RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy14216
(329 letters)
>d1tubb2 d.79.2.1 (B:246-437) Tubulin beta-subunit {Pig (Sus scrofa)
[TaxId: 9823]}
Length = 184
Score = 287 bits (736), Expect = 5e-99
Identities = 162/184 (88%), Positives = 178/184 (96%)
Query: 127 GQLNSDLRKLAVNMVPFPRLHFFMPGFAPLTSRGSQQYRSLTVPELVQQMFDAKNMMAAC 186
GQLN+DLRKLAVNMVPFPRLHFFMPGFAPLTSRGSQQYR+LTVPEL QQMFDAKNMMAAC
Sbjct: 1 GQLNADLRKLAVNMVPFPRLHFFMPGFAPLTSRGSQQYRALTVPELTQQMFDAKNMMAAC 60
Query: 187 DPRHGKYLTVAAIFRGRMSMKEVDEQMLNIQNKNASYFVEWIPNNCKTAVCDIPPRGLKM 246
DPRHG+YLTVAA+FRGRMSMKEVDEQMLN+QNKN+SYFVEWIPNN KTAVCDIPPRGLKM
Sbjct: 61 DPRHGRYLTVAAVFRGRMSMKEVDEQMLNVQNKNSSYFVEWIPNNVKTAVCDIPPRGLKM 120
Query: 247 AATFIGNTTAIQELFRRISDQFDSMYKRKAFLHWYLGEGMDEMEFTEAASNVLDLISEYQ 306
+ATFIGN+TAIQELF+RIS+QF +M++RKAFLHWY GEGMDEMEFTEA SN+ DL+SEYQ
Sbjct: 121 SATFIGNSTAIQELFKRISEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVSEYQ 180
Query: 307 QYQE 310
QYQ+
Sbjct: 181 QYQD 184
>d1tuba2 d.79.2.1 (A:246-440) Tubulin alpha-subunit {Pig (Sus
scrofa) [TaxId: 9823]}
Length = 195
Score = 273 bits (700), Expect = 3e-93
Identities = 71/195 (36%), Positives = 109/195 (55%), Gaps = 8/195 (4%)
Query: 127 GQLNSDLRKLAVNMVPFPRLHFFMPGFAPLTSRGSQQYRSLTVPELVQQMFDAKNMMAAC 186
G LN DL + N+VP+PR HF + +AP+ S + L+V E+ F+ N M C
Sbjct: 1 GALNVDLTEFQTNLVPYPRGHFPLATYAPVISAEKAYHEQLSVAEITNACFEPANQMVKC 60
Query: 187 DPRHGKYLTVAAIFRGRMSMKEVDEQMLNIQNKNASYFVEWIPNNCKTAVCDIPPRGL-- 244
DPRHGKY+ ++RG + K+V+ + I+ K FV+W P K + PP +
Sbjct: 61 DPRHGKYMACCLLYRGDVVPKDVNAAIATIKTKRTIQFVDWCPTGFKVGINYEPPTVVPG 120
Query: 245 ------KMAATFIGNTTAIQELFRRISDQFDSMYKRKAFLHWYLGEGMDEMEFTEAASNV 298
+ A + NTTAI E + R+ +FD MY ++AF+HWY+GEGM+E EF+EA ++
Sbjct: 121 GDLAKVQRAVCMLSNTTAIAEAWARLDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDM 180
Query: 299 LDLISEYQQYQEAAV 313
L +Y++ +V
Sbjct: 181 AALEKDYEEVGVDSV 195
>d2btoa2 d.79.2.1 (A:253-432) Tubulin alpha-subunit {Prosthecobacter
dejongeii [TaxId: 48465]}
Length = 180
Score = 254 bits (650), Expect = 5e-86
Identities = 59/179 (32%), Positives = 93/179 (51%), Gaps = 1/179 (0%)
Query: 132 DLRKLAVNMVPFPRLHFFMPGFAPLTSRGSQQYRSLTVPELVQQMFDAKNMMAACDPRHG 191
LR+L N+VP P LHF M FAPLT ++ L + E+++ +FD ++ AAC P G
Sbjct: 3 SLRELLTNLVPQPSLHFLMCAFAPLTPPDRSKFEELGIEEMIKSLFDNGSVFAACSPMEG 62
Query: 192 KYLTVAAIFRGRMSMKEVDEQMLNIQNKNASYFVEWIPNNCKTAVCDIPPRGLKMAATFI 251
++L+ A ++RG M K + + L + WIP K + P + + +
Sbjct: 63 RFLSTAVLYRGIMEDKPLADAALAAMREK-LPLTYWIPTAFKIGYVEQPGISHRKSMVLL 121
Query: 252 GNTTAIQELFRRISDQFDSMYKRKAFLHWYLGEGMDEMEFTEAASNVLDLISEYQQYQE 310
N T I + RI FD +++RKAF +WYL EGM E + ++ +L+ YQ +E
Sbjct: 122 ANNTEIARVLDRICHNFDKLWQRKAFANWYLNEGMSEEQINVLRASAQELVQSYQVAEE 180
>d1tubb1 c.32.1.1 (B:1-245) Tubulin beta-subunit {Pig (Sus scrofa)
[TaxId: 9823]}
Length = 243
Score = 207 bits (527), Expect = 2e-66
Identities = 115/122 (94%), Positives = 121/122 (99%)
Query: 5 KEAESCDCLQGFQLTHSLGGGTGSGMGTLMISKIREEYPDRIMNTFSIVPSPKVSDTVVE 64
KE+ESCDCLQGFQLTHSLGGGTGSGMGTL+ISKIREEYPDRIMNTFS+VPSPKVSDTVVE
Sbjct: 122 KESESCDCLQGFQLTHSLGGGTGSGMGTLLISKIREEYPDRIMNTFSVVPSPKVSDTVVE 181
Query: 65 PYNATLSIHQLVENTDETFCIDNEALYEICFRTLKLTTPTYGDLNHLVSAAMSGVTTCLR 124
PYNATLS+HQLVENTDET+CIDNEALY+ICFRTLKLTTPTYGDLNHLVSA MSGVTTCLR
Sbjct: 182 PYNATLSVHQLVENTDETYCIDNEALYDICFRTLKLTTPTYGDLNHLVSATMSGVTTCLR 241
Query: 125 FP 126
FP
Sbjct: 242 FP 243
>d1tuba1 c.32.1.1 (A:1-245) Tubulin alpha-subunit {Pig (Sus scrofa)
[TaxId: 9823]}
Length = 245
Score = 201 bits (512), Expect = 4e-64
Identities = 56/121 (46%), Positives = 80/121 (66%)
Query: 5 KEAESCDCLQGFQLTHSLGGGTGSGMGTLMISKIREEYPDRIMNTFSIVPSPKVSDTVVE 64
K A+ C LQGF + HS GGGTGSG +L++ ++ +Y + FSI P+P+VS VVE
Sbjct: 124 KLADQCTGLQGFSVFHSFGGGTGSGFTSLLMERLSVDYGKKSKLEFSIYPAPQVSTAVVE 183
Query: 65 PYNATLSIHQLVENTDETFCIDNEALYEICFRTLKLTTPTYGDLNHLVSAAMSGVTTCLR 124
PYN+ L+ H +E++D F +DNEA+Y+IC R L + PTY +LN L+ +S +T LR
Sbjct: 184 PYNSILTTHTTLEHSDCAFMVDNEAIYDICRRNLDIERPTYTNLNRLIGQIVSSITASLR 243
Query: 125 F 125
F
Sbjct: 244 F 244
>d2btoa1 c.32.1.1 (A:3-246) Tubulin alpha-subunit {Prosthecobacter
dejongeii [TaxId: 48465]}
Length = 244
Score = 196 bits (500), Expect = 2e-62
Identities = 46/121 (38%), Positives = 77/121 (63%)
Query: 5 KEAESCDCLQGFQLTHSLGGGTGSGMGTLMISKIREEYPDRIMNTFSIVPSPKVSDTVVE 64
E + CD + G + H++GGGTGSG G L+I ++E+Y + + + +++PSP+VS V E
Sbjct: 124 YEIDKCDNVGGIIVLHAIGGGTGSGFGALLIESLKEKYGEIPVLSCAVLPSPQVSSVVTE 183
Query: 65 PYNATLSIHQLVENTDETFCIDNEALYEICFRTLKLTTPTYGDLNHLVSAAMSGVTTCLR 124
PYN +++ L + D DNEAL+++ R + +PT DLN L++ A++G+T +R
Sbjct: 184 PYNTVFALNTLRRSADACLIFDNEALFDLAHRKWNIESPTVDDLNLLITEALAGITASMR 243
Query: 125 F 125
F
Sbjct: 244 F 244
>d1ofua1 c.32.1.1 (A:11-208) Cell-division protein FtsZ {Pseudomonas
aeruginosa [TaxId: 287]}
Length = 198
Score = 45.3 bits (107), Expect = 3e-06
Identities = 28/128 (21%), Positives = 53/128 (41%), Gaps = 8/128 (6%)
Query: 6 EAESCDCLQGFQLTH---SLGGGTGSGMGTLMISKIREEYPDRIMNTFSIVPSPKVSDTV 62
+ L+G + +GGGTG+G ++ +E + T ++V P +
Sbjct: 76 RERISEVLEGADMVFITTGMGGGTGTGAAPIIAEVAKEMG----ILTVAVVTRPFPFEGR 131
Query: 63 VEPYNATLSIHQLVENTDETFCIDNEALYEICFRTLKLTTPTYGDLNHLVSAAMSGVTTC 122
A I L E+ D I NE L I + L + + +++ A+ G++
Sbjct: 132 KRMQIADEGIRALAESVDSLITIPNEKLLTILGKDASLLA-AFAKADDVLAGAVRGISDI 190
Query: 123 LRFPGQLN 130
++ PG +N
Sbjct: 191 IKRPGMIN 198
>d1w5fa1 c.32.1.1 (A:22-215) Cell-division protein FtsZ {Thermotoga
maritima [TaxId: 2336]}
Length = 194
Score = 41.9 bits (98), Expect = 3e-05
Identities = 24/125 (19%), Positives = 48/125 (38%), Gaps = 8/125 (6%)
Query: 6 EAESCDCLQGFQLTH---SLGGGTGSGMGTLMISKIREEYPDRIMNTFSIVPSPKVSDTV 62
E + + LQ + GGGTG+G ++ +E + +IV +P +
Sbjct: 75 EEKIREVLQDTHMVFITAGFGGGTGTGASPVIAKIAKEMGILTV----AIVTTPFYFEGP 130
Query: 63 VEPYNATLSIHQLVENTDETFCIDNEALYEICFRTLKLTTPTYGDLNHLVSAAMSGVTTC 122
A + +L ++ D I N L E R +K+ + + + + G++
Sbjct: 131 ERLKKAIEGLKKLRKHVDTLIKISNNKLMEELPRDVKIKD-AFLKADETLHQGVKGISEL 189
Query: 123 LRFPG 127
+ G
Sbjct: 190 ITKRG 194
>d1rq2a1 c.32.1.1 (A:8-205) Cell-division protein FtsZ
{Mycobacterium tuberculosis [TaxId: 1773]}
Length = 198
Score = 41.0 bits (96), Expect = 6e-05
Identities = 28/128 (21%), Positives = 51/128 (39%), Gaps = 8/128 (6%)
Query: 6 EAESCDCLQGFQLTH---SLGGGTGSGMGTLMISKIREEYPDRIMNTFSIVPSPKVSDTV 62
+ E + L+G + GGGTG+G ++ S R+ T +V P +
Sbjct: 76 KDEIEELLRGADMVFVTAGEGGGTGTGGAPVVASIARKLG----ALTVGVVTRPFSFEGK 131
Query: 63 VEPYNATLSIHQLVENTDETFCIDNEALYEICFRTLKLTTPTYGDLNHLVSAAMSGVTTC 122
A I L E+ D I N+ L ++ + L + + ++ + G+T
Sbjct: 132 RRSNQAENGIAALRESCDTLIVIPNDRLLQMGDAAVSLMD-AFRSADEVLLNGVQGITDL 190
Query: 123 LRFPGQLN 130
+ PG +N
Sbjct: 191 ITTPGLIN 198
>d2vapa1 c.32.1.1 (A:23-231) Cell-division protein FtsZ {Archaeon
Methanococcus jannaschii [TaxId: 2190]}
Length = 209
Score = 38.0 bits (88), Expect = 6e-04
Identities = 24/86 (27%), Positives = 39/86 (45%), Gaps = 4/86 (4%)
Query: 8 ESCDCLQGFQLTHSLGGGTGSGMGTLMISKIREEYPDRIMNTFSIVPSPKVSDTVVEPYN 67
+ +T LGGGTG+G ++ ++ T ++V P V + V N
Sbjct: 95 AAIQDSDMVFITCGLGGGTGTGSAPVVAEISKKIG----ALTVAVVTLPFVMEGKVRMKN 150
Query: 68 ATLSIHQLVENTDETFCIDNEALYEI 93
A + +L ++TD I NE L+EI
Sbjct: 151 AMEGLERLKQHTDTLVVIPNEKLFEI 176
>d1x91a_ a.29.6.1 (A:) Pectin methylesterase inhibitor 1, PMEI1
{Thale cress (Arabidopsis thaliana) [TaxId: 3702]}
Length = 149
Score = 28.1 bits (62), Expect = 0.81
Identities = 13/62 (20%), Positives = 26/62 (41%), Gaps = 5/62 (8%)
Query: 84 CIDN--EALYEICFRTLKLTTPTYGDLNHLVSAAMSGVTTC---LRFPGQLNSDLRKLAV 138
C+D A+ + L + +N VSAA+ G TC ++ ++S + +
Sbjct: 71 CVDEYESAIGNLEEAFEHLASGDGMGMNMKVSAALDGADTCLDDVKRLRSVDSSVVNNSK 130
Query: 139 NM 140
+
Sbjct: 131 TI 132
>d2cj4a1 a.29.6.1 (A:4-150) Invertase inhibitor {Common tobacco
(Nicotiana tabacum) [TaxId: 4097]}
Length = 147
Score = 27.4 bits (60), Expect = 1.5
Identities = 8/47 (17%), Positives = 13/47 (27%), Gaps = 7/47 (14%)
Query: 100 LTTPTYGDLNHLVSAAMSGVTTCLR-FPG------QLNSDLRKLAVN 139
LT + + C F G LN + +L+
Sbjct: 92 LTKGDPKFAEDGMVGSSGDAQECEEYFKGSKSPFSALNIAVHELSDV 138
>d1mxsa_ c.1.10.1 (A:) KDPG aldolase {Pseudomonas putida [TaxId:
303]}
Length = 216
Score = 26.1 bits (57), Expect = 6.0
Identities = 10/66 (15%), Positives = 21/66 (31%)
Query: 87 NEALYEICFRTLKLTTPTYGDLNHLVSAAMSGVTTCLRFPGQLNSDLRKLAVNMVPFPRL 146
E + E + P + ++ G FP +++ + + PF +
Sbjct: 99 TEDILEAGVDSEIPLLPGISTPSEIMMGYALGYRRFKLFPAEISGGVAAIKAFGGPFGDI 158
Query: 147 HFFMPG 152
F G
Sbjct: 159 RFCPTG 164
>d1piia1 c.1.2.4 (A:255-452) N-(5'phosphoribosyl)antranilate
isomerase, PRAI {Escherichia coli [TaxId: 562]}
Length = 198
Score = 25.3 bits (54), Expect = 9.8
Identities = 17/116 (14%), Positives = 27/116 (23%), Gaps = 1/116 (0%)
Query: 204 MSMKEVDEQMLNIQNKNASYFVEWIPNNCKTAVCDIPPRGLKMAATFIGNTTAIQELFRR 263
+ +V ++ + T +P A +G T +E
Sbjct: 60 HDIADVVDKAKVLSLAAVQLHGNEEQLYIDTLREALPAHVAIWKALSVGETLPAREFQHV 119
Query: 264 ISDQFDSMYKRKA-FLHWYLGEGMDEMEFTEAASNVLDLISEYQQYQEAAVDDEGG 318
D+ W L G A D E Q A +D
Sbjct: 120 DKYVLDNGQGGSGQRFDWSLLNGQSLGNVLLAGGLGADNCVEAAQTGCAGLDFNSA 175
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.319 0.134 0.399
Gapped
Lambda K H
0.267 0.0583 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,214,004
Number of extensions: 54311
Number of successful extensions: 168
Number of sequences better than 10.0: 1
Number of HSP's gapped: 165
Number of HSP's successfully gapped: 15
Length of query: 329
Length of database: 2,407,596
Length adjustment: 86
Effective length of query: 243
Effective length of database: 1,226,816
Effective search space: 298116288
Effective search space used: 298116288
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 53 (24.5 bits)