSLGGGTGSGMGTLMISKIREEYPDRIMNTFSIVPSPKVSDTVVEPYNATLSIHQLVE 77
+ +SLGGG+GS +G L+ ++ + + + S ++ TL + +
Sbjct: 86 VCYSLGGGSGSVLGPLITGQLADRKASFVSFVVGAMESTDNLGNDIDTMK-TLEAIAVNK 144
Query: 78 NTDETFC-IDNE 88
+ + N
Sbjct: 145 HLPIVVNYVPNT 156
>1vhc_A Putative KHG/KDPG aldolase; structural genomics, unknown function;
HET: MSE; 1.89A {Haemophilus influenzae} SCOP: c.1.10.1
Length = 224
Score = 27.1 bits (60), Expect = 6.3
Identities = 11/68 (16%), Positives = 26/68 (38%)
Query: 85 IDNEALYEICFRTLKLTTPTYGDLNHLVSAAMSGVTTCLRFPGQLNSDLRKLAVNMVPFP 144
N + ++C TP + + A G++ FP + + ++ + + P+
Sbjct: 97 GLNPKIVKLCQDLNFPITPGVNNPMAIEIALEMGISAVKFFPAEASGGVKMIKALLGPYA 156
Query: 145 RLHFFMPG 152
+L G
Sbjct: 157 QLQIMPTG 164
>1wbh_A KHG/KDPG aldolase; lyase; 1.55A {Escherichia coli} SCOP: c.1.10.1
PDB: 2c0a_A 1wau_A 1eua_A 1eun_A 1fq0_A* 1fwr_A*
Length = 214
Score = 27.1 bits (60), Expect = 7.8
Identities = 24/121 (19%), Positives = 37/121 (30%), Gaps = 18/121 (14%)
Query: 35 ISKIREEYPDRIMNTFSIVPSPKVSDTVVEPYNATLSIHQLVENTDETFCID---NEALY 91
I I +E P+ I TV+ P V F I E L
Sbjct: 58 IRAIAKEVPEAI---VGAG-------TVLNPQQL-----AEVTEAGAQFAISPGLTEPLL 102
Query: 92 EICFRTLKLTTPTYGDLNHLVSAAMSGVTTCLRFPGQLNSDLRKLAVNMVPFPRLHFFMP 151
+ P ++ L+ G+ FP + N ++ L PF ++ F
Sbjct: 103 KAATEGTIPLIPGISTVSELMLGMDYGLKEFKFFPAEANGGVKALQAIAGPFSQVRFCPT 162
Query: 152 G 152
G
Sbjct: 163 G 163
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.319 0.134 0.399
Gapped
Lambda K H
0.267 0.0526 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 5,041,933
Number of extensions: 297221
Number of successful extensions: 625
Number of sequences better than 10.0: 1
Number of HSP's gapped: 612
Number of HSP's successfully gapped: 32
Length of query: 329
Length of database: 6,701,793
Length adjustment: 94
Effective length of query: 235
Effective length of database: 4,077,219
Effective search space: 958146465
Effective search space used: 958146465
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 57 (26.2 bits)