Query psy14217
Match_columns 529
No_of_seqs 224 out of 1739
Neff 9.4
Searched_HMMs 29240
Date Fri Aug 16 22:25:20 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy14217.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/14217hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1hr6_A Alpha-MPP, mitochondria 100.0 2.5E-62 8.4E-67 515.1 52.0 435 61-513 3-451 (475)
2 3eoq_A Putative zinc protease; 100.0 9.9E-60 3.4E-64 485.4 47.3 401 64-500 2-405 (406)
3 3hdi_A Processing protease; CA 100.0 2.1E-59 7.3E-64 485.2 47.0 407 64-506 2-411 (421)
4 1pp9_A Ubiquinol-cytochrome C 100.0 2.2E-58 7.5E-63 481.3 48.0 431 60-513 10-442 (446)
5 1hr6_B Beta-MPP, mitochondrial 100.0 9.2E-58 3.1E-62 476.1 49.8 433 61-513 4-442 (443)
6 3ami_A Zinc peptidase; alpha/b 100.0 3.8E-57 1.3E-61 471.8 44.3 414 60-506 3-429 (445)
7 1pp9_B Ubiquinol-cytochrome C 100.0 9.6E-56 3.3E-60 460.2 48.5 418 61-508 21-439 (439)
8 3gwb_A Peptidase M16 inactive 100.0 1.6E-54 5.4E-59 450.3 45.7 412 60-505 10-427 (434)
9 3cx5_A Cytochrome B-C1 complex 100.0 5.5E-54 1.9E-58 445.7 43.8 415 65-513 2-427 (431)
10 3amj_B Zinc peptidase inactive 100.0 1.4E-53 4.9E-58 441.8 43.7 408 62-504 2-419 (424)
11 3d3y_A Uncharacterized protein 100.0 1.8E-49 6.1E-54 410.9 42.2 395 67-500 6-423 (425)
12 3go9_A Insulinase family prote 100.0 1.3E-49 4.6E-54 418.8 40.1 410 61-513 23-462 (492)
13 1q2l_A Protease III; hydrolase 100.0 8.6E-50 3E-54 453.5 39.4 412 59-501 16-441 (939)
14 3cww_A Insulysin, insulin-degr 100.0 2E-46 6.9E-51 427.9 37.1 408 59-499 30-455 (990)
15 2fge_A Atprep2;, zinc metallop 100.0 6.5E-45 2.2E-49 415.4 32.3 406 60-500 34-485 (995)
16 3s5m_A Falcilysin; M16 metallo 100.0 1.5E-42 5.2E-47 392.1 36.7 402 60-489 83-575 (1193)
17 3cx5_B Cytochrome B-C1 complex 100.0 1.4E-41 4.8E-46 343.1 27.9 349 73-507 1-351 (352)
18 1q2l_A Protease III; hydrolase 100.0 4.2E-35 1.4E-39 332.8 31.6 419 36-500 474-907 (939)
19 2fge_A Atprep2;, zinc metallop 100.0 3.1E-33 1.1E-37 319.0 31.9 391 67-503 556-979 (995)
20 3cww_A Insulysin, insulin-degr 100.0 1E-31 3.4E-36 306.7 34.1 428 37-503 493-937 (990)
21 3s5m_A Falcilysin; M16 metallo 100.0 7E-29 2.4E-33 280.9 23.7 404 69-513 723-1181(1193)
22 3ih6_A Putative zinc protease; 99.9 1.5E-23 5.1E-28 192.9 21.5 169 318-499 23-194 (197)
23 3ih6_A Putative zinc protease; 98.2 4.1E-05 1.4E-09 69.1 14.9 161 82-254 22-192 (197)
24 3amj_B Zinc peptidase inactive 98.2 8.4E-05 2.9E-09 75.6 18.9 176 318-513 24-208 (424)
25 3hdi_A Processing protease; CA 98.1 0.0002 6.8E-09 72.8 19.6 165 319-500 23-193 (421)
26 3cx5_B Cytochrome B-C1 complex 98.0 0.0002 6.7E-09 70.9 18.3 171 319-512 12-185 (352)
27 3eoq_A Putative zinc protease; 98.0 0.00014 4.6E-09 73.7 17.4 163 319-499 23-191 (406)
28 3cx5_A Cytochrome B-C1 complex 98.0 0.00031 1.1E-08 71.4 19.3 171 318-513 21-198 (431)
29 3gwb_A Peptidase M16 inactive 98.0 0.00011 3.7E-09 75.0 15.2 166 318-500 34-206 (434)
30 1hr6_B Beta-MPP, mitochondrial 98.0 0.00026 9E-09 72.4 18.0 166 318-500 27-198 (443)
31 1pp9_A Ubiquinol-cytochrome C 97.9 0.0005 1.7E-08 70.4 18.6 165 319-500 34-204 (446)
32 3ami_A Zinc peptidase; alpha/b 97.9 0.00047 1.6E-08 70.6 18.3 166 318-500 27-199 (445)
33 1pp9_B Ubiquinol-cytochrome C 97.8 0.001 3.4E-08 67.8 19.9 173 318-513 43-221 (439)
34 3d3y_A Uncharacterized protein 97.8 0.00037 1.3E-08 70.7 15.4 179 319-512 24-218 (425)
35 1hr6_A Alpha-MPP, mitochondria 97.7 0.00062 2.1E-08 70.4 16.4 164 319-500 26-195 (475)
36 3go9_A Insulinase family prote 95.8 0.0068 2.3E-07 62.9 5.1 160 319-499 49-220 (492)
37 2kvc_A Putative uncharacterize 27.4 61 0.0021 24.9 3.7 72 447-519 7-92 (103)
38 3lh2_S 4E10_1VI7A_S0_002_N (T8 23.3 1.5E+02 0.0051 20.9 5.2 47 123-169 19-65 (76)
No 1
>1hr6_A Alpha-MPP, mitochondrial processing peptidase alpha subunit; hxxeh zinc-binding motif, hydrolase; HET: EPE; 2.50A {Saccharomyces cerevisiae} SCOP: d.185.1.1 d.185.1.1 PDB: 1hr7_A 1hr8_A* 1hr9_A*
Probab=100.00 E-value=2.5e-62 Score=515.09 Aligned_cols=435 Identities=38% Similarity=0.660 Sum_probs=388.1
Q ss_pred CCCeEEEEcCCCCEEEEeecCCCeEEEEEEEccCCCCCCCCCCcHHHHHHHHhhcCCCCCCCHHHHHHHHHHhCCEeeEe
Q psy14217 61 DRNTQVTTLPNGLRVASENRFGSFCTIGVIIDSGSRYEQPYPSGVSHFLEKLAFNSTSEYVNKDAIAQSLEKIGGICDCL 140 (529)
Q Consensus 61 ~~~~~~~~L~NGl~v~~~~~~~~~~~i~l~~~~G~~~e~~~~~Gla~ll~~l~~~g~~~~~~~~~l~~~l~~~g~~~~~~ 140 (529)
+++++.++|+||++|++.+.+.+.+++.+++++|+++|++++.|++||++||+|+||.++ +..++.+.++.+|+.+|++
T Consensus 3 ~~~~~~~~L~NGl~v~~~~~~~~~~~~~l~~~~Gs~~e~~~~~Glah~lehm~f~Gt~~~-~~~~~~~~le~~G~~~na~ 81 (475)
T 1hr6_A 3 TDNFKLSSLANGLKVATSNTPGHFSALGLYIDAGSRFEGRNLKGCTHILDRLAFKSTEHV-EGRAMAETLELLGGNYQCT 81 (475)
T ss_dssp TTCCEEEECTTSCEEEEESCCCSSEEEEEEESCCGGGCTTTTTTHHHHHHHTTTSCBTTB-CHHHHHHHHHHTTSCEEEE
T ss_pred CCCceEEECCCCCEEEEEeCCCCEEEEEEEEccccCCCCCCCCcHHHHHHHHHhCCCCCC-CHHHHHHHHHHcCCEEEEE
Confidence 457899999999999988777799999999999999999999999999999999999997 6779999999999999999
Q ss_pred eccceEEEEEEecCCCHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHhhcCCchHHHHHHHHHHHcCCCCCCCCCC
Q psy14217 141 SSRDTFIYAASAATSGLDTVMKILGDVVLRPKFSKEEINMARQTIQFELENYQMRPEQETLLMDMIHAAAYKDNTLGLPK 220 (529)
Q Consensus 141 t~~~~~~~~~~~~~~~l~~~l~ll~~~l~~p~f~~~~~~~~k~~~~~el~~~~~~p~~~~~~~~~l~~~~~~~~~~~~~~ 220 (529)
|+.+.|.|++++++++++.+|+++.+++.+|.|++++|+++|+.+.+|+++..++| ...+.+.++..+|+++|++++.
T Consensus 82 t~~d~t~y~~~~~~~~l~~~l~ll~d~~~~p~f~~~~~~~er~~v~~e~~~~~~~p--~~~~~~~~~~~~~~~~~~~~~~ 159 (475)
T 1hr6_A 82 SSRENLMYQASVFNQDVGKMLQLMSETVRFPKITEQELQEQKLSAEYEIDEVWMKP--ELVLPELLHTAAYSGETLGSPL 159 (475)
T ss_dssp ECSSCEEEEEEECGGGHHHHHHHHHHHHHCBCCCHHHHHHHHHHHHHHHHHHTTCH--HHHHHHHHHHHHTTTSGGGSCS
T ss_pred EccCeEEEEEEecHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHhhcCH--HHHHHHHHHHHhcCCCCCCCCC
Confidence 99999999999999999999999999999999999999999999999999877776 6899999999999999999999
Q ss_pred CCCchhcCCCCHHHHHHHHHhhcCCCCeEEEEecCCHHHHHHHHHhhhccCCCccccccccccCCCCCCCCCCCcccCce
Q psy14217 221 LCPPASIGVINNNTLFTYLKNYYTPTRMVVAGIGVEHEALVEAANKYFVDKQPVWIQDKSLVLTDKPVIDTSSATYTGGI 300 (529)
Q Consensus 221 ~g~~~~l~~i~~~~l~~f~~~~~~~~~~~l~ivG~~~~~l~~~i~~~f~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 300 (529)
+|+.++|++++.++|++||++||+|+||+++|+|+++++++++++++|+.++..... +.. ..+.+.++.
T Consensus 160 ~G~~~~l~~it~~~l~~f~~~~y~p~n~~l~v~G~d~~~~~~~i~~~f~~~~~~~~~---------~~~--~~~~~~~~~ 228 (475)
T 1hr6_A 160 ICPRGLIPSISKYYLLDYRNKFYTPENTVAAFVGVPHEKALELTGKYLGDWQSTHPP---------ITK--KVAQYTGGE 228 (475)
T ss_dssp SCCGGGGGGCCHHHHHHHHHHHCCGGGEEEEEESSCHHHHHHHHHHHHTTCCCCCCC---------CCC--CCCCCCCEE
T ss_pred cCCHHHHhhcCHHHHHHHHHHhCCcccEEEEEeCCCHHHHHHHHHHHhccCCCCCCC---------CCC--CCCCCcCCe
Confidence 999999999999999999999999999999999999999999999999996543110 000 112233433
Q ss_pred eEEecCCCCCCCCCCCCcceeEEEEeccCCCCCCCchHHHHHHHhhcCCCCCCCCCCCCCcccHHHHHHhhhcCceeEEE
Q psy14217 301 VKEECNIPTFAGTSGLPELSHVVIGLEGVSHQDPDFVPACVLNILMGGGGSFSAGGPGKGMYTRLYTNVLNRHHWMFSAT 380 (529)
Q Consensus 301 ~~~~~~~~~~~g~~~~~~~~~v~i~~~~~~~~~~~~~~~~vl~~lL~~~~~f~~~~~g~g~~srL~~~lR~~~gl~Y~~~ 380 (529)
..+... +.. .+..+++++.++|+++++++++.+++.|++.+||++++|++|||||||.++||++||++.|++|+++
T Consensus 229 ~~~~~~-~~~---~~~~~~~~v~~~~~~~~~~~~d~~~l~vl~~iLg~~~~f~~gg~g~~~~s~L~~~lr~~~gl~y~v~ 304 (475)
T 1hr6_A 229 SCIPPA-PVF---GNLPELFHIQIGFEGLPIDHPDIYALATLQTLLGGGGSFSAGGPGKGMYSRLYTHVLNQYYFVENCV 304 (475)
T ss_dssp EEECCC-CCC---SSSCCCEEEEEEEECCCTTCTTHHHHHHHHHHHCEEESSCCSSTTSCTTSHHHHHTTTTCSSEEEEE
T ss_pred EEEecc-ccc---CCCccceEEEEEEecCCCCCccHHHHHHHHHHhCCCcccccCCCCCCcCCHHHHHHHHhcCCeeEEE
Confidence 333321 000 0012578999999988888899999999999999999999999999999999999999999999999
Q ss_pred EeccccCCcccEEEEEEeCCCCHHHHHHHHHHHHHHhcC----CCCHHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHH
Q psy14217 381 AYNHAYADTGLFCIHASAPPSNVKNIVDVLVKELVTMAG----PIDADELSRAKKQLQSMLLMNLEARPAVFEDVGRQVL 456 (529)
Q Consensus 381 a~~~~~~~~g~f~i~~~~~p~~~~~~~~~i~~~l~~l~~----~it~~el~~ak~~l~~~~~~~~~~~~~~~~~l~~~~l 456 (529)
+++..+.+.|.|.|++.++|+++.++++.+.++++++.+ ++|++||+++|+.++.++....+++..+++.++++.+
T Consensus 305 s~~~~~~~~g~~~i~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~t~~El~~ak~~l~~~~~~~~~~~~~~~~~~~~~~~ 384 (475)
T 1hr6_A 305 AFNHSYSDSGIFGISLSCIPQAAPQAVEVIAQQMYNTFANKDLRLTEDEVSRAKNQLKSSLLMNLESKLVELEDMGRQVL 384 (475)
T ss_dssp EEEEECSSCEEEEEEEEECGGGHHHHHHHHHHHHHTTTTCTTSCCCHHHHHHHHHHHHHHHHHHTTSHHHHHHHHHHHHH
T ss_pred EeccccCCCceEEEEEEeCHHHHHHHHHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHH
Confidence 998888888999999999999999999999999999986 5999999999999999999999999999999998766
Q ss_pred hcCCCCChhHHHHHHccCCHHHHHHHHHHhccC----------CCeEEEEcCCCCCCCHHHHHHHhh
Q psy14217 457 ATGHRKRPSTYIESIENVTEDDIRRVASRLLTS----------QPSVAARGELINFPSYEDIHSGIQ 513 (529)
Q Consensus 457 ~~~~~~~~~~~~~~i~~vT~edv~~~a~~~l~~----------~~~~~v~G~~~~ip~~~~~~~~~~ 513 (529)
..+.....+++.+.|++||++||++++++++.+ +++++++|+...+|+++++.+.+.
T Consensus 385 ~~g~~~~~~~~~~~i~~vt~~dv~~~a~~~l~~~~~~~~~~~~~~~~~v~g~~~~~~~~~~~~~~~~ 451 (475)
T 1hr6_A 385 MHGRKIPVNEMISKIEDLKPDDISRVAEMIFTGNVNNAGNGKGRATVVMQGDRGSFGDVENVLKAYG 451 (475)
T ss_dssp HHSCCCCHHHHHHHHHTCCHHHHHHHHHHHHTTCCCCTTCCCCCCEEEEESCGGGGCCHHHHHHHTT
T ss_pred hcCCCCCHHHHHHHHHcCCHHHHHHHHHHHhhhccccccccCCCcEEEEECCcccCcCHHHHHHHhc
Confidence 566665688999999999999999999999976 688999999999999999998886
No 2
>3eoq_A Putative zinc protease; two similar domains of beta(2)-alpha(2)-beta(2)-alpha(5)- beta structure, hydrolase; 2.29A {Thermus thermophilus}
Probab=100.00 E-value=9.9e-60 Score=485.41 Aligned_cols=401 Identities=21% Similarity=0.288 Sum_probs=361.9
Q ss_pred eEEEEcCCCCEEEEeecC-CCeEEEEEEEccCCCCCCCCCCcHHHHHHHHhhcCCCCCCCHHHHHHHHHHhCCEeeEeec
Q psy14217 64 TQVTTLPNGLRVASENRF-GSFCTIGVIIDSGSRYEQPYPSGVSHFLEKLAFNSTSEYVNKDAIAQSLEKIGGICDCLSS 142 (529)
Q Consensus 64 ~~~~~L~NGl~v~~~~~~-~~~~~i~l~~~~G~~~e~~~~~Gla~ll~~l~~~g~~~~~~~~~l~~~l~~~g~~~~~~t~ 142 (529)
++.++|+||++|++.+.+ .+.+++.+++++|+++|+++..|++|+++||+|+||.++ +..++.+.++.+|+.+|++|+
T Consensus 2 ~~~~~L~NGl~v~~~~~~~~~~~~~~l~~~~Gs~~e~~~~~G~ah~lehmlf~Gt~~~-~~~~~~~~l~~~G~~~na~t~ 80 (406)
T 3eoq_A 2 FREAELRNGLRVIAEVVPGARSVALGYFVKTGARDETKEESGVSHFLEHMVFKGPEDM-DALAVNRAFDRMGAQYNAFTS 80 (406)
T ss_dssp EEEEECTTSCEEEEEECTTCSCEEEEEEESCSGGGSCGGGTTHHHHHHHHHTTCCTTC-CHHHHHHHHHHTTCEEEEEEC
T ss_pred ceeEEcCCCCEEEEEECCCCCeEEEEEEEccccCCCCCCCCCHHHHHHHHHhCCCCCC-CHHHHHHHHHHhCCCccceec
Confidence 478999999999987765 489999999999999999999999999999999999998 678999999999999999999
Q ss_pred cceEEEEEEecCCCHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHhhcCCchHHHHHHHHHHHcCCCCCCCCCCCC
Q psy14217 143 RDTFIYAASAATSGLDTVMKILGDVVLRPKFSKEEINMARQTIQFELENYQMRPEQETLLMDMIHAAAYKDNTLGLPKLC 222 (529)
Q Consensus 143 ~~~~~~~~~~~~~~l~~~l~ll~~~l~~p~f~~~~~~~~k~~~~~el~~~~~~p~~~~~~~~~l~~~~~~~~~~~~~~~g 222 (529)
.+.|.|++++++++++.+|+++.+++ +|.|++++|+++|+.+.+|++...++| ...+.+.+.+.+|++||++++.+|
T Consensus 81 ~d~t~y~~~~~~~~l~~~l~ll~d~~-~p~f~~~~~~~ek~~v~~e~~~~~~~p--~~~~~~~~~~~~~~~~p~~~~~~G 157 (406)
T 3eoq_A 81 EEATVYYGAVLPEFAYDLLGLFAKLL-RPALREEDFQTEKLVILEEIARYQDRP--GFMAYEWARARFFQGHPLGNSVLG 157 (406)
T ss_dssp SSCEEEEEEECGGGHHHHHHHHHHHT-SCCCCHHHHHHHHHHHHHHHHHHHHCH--HHHHHHHHHHHHHTTCGGGCCSSC
T ss_pred CCeEEEEEEecHHHHHHHHHHHHHHh-cCCCCHHHHHHHHHHHHHHHHHhcCCH--HHHHHHHHHHHhcCCCCCCCCCcC
Confidence 99999999999999999999999999 999999999999999999999888777 689999999999999999999999
Q ss_pred CchhcCCCCHHHHHHHHHhhcCCCCeEEEEec-CCHHHHHHHHHhhhccCCCccccccccccCCCCCCCCCCCcccCcee
Q psy14217 223 PPASIGVINNNTLFTYLKNYYTPTRMVVAGIG-VEHEALVEAANKYFVDKQPVWIQDKSLVLTDKPVIDTSSATYTGGIV 301 (529)
Q Consensus 223 ~~~~l~~i~~~~l~~f~~~~~~~~~~~l~ivG-~~~~~l~~~i~~~f~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 301 (529)
+.++|++++.++|++||++||+|+||+++|+| ++++++.++++++|+.+++... .+.. .+....++..
T Consensus 158 ~~~~i~~~t~~~l~~f~~~~y~p~n~~l~v~Gd~~~~~~~~~i~~~f~~~~~~~~---------~~~~--~~~~~~~~~~ 226 (406)
T 3eoq_A 158 TRESITALTREGMAAYHRRRYLPKNMVLAATGRVDFDRLLAEAERLTEAWPEGEA---------ERAY--PPLTPAFGVE 226 (406)
T ss_dssp CHHHHHHCCHHHHHHHHHHHCCGGGEEEEEEESCCHHHHHHHHHHHHTTCCCCCC---------CCCC--CCCCCCCEEE
T ss_pred CHHHHhhCCHHHHHHHHHHhCCccCEEEEEEcCCCHHHHHHHHHHHhcCCCCCCC---------CCCC--CCCCCCCceE
Confidence 99999999999999999999999999999999 9999999999999999653210 0111 1111133344
Q ss_pred EEecCCCCCCCCCCCCcceeEEEEeccCCCCCCCchHHHHHHHhhcCCCCCCCCCCCCCcccHHHHHHhhhcCceeEEEE
Q psy14217 302 KEECNIPTFAGTSGLPELSHVVIGLEGVSHQDPDFVPACVLNILMGGGGSFSAGGPGKGMYTRLYTNVLNRHHWMFSATA 381 (529)
Q Consensus 302 ~~~~~~~~~~g~~~~~~~~~v~i~~~~~~~~~~~~~~~~vl~~lL~~~~~f~~~~~g~g~~srL~~~lR~~~gl~Y~~~a 381 (529)
.+..+. .+++++.++|+++++++++.+++.|++.+|||+. +||||++||+ .|++|++++
T Consensus 227 ~~~~~~---------~~q~~~~~~~~~~~~~~~d~~~l~vl~~iLgg~~-----------~srL~~~lre-~gl~y~~~s 285 (406)
T 3eoq_A 227 ERPYEK---------ARALYLVALFPGVAYQEEARFPGQVLAHLLGEEG-----------SGRLHFALVD-KGLAEVASF 285 (406)
T ss_dssp EEECTT---------CSSEEEEEEEECCCTTCTTHHHHHHHHHHHHCTT-----------TSHHHHHTTT-TTSEEEEEE
T ss_pred EEecCC---------ccceEEEEEecCCCCCCchHHHHHHHHHHhCCCc-----------chHHHHHHHH-cCCeeEEEE
Confidence 444332 1579999999999999999999999999999753 3999999999 899999999
Q ss_pred eccccCCcccEEEEEEeCCCCHHHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHhcCC
Q psy14217 382 YNHAYADTGLFCIHASAPPSNVKNIVDVLVKELVTMAG-PIDADELSRAKKQLQSMLLMNLEARPAVFEDVGRQVLATGH 460 (529)
Q Consensus 382 ~~~~~~~~g~f~i~~~~~p~~~~~~~~~i~~~l~~l~~-~it~~el~~ak~~l~~~~~~~~~~~~~~~~~l~~~~l~~~~ 460 (529)
++..+.+.|.|.|++.++|++.+++++.+.++|+++++ +++++||+++|+.+++++....+++..++..++...+..+.
T Consensus 286 ~~~~~~~~g~~~i~~~~~~~~~~~~~~~i~~~l~~l~~~~~t~~el~~ak~~l~~~~~~~~e~~~~~~~~~~~~~~~~~~ 365 (406)
T 3eoq_A 286 GLEEADRAGTFHAYVQADPARKGEVLAVLQEELDRLGREGVGEEEVERAKTPLATGLVFAGETPMQRLFHLGMEYLYTGR 365 (406)
T ss_dssp EEEECSSCEEEEEEEEECGGGHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHTTSHHHHHHHHHHHHHHHSS
T ss_pred EecccCCceEEEEEEEeCcchHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCC
Confidence 99888889999999999999999999999999999987 89999999999999999999999999999999988887888
Q ss_pred CCChhHHHHHHccCCHHHHHHHHHHhccCCCeEEEEcCCC
Q psy14217 461 RKRPSTYIESIENVTEDDIRRVASRLLTSQPSVAARGELI 500 (529)
Q Consensus 461 ~~~~~~~~~~i~~vT~edv~~~a~~~l~~~~~~~v~G~~~ 500 (529)
....+++.+.|++||++||++++++|+.++..++++||..
T Consensus 366 ~~~~~~~~~~i~~vt~~dv~~~a~~~l~~~~~~~vvGp~~ 405 (406)
T 3eoq_A 366 YLSLEEVKARVQRVTSREVNALLERGFLEKGLYYLVLPHG 405 (406)
T ss_dssp CCCHHHHHHHHHHCCHHHHHHHHHTTTTTSCEEEEEECCC
T ss_pred CCCHHHHHHHHHhCCHHHHHHHHHHhcCcccEEEEECCCC
Confidence 8899999999999999999999999999865599999864
No 3
>3hdi_A Processing protease; CAGE structure, M16B peptidase, metallopeptidase, peptidasome, protease, hydrolase; 2.70A {Bacillus halodurans c-125}
Probab=100.00 E-value=2.1e-59 Score=485.24 Aligned_cols=407 Identities=24% Similarity=0.433 Sum_probs=365.9
Q ss_pred eEEEEcCCCCEEEEeecC-CCeEEEEEEEccCCCCCCCCCCcHHHHHHHHhhcCCCCCCCHHHHHHHHHHhCCEeeEeec
Q psy14217 64 TQVTTLPNGLRVASENRF-GSFCTIGVIIDSGSRYEQPYPSGVSHFLEKLAFNSTSEYVNKDAIAQSLEKIGGICDCLSS 142 (529)
Q Consensus 64 ~~~~~L~NGl~v~~~~~~-~~~~~i~l~~~~G~~~e~~~~~Gla~ll~~l~~~g~~~~~~~~~l~~~l~~~g~~~~~~t~ 142 (529)
++.++|+||++|++.+.+ .+.+++.+++++|+++|+++..|++|+++||+|.||.++ +..++.+.++.+|+.+|++|+
T Consensus 2 ~~~~~L~NGl~v~~~~~~~~~~~~~~l~~~~Gs~~e~~~~~G~ah~leh~lf~gt~~~-~~~~~~~~l~~~G~~~na~t~ 80 (421)
T 3hdi_A 2 INTMTLDNGVRIITEKMSTVRSVSIGIWVGTGSRYESAEENGISHFLEHMFFKGTNTR-SAQEIAEFFDSIGGQVNAFTS 80 (421)
T ss_dssp CEEEECTTSCEEEEEECTTCSEEEEEEEESCCGGGCCGGGTTHHHHHHHHTTSBBSSS-BHHHHHHHHHTTTSCEEEEEC
T ss_pred ceEEEcCCCCEEEEEECCCCCEEEEEEEEccccCCCCCCCCcHHHHHHHHhcCCCCCC-CHHHHHHHHHHhCCceeeeec
Confidence 578999999999987765 489999999999999999999999999999999999997 678999999999999999999
Q ss_pred cceEEEEEEecCCCHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHhhcCCchHHHHHHHHHHHcCCCCCCCCCCCC
Q psy14217 143 RDTFIYAASAATSGLDTVMKILGDVVLRPKFSKEEINMARQTIQFELENYQMRPEQETLLMDMIHAAAYKDNTLGLPKLC 222 (529)
Q Consensus 143 ~~~~~~~~~~~~~~l~~~l~ll~~~l~~p~f~~~~~~~~k~~~~~el~~~~~~p~~~~~~~~~l~~~~~~~~~~~~~~~g 222 (529)
.+.|.|++++++++++.+|+++.+++.+|.|++++++++|+.+.+|++...++| ...+.+.+.+.+|++||++++.+|
T Consensus 81 ~d~t~~~~~~~~~~l~~~l~ll~d~~~~p~f~~~~~~~ek~~v~~e~~~~~~~p--~~~~~~~~~~~~~~~~p~~~~~~G 158 (421)
T 3hdi_A 81 KEYTCYYAKVLDDHAGQAIDTLSDMFFHSTFQKEELEKERKVVFEEIKMVDDTP--DDIVHDLLSSATYGKHSLGYPILG 158 (421)
T ss_dssp SSCEEEEEEEEGGGHHHHHHHHHHHHHSBCCCHHHHHHHHHHHHHHHHHHHTCH--HHHHHHHHHHHHHTTSGGGSCTTC
T ss_pred cceEEEEEEecHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHhhCCH--HHHHHHHHHHHhcCCCCCCCCCcC
Confidence 999999999999999999999999999999999999999999999999988877 688999999999999999999999
Q ss_pred CchhcCCCCHHHHHHHHHhhcCCCCeEEEEec-CCHHHHHHHHHhhhccCCCccccccccccCCCCCCCCCCCcccCcee
Q psy14217 223 PPASIGVINNNTLFTYLKNYYTPTRMVVAGIG-VEHEALVEAANKYFVDKQPVWIQDKSLVLTDKPVIDTSSATYTGGIV 301 (529)
Q Consensus 223 ~~~~l~~i~~~~l~~f~~~~~~~~~~~l~ivG-~~~~~l~~~i~~~f~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 301 (529)
+.++|++++.++|++||++||+|+||+++++| ++ +++.++++++|+.+|..... +.. ..+.+.+...
T Consensus 159 ~~~~l~~it~~~l~~f~~~~y~p~n~~l~v~Gd~~-~~~~~~v~~~f~~~~~~~~~---------~~~--~~~~~~~~~~ 226 (421)
T 3hdi_A 159 TVETLNSFNEGMLRHYMDRFYTGDYVVISVAGNVH-DELIDKIKETFSQVKPTTYN---------YQG--EKPMFLPNRI 226 (421)
T ss_dssp CHHHHHHCCHHHHHHHHHHHSSTTTEEEEEEESCC-HHHHHHHHHHTTSSCCCCCC---------CCC--CCCCCCCCEE
T ss_pred CHHHHHhCCHHHHHHHHHHhcCcccEEEEEEeCCC-HHHHHHHHHHhcCCCCCCCC---------CCC--CCCCCCCceE
Confidence 99999999999999999999999999999999 99 99999999999996543111 111 1122223333
Q ss_pred EEecCCCCCCCCCCCCcceeEEEEeccCCCCCCCchHHHHHHHhhcCCCCCCCCCCCCCcccHHHHHHhhhcCceeEEEE
Q psy14217 302 KEECNIPTFAGTSGLPELSHVVIGLEGVSHQDPDFVPACVLNILMGGGGSFSAGGPGKGMYTRLYTNVLNRHHWMFSATA 381 (529)
Q Consensus 302 ~~~~~~~~~~g~~~~~~~~~v~i~~~~~~~~~~~~~~~~vl~~lL~~~~~f~~~~~g~g~~srL~~~lR~~~gl~Y~~~a 381 (529)
....+. +++++.++|+++.+++++.+++.|++.+|||+. .||||++||++.|++|++++
T Consensus 227 ~~~~~~----------~q~~v~~~~~~~~~~~~d~~~l~vl~~iLgg~~-----------~srL~~~lRe~~glay~~~s 285 (421)
T 3hdi_A 227 VRKKET----------EQAHLCLGYPGLPIGDKDVYALVLLNNVLGGSM-----------SSRLFQDIREKRGLCYSVFS 285 (421)
T ss_dssp EEECCC----------SEEEEEEEEECCCTTCTTHHHHHHHHHHHTSSS-----------SSHHHHHHTTTTCCCSCEEE
T ss_pred EecCCC----------CceEEEEEEecCCCCCchHHHHHHHHHHhCCCc-----------ccHHHHHHHHhcCCEEEEEE
Confidence 333332 578999999999998999999999999999753 39999999999999999999
Q ss_pred eccccCCcccEEEEEEeCCCCHHHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHhcCC
Q psy14217 382 YNHAYADTGLFCIHASAPPSNVKNIVDVLVKELVTMAG-PIDADELSRAKKQLQSMLLMNLEARPAVFEDVGRQVLATGH 460 (529)
Q Consensus 382 ~~~~~~~~g~f~i~~~~~p~~~~~~~~~i~~~l~~l~~-~it~~el~~ak~~l~~~~~~~~~~~~~~~~~l~~~~l~~~~ 460 (529)
++..+.+.|.|.+++.++|++++++++.+.++++++++ +++++||+++|+.+++++....+++..++..++...+..+.
T Consensus 286 ~~~~~~~~g~~~i~~~~~~~~~~~~~~~i~~~l~~l~~~~~t~~el~~ak~~l~~~~~~~~e~~~~~~~~~~~~~~~~~~ 365 (421)
T 3hdi_A 286 YHSSFRDSGMLTIYAGTGHDQLDDLVYSIQETTSALAEKGLTEKELENGKEQLKGSLMLSLESTNSRMSRNGKNELLLKK 365 (421)
T ss_dssp EEEECSSCEEEEEEEEEEGGGHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSC
T ss_pred eecccCCCceEEEEEEeCHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHccCCHHHHHHHHHHHHHhcCC
Confidence 98888889999999999999999999999999999976 89999999999999999999999999999988877777777
Q ss_pred CCChhHHHHHHccCCHHHHHHHHHHhccCCCeEEEEcCCCCCCCHH
Q psy14217 461 RKRPSTYIESIENVTEDDIRRVASRLLTSQPSVAARGELINFPSYE 506 (529)
Q Consensus 461 ~~~~~~~~~~i~~vT~edv~~~a~~~l~~~~~~~v~G~~~~ip~~~ 506 (529)
....+++.+.|++||++||++++++++..+.+++++|+...+|++.
T Consensus 366 ~~~~~~~~~~i~~vt~~dv~~~a~~~~~~~~~~~vvgp~~~ip~~~ 411 (421)
T 3hdi_A 366 HRSLDEMIEQINAVQKQDVSRLAKILLSASPSISLINANGELPKAL 411 (421)
T ss_dssp CCCHHHHHHHHHHCCHHHHHHHHHHHTTSCCEEEEEESSCSCCSCS
T ss_pred CCCHHHHHHHHHcCCHHHHHHHHHHHcccCcEEEEECchhcCcchh
Confidence 7888999999999999999999999993368999999999999753
No 4
>1pp9_A Ubiquinol-cytochrome C reductase complex core Pro mitochondrial; cytochrome BC1, membrane protein, heme protein, rieske iron protein, cytochrome B, complex III; HET: BHG HEM HEC SMA UQ CDL PEE; 2.10A {Bos taurus} SCOP: d.185.1.1 d.185.1.1 PDB: 1bgy_A* 1be3_A* 1l0n_A* 1ntk_A* 1ntm_A* 1ntz_A* 1nu1_A* 1l0l_A* 1ppj_A* 1sqq_A* 1sqv_A* 1sqx_A* 2a06_A* 2fyu_A* 2ybb_A* 1sqb_A* 1sqp_A* 1qcr_A* 1bcc_A* 2bcc_A* ...
Probab=100.00 E-value=2.2e-58 Score=481.27 Aligned_cols=431 Identities=29% Similarity=0.440 Sum_probs=376.8
Q ss_pred CCCCeEEEEcCCCCEEEEeecCCCeEEEEEEEccCCCCCCCCCCcHHHHHHHHhhcCCCCCCCHHHHHHHHHHhCCEeeE
Q psy14217 60 NDRNTQVTTLPNGLRVASENRFGSFCTIGVIIDSGSRYEQPYPSGVSHFLEKLAFNSTSEYVNKDAIAQSLEKIGGICDC 139 (529)
Q Consensus 60 ~~~~~~~~~L~NGl~v~~~~~~~~~~~i~l~~~~G~~~e~~~~~Gla~ll~~l~~~g~~~~~~~~~l~~~l~~~g~~~~~ 139 (529)
..+.++.++|+||++|++.+.+.+.+++.+++++|++.|+.+..|++|+++||+|.||.+++ ..++.+.++.+|+.+|+
T Consensus 10 ~~~~~~~~~L~NGl~v~~~~~~~~~~~~~l~~~~Gs~~e~~~~~Glahllehmlf~GT~~~~-~~~~~~~l~~~G~~~na 88 (446)
T 1pp9_A 10 SVPETQVSQLDNGLRVASEQSSQPTCTVGVWIDAGSRYESEKNNGAGYFVEHLAFKGTKNRP-GNALEKEVESMGAHLNA 88 (446)
T ss_dssp TSCCCEEEECTTCCEEEEEECSCSEEEEEEEESCSGGGCCTTTTTHHHHHHHHTTSCBSSST-TTHHHHHHHHTTCEEEE
T ss_pred cccCceEEECCCCCEEEEEeCCCCEEEEEEEEccccCCCCCCCCcHHHHHHHHhcCCCCCCC-HHHHHHHHHHcCCEEEE
Confidence 34677999999999999877777899999999999999999999999999999999999984 55799999999999999
Q ss_pred eeccceEEEEEEecCCCHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHhhcCCchHHHHHHHHHHHcCCCCCCCCC
Q psy14217 140 LSSRDTFIYAASAATSGLDTVMKILGDVVLRPKFSKEEINMARQTIQFELENYQMRPEQETLLMDMIHAAAYKDNTLGLP 219 (529)
Q Consensus 140 ~t~~~~~~~~~~~~~~~l~~~l~ll~~~l~~p~f~~~~~~~~k~~~~~el~~~~~~p~~~~~~~~~l~~~~~~~~~~~~~ 219 (529)
+|+.+.|.|++++++++++.+|+++.+++.+|.|++++|+++|+.+.+|++...++| ...+.+.+.+.+|++||++++
T Consensus 89 ~t~~d~t~~~~~~~~~~l~~~l~ll~d~~~~p~f~~~~~~~ek~~v~~e~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~ 166 (446)
T 1pp9_A 89 YSTREHTAYYIKALSKDLPKAVELLADIVQNCSLEDSQIEKERDVILQELQENDTSM--RDVVFNYLHATAFQGTPLAQS 166 (446)
T ss_dssp EECSSCEEEEEEEEGGGHHHHHHHHHHHHHHBCCCHHHHHHHHHHHHHHHHHHTTCH--HHHHHHHHHHHHTTTSGGGSC
T ss_pred EEcCCeEEEEEEecHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHhhhcCH--HHHHHHHHHHHhcCCCCCCCC
Confidence 999999999999999999999999999999999999999999999999999887776 678899999999999999999
Q ss_pred CCCCchhcCCCCHHHHHHHHHhhcCCCCeEEEEec-CCHHHHHHHHHhhhccCCCccccccccccCCCCCCCCCCCcccC
Q psy14217 220 KLCPPASIGVINNNTLFTYLKNYYTPTRMVVAGIG-VEHEALVEAANKYFVDKQPVWIQDKSLVLTDKPVIDTSSATYTG 298 (529)
Q Consensus 220 ~~g~~~~l~~i~~~~l~~f~~~~~~~~~~~l~ivG-~~~~~l~~~i~~~f~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 298 (529)
.+|+.++|++++.++|++||++||+|+||+++++| ++++++.++++++|+.++...... .+..+ ..+.+.+
T Consensus 167 ~~G~~~~l~~~~~~~l~~f~~~~y~p~n~~l~v~Gd~~~~~~~~~i~~~f~~~~~~~~~~-------~~~~~-~~~~~~~ 238 (446)
T 1pp9_A 167 VEGPSENVRKLSRADLTEYLSRHYKAPRMVLAAAGGLEHRQLLDLAQKHFSGLSGTYDED-------AVPTL-SPCRFTG 238 (446)
T ss_dssp SSCCHHHHHHCCHHHHHHHHHHHCCGGGEEEEEEESCCHHHHHHHHHHHHTTSCSCCCSS-------CCCCC-CCCCCCC
T ss_pred CcCCHHHHHhCCHHHHHHHHHhccCCCCEEEEEEcCCCHHHHHHHHHHHhccCCCCCCCC-------ccccC-CCCCCCC
Confidence 99999999999999999999999999999999999 999999999999999966431110 01110 0122233
Q ss_pred ceeEEecCCCCCCCCCCCCcceeEEEEeccCCCCCCCchHHHHHHHhhcCCCCCCCCCCCCCcccHHHHHHhhhcCceeE
Q psy14217 299 GIVKEECNIPTFAGTSGLPELSHVVIGLEGVSHQDPDFVPACVLNILMGGGGSFSAGGPGKGMYTRLYTNVLNRHHWMFS 378 (529)
Q Consensus 299 ~~~~~~~~~~~~~g~~~~~~~~~v~i~~~~~~~~~~~~~~~~vl~~lL~~~~~f~~~~~g~g~~srL~~~lR~~~gl~Y~ 378 (529)
....+.... .+++++.++|+++++++++..++.|++.+||++.. +.| +|+|++||||++||+ .|++|+
T Consensus 239 ~~~~~~~~~---------~~~~~v~~~~~~~~~~~~d~~al~vl~~iLg~~~~-~~~-~g~~~~srL~~~lr~-~glay~ 306 (446)
T 1pp9_A 239 SQICHREDG---------LPLAHVAIAVEGPGWAHPDNVALQVANAIIGHYDC-TYG-GGAHLSSPLASIAAT-NKLCQS 306 (446)
T ss_dssp EEEEEEETT---------SSSEEEEEEEEECCTTCTHHHHHHHHHHHHCEEET-TCS-CGGGCSSHHHHHHHH-HTCCSE
T ss_pred ceEEEecCC---------ccceEEEEEEecCCCCCccHHHHHHHHHHhCCCcc-cCC-CCCCCCCHHHHHHHh-cCCeEE
Confidence 333322211 15789999999998888999999999999986433 223 567889999999996 599999
Q ss_pred EEEeccccCCcccEEEEEEeCCCCHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHhc
Q psy14217 379 ATAYNHAYADTGLFCIHASAPPSNVKNIVDVLVKELVTMAGPIDADELSRAKKQLQSMLLMNLEARPAVFEDVGRQVLAT 458 (529)
Q Consensus 379 ~~a~~~~~~~~g~f~i~~~~~p~~~~~~~~~i~~~l~~l~~~it~~el~~ak~~l~~~~~~~~~~~~~~~~~l~~~~l~~ 458 (529)
+++++..+.+.|.|.+++.++|++++++++.+.+++++++++++++||+++|+.+++++....+++..+++.++.+.+..
T Consensus 307 ~~s~~~~~~~~g~~~i~~~~~~~~~~~~~~~i~~~l~~l~~~~t~~el~~ak~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 386 (446)
T 1pp9_A 307 FQTFNICYADTGLLGAHFVCDHMSIDDMMFVLQGQWMRLCTSATESEVLRGKNLLRNALVSHLDGTTPVCEDIGRSLLTY 386 (446)
T ss_dssp EEEEEEECSSCEEEEEEEEECTTSHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHSCSHHHHHHHHHHHHHHT
T ss_pred EEEecccCCCCeEEEEEEEECHHHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHc
Confidence 99988877788999999999999999999999999999976899999999999999999999999998888888776556
Q ss_pred CCCCChhHHHHHHccCCHHHHHHHHHHhccC-CCeEEEEcCCCCCCCHHHHHHHhh
Q psy14217 459 GHRKRPSTYIESIENVTEDDIRRVASRLLTS-QPSVAARGELINFPSYEDIHSGIQ 513 (529)
Q Consensus 459 ~~~~~~~~~~~~i~~vT~edv~~~a~~~l~~-~~~~~v~G~~~~ip~~~~~~~~~~ 513 (529)
+.....+++.+.|++||++||++++++++.+ +.+++++|+...+|.++++.+.+.
T Consensus 387 g~~~~~~~~~~~i~~vt~edv~~~a~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~ 442 (446)
T 1pp9_A 387 GRRIPLAEWESRIAEVDARVVREVCSKYFYDQCPAVAGFGPIEQLPDYNRIRSGMF 442 (446)
T ss_dssp SSCCCHHHHHHHHHTCCHHHHHHHHHHHTTTCCCEEEEEESCTTSCCHHHHHHTTC
T ss_pred CCCCCHHHHHHHHHcCCHHHHHHHHHHHcCCCCcEEEEECCcccCcCHHHHHhhHH
Confidence 6666688899999999999999999999986 789999999999999999987653
No 5
>1hr6_B Beta-MPP, mitochondrial processing peptidase beta subunit; hxxeh zinc-binding motif, hydrolase; HET: EPE; 2.50A {Saccharomyces cerevisiae} SCOP: d.185.1.1 d.185.1.1 PDB: 1hr7_B 1hr8_B* 1hr9_B*
Probab=100.00 E-value=9.2e-58 Score=476.10 Aligned_cols=433 Identities=30% Similarity=0.443 Sum_probs=377.0
Q ss_pred CCCeEEEEcCCCCEEEEeecCC-CeEEEEEEEccCCCCCCCCCCcHHHHHHHHhhcCCCCCCCHHHHHHHHHHhCCEeeE
Q psy14217 61 DRNTQVTTLPNGLRVASENRFG-SFCTIGVIIDSGSRYEQPYPSGVSHFLEKLAFNSTSEYVNKDAIAQSLEKIGGICDC 139 (529)
Q Consensus 61 ~~~~~~~~L~NGl~v~~~~~~~-~~~~i~l~~~~G~~~e~~~~~Gla~ll~~l~~~g~~~~~~~~~l~~~l~~~g~~~~~ 139 (529)
.++++.++|+||++|++.+.+. +.+++.+++++|++.|+.+..|++|+++||+|.||.++ +..++.+.++.+|+.+|+
T Consensus 4 ~~~~~~~~L~NGl~v~~~~~~~~~~~~~~~~~~~Gs~~e~~~~~G~ah~le~~~~~Gt~~~-~~~~l~~~l~~~g~~~na 82 (443)
T 1hr6_B 4 IPGTRTSKLPNGLTIATEYIPNTSSATVGIFVDAGSRAENVKNNGTAHFLEHLAFKGTQNR-PQQGIELEIENIGSHLNA 82 (443)
T ss_dssp -CCCEEEECTTSCEEEEEECSSCSEEEEEEEEECSGGGCCTTTTTHHHHHHHHTTSBBSSC-BHHHHHHHHHHTTCEEEE
T ss_pred CCCceEEECCCCCEEEEEECCCCCEEEEEEEEccccCCCCCCCCcHHHHHHHHhhcCCCCC-CHHHHHHHHHHcCCeEEE
Confidence 3567899999999999877665 58999999999999999999999999999999999997 667899999999999999
Q ss_pred eeccceEEEEEEecCCCHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHhhcCCchHHHHHHHHHHHcCCCCCCCCC
Q psy14217 140 LSSRDTFIYAASAATSGLDTVMKILGDVVLRPKFSKEEINMARQTIQFELENYQMRPEQETLLMDMIHAAAYKDNTLGLP 219 (529)
Q Consensus 140 ~t~~~~~~~~~~~~~~~l~~~l~ll~~~l~~p~f~~~~~~~~k~~~~~el~~~~~~p~~~~~~~~~l~~~~~~~~~~~~~ 219 (529)
+|+.+.|.|++++++++++.+|+++.+++.+|.|++++|+++|+.+.+|++...++| ...+.+.+.+.+|++||++++
T Consensus 83 ~t~~~~t~~~~~~~~~~l~~~l~ll~d~~~~p~f~~~~~~~e~~~v~~e~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~ 160 (443)
T 1hr6_B 83 YTSRENTVYYAKSLQEDIPKAVDILSDILTKSVLDNSAIERERDVIIRESEEVDKMY--DEVVFDHLHEITYKDQPLGRT 160 (443)
T ss_dssp EECSSEEEEEEEEEGGGHHHHHHHHHHHHHSBCCCHHHHHHHHHHHHHHHHHHTTCH--HHHHHHHHHHHHTTTSGGGSC
T ss_pred EECCCeEEEEEEecHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHhhhCCh--HHHHHHHHHHHhcCCCCCCCC
Confidence 999999999999999999999999999999999999999999999999999887776 678899999999999999998
Q ss_pred CCCCchhcCCCCHHHHHHHHHhhcCCCCeEEEEec-CCHHHHHHHHHhhhccCCCccccccccccCCCCCCCCCCCcccC
Q psy14217 220 KLCPPASIGVINNNTLFTYLKNYYTPTRMVVAGIG-VEHEALVEAANKYFVDKQPVWIQDKSLVLTDKPVIDTSSATYTG 298 (529)
Q Consensus 220 ~~g~~~~l~~i~~~~l~~f~~~~~~~~~~~l~ivG-~~~~~l~~~i~~~f~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 298 (529)
.+|+.++|++++.++|++||++||+|+||+++++| ++++++.++++++|+.+|....... .+......+.+.+
T Consensus 161 ~~g~~~~i~~~~~~~l~~f~~~~y~~~n~~l~v~Gd~~~~~~~~~i~~~f~~~~~~~~~~~------~~~~~~~~~~~~~ 234 (443)
T 1hr6_B 161 ILGPIKNIKSITRTDLKDYITKNYKGDRMVLAGAGAVDHEKLVQYAQKYFGHVPKSESPVP------LGSPRGPLPVFCR 234 (443)
T ss_dssp SSCCHHHHHHCCHHHHHHHHHHHCCGGGEEEEEEESCCHHHHHHHHHHHHTTSCCCSSCCC------TTSCCSSCCCCCC
T ss_pred CcCCHHHHhhCCHHHHHHHHHhcCcCCCEEEEEEcCCCHHHHHHHHHHHhcCCCCCCCCCC------cccccCCCCCCCC
Confidence 89999999999999999999999999999999999 9999999999999999764311100 0000000112233
Q ss_pred ceeEEecCCCCCCCCCCCCcceeEEEEeccCCCCCCCchHHHHHHHhhcCCCCCCCCCCCCCcccHHHHHHhhhcCceeE
Q psy14217 299 GIVKEECNIPTFAGTSGLPELSHVVIGLEGVSHQDPDFVPACVLNILMGGGGSFSAGGPGKGMYTRLYTNVLNRHHWMFS 378 (529)
Q Consensus 299 ~~~~~~~~~~~~~g~~~~~~~~~v~i~~~~~~~~~~~~~~~~vl~~lL~~~~~f~~~~~g~g~~srL~~~lR~~~gl~Y~ 378 (529)
....+.... .+++++.++|+++++++++..++.|++.+||++. ...|+|+|+.+|||++||++.|++|+
T Consensus 235 ~~~~~~~~~---------~~~~~v~~~~~~~~~~~~~~~~l~vl~~iLg~~~--r~~~~g~~~~s~L~~~lre~~glay~ 303 (443)
T 1hr6_B 235 GERFIKENT---------LPTTHIAIALEGVSWSAPDYFVALATQAIVGNWD--RAIGTGTNSPSPLAVAASQNGSLANS 303 (443)
T ss_dssp EEEEEECTT---------CSEEEEEEEEECCCTTCTTHHHHHHHHHHHCEEE--TTTBCSSSSCCHHHHHHHSTTCSCSE
T ss_pred CeEEeccCC---------ccceEEEEEEecCCCCCccHHHHHHHHHHhCCCc--ccCCCCCCcccHHHHHHHHHcCCeEE
Confidence 333332211 1578999999999898999999999999998643 12345778899999999999999999
Q ss_pred EEEeccccCCcccEEEEEEeC--CCCHHHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHH
Q psy14217 379 ATAYNHAYADTGLFCIHASAP--PSNVKNIVDVLVKELVTMAG-PIDADELSRAKKQLQSMLLMNLEARPAVFEDVGRQV 455 (529)
Q Consensus 379 ~~a~~~~~~~~g~f~i~~~~~--p~~~~~~~~~i~~~l~~l~~-~it~~el~~ak~~l~~~~~~~~~~~~~~~~~l~~~~ 455 (529)
+++++..+.+.|.|.+++.++ |++++++++.+.++++++++ +++++||+++|+.++.++....+++..+++.++...
T Consensus 304 ~~~~~~~~~~~g~~~i~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~t~~el~~ak~~~~~~~~~~~~~~~~~~~~~~~~~ 383 (443)
T 1hr6_B 304 YMSFSTSYADSGLWGMYIVTDSNEHNVRLIVNEILKEWKRIKSGKISDAEVNRAKAQLKAALLLSLDGSTAIVEDIGRQV 383 (443)
T ss_dssp EEEEEEECSSCEEEEEEEEEETTTCCHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHTTCCSHHHHHHHHHHHH
T ss_pred EEeeecCCCCceEEEEEEEecCChhHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHccCCHHHHHHHHHHHH
Confidence 999888878889999999999 99999999999999999987 699999999999999999999999999998888776
Q ss_pred HhcCCCCChhHHHHHHccCCHHHHHHHHHHhccC-CCeEEEEcCCCCCCCHHHHHHHhh
Q psy14217 456 LATGHRKRPSTYIESIENVTEDDIRRVASRLLTS-QPSVAARGELINFPSYEDIHSGIQ 513 (529)
Q Consensus 456 l~~~~~~~~~~~~~~i~~vT~edv~~~a~~~l~~-~~~~~v~G~~~~ip~~~~~~~~~~ 513 (529)
+..+.....+++.+.|++||++||++++++|+.+ +.+++++|+...+|++++|.+.++
T Consensus 384 ~~~g~~~~~~~~~~~i~~vt~~dv~~~a~~~l~~~~~~~~v~g~~~~~~~~~~~~~~~~ 442 (443)
T 1hr6_B 384 VTTGKRLSPEEVFEQVDKITKDDIIMWANYRLQNKPVSMVALGNTSTVPNVSYIEEKLN 442 (443)
T ss_dssp HHHSSCCCHHHHHHHHHTCCHHHHHHHHHHHSSSCCEEEEEEECGGGCCCHHHHHHHHH
T ss_pred HhcCCcCCHHHHHHHHHhCCHHHHHHHHHHHhccCCcEEEEECCcccCccHHHHHHHhc
Confidence 5556555578899999999999999999999986 688999999999999999988764
No 6
>3ami_A Zinc peptidase; alpha/beta, zinc binding, hydrolase; 2.40A {Sphingomonas} PDB: 3amj_C
Probab=100.00 E-value=3.8e-57 Score=471.79 Aligned_cols=414 Identities=21% Similarity=0.251 Sum_probs=358.4
Q ss_pred CCCCeEEEEcCCCCEEEEeec-CCCeEEEEEEEccCCCCCCCCCCcHHHHHHHHhhcCCCCCCCHHHHHHHHHHhCCEee
Q psy14217 60 NDRNTQVTTLPNGLRVASENR-FGSFCTIGVIIDSGSRYEQPYPSGVSHFLEKLAFNSTSEYVNKDAIAQSLEKIGGICD 138 (529)
Q Consensus 60 ~~~~~~~~~L~NGl~v~~~~~-~~~~~~i~l~~~~G~~~e~~~~~Gla~ll~~l~~~g~~~~~~~~~l~~~l~~~g~~~~ 138 (529)
+.++++.++|+||++|++.+. ..+.+.+.+++++|++.|+.+..|++|+++||+|+||.+++. .++.+.++.+|+.+|
T Consensus 3 ~~~~~~~~~L~NGl~v~~~~~~~~~~v~~~~~~~~Gs~~e~~~~~Glah~lehmlf~Gt~~~~~-~~l~~~l~~~g~~~n 81 (445)
T 3ami_A 3 PAASTFETTLPNGLKVVVREDHRAPTLVHMVWYRVGSMDETTGTTGVAHALEHMMFKGTKDVGP-GEFSKRVAAMGGRDN 81 (445)
T ss_dssp CGGGEEEEECTTSCEEEEEECTTSSEEEEEEEESCCGGGCCTTCTTHHHHHHHHTTSCBSSSCT-THHHHHHHHTTCEEE
T ss_pred cCcCcEEEECCCCCEEEEEECCCCCeEEEEEEEeeccCCCCCCCccHHHHHHHhhcCCCCCCCH-HHHHHHHHHhCCccc
Confidence 346789999999999998665 458999999999999999999999999999999999999865 689999999999999
Q ss_pred EeeccceEEEEEEecCCCHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHHH-HhhcCCchHHHHHHHHHHHcCCCCCCC
Q psy14217 139 CLSSRDTFIYAASAATSGLDTVMKILGDVVLRPKFSKEEINMARQTIQFELE-NYQMRPEQETLLMDMIHAAAYKDNTLG 217 (529)
Q Consensus 139 ~~t~~~~~~~~~~~~~~~l~~~l~ll~~~l~~p~f~~~~~~~~k~~~~~el~-~~~~~p~~~~~~~~~l~~~~~~~~~~~ 217 (529)
++|+.+.|.|.+++++++++.+|+++.+++.+|.|++++|+++|+.+.+|++ ...++| ...+.+.+.+.+|++||++
T Consensus 82 a~t~~d~t~y~~~~~~~~l~~~l~ll~d~~~~p~f~~~~~~~e~~~v~~e~~~~~~~~p--~~~~~~~~~~~~~~~~p~~ 159 (445)
T 3ami_A 82 AFTTRDYTAYYQQVPSSRLSDVMGLEADRMANLVVDDELFKKEIQVIAEERRWRTDDKP--RSKAYEALMAASYVAHPYR 159 (445)
T ss_dssp EEECSSCEEEEEEEEGGGHHHHHHHHHHHHHCBCCCHHHHHHHHHHHHHHHHHTGGGCH--HHHHHHHHHHHHCSSSGGG
T ss_pred cccCCCeEEEEEECCHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHhcccCCh--HHHHHHHHHHHhccCCCCC
Confidence 9999999999999999999999999999999999999999999999999998 566666 6788999999999999999
Q ss_pred CCCCCCchhcCCCCHHHHHHHHHhhcCCCCeEEEEec-CCHHHHHHHHHhhhccCCCccccccccccCCCCCCCCCCCcc
Q psy14217 218 LPKLCPPASIGVINNNTLFTYLKNYYTPTRMVVAGIG-VEHEALVEAANKYFVDKQPVWIQDKSLVLTDKPVIDTSSATY 296 (529)
Q Consensus 218 ~~~~g~~~~l~~i~~~~l~~f~~~~~~~~~~~l~ivG-~~~~~l~~~i~~~f~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 296 (529)
++.+|+.++|++++.++|++||++||+|+||+|+|+| +++++++++++++|+.+|+..... +... ..+..
T Consensus 160 ~~~~G~~e~l~~it~~~l~~f~~~~y~p~n~~l~vvGd~d~~~~~~~v~~~f~~~~~~~~~~--------~~~~-~~~~~ 230 (445)
T 3ami_A 160 VPVIGWMNDIQNMTAQDVRDWYKRWYGPNNATVVVVGDVEHEAVFRLAEQTYGKLARVEAPA--------RKQQ-GEPQQ 230 (445)
T ss_dssp SCTTCCHHHHHHCCHHHHHHHHHHHCSGGGEEEEEEESCCHHHHHHHHHHTGGGSCCCCCCC--------CCCC-CCCCC
T ss_pred CCCCCCHHHHhhCCHHHHHHHHHHhCCccceEEEEEcCCCHHHHHHHHHHHhcCCCCCCCCC--------CCCC-CCCCC
Confidence 9999999999999999999999999999999999999 999999999999999976431110 0000 11111
Q ss_pred cC-ceeEEecCCCCCCCCCCCCcceeEEEEeccCC---CC-CCCchHHHHHHHhhcCCCCCCCCCCCCCcccHHHHHHhh
Q psy14217 297 TG-GIVKEECNIPTFAGTSGLPELSHVVIGLEGVS---HQ-DPDFVPACVLNILMGGGGSFSAGGPGKGMYTRLYTNVLN 371 (529)
Q Consensus 297 ~~-~~~~~~~~~~~~~g~~~~~~~~~v~i~~~~~~---~~-~~~~~~~~vl~~lL~~~~~f~~~~~g~g~~srL~~~lR~ 371 (529)
.+ ....+..+. .++.+.++|+++. ++ +++.+++.+++.+|||+.+ |||+++||+
T Consensus 231 ~~~~~~~~~~~~----------~~~~v~l~~~~~~~~~~~~~~~~~~~~vl~~iLg~~~~-----------srL~~~lre 289 (445)
T 3ami_A 231 AGVRRVTVKAPA----------ELPYLALAWHVPAIVDLDKSRDAYALEILAAVLDGYDG-----------ARMTRQLVR 289 (445)
T ss_dssp CSCEEEEEEEEC----------SSCEEEEEEEECCCSSTTCCHHHHHHHHHHHHHHSSTT-----------CHHHHHTTT
T ss_pred CCceEEEEecCC----------CccEEEEEEEcCCcccccCChhHHHHHHHHHHHcCCcc-----------hHHHHHHhh
Confidence 22 223333222 4688999999988 77 7889999999999997533 999999999
Q ss_pred hcCceeEEEEeccc-cCC-cccEEEEEEeCCCC-HHHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHHHHHhcCChHHH
Q psy14217 372 RHHWMFSATAYNHA-YAD-TGLFCIHASAPPSN-VKNIVDVLVKELVTMAG-PIDADELSRAKKQLQSMLLMNLEARPAV 447 (529)
Q Consensus 372 ~~gl~Y~~~a~~~~-~~~-~g~f~i~~~~~p~~-~~~~~~~i~~~l~~l~~-~it~~el~~ak~~l~~~~~~~~~~~~~~ 447 (529)
+.|++|++++++.. ..+ .|.|.|++.+.|++ .+++++.+.++|+++++ +++++||+++|+.++.++....+++..+
T Consensus 290 ~~gl~y~v~~~~~~~~~~~~g~~~i~~~~~~~~~~~~~~~~i~~~l~~l~~~g~t~~el~~ak~~~~~~~~~~~~~~~~~ 369 (445)
T 3ami_A 290 GNKHAVSAGAGYDSLSRGQQGLFILEGVPSKGVTIAQLETDLRAQVRDIAAKGVTEAELSRVKSQMVAGKVYEQDSLMGQ 369 (445)
T ss_dssp TSCCEEEEEEECCCCCSSCCEEEEEEEEECTTCCHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHTTTSHHHH
T ss_pred cCCcEEEEEeeccccccCCCCeEEEEEEECCCCCHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHhhCHHHH
Confidence 99999999998874 456 89999999999984 99999999999999986 8999999999999999999999999999
Q ss_pred HHHHHHHHHhcCCCCChhHHHHHHccCCHHHHHHHHHHhccC-CCeEEEEcCCCCCCCHH
Q psy14217 448 FEDVGRQVLATGHRKRPSTYIESIENVTEDDIRRVASRLLTS-QPSVAARGELINFPSYE 506 (529)
Q Consensus 448 ~~~l~~~~l~~~~~~~~~~~~~~i~~vT~edv~~~a~~~l~~-~~~~~v~G~~~~ip~~~ 506 (529)
+..++...+.++..+..+++.+.|++||++||++++++++.+ +.+++++||.+..|...
T Consensus 370 ~~~l~~~~~~~~~~~~~~~~~~~i~~vt~~dv~~~a~~~l~~~~~~~~~~~p~~~~~~~~ 429 (445)
T 3ami_A 370 ATQIGGLEVLGLSWRDDDRFYQQLRSVTAAEVKAAAARLLTDDTLTVANLVPLPPDPKAQ 429 (445)
T ss_dssp HHHHHHHHTTTCCTTHHHHHHHHHHTCCHHHHHHHHHTTSCSTTEEEEEEEEECC-----
T ss_pred HHHHHHHHHcCCChHHHHHHHHHHHcCCHHHHHHHHHHHcCcCCeEEEEEccCccCcccc
Confidence 999988877665667788999999999999999999999987 57788899987776654
No 7
>1pp9_B Ubiquinol-cytochrome C reductase complex core Pro mitochondrial; cytochrome BC1, membrane protein, heme protein, rieske iron protein, cytochrome B, complex III; HET: BHG HEM HEC SMA UQ CDL PEE; 2.10A {Bos taurus} SCOP: d.185.1.1 d.185.1.1 PDB: 1bgy_B* 1be3_B* 1l0n_B* 1ntk_B* 1ntm_B* 1ntz_B* 1nu1_B* 1l0l_B* 1ppj_B* 1sqq_B* 1sqv_B* 1sqx_B* 2a06_B* 2fyu_B* 2ybb_B* 1sqb_B* 1sqp_B* 1qcr_B* 2bcc_B* 3bcc_B* ...
Probab=100.00 E-value=9.6e-56 Score=460.16 Aligned_cols=418 Identities=27% Similarity=0.462 Sum_probs=373.9
Q ss_pred CCCeEEEEcCCCCEEEEeecCCCeEEEEEEEccCCCCCCCCCCcHHHHHHHHhhcCCCCCCCHHHHHHHHHHhCCEeeEe
Q psy14217 61 DRNTQVTTLPNGLRVASENRFGSFCTIGVIIDSGSRYEQPYPSGVSHFLEKLAFNSTSEYVNKDAIAQSLEKIGGICDCL 140 (529)
Q Consensus 61 ~~~~~~~~L~NGl~v~~~~~~~~~~~i~l~~~~G~~~e~~~~~Gla~ll~~l~~~g~~~~~~~~~l~~~l~~~g~~~~~~ 140 (529)
.++++.++|+||++|++.+...+.+++.+++++|++.|+++..|++|+++||+|.|+.++ +..++.+.++.+|+.+|++
T Consensus 21 ~~~~~~~~L~nGl~v~~~~~~~~~~~~~~~~~~Gs~~e~~~~~g~a~lle~~~~~gt~~~-~~~~~~~~l~~~G~~~na~ 99 (439)
T 1pp9_B 21 PQDLEFTRLPNGLVIASLENYAPASRIGLFIKAGSRYENSNNLGTSHLLRLASSLTTKGA-SSFKITRGIEAVGGKLSVT 99 (439)
T ss_dssp CCCCEEEECTTSCEEEEECCCCSEEEEEEEESCSGGGCCTTSTTHHHHHHHTTTSCBSSS-CHHHHHHHHHHTTCEEEEE
T ss_pred CCCceEEECCCCcEEEEEeCCCceEEEEEEEeccccCCCCCcCcHHHHHHHhhcCCCCcC-CHHHHHHHHHHhCCeEEEE
Confidence 457799999999999987666699999999999999999999999999999999999997 6789999999999999999
Q ss_pred eccceEEEEEEecCCCHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHhhcCCchHHHHHHHHHHHcCCCCCCCCCC
Q psy14217 141 SSRDTFIYAASAATSGLDTVMKILGDVVLRPKFSKEEINMARQTIQFELENYQMRPEQETLLMDMIHAAAYKDNTLGLPK 220 (529)
Q Consensus 141 t~~~~~~~~~~~~~~~l~~~l~ll~~~l~~p~f~~~~~~~~k~~~~~el~~~~~~p~~~~~~~~~l~~~~~~~~~~~~~~ 220 (529)
++.+.+.|++++++++++.+|+++.+++.+|.|++++|+++|+.+.+|++...++| ...+.+.+...+|+ ||++++.
T Consensus 100 t~~~~t~~~~~~~~~~l~~~l~ll~~~~~~p~f~~~~~~~~k~~v~~e~~~~~~~p--~~~~~~~~~~~~~~-~~~~~~~ 176 (439)
T 1pp9_B 100 STRENMAYTVECLRDDVDILMEFLLNVTTAPEFRRWEVAALQPQLRIDKAVALQNP--QAHVIENLHAAAYR-NALANSL 176 (439)
T ss_dssp ECSSCEEEEEEEEGGGHHHHHHHHHHHHHCBCCCHHHHHHHHHHHHHHHHHHTTSH--HHHHHHHHHHHHBS-SGGGSCS
T ss_pred ecceEEEEEEEeehhhHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHcCH--HHHHHHHHHHHHhc-CCCCCCc
Confidence 99999999999999999999999999999999999999999999999999877766 67888999999999 9999999
Q ss_pred CCCchhcCCCCHHHHHHHHHhhcCCCCeEEEEecCCHHHHHHHHHhhhccCCCccccccccccCCCCCCCCCCCcccCce
Q psy14217 221 LCPPASIGVINNNTLFTYLKNYYTPTRMVVAGIGVEHEALVEAANKYFVDKQPVWIQDKSLVLTDKPVIDTSSATYTGGI 300 (529)
Q Consensus 221 ~g~~~~l~~i~~~~l~~f~~~~~~~~~~~l~ivG~~~~~l~~~i~~~f~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 300 (529)
+|+.++|++++.++|++||++||+|+||+++|+|-+++++.++++++|+ ++..... +. ....+.++.
T Consensus 177 ~g~~~~l~~it~~~l~~f~~~~y~~~~~~l~v~G~~~~~~~~~~~~~~~-~~~~~~~---------~~---~~~~~~~~~ 243 (439)
T 1pp9_B 177 YCPDYRIGKVTPVELHDYVQNHFTSARMALIGLGVSHPVLKQVAEQFLN-IRGGLGL---------SG---AKAKYHGGE 243 (439)
T ss_dssp SCCGGGTTTCCHHHHHHHHHHHCSGGGEEEEEESSCHHHHHHHHHHHCC-CCCCC-C---------CC---CCCCBCCEE
T ss_pred cCCHHHHhhcCHHHHHHHHHHhCCCCceEEEEeCCCHHHHHHHHHHHhC-CCCCCCC---------CC---CCCCCcCCe
Confidence 9999999999999999999999999999999999888999999999998 7643110 00 111223333
Q ss_pred eEEecCCCCCCCCCCCCcceeEEEEeccCCCCCCCchHHHHHHHhhcCCCCCCCCCCCCCcccHHHHHHhhhcCceeEEE
Q psy14217 301 VKEECNIPTFAGTSGLPELSHVVIGLEGVSHQDPDFVPACVLNILMGGGGSFSAGGPGKGMYTRLYTNVLNRHHWMFSAT 380 (529)
Q Consensus 301 ~~~~~~~~~~~g~~~~~~~~~v~i~~~~~~~~~~~~~~~~vl~~lL~~~~~f~~~~~g~g~~srL~~~lR~~~gl~Y~~~ 380 (529)
..+..+. +++++.++|+++++++++..++.|++.+|++++.|++|| ||.+|||++||++.|++|+++
T Consensus 244 ~~~~~~~----------~~~~v~~~~~~~~~~~~~~~~~~ll~~iLg~~~~~~~~~---g~~s~L~~~lRe~~gl~Y~~~ 310 (439)
T 1pp9_B 244 IREQNGD----------SLVHAALVAESAAIGSAEANAFSVLQHVLGAGPHVKRGS---NATSSLYQAVAKGVHQPFDVS 310 (439)
T ss_dssp EEEECCC----------SEEEEEEEEECCCTTSHHHHHHHHHHHHHCCSCSBTTCC---CTTCHHHHHHHHHCCSCEEEE
T ss_pred EEecCCc----------cceEEEEEecCCCCCchHHHHHHHHHHHhCCCcccCCCC---CccCHHHHHHHHhcCCceEEE
Confidence 3333332 568999999998888889999999999999988888776 899999999999999999999
Q ss_pred EeccccCCcccEEEEEEeCCCCHHHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHhcC
Q psy14217 381 AYNHAYADTGLFCIHASAPPSNVKNIVDVLVKELVTMAG-PIDADELSRAKKQLQSMLLMNLEARPAVFEDVGRQVLATG 459 (529)
Q Consensus 381 a~~~~~~~~g~f~i~~~~~p~~~~~~~~~i~~~l~~l~~-~it~~el~~ak~~l~~~~~~~~~~~~~~~~~l~~~~l~~~ 459 (529)
+++..+.+.|.|.+++.++|++++++++.+.++++++++ +++++||+++|+.++.++....+++..++..++...+..+
T Consensus 311 ~~~~~~~~~g~~~i~~~~~~~~~~~~~~~~~~~l~~l~~~~~t~~el~~ak~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 390 (439)
T 1pp9_B 311 AFNASYSDSGLFGFYTISQAASAGDVIKAAYNQVKTIAQGNLSNPDVQAAKNKLKAGYLMSVESSEGFLDEVGSQALAAG 390 (439)
T ss_dssp EEEEEETTEEEEEEEEEEEGGGHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHHTSSHHHHHHHHHHHHHHHS
T ss_pred EeeccccccceEEEEEEeCHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHhcC
Confidence 988777788999999999999999999999999999987 7999999999999999999999999999999988877667
Q ss_pred CCCChhHHHHHHccCCHHHHHHHHHHhccCCCeEEEEcCCCCCCCHHHH
Q psy14217 460 HRKRPSTYIESIENVTEDDIRRVASRLLTSQPSVAARGELINFPSYEDI 508 (529)
Q Consensus 460 ~~~~~~~~~~~i~~vT~edv~~~a~~~l~~~~~~~v~G~~~~ip~~~~~ 508 (529)
.....+++.+.|++||++||++++++++..+.+++++|+.+.+|.++++
T Consensus 391 ~~~~~~~~~~~i~~vt~~dv~~~a~~~~~~~~~~~v~g~~~~~~~~~~~ 439 (439)
T 1pp9_B 391 SYTPPSTVLQQIDAVADADVINAAKKFVSGRKSMAASGNLGHTPFIDEL 439 (439)
T ss_dssp SCCCHHHHHHHHHTCCHHHHHHHHHHHHHSCEEEEEEECGGGCCCGGGC
T ss_pred CCCCHHHHHHHHhcCCHHHHHHHHHHHhcCCceEEEECCcccCCccccC
Confidence 7777899999999999999999999999867889999999999988753
No 8
>3gwb_A Peptidase M16 inactive domain family protein; peptidase M16 family, PFL_5859, structural genomics, PSI-2, structure initiative; 1.90A {Pseudomonas fluorescens}
Probab=100.00 E-value=1.6e-54 Score=450.34 Aligned_cols=412 Identities=15% Similarity=0.201 Sum_probs=360.8
Q ss_pred CCCCeEEEEcCCCCEEEEeecC-CCeEEEEEEEccCCCCCCCCCCcHHHHHHHHhhcCCCCCCCHHHHHHHHHHhCCEee
Q psy14217 60 NDRNTQVTTLPNGLRVASENRF-GSFCTIGVIIDSGSRYEQPYPSGVSHFLEKLAFNSTSEYVNKDAIAQSLEKIGGICD 138 (529)
Q Consensus 60 ~~~~~~~~~L~NGl~v~~~~~~-~~~~~i~l~~~~G~~~e~~~~~Gla~ll~~l~~~g~~~~~~~~~l~~~l~~~g~~~~ 138 (529)
..++++.++|+||++|++.+.+ .+.+++.+++++|++.| ++..|++|+++||++.|+.++ +..++.+.++.+|+.+|
T Consensus 10 ~~~~~~~~~L~NGl~v~~~~~~~~~~~~~~~~~~~Gs~~e-~~~~g~a~lle~ll~~gt~~~-~~~~l~~~l~~~g~~~~ 87 (434)
T 3gwb_A 10 RNLNVQTWSTAEGAKVLFVEARELPMFDLRLIFAAGSSQD-GNAPGVALLTNAMLNEGVAGK-DVGAIAQGFEGLGADFG 87 (434)
T ss_dssp --CCCEEEECTTCCEEEEEECCSSSEEEEEEEESCSGGGC-TTSTTHHHHHHHHGGGEETTE-EHHHHHHHHHTTTCEEE
T ss_pred cCCCCEEEEcCCCeEEEEEECCCCCEEEEEEEEecccccC-CcchhHHHHHHHHHhcCcccC-CHHHHHHHHHHhCCEEE
Confidence 3567899999999999987665 49999999999999999 889999999999999999996 67899999999999999
Q ss_pred EeeccceEEEEEEecCCC--HHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHhhcCCchHHHHHHHHHHHcCCCCCC
Q psy14217 139 CLSSRDTFIYAASAATSG--LDTVMKILGDVVLRPKFSKEEINMARQTIQFELENYQMRPEQETLLMDMIHAAAYKDNTL 216 (529)
Q Consensus 139 ~~t~~~~~~~~~~~~~~~--l~~~l~ll~~~l~~p~f~~~~~~~~k~~~~~el~~~~~~p~~~~~~~~~l~~~~~~~~~~ 216 (529)
++++.+.+.|++++++++ ++.+|+++.+++.+|.|++++|+++|+.+..++++..++| ...+.+.+.+.+|+++|+
T Consensus 88 a~t~~~~~~~~~~~~~~~~~l~~~l~ll~~~~~~p~f~~~~~~~~~~~~~~e~~~~~~~p--~~~~~~~~~~~~~~~~~~ 165 (434)
T 3gwb_A 88 NGAYKDMAVASLRSLSAVDKREPALKLFAEVVGKPTFPADSLARIKNQMLAGFEYQKQNP--GKLASLELMKRLYGTHPY 165 (434)
T ss_dssp EEECSSCEEEEEEEECSHHHHHHHHHHHHHHHHSCCCCHHHHHHHHHHHHHHHHHHTTCH--HHHHHHHHHHHHHTTSTT
T ss_pred eeecCCeEEEEEEecCccccHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHhhcCH--HHHHHHHHHHHhcCCCCC
Confidence 999999999999999988 9999999999999999999999999999999999887766 689999999999999999
Q ss_pred CCCCCCCchhcCCCCHHHHHHHHHhhcCCCCeEEEEec-CCHHHHHHHHHhhhccCCCccccccccccCCCCCCCCCCCc
Q psy14217 217 GLPKLCPPASIGVINNNTLFTYLKNYYTPTRMVVAGIG-VEHEALVEAANKYFVDKQPVWIQDKSLVLTDKPVIDTSSAT 295 (529)
Q Consensus 217 ~~~~~g~~~~l~~i~~~~l~~f~~~~~~~~~~~l~ivG-~~~~~l~~~i~~~f~~l~~~~~~~~~~~~~~~~~~~~~~~~ 295 (529)
+++..|+.++|++++.++|++||+++|+|+||+++++| ++++++.++++++|+.+|...... .+. .+..
T Consensus 166 ~~~~~G~~~~l~~it~~~l~~f~~~~y~~~~~~l~v~G~~~~~~~~~~~~~~~~~l~~~~~~~-------~~~---~~~~ 235 (434)
T 3gwb_A 166 AHASDGDAKSIPPITLAQLKAFHAKAYAAGNVVIALVGDLSRSDAEAIAAQVSAALPKGPALA-------KIE---QPAE 235 (434)
T ss_dssp SSCTTCCTTTTTTCCHHHHHHHHHHHSCGGGEEEEEEESCCHHHHHHHHHHHHHHSCCCCCCC-------CCC---CCCC
T ss_pred CCCCCCCHHHHHhCCHHHHHHHHHHhcCcCCeEEEEEcCCCHHHHHHHHHHHHhcCCCCCCCC-------CCC---CCCC
Confidence 99999999999999999999999999999999999999 999999999999999976431110 011 1112
Q ss_pred ccCceeEEecCCCCCCCCCCCCcceeEEEEeccCCCCCCCchHHHHHHHhhcCCCCCCCCCCCCCcccHHHHHHhhhcCc
Q psy14217 296 YTGGIVKEECNIPTFAGTSGLPELSHVVIGLEGVSHQDPDFVPACVLNILMGGGGSFSAGGPGKGMYTRLYTNVLNRHHW 375 (529)
Q Consensus 296 ~~~~~~~~~~~~~~~~g~~~~~~~~~v~i~~~~~~~~~~~~~~~~vl~~lL~~~~~f~~~~~g~g~~srL~~~lR~~~gl 375 (529)
..++...+..+. .++.+.++|+++.+++++..++.|++.+||++ ||.+|||++||++.|+
T Consensus 236 ~~~~~~~~~~~~----------~~~~v~~~~~~~~~~~~d~~~l~vl~~iLg~~----------~~~s~L~~~lRe~~gl 295 (434)
T 3gwb_A 236 PKASIGHIEFPS----------SQTSLMLAQLGIDRDDPDYAAVSLGNQILGGG----------GFGTRLMSEVREKRGL 295 (434)
T ss_dssp CCCEEEEEECCS----------SEEEEEEEEECCBTTCTTHHHHHHHHHHHHSS----------SSCSHHHHHHTTTTCC
T ss_pred CCCceEEEeCCC----------CceeEEecCcCCCCCCcchHHHHHHHHHhCCC----------cccchhHHHHHhhcCC
Confidence 233343444332 56899999999888889999999999999964 3559999999999999
Q ss_pred eeEEEEeccccCCcccEEEEEEeCCCCHHHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHHHHHhcCChHHHHHHHHHH
Q psy14217 376 MFSATAYNHAYADTGLFCIHASAPPSNVKNIVDVLVKELVTMAG-PIDADELSRAKKQLQSMLLMNLEARPAVFEDVGRQ 454 (529)
Q Consensus 376 ~Y~~~a~~~~~~~~g~f~i~~~~~p~~~~~~~~~i~~~l~~l~~-~it~~el~~ak~~l~~~~~~~~~~~~~~~~~l~~~ 454 (529)
+|++++++..+.+.|.|.|+++++|++++++++.+.++++++++ +++++||+++|+.++.++....+++..++..++..
T Consensus 296 ~Y~v~~~~~~~~~~g~~~i~~~~~~~~~~~~~~~i~~~l~~l~~~~~~~~el~~ak~~~~~~~~~~~~~~~~~~~~~~~~ 375 (434)
T 3gwb_A 296 TYGVYSGFTPMQARGPFMINLQTRAEMSEGTLKLVQDVFAEYLKNGPTQKELDDAKRELAGSFPLSTASNADIVGQLGAM 375 (434)
T ss_dssp CSCEEEEECCBSSCCEEEEEEEEEGGGHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHC---CCCCHHHHHHHHHHH
T ss_pred cceeeeecccCCCceeEEEEEecchhhHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhhhhhhccCHHHHHHHHHHH
Confidence 99999999888889999999999999999999999999999986 89999999999999999999999999999999887
Q ss_pred HHhcCCCCChhHHHHHHccCCHHHHHHHHHHhccC-CCeEEEEcCCCCCCCH
Q psy14217 455 VLATGHRKRPSTYIESIENVTEDDIRRVASRLLTS-QPSVAARGELINFPSY 505 (529)
Q Consensus 455 ~l~~~~~~~~~~~~~~i~~vT~edv~~~a~~~l~~-~~~~~v~G~~~~ip~~ 505 (529)
...+...+..+++.+.|++||++||++++++++.+ +.+++++|+...-|-+
T Consensus 376 ~~~~~~~~~~~~~~~~i~~vt~~dv~~~a~~~l~~~~~~~~vvg~~~~~~~~ 427 (434)
T 3gwb_A 376 GFYNLPLSYLEDFMRQSQELTVEQVKAAMNKHLNVDKMVIVSAGPTVAQKPL 427 (434)
T ss_dssp HHTTCCTTHHHHHHHHHHHCCHHHHHHHHHHHCCGGGCEEEEEECCCCCCC-
T ss_pred HHcCCCccHHHHHHHHHHhCCHHHHHHHHHHhcChhhEEEEEEcCccccCcc
Confidence 66555556788999999999999999999999986 6889999997654433
No 9
>3cx5_A Cytochrome B-C1 complex subunit 1, mitochondrial; complex III, electron transfer complex, cytochrome BC1 complex, mitochondrialtransmembrane complex; HET: M3L SUC 6PH UMQ HEM SMA 8PE 9PE CN5 7PH CN3; 1.90A {Saccharomyces cerevisiae} SCOP: d.185.1.1 d.185.1.1 PDB: 1p84_A* 2ibz_A* 1kb9_A* 3cxh_A* 1ezv_A* 1kyo_A*
Probab=100.00 E-value=5.5e-54 Score=445.72 Aligned_cols=415 Identities=20% Similarity=0.316 Sum_probs=360.6
Q ss_pred EEEEcCCCCEEEEeecC-CCeEEEEEEEccCCCCCCCCCCcHHHHHHHHhhcCCCCCCCHHHHHHHHHHhCCEeeEeecc
Q psy14217 65 QVTTLPNGLRVASENRF-GSFCTIGVIIDSGSRYEQPYPSGVSHFLEKLAFNSTSEYVNKDAIAQSLEKIGGICDCLSSR 143 (529)
Q Consensus 65 ~~~~L~NGl~v~~~~~~-~~~~~i~l~~~~G~~~e~~~~~Gla~ll~~l~~~g~~~~~~~~~l~~~l~~~g~~~~~~t~~ 143 (529)
+.++|+||++|++.+.+ .+.+.+.+++++|+++|++++.|++|+++||++.|+.+ ..++..|+.+|++++.
T Consensus 2 ~~~~L~NGl~v~~~~~~~~~~~~~~l~~~~Gs~~e~~~~~g~ahlle~~l~~gt~~--------~~~~~~G~~~na~t~~ 73 (431)
T 3cx5_A 2 EVTQLSNGIVVATEHNPSAHTASVGVVFGSGAANENPYNNGVSNLWKNIFLSKENS--------AVAAKEGLALSSNISR 73 (431)
T ss_dssp CCEEEESSSEEEEEECTTCSSEEEEEEESCCGGGSCTTTTTHHHHHHHHHTSHHHH--------HHHHHTTCEEEEEECS
T ss_pred eEEECCCCCEEEEEECCCCCEEEEEEEEecCccCCCCCCcchHHHHHHHHhcCCCc--------ccHHHcCCeeeeeecC
Confidence 46799999999987664 58999999999999999999999999999999998643 2468899999999999
Q ss_pred ceEEEEEEecCCCHHHHHHHHHHhhcCCC---CCHHHHHHHHHHHHHHHHHhhcCC-chHHHHHHHHHHHcCCCCCCCCC
Q psy14217 144 DTFIYAASAATSGLDTVMKILGDVVLRPK---FSKEEINMARQTIQFELENYQMRP-EQETLLMDMIHAAAYKDNTLGLP 219 (529)
Q Consensus 144 ~~~~~~~~~~~~~l~~~l~ll~~~l~~p~---f~~~~~~~~k~~~~~el~~~~~~p-~~~~~~~~~l~~~~~~~~~~~~~ 219 (529)
+.+.|++++++++++.+|+++.+++.+|. |++++|+++|+.+.+|++...++| . ..+.+.+.+.+|++||++++
T Consensus 74 ~~t~~~~~~~~~~l~~~l~ll~~~~~~p~~~~f~~~~~~~ek~~v~~e~~~~~~~p~~--~~~~~~~~~~~~~~~~~~~~ 151 (431)
T 3cx5_A 74 DFQSYIVSSLPGSTDKSLDFLNQSFIQQKANLLSSSNFEATKKSVLKQVQDFEDNDHP--NRVLEHLHSTAFQNTPLSLP 151 (431)
T ss_dssp SCEEEEEEECSTTHHHHHHHHHHHHHTCSTTTTCHHHHHHHHHHHHHHHHHHHHHCHH--HHHHHHHHHHHTTTSGGGSC
T ss_pred CeEEEEEEechhhHHHHHHHHHHHHhCcccccCCHHHHHHHHHHHHHHHHhhhcCchh--HHHHHHHHHHhcCCCCCCCC
Confidence 99999999999999999999999999999 999999999999999999876665 4 57889999999999999999
Q ss_pred CCCCchhcCCCCHHHHHHHHHhhcCCCCeEEEEec-CCHHHHHHHHHhhhccCCCccccccccccCCCCCCCCCCCcccC
Q psy14217 220 KLCPPASIGVINNNTLFTYLKNYYTPTRMVVAGIG-VEHEALVEAANKYFVDKQPVWIQDKSLVLTDKPVIDTSSATYTG 298 (529)
Q Consensus 220 ~~g~~~~l~~i~~~~l~~f~~~~~~~~~~~l~ivG-~~~~~l~~~i~~~f~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 298 (529)
..|+.++|++++.++|++||+++|+|+||+++++| +++++++++++++|+.+|.... + +.. .++...+
T Consensus 152 ~~g~~~~l~~~t~~~l~~f~~~~y~~~~~~l~v~G~~~~~~~~~~~~~~~~~~~~~~~------~---~~~--~~~~~~~ 220 (431)
T 3cx5_A 152 TRGTLESLENLVVADLESFANNHFLNSNAVVVGTGNIKHEDLVNSIESKNLSLQTGTK------P---VLK--KKAAFLG 220 (431)
T ss_dssp TTCCHHHHHTCCHHHHHHHHHHHSCGGGEEEEEEESCCHHHHHHHHTTSCCCSSCSCC------C---CCC--CCCCCCC
T ss_pred CCCCHHHHhhCCHHHHHHHHHhcCCCCcEEEEEEcCCCHHHHHHHHHHHhCCCCCCCC------C---CCC--CCCcccC
Confidence 89999999999999999999999999999999999 9999999999998888653311 0 000 1112233
Q ss_pred ceeEEecCCCCCCCCCCCCcceeEEEEeccCCCCCCCchHHHHHHHhhcCCCCCCCCCCCCC-cccHHHHHHhhhcCcee
Q psy14217 299 GIVKEECNIPTFAGTSGLPELSHVVIGLEGVSHQDPDFVPACVLNILMGGGGSFSAGGPGKG-MYTRLYTNVLNRHHWMF 377 (529)
Q Consensus 299 ~~~~~~~~~~~~~g~~~~~~~~~v~i~~~~~~~~~~~~~~~~vl~~lL~~~~~f~~~~~g~g-~~srL~~~lR~~~gl~Y 377 (529)
....+... + .+++.+.++|+++++++++..++.+++.+|+++ +.||||+| +.+|||++||++ |++|
T Consensus 221 ~~~~~~~~-~--------~~~~~v~~~~~~~~~~~~~~~~~~vl~~iL~~~---~~~~~~~~~~~s~L~~~lRe~-gl~y 287 (431)
T 3cx5_A 221 SEVRLRDD-T--------LPKAWISLAVEGEPVNSPNYFVAKLAAQIFGSY---NAFEPASRLQGIKLLDNIQEY-QLCD 287 (431)
T ss_dssp EEEEEECT-T--------SSSEEEEEEEECCCTTCTTHHHHHHHHHHHCEE---ETTCTTGGGSSCTHHHHHHTT-TCCS
T ss_pred ceEEEcCC-C--------CCceEEEEEeecCCCCCccHHHHHHHHHHcCCC---ccCCCCccccccHHHHHHHhc-Ccee
Confidence 33333222 1 156899999999888889999999999999964 35777875 779999999975 9999
Q ss_pred EEEEeccccCCcccEEEEEEeCC-CCHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHH--hcCChHHHHHHHHHH
Q psy14217 378 SATAYNHAYADTGLFCIHASAPP-SNVKNIVDVLVKELVTMAGPIDADELSRAKKQLQSMLLM--NLEARPAVFEDVGRQ 454 (529)
Q Consensus 378 ~~~a~~~~~~~~g~f~i~~~~~p-~~~~~~~~~i~~~l~~l~~~it~~el~~ak~~l~~~~~~--~~~~~~~~~~~l~~~ 454 (529)
++++++..+.+.|.|.|++.++| ++++++++.+.+++++++++++++||+++|+.++.++.. ..+++..++..++..
T Consensus 288 ~v~~~~~~~~~~g~~~i~~~~~~~~~~~~~~~~~~~~l~~l~~~~t~~el~~ak~~~~~~~~~~~~~~~~~~~~~~~~~~ 367 (431)
T 3cx5_A 288 NFNHFSLSYKDSGLWGFSTATRNVTMIDDLIHFTLKQWNRLTISVTDTEVERAKSLLKLQLGQLYESGNPVNDANLLGAE 367 (431)
T ss_dssp EEEEEEEECSSCEEEEEEEEESCTTCHHHHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHSCSCHHHHHHHHHHH
T ss_pred eEeEeecccCCCceEEEEEeeCchhhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhhhccCCHHHHHHHHHHH
Confidence 99998887778899999999999 999999999999999986689999999999999999999 899999999998887
Q ss_pred HHhcCCCCChhHHHHHHccCCHHHHHHHHHHhccC-CCeEEEEcCCCCCCCHHHHHHHhh
Q psy14217 455 VLATGHRKRPSTYIESIENVTEDDIRRVASRLLTS-QPSVAARGELINFPSYEDIHSGIQ 513 (529)
Q Consensus 455 ~l~~~~~~~~~~~~~~i~~vT~edv~~~a~~~l~~-~~~~~v~G~~~~ip~~~~~~~~~~ 513 (529)
.+..+....++++.+.|++||++||++++++++.+ +.+++++|+.+.+|++++|.+.+.
T Consensus 368 ~~~~g~~~~~~~~~~~i~~vt~~dv~~~a~~~l~~~~~~~~v~g~~~~~~~~~~~~~~~~ 427 (431)
T 3cx5_A 368 VLIKGSKLSLGEAFKKIDAITVKDVKAWAGKRLWDQDIAIAGTGQIEGLLDYMRIRSDMS 427 (431)
T ss_dssp HHHHSSCCCHHHHHHHHHHCCHHHHHHHHHHHTTTCCCEEEEEESCTTSCCHHHHHHTTS
T ss_pred HHhcCCCCCHHHHHHHHhcCCHHHHHHHHHHHcccCCcEEEEEcchhcccCHHHHHhHHH
Confidence 65556565688999999999999999999999975 688999999999999999988654
No 10
>3amj_B Zinc peptidase inactive subunit; alpha/beta, zinc binding, hydrolase; 3.00A {Sphingomonas}
Probab=100.00 E-value=1.4e-53 Score=441.82 Aligned_cols=408 Identities=21% Similarity=0.273 Sum_probs=354.8
Q ss_pred CCeEEEEcCCCCEEEEeecC-CCeEEEEEEEccCCCCCCCCCCcHHHHHHHHhhcCCC----CCCCHHHHHHHHHHhCCE
Q psy14217 62 RNTQVTTLPNGLRVASENRF-GSFCTIGVIIDSGSRYEQPYPSGVSHFLEKLAFNSTS----EYVNKDAIAQSLEKIGGI 136 (529)
Q Consensus 62 ~~~~~~~L~NGl~v~~~~~~-~~~~~i~l~~~~G~~~e~~~~~Gla~ll~~l~~~g~~----~~~~~~~l~~~l~~~g~~ 136 (529)
++++.++|+||++|++.+.+ .+.+.+.+++++|++.|+++..|++|+++||+|.|+. ++ +..++.+.++.+|+.
T Consensus 2 ~~~~~~~L~NGl~v~~~~~~~~~~~~~~l~~~~Gs~~e~~~~~g~ahlle~~l~~Gt~~~~~~~-~~~~~~~~l~~~G~~ 80 (424)
T 3amj_B 2 IKIEHWTAPSGAQVYYVENRTLPMLDVQVDFDAGSAREPADQVGVASMTASLMDAGTGSGKSAL-DENAIADRLADIGAR 80 (424)
T ss_dssp CCCEEEECTTSCEEEEEECCSSSEEEEEEEESCSGGGSCTTSTTHHHHHHHTGGGEECSTTSCE-EHHHHHHHHHHTTCE
T ss_pred CccEEEECCCCcEEEEEECCCCCEEEEEEEEecCCccCCCccchHHHHHHHHHHhccCCCccCC-CHHHHHHHHHHhCCE
Confidence 35689999999999987664 5899999999999999999999999999999999999 87 667999999999999
Q ss_pred eeEeeccceEEEEEEecCCCH--HHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHhhcCCchHHHHHHHHHHHcCCCC
Q psy14217 137 CDCLSSRDTFIYAASAATSGL--DTVMKILGDVVLRPKFSKEEINMARQTIQFELENYQMRPEQETLLMDMIHAAAYKDN 214 (529)
Q Consensus 137 ~~~~t~~~~~~~~~~~~~~~l--~~~l~ll~~~l~~p~f~~~~~~~~k~~~~~el~~~~~~p~~~~~~~~~l~~~~~~~~ 214 (529)
++++++.+.+.|+++++++++ +.+|+++.+++.+|.|++++|+++|+.+.+|++...++| ...+.+.+.+.+|+++
T Consensus 81 ~~a~t~~~~t~~~~~~~~~~~~l~~~l~ll~~~~~~p~f~~~~~~~e~~~v~~e~~~~~~~p--~~~~~~~~~~~~~~~~ 158 (424)
T 3amj_B 81 LGGGAEADRASFSLRVLSSPAERNSALTILRDILAHPTFPAPVLERERARAIAGLREAQTQP--GSILGRRFTELAYGKH 158 (424)
T ss_dssp EEEEECSSCEEEEEEEESSHHHHHHHHHHHHHHHHCBCCCHHHHHHHHHHHHHHHHHHTTSH--HHHHHHHHHHHHHTTS
T ss_pred EEeecCCCeEEEEEEEeccccChhHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHhhcCH--HHHHHHHHHHhcCCCC
Confidence 999999999999999999998 999999999999999999999999999999999877766 6789999999999999
Q ss_pred CCCCCCCCCchhcCCCCHHHHHHHHHhhcCCCCeEEEEec-CCHHHHHHHHHhhhccCCCccccccccccCCCCCCCCCC
Q psy14217 215 TLGLPKLCPPASIGVINNNTLFTYLKNYYTPTRMVVAGIG-VEHEALVEAANKYFVDKQPVWIQDKSLVLTDKPVIDTSS 293 (529)
Q Consensus 215 ~~~~~~~g~~~~l~~i~~~~l~~f~~~~~~~~~~~l~ivG-~~~~~l~~~i~~~f~~l~~~~~~~~~~~~~~~~~~~~~~ 293 (529)
|++.+. +.++|++++.++|++||++||+|+||+++|+| ++++++.++++++|+.+|...... + .. .+
T Consensus 159 p~~~~~--~~~~l~~it~~~l~~f~~~~y~~~~~~l~v~Gd~~~~~~~~~~~~~f~~~~~~~~~~--------~-~~-~~ 226 (424)
T 3amj_B 159 PYGHVS--SVATLQKISRDQLVSFHRTHYVARTAVVTLVGDITRAEAETIAQQLTADLPAGATLP--------P-LP-DP 226 (424)
T ss_dssp GGGCCC--CHHHHHHCCHHHHHHHHHHHSCTTSCEEEEEESCCHHHHHHHHHHTTTTSCCCCCCC--------C-CC-CC
T ss_pred CCCCCC--CHHHHHhCCHHHHHHHHHHhcCCCceEEEEEeCCCHHHHHHHHHHHHhcCCCCCCCC--------C-CC-CC
Confidence 999876 79999999999999999999999999999999 999999999999999976431110 0 00 01
Q ss_pred CcccCceeEEecCCCCCCCCCCCCcceeEEEEeccCCCCCCCchHHHHHHHhhcCCCCCCCCCCCCCcccHHHHHHhhhc
Q psy14217 294 ATYTGGIVKEECNIPTFAGTSGLPELSHVVIGLEGVSHQDPDFVPACVLNILMGGGGSFSAGGPGKGMYTRLYTNVLNRH 373 (529)
Q Consensus 294 ~~~~~~~~~~~~~~~~~~g~~~~~~~~~v~i~~~~~~~~~~~~~~~~vl~~lL~~~~~f~~~~~g~g~~srL~~~lR~~~ 373 (529)
....+..+.+..+. .++.+.++|+++.+++++..++.+++.+||++ |+.+|||++||++.
T Consensus 227 ~~~~~~~~~~~~~~----------~~~~v~~~~~~~~~~~~~~~~~~vl~~iLg~~----------~~~srL~~~lR~~~ 286 (424)
T 3amj_B 227 AMPRATVERIANPA----------TQAHIAIGMPTLKRGDPDFFPLVVGNYALGGG----------GFESRLMKEIRDKR 286 (424)
T ss_dssp CCCCCEEEEEECSS----------SEEEEEEEEEEEBTTCTTHHHHHHHHHHHTTS----------GGGSHHHHHHTTTT
T ss_pred CCCCCceEEeeCCC----------CccEEEeeccCCCCCCcchHHHHHHHHHhCCC----------CccchhHHHHHHhC
Confidence 11123333333332 57899999998888889999999999999964 25599999999999
Q ss_pred CceeEEEEeccccCCcccEEEEEEeCCCCHHHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHHHHHhcCChHHHHHHHH
Q psy14217 374 HWMFSATAYNHAYADTGLFCIHASAPPSNVKNIVDVLVKELVTMAG-PIDADELSRAKKQLQSMLLMNLEARPAVFEDVG 452 (529)
Q Consensus 374 gl~Y~~~a~~~~~~~~g~f~i~~~~~p~~~~~~~~~i~~~l~~l~~-~it~~el~~ak~~l~~~~~~~~~~~~~~~~~l~ 452 (529)
|++|++++++..+.+.|.|.|+++++|++++++++.+.++++++++ +++++||+++|+.++.++....+++..++..++
T Consensus 287 gl~y~v~~~~~~~~~~g~~~i~~~~~~~~~~~~~~~i~~~l~~l~~~~~t~~el~~ak~~~~~~~~~~~~~~~~~~~~~~ 366 (424)
T 3amj_B 287 GLSYGAYSYFSPQKSMGLFQIGFETRAEKADEAVQVANDTLDAFLREGPTDAELQAAKDNLINGFALRLDSNAKILGQVA 366 (424)
T ss_dssp CCEEEEEEEECCBSSCEEEEEEEEEESTTHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHTSGGGGSSHHHHHHHHH
T ss_pred CeEEEeeeeeccCCCceeEEEEEEeCcccHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhhhhHhcCCHHHHHHHHH
Confidence 9999999998888888999999999999999999999999999986 899999999999999999999999999999888
Q ss_pred HHHHhcCCCCChhHHHHHHccCCHHHHHHHHHHhccC-CCeEEEEcCCCCCCC
Q psy14217 453 RQVLATGHRKRPSTYIESIENVTEDDIRRVASRLLTS-QPSVAARGELINFPS 504 (529)
Q Consensus 453 ~~~l~~~~~~~~~~~~~~i~~vT~edv~~~a~~~l~~-~~~~~v~G~~~~ip~ 504 (529)
...+.+...+..+++.+.|++||++||++++++++.+ +.+++++|+...+.+
T Consensus 367 ~~~~~~~~~~~~~~~~~~i~~vt~~dv~~~a~~~l~~~~~~~~~~~~~~~~~~ 419 (424)
T 3amj_B 367 VIGYYGLPLDYLDHYTERVQAVTVEQVREAFARHVKRENLITVVVGGKASLEH 419 (424)
T ss_dssp HHHHTTCCTTTTTSHHHHHHTCCHHHHHHHHHHHCCGGGCEEEEEECC-----
T ss_pred HHHHcCCChhHHHHHHHHHHcCCHHHHHHHHHHhcCccceEEEEECChhhhhh
Confidence 7665444456678899999999999999999999986 788999999765543
No 11
>3d3y_A Uncharacterized protein; APC29635, conserved protein, enterococcus faecalis V583, STR genomics, PSI-2, protein structure initiative; 1.95A {Enterococcus faecalis}
Probab=100.00 E-value=1.8e-49 Score=410.93 Aligned_cols=395 Identities=17% Similarity=0.192 Sum_probs=339.8
Q ss_pred EEcCCCCEEEEeecC-CCeEEEEEEEccCCCCCCCCCCcHHHHHHHHhhcCCCCCCCHHHHHHHHHHh-CCEeeEeeccc
Q psy14217 67 TTLPNGLRVASENRF-GSFCTIGVIIDSGSRYEQPYPSGVSHFLEKLAFNSTSEYVNKDAIAQSLEKI-GGICDCLSSRD 144 (529)
Q Consensus 67 ~~L~NGl~v~~~~~~-~~~~~i~l~~~~G~~~e~~~~~Gla~ll~~l~~~g~~~~~~~~~l~~~l~~~-g~~~~~~t~~~ 144 (529)
++|+||++|++.+.+ .+.+.+.+++++|+..|+ .|++|+++||++.|+.++++..++.+.++.+ |+.+|++++.+
T Consensus 6 ~~L~nG~~v~~~~~~~~~~~~~~~~~~~g~~~e~---~g~a~ll~~~l~~gt~~~~~~~~~~~~l~~~~G~~~~a~t~~~ 82 (425)
T 3d3y_A 6 VQLVKGVNLHVIPTEKYKTVRLLVRFNTRLNHET---ITKRTLLSSLMETNSLNYPNQVKLSERLAELYGASFGIGVSKK 82 (425)
T ss_dssp EEEETTEEEEEEECSSCSEEEEEEEEEEECCTTT---HHHHHHHHHHHHHCCSSSCSHHHHHHHHHHTTSCEEEEEEEEE
T ss_pred eeccCCcEEEEEecCccceEEEEEEEeCCCCccc---hhHHHHHHHHHHhhhhcCCCHHHHHHHHHHHhCceEeeeeeec
Confidence 899999999987764 599999999999998654 6999999999999999988888999999998 99999999988
Q ss_pred e----EEEEEEecCC-------CHHHHHHHHHHhhcCCC-----CCHHHHHHHHHHHHHHHHHhhcCCchHHHHHHHHHH
Q psy14217 145 T----FIYAASAATS-------GLDTVMKILGDVVLRPK-----FSKEEINMARQTIQFELENYQMRPEQETLLMDMIHA 208 (529)
Q Consensus 145 ~----~~~~~~~~~~-------~l~~~l~ll~~~l~~p~-----f~~~~~~~~k~~~~~el~~~~~~p~~~~~~~~~l~~ 208 (529)
. +.|+++++++ +++.+|+++.+++.+|. |++++|+++|+.+.++++...++| ...+.+.+.+
T Consensus 83 ~t~~~~~~~~~~~~~~~~~~~~~l~~~l~ll~~~l~~p~~~~~~f~~~~~~~~k~~v~~e~~~~~~~p--~~~~~~~~~~ 160 (425)
T 3d3y_A 83 GNQHWFNISMNIVNDHYLQDSQVLAEAVDFLKEIIFAPNIQAGQFEAETFQREKENLKAYLESIVEDK--QTYASLALQS 160 (425)
T ss_dssp TTEEEEEEEEEEECGGGCSSCCHHHHHHHHHHHHHHSCSEETTEECHHHHHHHHHHHHHHHHHHHHSH--HHHHHHHHHH
T ss_pred CceEEEEEEEEecChhhccchhHHHHHHHHHHHHHhCcccccCCCCHHHHHHHHHHHHHHHHHHhhCH--HHHHHHHHHH
Confidence 8 5899999886 69999999999999999 999999999999999999877776 6788999999
Q ss_pred HcC-CCCCCCCCCCCCchhcCCCCHHHHHHHHHhhcCCCCeEEEEec-CCHHHHHHHHHhhhccCCCccccccccccCCC
Q psy14217 209 AAY-KDNTLGLPKLCPPASIGVINNNTLFTYLKNYYTPTRMVVAGIG-VEHEALVEAANKYFVDKQPVWIQDKSLVLTDK 286 (529)
Q Consensus 209 ~~~-~~~~~~~~~~g~~~~l~~i~~~~l~~f~~~~~~~~~~~l~ivG-~~~~~l~~~i~~~f~~l~~~~~~~~~~~~~~~ 286 (529)
.+| ++||++++..|+.++|++++.++|++||+++|.|+||+++|+| ++++++.+++ ++|+ +|....... .
T Consensus 161 ~~~~~~~~~~~~~~g~~~~l~~~t~~~l~~f~~~~y~~~~~~l~v~G~~~~~~~~~~~-~~~~-~~~~~~~~~------~ 232 (425)
T 3d3y_A 161 VYFNQSEDQKIPSFGTVAALAEETAASLAAYYQKMLAEDQVDIFVLGDVNEAELVPLF-KQLP-FTPREEGKA------A 232 (425)
T ss_dssp HHTTTCTTTTSCTTCCHHHHHHCCHHHHHHHHHHHHHHSEEEEEEEESCCHHHHHHHH-HTSC-CCCCCCCCC------C
T ss_pred HhccCCCCccCCCCCCHHHHHhCCHHHHHHHHHHHHhcCCeEEEEECCCCHHHHHHHH-HhCC-CCccccccc------c
Confidence 999 8899999989999999999999999999999999999999999 9999999999 9999 875321100 0
Q ss_pred CCCCCCCCcccCc-eeEEecCCCCCCCCCCCCcceeEEEEeccC-CCCCCCchHHHHHHHhhcCCCCCCCCCCCCCcccH
Q psy14217 287 PVIDTSSATYTGG-IVKEECNIPTFAGTSGLPELSHVVIGLEGV-SHQDPDFVPACVLNILMGGGGSFSAGGPGKGMYTR 364 (529)
Q Consensus 287 ~~~~~~~~~~~~~-~~~~~~~~~~~~g~~~~~~~~~v~i~~~~~-~~~~~~~~~~~vl~~lL~~~~~f~~~~~g~g~~sr 364 (529)
... ..+..... ......+. +++.+.++|+.+ .+++++..++.|++.+|||+. .+|
T Consensus 233 ~~~--~~~~~~~~~~~~~~~~~----------~~~~v~~~~~~~~~~~~~~~~~~~vl~~iLg~~~-----------~s~ 289 (425)
T 3d3y_A 233 IFY--NQPIRNVIEERTEREVL----------AQSKLNLAYNTDIYYGDSYYFALQVFNGIFGGFP-----------HSK 289 (425)
T ss_dssp SCC--CCCCCSSCEEEEEEEEC----------SSEEEEEEEECCCCTTSTTHHHHHHHHHHHTTST-----------TSH
T ss_pred ccc--cccCCCcceeEEecCCc----------cccEEEEEeecCCCCCCchHHHHHHHHHHhCCCh-----------hhH
Confidence 000 01111111 12222222 578999999985 688899999999999999753 399
Q ss_pred HHHHHhhhcCceeEEEEeccccCCcccEEEEEEeCCCCHHHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHHHHHhcCC
Q psy14217 365 LYTNVLNRHHWMFSATAYNHAYADTGLFCIHASAPPSNVKNIVDVLVKELVTMAG-PIDADELSRAKKQLQSMLLMNLEA 443 (529)
Q Consensus 365 L~~~lR~~~gl~Y~~~a~~~~~~~~g~f~i~~~~~p~~~~~~~~~i~~~l~~l~~-~it~~el~~ak~~l~~~~~~~~~~ 443 (529)
||++||+++|++|++++++.. ..|.|.|++.++|++++++++.+.++++++++ +++++||+++|+.++.++....++
T Consensus 290 L~~~lRe~~glaY~v~~~~~~--~~g~~~i~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~el~~ak~~~~~~~~~~~~~ 367 (425)
T 3d3y_A 290 LFMNVREKEHLAYYASSSIDT--FRGFMTVQTGIDGKNRNQVLRLISTELENIRLGKIRELEIEQTKAMLKNQYILALDN 367 (425)
T ss_dssp HHHHTTTTSCCCSEEEEEEET--TTTEEEEEEEECGGGHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHHTSC
T ss_pred HHHHHHHhcCeEEEEeccccc--cCceEEEEEecCHhhHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhHHhcccC
Confidence 999999999999999988764 37899999999999999999999999999987 799999999999999999999999
Q ss_pred hHHHHHHHHHHHHhcCCCCChhHHHHHHccCCHHHHHHHHHHhccCCCeEEEEcCCC
Q psy14217 444 RPAVFEDVGRQVLATGHRKRPSTYIESIENVTEDDIRRVASRLLTSQPSVAARGELI 500 (529)
Q Consensus 444 ~~~~~~~l~~~~l~~~~~~~~~~~~~~i~~vT~edv~~~a~~~l~~~~~~~v~G~~~ 500 (529)
+..++..++...+..+.....+++.+.|++||++||++++++++. +..++++|+.+
T Consensus 368 ~~~~~~~~~~~~~~~g~~~~~~~~~~~i~~vt~edv~~~a~~~~~-~~~~~v~g~~~ 423 (425)
T 3d3y_A 368 AGAWLEKEYLNELMPQTMLTAEEWIARINAVTIPEIQEVAKRLEL-QAIFFLEGETE 423 (425)
T ss_dssp HHHHHHHHHHHHHSTTSCCCHHHHHHHHHHCCHHHHHHHHHHCEE-EEEEEEEEECC
T ss_pred HHHHHHHHHHHHhhcCCCCCHHHHHHHHHhCCHHHHHHHHHhccC-ceEEEEeCCCC
Confidence 999999988887653555568999999999999999999999864 46678887654
No 12
>3go9_A Insulinase family protease; IDP00573, structural genomics, for structural genomics of infectious diseases, csgid, HYDR; HET: MSE; 1.62A {Yersinia pestis}
Probab=100.00 E-value=1.3e-49 Score=418.85 Aligned_cols=410 Identities=13% Similarity=0.123 Sum_probs=329.1
Q ss_pred CCCeEEEEcCCCCEEEEeec---CCCeEEEEEEEccCCCCCCCCCCcHHHHHHHHhhcCCCCCCCHHHHHHHHH----Hh
Q psy14217 61 DRNTQVTTLPNGLRVASENR---FGSFCTIGVIIDSGSRYEQPYPSGVSHFLEKLAFNSTSEYVNKDAIAQSLE----KI 133 (529)
Q Consensus 61 ~~~~~~~~L~NGl~v~~~~~---~~~~~~i~l~~~~G~~~e~~~~~Gla~ll~~l~~~g~~~~~~~~~l~~~l~----~~ 133 (529)
++.++.++|+||++|++.++ ..+.+++.+++++|+++|++++.|++||++||+|+||.++ +..++.+.++ ..
T Consensus 23 dp~~~~~~L~NGl~v~~~~~~~~~~~~v~~~l~~~~Gs~~e~~~~~Glahllehmlf~GT~~~-~~~~~~~~~~~~~~~~ 101 (492)
T 3go9_A 23 DPAWQQGKLDNGFSWQLLATPQRPSDRIELRLIVNTGSLSENTQEVGFAHLLPRLALMSSASF-TPAQLQSLWQQGIDNE 101 (492)
T ss_dssp CTTEEEEECTTSCEEEEEECTTSTTSCEEEEEEESCCGGGCCGGGTTHHHHHHHHHHHCCTTC-CHHHHHHHHHTCSCSS
T ss_pred CCCeEEEECCCCCEEEEEECCCCCCCeEEEEEEEecccCCCCCCCcCHHHHHHHHHhcCCCCC-CHHHHHHHHHHHHHhc
Confidence 45689999999999997543 2478999999999999999999999999999999999997 4568887665 46
Q ss_pred CCEeeEeeccceEEEEEEecC---CCHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHhhcCCchHHHHHHHHHHHc
Q psy14217 134 GGICDCLSSRDTFIYAASAAT---SGLDTVMKILGDVVLRPKFSKEEINMARQTIQFELENYQMRPEQETLLMDMIHAAA 210 (529)
Q Consensus 134 g~~~~~~t~~~~~~~~~~~~~---~~l~~~l~ll~~~l~~p~f~~~~~~~~k~~~~~el~~~~~~p~~~~~~~~~l~~~~ 210 (529)
|+.+|++|+.+.|.|++++++ ++++.+|+++.+++.+|.|++++|+++|..+..+++...++|. ...+ ...+
T Consensus 102 G~~~na~t~~d~t~y~~~~~~~~~~~l~~~l~ll~d~~~~p~f~~~~~~~er~~~~~~~~~~~~~~~--~~~~---~~~~ 176 (492)
T 3go9_A 102 RPLPPAITSYDFTLYSLSLPNNRPDLLKDALAWLSDTAGNLAVSEQTVNAALNTATDPIATFPQNIQ--EPWW---RYRL 176 (492)
T ss_dssp SCCCSEEECSSCEEEEEEECTTCHHHHHHHHHHHHHHHHCCCCSHHHHHHHHTCSSCCEEESSSCTT--CHHH---HHHT
T ss_pred CCCcceEeCCCeEEEEEECCCCcHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHhcccchh--hHHH---HHHh
Confidence 899999999999999999998 5799999999999999999999999999977766666555553 2222 2446
Q ss_pred CCCCCCCCCCCCCchhcCCCCHHHHHHHHHhhcCCCCeEEEEec-CCHHHHHHHHHhhhccCCCccccccccccCCCCCC
Q psy14217 211 YKDNTLGLPKLCPPASIGVINNNTLFTYLKNYYTPTRMVVAGIG-VEHEALVEAANKYFVDKQPVWIQDKSLVLTDKPVI 289 (529)
Q Consensus 211 ~~~~~~~~~~~g~~~~l~~i~~~~l~~f~~~~~~~~~~~l~ivG-~~~~~l~~~i~~~f~~l~~~~~~~~~~~~~~~~~~ 289 (529)
++.++++++.. .++|++++.++|++||++||+|+||+|+|+| ++++++.++++++|+.+|+..... ...
T Consensus 177 ~~~~~~~~~~~--~~~i~~it~~dL~~fy~~~Y~p~n~~l~vvGdvd~~~~~~~i~~~f~~~~~~~~~~--------~~~ 246 (492)
T 3go9_A 177 KGSSLIGHDPG--QPVTQPVDVEKLKQFYQQWYTPDAMTLYVVGNVDSRSIAAQISKAFSELKGKRTAP--------AAV 246 (492)
T ss_dssp TTSTTTTCCTT--CCCCSSCCHHHHHHHHHHHCCGGGEEEEEEESCCHHHHHHHHHHHHTTCCCCCSSC--------CCC
T ss_pred ccCCcccCCCc--hhhhhcCCHHHHHHHHHHhcCcCceEEEEEcCCCHHHHHHHHHHHhhcCCCCCCCC--------CCC
Confidence 66667776654 3679999999999999999999999999999 999999999999999966431110 011
Q ss_pred CCCCCcccCceeEEecCCCCCCCCCCCCcceeEEEEeccCCCCCCCchHH------HHHHHhhcCCCCCCCCCCCCCccc
Q psy14217 290 DTSSATYTGGIVKEECNIPTFAGTSGLPELSHVVIGLEGVSHQDPDFVPA------CVLNILMGGGGSFSAGGPGKGMYT 363 (529)
Q Consensus 290 ~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~v~i~~~~~~~~~~~~~~~------~vl~~lL~~~~~f~~~~~g~g~~s 363 (529)
....+...+....+..+. .++++.++|+++...++|..++ .+++.+|+ +
T Consensus 247 ~~~~~~~~~~~~~~~~~~----------~q~~v~l~~~~~~~~~~d~~~l~~~~~~~v~~~iLg---------------~ 301 (492)
T 3go9_A 247 ATLAPLPPEPVSLMNEQA----------AQDTLSLMWDTPWHPIQDSMALSRYWRSDLAREALF---------------W 301 (492)
T ss_dssp CCCCCCCSSCEEEEESSC----------SSEEEEEEEEEECCCCCSHHHHHHHHHHHHHHHHHH---------------H
T ss_pred CCCCCCCCCceEEEcCCC----------CCcEEEEEecCCCCCcccHHHHHHHHHHHHHHHHHH---------------H
Confidence 101111122233333332 5789999999988877776665 79999999 7
Q ss_pred HHHHHHhh--hcCceeEEEEeccccCCcccEEEEEEeCCCCHHHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHHHHHh
Q psy14217 364 RLYTNVLN--RHHWMFSATAYNHAYADTGLFCIHASAPPSNVKNIVDVLVKELVTMAG-PIDADELSRAKKQLQSMLLMN 440 (529)
Q Consensus 364 rL~~~lR~--~~gl~Y~~~a~~~~~~~~g~f~i~~~~~p~~~~~~~~~i~~~l~~l~~-~it~~el~~ak~~l~~~~~~~ 440 (529)
+|+.+||+ +.|++|++++++...++.+.|.+ ++.+++.+++++.+.++++++++ |+|++||+++|+.+++++...
T Consensus 302 ~L~~~lre~~~~gl~y~~~s~~~~~~~~~~~~i--~~~~~~~~~a~~~i~~el~~l~~~g~te~EL~~aK~~~~~~l~~~ 379 (492)
T 3go9_A 302 HIKQVLEKNNQKNLKLGFDCRVQYQRAQCAIHL--NTPVENLTANMTFVARELAALRANGLSQAEFDALMTQKNDQLSKL 379 (492)
T ss_dssp HHHHHHHHSCCTTCEEEEEEEEETTEEEEEEEE--EECGGGHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHTH
T ss_pred HHHHHHHHhhccccccccCchhhhhhcceEEEE--EcCcccHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHH
Confidence 99999999 89999999998876655555544 55789999999999999999986 899999999999999998776
Q ss_pred cC-----ChHHHHHHHHHHHHhcCCCCChhHH----HHHHccCCHHHHHHHHHHhccCCCeEEEEcCCCCCC-CHHHHHH
Q psy14217 441 LE-----ARPAVFEDVGRQVLATGHRKRPSTY----IESIENVTEDDIRRVASRLLTSQPSVAARGELINFP-SYEDIHS 510 (529)
Q Consensus 441 ~~-----~~~~~~~~l~~~~l~~~~~~~~~~~----~~~i~~vT~edv~~~a~~~l~~~~~~~v~G~~~~ip-~~~~~~~ 510 (529)
.+ +...+++.+++.+........++++ .+.|++||++||++++++++.++..++++|+...+. ..+.+.+
T Consensus 380 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~i~~vT~edV~~~a~~~l~~~~~~vvvg~~~~~e~~~~~l~~ 459 (492)
T 3go9_A 380 FATYARTDTDILMSQRLRSQQSGVVDIAPEQYQKLRQAFLSGLTLAELNRELKQQLSQDTTLVLMQPKGEPEVNVKALQE 459 (492)
T ss_dssp HHHHHTCCHHHHHHHHHHHHHHTCCCBCHHHHHHHHHHHHHHCCHHHHHHHHHHHHTSCCEEEEEEETTSCCCCHHHHHH
T ss_pred HHHHHhcchHHHHHHHHHHHhcCCCcCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhCCCCeEEEEcCCCCCCccHHHHHH
Confidence 54 4566777777776655545556553 366999999999999999999888999999887776 4666766
Q ss_pred Hhh
Q psy14217 511 GIQ 513 (529)
Q Consensus 511 ~~~ 513 (529)
.+.
T Consensus 460 ~~~ 462 (492)
T 3go9_A 460 IYN 462 (492)
T ss_dssp HHH
T ss_pred HHH
Confidence 655
No 13
>1q2l_A Protease III; hydrolase; 2.20A {Escherichia coli str} SCOP: d.185.1.1 d.185.1.1 d.185.1.1 d.185.1.1
Probab=100.00 E-value=8.6e-50 Score=453.49 Aligned_cols=412 Identities=12% Similarity=0.114 Sum_probs=344.3
Q ss_pred CCCCCeEEEEcCCCCEEEEeec-CCCeEEEEEEEccCCCCCCCCCCcHHHHHHHHhhcCCCCCCCHHHHHHHHHHhCCEe
Q psy14217 59 DNDRNTQVTTLPNGLRVASENR-FGSFCTIGVIIDSGSRYEQPYPSGVSHFLEKLAFNSTSEYVNKDAIAQSLEKIGGIC 137 (529)
Q Consensus 59 ~~~~~~~~~~L~NGl~v~~~~~-~~~~~~i~l~~~~G~~~e~~~~~Gla~ll~~l~~~g~~~~~~~~~l~~~l~~~g~~~ 137 (529)
.+...++.++|+||++|++.+. ..+.+.+.+++++|+++|+.+..|+||++|||+|+||.+|+...++.++++.+|+.+
T Consensus 16 ~d~~~~~~~~L~NGl~v~~~~~~~~~~~~~~l~v~~Gs~~e~~~~~GlAH~lEHmlf~Gt~~~p~~~~~~~~l~~~Gg~~ 95 (939)
T 1q2l_A 16 KDNRQYQAIRLDNGMVVLLVSDPQAVKSLSALVVPVGSLEDPEAYQGLAHYLEHMSLMGSKKYPQADSLAEYLKMHGGSH 95 (939)
T ss_dssp TCCCEEEEEEETTSCEEEEEECTTCSSEEEEEEESCCGGGCCGGGTTHHHHHHHHTTSCBSSSCSTTHHHHHHHTTTCEE
T ss_pred CCCcceEEEEecCCCEEEEEECCCCCceEEEEEeCccCCCCCCCCCchHHHHHHHHccCCCCCCCcchHHHHHHHcCCcc
Confidence 4566789999999999998655 468899999999999999999999999999999999999987779999999999999
Q ss_pred eEeeccceEEEEEEecCCCHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHhhcCCchHHHHHHHHHHHcCCCCCCC
Q psy14217 138 DCLSSRDTFIYAASAATSGLDTVMKILGDVVLRPKFSKEEINMARQTIQFELENYQMRPEQETLLMDMIHAAAYKDNTLG 217 (529)
Q Consensus 138 ~~~t~~~~~~~~~~~~~~~l~~~l~ll~~~l~~p~f~~~~~~~~k~~~~~el~~~~~~p~~~~~~~~~l~~~~~~~~~~~ 217 (529)
|++|+.++|+|.+++++++++.+|+++++++.+|.|++++++++|..+.+|++...++| ..++.+.+...+|++||++
T Consensus 96 NA~T~~d~T~y~~~~~~~~l~~~L~~l~d~~~~p~f~~~~~~~Er~~v~~E~~~~~~~~--~~~~~~~~~~~~~~~~p~~ 173 (939)
T 1q2l_A 96 NASTAPYRTAFYLEVENDALPGAVDRLADAIAEPLLDKKYAERERNAVNAELTMARTRD--GMRMAQVSAETINPAHPGS 173 (939)
T ss_dssp EEEECSSCEEEEEEECGGGHHHHHHHHHHHHHCBCCCSTTHHHHHHHHHHHHHHHTTSH--HHHHHHHHHHSSCTTSGGG
T ss_pred eEEECCCcEEEEEEeCHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHhccCCH--HHHHHHHHHHhcCCCCCCc
Confidence 99999999999999999999999999999999999999999999999999999887765 5788999999999999999
Q ss_pred CCCCCCchhcCC----CCHHHHHHHHHhhcCCCCeEEEEec-CCHHHHHHHHHhhhccCCCccccccccccCCCCCCCCC
Q psy14217 218 LPKLCPPASIGV----INNNTLFTYLKNYYTPTRMVVAGIG-VEHEALVEAANKYFVDKQPVWIQDKSLVLTDKPVIDTS 292 (529)
Q Consensus 218 ~~~~g~~~~l~~----i~~~~l~~f~~~~~~~~~~~l~ivG-~~~~~l~~~i~~~f~~l~~~~~~~~~~~~~~~~~~~~~ 292 (529)
++.+|+.++|++ ++.++|++||++||+|+||+|+|+| ++++++.++++++|+.+|+.....+ ....+..
T Consensus 174 ~~~~G~~~~l~~~~~~~~~~~l~~f~~~~Y~p~n~~l~v~G~~~~~~l~~~v~~~f~~~~~~~~~~~------~~~~~~~ 247 (939)
T 1q2l_A 174 KFSGGNLETLSDKPGNPVQQALKDFHEKYYSANLMKAVIYSNKPLPELAKMAADTFGRVPNKESKKP------EITVPVV 247 (939)
T ss_dssp SCCSCCHHHHSCBTTBCHHHHHHHHHHHHCCTTTCEEEEEESSCHHHHHHHHHHTGGGSCCCCCCCC------CCCSCSC
T ss_pred cCCCCCHHHHhcCCCchHHHHHHHHHHhccCHhheEEEEEcCCCHHHHHHHHHHHhhhhccCCCCCC------CCCCCCC
Confidence 999999999999 9999999999999999999999999 9999999999999999765321110 0000100
Q ss_pred CCcccCceeEEecCCCCCCCCCCCCcceeEEEEeccCCCCCC-CchHHHHHHHhhcCCCCCCCCCCCCCcccHHHHHHhh
Q psy14217 293 SATYTGGIVKEECNIPTFAGTSGLPELSHVVIGLEGVSHQDP-DFVPACVLNILMGGGGSFSAGGPGKGMYTRLYTNVLN 371 (529)
Q Consensus 293 ~~~~~~~~~~~~~~~~~~~g~~~~~~~~~v~i~~~~~~~~~~-~~~~~~vl~~lL~~~~~f~~~~~g~g~~srL~~~lR~ 371 (529)
.....+..+..... .+++.+.++|+.|...+. +..++.+++.+||++++ ++|+++||+
T Consensus 248 ~~~~~~~~~~~~~~----------~~~~~l~i~~~~~~~~~~~~~~~~~~l~~lLg~~~~-----------s~L~~~L~~ 306 (939)
T 1q2l_A 248 TDAQKGIIIHYVPA----------LPRKVLRVEFRIDNNSAKFRSKTDELITYLIGNRSP-----------GTLSDWLQK 306 (939)
T ss_dssp CGGGSSEEEEECCS----------SCCCEEEEEEEEECCGGGGGGCHHHHHHHHHHCCCT-----------TSHHHHHHH
T ss_pred CHHHcCEEEEEEeC----------CCCcEEEEEEEcCChHHhhhhCHHHHHHHHhcCCCC-----------CcHHHHHHH
Confidence 01111122222222 146889999998876554 67789999999997644 899999996
Q ss_pred hcCceeEEEEec--cccCCcccEEEEEEeCC---CCHHHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHHHHHhc-CCh
Q psy14217 372 RHHWMFSATAYN--HAYADTGLFCIHASAPP---SNVKNIVDVLVKELVTMAG-PIDADELSRAKKQLQSMLLMNL-EAR 444 (529)
Q Consensus 372 ~~gl~Y~~~a~~--~~~~~~g~f~i~~~~~p---~~~~~~~~~i~~~l~~l~~-~it~~el~~ak~~l~~~~~~~~-~~~ 444 (529)
.||+|+++++. ..+.+.|.|.|++.+.+ ++.+++++.+.++|+++++ |++++||+++|+.+..++.... +++
T Consensus 307 -~gl~~~~~a~~~~~~~~~~g~f~i~~~~~~~~~~~~~~~~~~i~~~l~~l~~~g~~~~el~~~k~~~~~~~~~~~~~~~ 385 (939)
T 1q2l_A 307 -QGLVEGISANSDPIVNGNSGVLAISASLTDKGLANRDQVVAAIFSYLNLLREKGIDKQYFDELANVLDIDFRYPSITRD 385 (939)
T ss_dssp -TTCEEEEEEEEESSTTSSEEEEEEEEEECHHHHHTHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHSCCCCCS
T ss_pred -cCCchheeeccccccCCCceEEEEEEEEChhhhhhHHHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhcccccCCCCh
Confidence 59999999874 34567899999999887 4899999999999999986 8999999999999999998776 566
Q ss_pred HHHHHHHHHHHHhcCCCCChhHHHHHHccCCHHHHHHHHHHhccCCCeEEEEcCCCC
Q psy14217 445 PAVFEDVGRQVLATGHRKRPSTYIESIENVTEDDIRRVASRLLTSQPSVAARGELIN 501 (529)
Q Consensus 445 ~~~~~~l~~~~l~~~~~~~~~~~~~~i~~vT~edv~~~a~~~l~~~~~~~v~G~~~~ 501 (529)
...+..++..++ ....+...+....++++|+++|+++++++...+.+++++|+...
T Consensus 386 ~~~~~~l~~~~~-~~~~~~~~~~~~~i~~vt~~~i~~~~~~l~~~~~~~~~~~p~~~ 441 (939)
T 1q2l_A 386 MDYVEWLADTMI-RVPVEHTLDAVNIADRYDAKAVKERLAMMTPQNARIWYISPKEP 441 (939)
T ss_dssp HHHHHHHHHHHT-TSCGGGTTTTTTCCCCCCHHHHHHHHHHCSGGGCEEEEECTTCC
T ss_pred HHHHHHHHHHhh-cCCHHHHhcCchhhhccCHHHHHHHHHhcCHHHcEEEEEcCCCC
Confidence 677777777654 32223333445679999999999999885444788899998654
No 14
>3cww_A Insulysin, insulin-degrading enzyme, insulinase; A-beta degrading enzyme, criptidase, kinins, hydrolase; 1.96A {Homo sapiens} PDB: 3ofi_A 2wc0_A 3h44_A 3n56_A 3n57_A 2wby_A 3qz2_A 3e4z_A 2wk3_A 3e4a_A* 2g47_A 2g48_A 2g49_A 2g54_A 2g56_A 2jbu_A 3e50_A 2jg4_A 3hgz_A 2yb3_A* ...
Probab=100.00 E-value=2e-46 Score=427.93 Aligned_cols=408 Identities=16% Similarity=0.181 Sum_probs=335.7
Q ss_pred CCCCCeEEEEcCCCCEEEEeec-CCCeEEEEEEEccCCCCCCCCCCcHHHHHHHHhhcCCCCCCCHHHHHHHHHHhCCEe
Q psy14217 59 DNDRNTQVTTLPNGLRVASENR-FGSFCTIGVIIDSGSRYEQPYPSGVSHFLEKLAFNSTSEYVNKDAIAQSLEKIGGIC 137 (529)
Q Consensus 59 ~~~~~~~~~~L~NGl~v~~~~~-~~~~~~i~l~~~~G~~~e~~~~~Gla~ll~~l~~~g~~~~~~~~~l~~~l~~~g~~~ 137 (529)
.+++.++.++|+||++|++.+. ..+++.+.++|++|++.||.+..|++|++|||+|.||.+|+..+++.++++.+|+.+
T Consensus 30 ~d~~~~~~~~L~NGl~v~~~~~~~~~~~~~~l~v~~Gs~~ep~~~~GlAH~lEHmlf~GT~~~p~~~~~~~~l~~~Gg~~ 109 (990)
T 3cww_A 30 EDKREYRGLELANGIKVLLISDPTTDKSSAALDVHIGSLSDPPNIAGLSHFLQHMLFLGTKKYPKENEYSQFLSEHAGSS 109 (990)
T ss_dssp TCCCEEEEEEETTCCEEEEEECTTCSEEEEEEEESCCGGGSCTTSTTHHHHHHHHGGGCBSSSCSTTHHHHHHHTTTCEE
T ss_pred CCCcceEEEEeCCCCEEEEEECCCCCcEEEEEEecccCCCCCCCCCChHHHHHHHHhcCCCCCCCcchHHHHHHHcCCce
Confidence 5678899999999999997654 468999999999999999999999999999999999999987779999999999999
Q ss_pred eEeeccceEEEEEEecCCCHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHhhcCCchHHHHHHHHHHHcCCCCCCC
Q psy14217 138 DCLSSRDTFIYAASAATSGLDTVMKILGDVVLRPKFSKEEINMARQTIQFELENYQMRPEQETLLMDMIHAAAYKDNTLG 217 (529)
Q Consensus 138 ~~~t~~~~~~~~~~~~~~~l~~~l~ll~~~l~~p~f~~~~~~~~k~~~~~el~~~~~~p~~~~~~~~~l~~~~~~~~~~~ 217 (529)
|++|+.+.|+|.+++++++++.+|+++++++.+|.|++++|+++|..+.+|++...++| ...+.+.+...+|++||++
T Consensus 110 NA~T~~d~T~y~~~~~~~~l~~~l~~~~d~~~~p~f~~~~~~~E~~~V~~E~~~~~~~~--~~~~~~~~~~~~~~~~py~ 187 (990)
T 3cww_A 110 NAFTSGEHTNYYFDVSHEHLEGALDRFAQFFLSPLFDESAKDREVNAVDSEHEKNVMND--AWRLFQLEKATGNPKHPFS 187 (990)
T ss_dssp EEEECSSCEEEEEEEEGGGHHHHHHHHHGGGTCBCCCHHHHHHHHHHHHHHHHHHHTCH--HHHHHHHHHHTSCTTSGGG
T ss_pred eEEECCCceEEEEEeCHHHHHHHHHHHHHHHhCcCCCHHHHHHHHHHHHHHHHhccCCh--HHHHHHHHHHhcCCCCCcc
Confidence 99999999999999999999999999999999999999999999999999999877765 5678888889999999999
Q ss_pred CCCCCCchhcCCC-------CHHHHHHHHHhhcCCCCeEEEEec-CCHHHHHHHHHhhhccCCCccccccccccCCCCCC
Q psy14217 218 LPKLCPPASIGVI-------NNNTLFTYLKNYYTPTRMVVAGIG-VEHEALVEAANKYFVDKQPVWIQDKSLVLTDKPVI 289 (529)
Q Consensus 218 ~~~~g~~~~l~~i-------~~~~l~~f~~~~~~~~~~~l~ivG-~~~~~l~~~i~~~f~~l~~~~~~~~~~~~~~~~~~ 289 (529)
++.+|+.++|.++ +.++|++||++||+|+||+++++| +++++++++++++|+.+++.... .+..
T Consensus 188 ~~~~G~~~~l~~~~~~~~~~~~~~l~~f~~~~Y~p~n~~l~v~Gd~~~~~~~~~i~~~f~~~~~~~~~--------~~~~ 259 (990)
T 3cww_A 188 KFGTGNKYTLETRPNQEGIDVRQELLKFHSAYYSSNLMAVVVLGRESLDDLTNLVVKLFSEVENKNVP--------LPEF 259 (990)
T ss_dssp CCCSCCHHHHTHHHHHTTCCHHHHHHHHHHHHCCGGGEEEEEEESSCHHHHHHHHHHHHTTSCCCCCC--------CCCC
T ss_pred cCCCCCHHHHhhccccccchHHHHHHHHHHHhCCHhheEEEEEcCCCHHHHHHHHHHHhcCCccCCCC--------CCCC
Confidence 9999999999999 999999999999999999999999 99999999999999997653111 0111
Q ss_pred CC-CC-CcccCceeEEecCCCCCCCCCCCCcceeEEEEeccCCCCC-CCchHHHHHHHhhcCCCCCCCCCCCCCcccHHH
Q psy14217 290 DT-SS-ATYTGGIVKEECNIPTFAGTSGLPELSHVVIGLEGVSHQD-PDFVPACVLNILMGGGGSFSAGGPGKGMYTRLY 366 (529)
Q Consensus 290 ~~-~~-~~~~~~~~~~~~~~~~~~g~~~~~~~~~v~i~~~~~~~~~-~~~~~~~vl~~lL~~~~~f~~~~~g~g~~srL~ 366 (529)
.. +. ....+...... +. .+++.+.++|+.+...+ .+..++.+++.+||+++. .+ |+
T Consensus 260 ~~~~~~~~~~~~~~~~~-~~---------~~~~~l~~~~~~~~~~~~~~~~~~~~l~~lLg~~~~----------~s-l~ 318 (990)
T 3cww_A 260 PEHPFQEEHLKQLYKIV-PI---------KDIRNLYVTFPIPDLQKYYKSNPGHYLGHLIGHEGP----------GS-LL 318 (990)
T ss_dssp CSCSSCGGGSSEEEEEC-CS---------SSCCEEEEEEEECCCGGGTTTCHHHHHHHHHTCCST----------TC-HH
T ss_pred CCCCCChHHcCeEEEEE-EC---------CCCcEEEEEEEcCChhhhhhhCHHHHHHHHhcCCCC----------Cc-HH
Confidence 10 00 11111222222 21 24689999999887653 578899999999986321 15 67
Q ss_pred HHHhhhcCceeEEEEeccc-cCCcccEEEEEEeCC---CCHHHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHHHHHh-
Q psy14217 367 TNVLNRHHWMFSATAYNHA-YADTGLFCIHASAPP---SNVKNIVDVLVKELVTMAG-PIDADELSRAKKQLQSMLLMN- 440 (529)
Q Consensus 367 ~~lR~~~gl~Y~~~a~~~~-~~~~g~f~i~~~~~p---~~~~~~~~~i~~~l~~l~~-~it~~el~~ak~~l~~~~~~~- 440 (529)
..||+ .||+|++++++.. ..+.|.|.|++.+.+ ++.+++++.+.++|+++++ |+++++|+++|......+...
T Consensus 319 ~~Lr~-~g~~~~~~a~~~~~~~~~~~f~i~~~~~~~g~~~~~~~~~~i~~~l~~l~~~g~~~~~l~~~~~~~~~~~~~~~ 397 (990)
T 3cww_A 319 SELKS-KGWVNTLVGGQKAGARGFMFFIINVDLTEEGLLHVEDIILHMFQYIQKLRAEGPQEWVFQELKDLNAVAFRFKD 397 (990)
T ss_dssp HHHHH-TTSCSCEEEEEEEEETTEEEEEEEEECCHHHHHTHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHTCC
T ss_pred HHHHH-CCCcceeeeccccCCCCccEEEEEEEEChHHhhhHHHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhcccCC
Confidence 79997 5999999988764 456799999999765 3899999999999999986 899999999999888887654
Q ss_pred cCChHHHHHHHHHHHHhcCCCCChhHHHHHHccCCHHHHHHHHHHhccCCCeEEEEcCC
Q psy14217 441 LEARPAVFEDVGRQVLATGHRKRPSTYIESIENVTEDDIRRVASRLLTSQPSVAARGEL 499 (529)
Q Consensus 441 ~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~i~~vT~edv~~~a~~~l~~~~~~~v~G~~ 499 (529)
.+++..++..++.++ ....+.......+.|+++|+++|+++++++...+.+++++|+.
T Consensus 398 ~~~~~~~~~~l~~~~-~~~~~~~~~~~~~~i~~~t~~~i~~~~~~l~~~~~~~~~~~p~ 455 (990)
T 3cww_A 398 KERPRGYTSKIAGIL-HYYPLEEVLTAEYLLEEFRPDLIEMVLDKLRPENVRVAIVSKS 455 (990)
T ss_dssp CCCHHHHHHHHHHHT-TTSCGGGTTTTTTCCCCCCHHHHHHHHTTCSGGGCEEEEECGG
T ss_pred cCCHHHHHHHHHHHH-hhCCHHHHhccchhhhcCCHHHHHHHHHhcCHhHEEEEEEcCC
Confidence 456666666665543 2222222233447799999999999999755557788888864
No 15
>2fge_A Atprep2;, zinc metalloprotease (insulinase family); peptidasome, protease-peptide complex, hydrolase, plant protein; 2.10A {Arabidopsis thaliana} SCOP: d.185.1.1 d.185.1.1 d.185.1.1 d.185.1.1
Probab=100.00 E-value=6.5e-45 Score=415.43 Aligned_cols=406 Identities=14% Similarity=0.146 Sum_probs=326.5
Q ss_pred CCCCeEEEEcCCCCEEEEeecCCCeEEEEEEEccCCCCCCCCCCcHHHHHHHHhhcCCCCCCCHHHHHHHHHH-hCCEee
Q psy14217 60 NDRNTQVTTLPNGLRVASENRFGSFCTIGVIIDSGSRYEQPYPSGVSHFLEKLAFNSTSEYVNKDAIAQSLEK-IGGICD 138 (529)
Q Consensus 60 ~~~~~~~~~L~NGl~v~~~~~~~~~~~i~l~~~~G~~~e~~~~~Gla~ll~~l~~~g~~~~~~~~~l~~~l~~-~g~~~~ 138 (529)
+...++..+|+||++|++.+.+.... ++.+|++.|+.+..|+||++|||+|+||.+|+..+.+.+.++. .|+.+|
T Consensus 34 ~~~~~~~~~l~nGl~v~~~~~~~~~~----~~~vg~~~e~~~~~GlAH~lEHm~f~Gt~~~p~~~~~~~~l~~~~g~~~N 109 (995)
T 2fge_A 34 KSKAILFKHKKTGCEVMSVSNEDENK----VFGVVFRTPPKDSTGIPHILQHSVLCGSRKYPVKEPFVELLKGSLHTFLN 109 (995)
T ss_dssp TEEEEEEEETTTCCEEEEEECSCSSE----EEEEEEECCCSSSSCHHHHHHHHTTSCBTTBCSSCHHHHHHHHCCEEEEC
T ss_pred cceEEEEEECCCCCEEEEEEcCCCcc----EEEEEeCCCCcCCCChHHHHHHHHhCCCCCCCCccHHHHHHHhccCCCce
Confidence 34566778999999999876655333 3678999999999999999999999999999876657777765 588899
Q ss_pred EeeccceEEEEEEec-CCCHHHHHHHHHHhhcCCCC--CHHHHHHH---------------HHHHHHHHHHhhcCCchHH
Q psy14217 139 CLSSRDTFIYAASAA-TSGLDTVMKILGDVVLRPKF--SKEEINMA---------------RQTIQFELENYQMRPEQET 200 (529)
Q Consensus 139 ~~t~~~~~~~~~~~~-~~~l~~~l~ll~~~l~~p~f--~~~~~~~~---------------k~~~~~el~~~~~~p~~~~ 200 (529)
++|+.|+|+|.+++. .++++.+|+++.|++.+|.| ++++|+++ |+.+.+|++...++| ..
T Consensus 110 A~T~~d~T~y~~~~~~~~~~~~~l~~~~d~~~~p~~~~~~~~~~~E~~~~e~~~~~~~~~~r~vV~~E~~~~~~~p--~~ 187 (995)
T 2fge_A 110 AFTYPDRTCYPVASTNTKDFYNLVDVYLDAVFFPKCVDDAHTFQQEGWHYELNDPSEDISYKGVVFNEMKGVYSQP--DN 187 (995)
T ss_dssp CEECSSEEEEEEEESSHHHHHHHHHHHHHHHHSBGGGTSSHHHHHHTCEEECSCTTSCCEEECHHHHHHHHHTTSH--HH
T ss_pred eeECCCceEEEEecCCHHHHHHHHHHHHHHHhCCCCCCCHHHHHHhhhhhhcccccccccccchHHHHHHhhhCCH--HH
Confidence 999999999999886 46899999999999999999 99999999 899999999887766 68
Q ss_pred HHHHHHHHHcCCCCCCCCCCCCCchhcCCCCHHHHHHHHHhhcCCCCeEEEEec-CCHHHHHHHHHhhhccCC--Ccccc
Q psy14217 201 LLMDMIHAAAYKDNTLGLPKLCPPASIGVINNNTLFTYLKNYYTPTRMVVAGIG-VEHEALVEAANKYFVDKQ--PVWIQ 277 (529)
Q Consensus 201 ~~~~~l~~~~~~~~~~~~~~~g~~~~l~~i~~~~l~~f~~~~~~~~~~~l~ivG-~~~~~l~~~i~~~f~~l~--~~~~~ 277 (529)
++.+.+.+.+|++|||+++.+|+.++|++++.++|++||++||+|+||+|+|+| +|+++++++++++|+.++ +....
T Consensus 188 ~~~~~~~~~~~~~~py~~~~~G~~~~i~~~t~~~l~~f~~~~Y~p~n~~l~v~Gd~d~~~~~~~i~~~f~~~~~~~~~~~ 267 (995)
T 2fge_A 188 ILGRIAQQALSPENTYGVDSGGDPKDIPNLTFEEFKEFHRQYYHPSNARIWFYGDDDPVHRLRVLSEYLDMFEASPSPNS 267 (995)
T ss_dssp HHHHHHHHHHCTTSGGGSCTTCCTTTGGGCCHHHHHHHHHHHSSGGGEEEEEEESSCHHHHHHHHHHHHTTCCCCSHHHH
T ss_pred HHHHHHHHHhCCCCCCCCCCCCChHhhhhcCHHHHHHHHHHhCCccceEEEEEcCCCHHHHHHHHHHHHhhCCccccCCC
Confidence 999999999999999999999999999999999999999999999999999999 999999999999999976 32110
Q ss_pred ccccccCCCCCCCCCCCcccCc---eeEEec--CCCCCCCCCCCCcceeEEEEeccCCCC--CCCchHHHHHHHhhcCCC
Q psy14217 278 DKSLVLTDKPVIDTSSATYTGG---IVKEEC--NIPTFAGTSGLPELSHVVIGLEGVSHQ--DPDFVPACVLNILMGGGG 350 (529)
Q Consensus 278 ~~~~~~~~~~~~~~~~~~~~~~---~~~~~~--~~~~~~g~~~~~~~~~v~i~~~~~~~~--~~~~~~~~vl~~lL~~~~ 350 (529)
.. .+.. +.+... ...+.. +.+ ..+++.+.++|+.+... +++..++.+++.+|+++.
T Consensus 268 ~~------~~~~----~~~~~~~~~~~~~~~~~~~~-------~~~~~~l~~~~~~~~~~~~~~~~~a~~vl~~~Lg~~~ 330 (995)
T 2fge_A 268 SK------IKFQ----KLFSEPVRLVEKYPAGRDGD-------LKKKHMLCVNWLLSEKPLDLQTQLALGFLDHLMLGTP 330 (995)
T ss_dssp SC------CCCC----CCCSSCEEEEEEEECCSSSC-------GGGCEEEEEEEECCSSCCCHHHHHHHHHHHHHHHSST
T ss_pred cc------cCCC----CCCCCCceEEEecccCCCCC-------ccCccEEEEEEEcCCCcCCHHHHHHHHHHHHHHcCCC
Confidence 00 0100 111111 111111 010 12578999999998866 478999999999998653
Q ss_pred CCCCCCCCCCcccHHHHHHhhhcCceeEEEEe-ccccCCcccEEEEE-EeCCCCHHHHHHHHHHHHHHhcC-CCCHHHHH
Q psy14217 351 SFSAGGPGKGMYTRLYTNVLNRHHWMFSATAY-NHAYADTGLFCIHA-SAPPSNVKNIVDVLVKELVTMAG-PIDADELS 427 (529)
Q Consensus 351 ~f~~~~~g~g~~srL~~~lR~~~gl~Y~~~a~-~~~~~~~g~f~i~~-~~~p~~~~~~~~~i~~~l~~l~~-~it~~el~ 427 (529)
+ |||+++||++ ||+|+++++ +..+.+.|.|.|.+ .+++++++++++.+.++|+++++ |++++||+
T Consensus 331 ~-----------S~L~~~l~e~-gl~~~~~~~~~~~~~~~~~f~i~~~~~~~~~~~~~~~~i~~~l~~l~~~g~~~~el~ 398 (995)
T 2fge_A 331 A-----------SPLRKILLES-GLGEALVSSGLSDELLQPQFGIGLKGVSEENVQKVEELIMDTLKKLAEEGFDNDAVE 398 (995)
T ss_dssp T-----------SHHHHHHHHT-TSCSEECSCEEECSSSSCEEEEEEEEECGGGHHHHHHHHHHHHHHHHHHCCCHHHHH
T ss_pred C-----------CHHHHHHHhc-CCCcceeeccccccccCeEEEEEEEeCCHHHHHHHHHHHHHHHHHHHHhCCCHHHHH
Confidence 3 9999999986 999999876 65556689999864 58899999999999999999986 89999999
Q ss_pred HHHHHHHHHHHHhc--CChH--HHHHHHHHHHHhcCCCCChhHHHHHHccCCH----H----HHHHHHHHhccC--CCeE
Q psy14217 428 RAKKQLQSMLLMNL--EARP--AVFEDVGRQVLATGHRKRPSTYIESIENVTE----D----DIRRVASRLLTS--QPSV 493 (529)
Q Consensus 428 ~ak~~l~~~~~~~~--~~~~--~~~~~l~~~~l~~~~~~~~~~~~~~i~~vT~----e----dv~~~a~~~l~~--~~~~ 493 (529)
++|+.+..++.... +++. ..+..+...++.++.+....++.+.++++++ + +|++++++|+.+ +..+
T Consensus 399 ~ak~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~l~~~~~~~~ 478 (995)
T 2fge_A 399 ASMNTIEFSLRENNTGSFPRGLSLMLQSISKWIYDMDPFEPLKYTEPLKALKTRIAEEGSKAVFSPLIEKLILNNSHRVT 478 (995)
T ss_dssp HHHHHHHHHHHHCCCTTSCHHHHHHHHHHHHHTTTSCSSGGGCCHHHHHHHHHHHHHHCHHHHHHHHHHHHTTTCCCEEE
T ss_pred HHHHHHHHHHHhccCCCCccHHHHHHHHHHHHhcCCChHHHhhhHHHHHHHHHHhcCCccHHHHHHHHHHHhcCCCceEE
Confidence 99999999987654 2334 3456666666555555555555667776666 8 899999999965 3456
Q ss_pred EEEcCCC
Q psy14217 494 AARGELI 500 (529)
Q Consensus 494 ~v~G~~~ 500 (529)
+++++..
T Consensus 479 ~~~~p~~ 485 (995)
T 2fge_A 479 IEMQPDP 485 (995)
T ss_dssp EEEEEET
T ss_pred EEEEcCc
Confidence 6666644
No 16
>3s5m_A Falcilysin; M16 metalloprotease, peptidase, hydrolase; 1.55A {Plasmodium falciparum} PDB: 3s5i_A 3s5k_A 3s5h_A
Probab=100.00 E-value=1.5e-42 Score=392.14 Aligned_cols=402 Identities=12% Similarity=0.105 Sum_probs=313.3
Q ss_pred CCCCeEEEEcCCCCEEEEeecCCC-eEEEEEEEccCCCCCCCCCCcHHHHHHHHhhcCCCCCCCHHHHHHHHHH--hCCE
Q psy14217 60 NDRNTQVTTLPNGLRVASENRFGS-FCTIGVIIDSGSRYEQPYPSGVSHFLEKLAFNSTSEYVNKDAIAQSLEK--IGGI 136 (529)
Q Consensus 60 ~~~~~~~~~L~NGl~v~~~~~~~~-~~~i~l~~~~G~~~e~~~~~Gla~ll~~l~~~g~~~~~~~~~l~~~l~~--~g~~ 136 (529)
..+.++...|+||++|++.+++.+ .+. ..+.+|++.+|++..|++|++|||+|+||.+++.. ++...++. +|+.
T Consensus 83 ~~~~~~~~~l~nGl~vl~i~~~~~~~~~--~~f~vg~~tep~~~~GvAH~lEHmlf~GS~k~p~~-e~~~~l~~~slG~~ 159 (1193)
T 3s5m_A 83 KMTYTVYQHKKAKTQVISLGTNDPLDVE--QAFAFYVKTLTHSGKGIPHILEHSVLSGSKNYNYK-NSIGLLEKGTLHTH 159 (1193)
T ss_dssp TEEEEEEEETTTCCEEEEEEECCTTCCC--EEEEEEEECCCSSSSCHHHHHHHHTTSCBTTBCCT-THHHHHHHSCCEEE
T ss_pred cccceEEEECCCCCEEEEEECCCCCeEE--EEEEEEECCCCCCCchHHHHHHHHHhCCCCCCChh-hHHHHHHHhccCce
Confidence 346678889999999998665443 222 34566777899999999999999999999999765 66777777 7999
Q ss_pred eeEeeccceEEEEEEecC-CCHHHHHHHHHHhhcCCCCCHHH--HHHH-----------------------------HHH
Q psy14217 137 CDCLSSRDTFIYAASAAT-SGLDTVMKILGDVVLRPKFSKEE--INMA-----------------------------RQT 184 (529)
Q Consensus 137 ~~~~t~~~~~~~~~~~~~-~~l~~~l~ll~~~l~~p~f~~~~--~~~~-----------------------------k~~ 184 (529)
+|++|+.|+|+|.+++.+ ++++.+|+++.|++.+|.|++++ |.++ |+.
T Consensus 160 lNA~T~~D~T~Y~~~~~~~~~l~~~L~l~~D~v~~P~l~~~~~~F~qE~~~~E~e~~~~~Er~~~~~~~~~~~~l~~k~v 239 (1193)
T 3s5m_A 160 LNAYTFNDRTVYMAGSMNNKDFFNIMGVYMDSVFQPNVLENKYIFETEGWTYEVEKLKEDEKGKAEIPQMKDYKVSFNGI 239 (1193)
T ss_dssp EEEEECSSEEEEEEEESSHHHHHHHHHHHHHHHHSBGGGTCHHHHHHHTCEEEEEECCTTTTTCTTSCEETTEEEEEECH
T ss_pred EEeEEcCCeEEEEEEecCHHHHHHHHHHHHHHHhCCCCccccchhhhhhhhhhhhccchhhhccccccccccchhhHHHH
Confidence 999999999999999987 89999999999999999999887 8776 568
Q ss_pred HHHHHHHhhcCCchHHHHHHHHHHHcCCCCCCCCCCCCCchhcCCCCHHHHHHHHHhhcCCCCeEEEEec-CCHHHHHHH
Q psy14217 185 IQFELENYQMRPEQETLLMDMIHAAAYKDNTLGLPKLCPPASIGVINNNTLFTYLKNYYTPTRMVVAGIG-VEHEALVEA 263 (529)
Q Consensus 185 ~~~el~~~~~~p~~~~~~~~~l~~~~~~~~~~~~~~~g~~~~l~~i~~~~l~~f~~~~~~~~~~~l~ivG-~~~~~l~~~ 263 (529)
+.+|++...++| ...+.+.+.+.+|++|||+++..|++++|.+++.++|++||++||+|+|++|+++| +++++++++
T Consensus 240 V~~E~k~~~~~p--~~~~~~~l~~~lf~~hpY~~~~~G~~e~I~~lt~edl~~F~~~~Y~P~Na~l~v~Gdid~~~~~~~ 317 (1193)
T 3s5m_A 240 VYNEMKGALSSP--LEDLYHEEMKYMFPDNVHSNNSGGDPKEITNLTYEEFKEFYYKNYNPKKVKVFFFSKNNPTELLNF 317 (1193)
T ss_dssp HHHHHHHHTTCH--HHHHHHHHHHHHCTTSGGGSCTTCCHHHHTTCCHHHHHHHHHHHSCTTTCEEEEEESSCTHHHHHH
T ss_pred HHHHHHHhhCCH--HHHHHHHHHHHhCCCCCCCCCCCCCHHHHhhCCHHHHHHHHHHhcCccceEEEEEecCCHHHHHHH
Confidence 999999887776 68999999999999999999999999999999999999999999999999999999 999999999
Q ss_pred HHhhhccCCCccccccccccCCCCCCCCCCCcccCceeEEecCCCCCCCCCCCCcceeEEEEeccCCC-----C------
Q psy14217 264 ANKYFVDKQPVWIQDKSLVLTDKPVIDTSSATYTGGIVKEECNIPTFAGTSGLPELSHVVIGLEGVSH-----Q------ 332 (529)
Q Consensus 264 i~~~f~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~v~i~~~~~~~-----~------ 332 (529)
++++|+.++.+..... + .......++...+..+....+... ...++++.++|..+.. +
T Consensus 318 v~~~f~~~~~~~~~~~---~--~~~~~~~~~~~~~~~v~~~~~~~~------~~~q~~l~~~~~~~~~~~~~~d~~~~~~ 386 (1193)
T 3s5m_A 318 VDQYLGQLDYSKYRDD---A--VESVEYQTYKKGPFYIKKKYGDHS------EEKENLVSVAWLLNPKVDKTNNHNNNHS 386 (1193)
T ss_dssp HHHHHTTCCGGGCCCC---C--CCCCCCCBCCCCCEEEEEEEECCC------SSCCEEEEEEEESSCBCC----------
T ss_pred HHHHhccCCCCCCCcc---c--ccccCCCCCCCCCeEEEEecCCCC------CccccEEEEEEEecCccccccccccccc
Confidence 9999999654311100 0 001111111111222222111100 0257899999998642 2
Q ss_pred -----------------------CCCchHHHHHHHhhcCCCCCCCCCCCCCcccHHHHHHhhhcCceeEEE-EeccccCC
Q psy14217 333 -----------------------DPDFVPACVLNILMGGGGSFSAGGPGKGMYTRLYTNVLNRHHWMFSAT-AYNHAYAD 388 (529)
Q Consensus 333 -----------------------~~~~~~~~vl~~lL~~~~~f~~~~~g~g~~srL~~~lR~~~gl~Y~~~-a~~~~~~~ 388 (529)
+++.+++.||+.+|+|+.+ ||||++||+ .|++|+++ +++.....
T Consensus 387 ~~~~~~~~~y~~~~~~~~~~~~~~~d~~al~vL~~iLggg~s-----------SrL~~~L~e-~gLa~~v~~~~~~~~~~ 454 (1193)
T 3s5m_A 387 NNQSSENNGYSNGSHSSDLSLENPTDYFVLLIINNLLIHTPE-----------SVLYKALTD-CGLGNNVIDRGLNDSLV 454 (1193)
T ss_dssp ------------CCCCSTTCCCSHHHHHHHHHHHHHHHSSTT-----------SHHHHHHHH-HCSCSEEEEEEEECSSS
T ss_pred ccccccccccccccccccccccCccHHHHHHHHHHHHCCCCC-----------CHHHHHHHh-cCCeeeecccccccccC
Confidence 3578999999999997644 999999998 59999998 67777777
Q ss_pred cccEEEEEE-eCCCC--------H-HHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHHHHHh-cCChHH--HHHHHHHH
Q psy14217 389 TGLFCIHAS-APPSN--------V-KNIVDVLVKELVTMAG-PIDADELSRAKKQLQSMLLMN-LEARPA--VFEDVGRQ 454 (529)
Q Consensus 389 ~g~f~i~~~-~~p~~--------~-~~~~~~i~~~l~~l~~-~it~~el~~ak~~l~~~~~~~-~~~~~~--~~~~l~~~ 454 (529)
.+.|.|++. +++++ + +++.+.|.++|+++.+ |++++||+++|+++..++... .+++.. .+..+...
T Consensus 455 ~~~f~i~~~g~~~~~~~~~~~~~~~~~~~~~I~~~L~~l~~~gi~~~ele~a~~~le~~~re~~~~~~~gl~~~~~~~~~ 534 (1193)
T 3s5m_A 455 QYIFSIGLKGIKRNNEKIKNFDKVHYEVEDVIMNALKKVVKEGFNKSAVEASINNIEFILKEANLKTSKSIDFVFEMTSK 534 (1193)
T ss_dssp SCEEEEEEEEECTTCTTCSCGGGHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHTTSTTHHHHHHHHHHHH
T ss_pred CcEEEEEEecCChhhccccchhhHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhccCCCCcHHHHHHHHHHH
Confidence 889999975 56554 5 7999999999999987 899999999999999998774 344432 23444555
Q ss_pred HHhcCCCCC---hhHHHHHHccCC---HHHHHHHHHHhccC
Q psy14217 455 VLATGHRKR---PSTYIESIENVT---EDDIRRVASRLLTS 489 (529)
Q Consensus 455 ~l~~~~~~~---~~~~~~~i~~vT---~edv~~~a~~~l~~ 489 (529)
++..+++.. .++.++.++..+ ++++++++++||..
T Consensus 535 w~~~~dp~~~l~~~~~l~~l~~~~~~~~~~~~~li~~yll~ 575 (1193)
T 3s5m_A 535 LNYNRDPLLIFEFEKYLNIVKNKIKNEPMYLEKFVEKHFIN 575 (1193)
T ss_dssp HHTTCCTTTTTSHHHHHHHHHHHHHHSTTHHHHHHHHHTTT
T ss_pred HHcCCCHHHHHHHHHHHHHHHHHhhcChHHHHHHHHHHhcc
Confidence 566677655 344455555443 45999999999854
No 17
>3cx5_B Cytochrome B-C1 complex subunit 2, mitochondrial; complex III, electron transfer complex, cytochrome BC1 complex, mitochondrialtransmembrane complex; HET: M3L SUC 6PH UMQ HEM SMA 8PE 9PE CN5 7PH CN3; 1.90A {Saccharomyces cerevisiae} SCOP: d.185.1.1 d.185.1.1 PDB: 1kb9_B* 1kyo_B* 1p84_B* 2ibz_B* 1ezv_B* 3cxh_B*
Probab=100.00 E-value=1.4e-41 Score=343.05 Aligned_cols=349 Identities=17% Similarity=0.236 Sum_probs=286.1
Q ss_pred CEEEEeecCCCeEEEEEEEccCCCCCCCCCCcHHHHHHHHhhcCCCCCCCHHHHHHHHHHhCCEeeEeeccceEEEEEEe
Q psy14217 73 LRVASENRFGSFCTIGVIIDSGSRYEQPYPSGVSHFLEKLAFNSTSEYVNKDAIAQSLEKIGGICDCLSSRDTFIYAASA 152 (529)
Q Consensus 73 l~v~~~~~~~~~~~i~l~~~~G~~~e~~~~~Gla~ll~~l~~~g~~~~~~~~~l~~~l~~~g~~~~~~t~~~~~~~~~~~ 152 (529)
++|++.+...+.+++.+++++|+++| ...|++|+++||+|+||.++ +..++.+.++.+|+.+|++++.+++.|++++
T Consensus 1 l~v~~~~~~~~~v~~~~~~~~Gs~~e--~~~G~ah~leh~lf~Gt~~~-~~~~l~~~l~~~G~~~na~t~~~~t~~~~~~ 77 (352)
T 3cx5_B 1 LTVSARDAPTKISTLAVKVHGGSRYA--TKDGVAHLLNRFNFQNTNTR-SALKLVRESELLGGTFKSTLDREYITLKATF 77 (352)
T ss_dssp CEEEEECCSCSEEEEEEEESCSGGGC--SSTTHHHHHHHHTTSCBSSS-CHHHHHHHHHHHTCEEEEEECSSCEEEEEEE
T ss_pred CEEEEeeCCCceEEEEEEEeeeccCC--CcccHHHHHHHHhccCcCCC-CHHHHHHHHHHhCCeEEEEEccceEEEEEEe
Confidence 58888888889999999999999987 37899999999999999997 6789999999999999999999999999999
Q ss_pred cCCCHHHHHHHHHHhhcCCCCCHHHHH-HHHHHHHHHHHHhhcCCchHHHHHHHHHHHcCCCCCCCCCCCCCchhcCCCC
Q psy14217 153 ATSGLDTVMKILGDVVLRPKFSKEEIN-MARQTIQFELENYQMRPEQETLLMDMIHAAAYKDNTLGLPKLCPPASIGVIN 231 (529)
Q Consensus 153 ~~~~l~~~l~ll~~~l~~p~f~~~~~~-~~k~~~~~el~~~~~~p~~~~~~~~~l~~~~~~~~~~~~~~~g~~~~l~~i~ 231 (529)
++++++.+|+++.+++.+|.|++++|+ ++|+.+.+|++...++| ...+.+.+++.+|+ ||++++.. .++|++++
T Consensus 78 ~~~~l~~~l~ll~d~~~~p~f~~~~~~~~~k~~v~~e~~~~~~~p--~~~~~~~~~~~~~~-~p~~~~~~--~~~l~~it 152 (352)
T 3cx5_B 78 LKDDLPYYVNALADVLYKTAFKPHELTESVLPAARYDYAVAEQCP--VKSAEDQLYAITFR-KGLGNPLL--YDGVERVS 152 (352)
T ss_dssp EGGGHHHHHHHHHHHHHHBCCCHHHHHHTHHHHHHHHHHHHHTCH--HHHHHHHHHHHHHT-TTTTSCSS--CCSSSCCC
T ss_pred chhhHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHhcCH--HHHHHHHHHHHHhC-CCCCCccc--hhhhccCC
Confidence 999999999999999999999999998 99999999999887777 67899999999997 99998764 78999999
Q ss_pred HHHHHHHHHhhcCCCCeEEEEecCCHHHHHHHH-HhhhccCCCccccccccccCCCCCCCCCCCcccCceeEEecCCCCC
Q psy14217 232 NNTLFTYLKNYYTPTRMVVAGIGVEHEALVEAA-NKYFVDKQPVWIQDKSLVLTDKPVIDTSSATYTGGIVKEECNIPTF 310 (529)
Q Consensus 232 ~~~l~~f~~~~~~~~~~~l~ivG~~~~~l~~~i-~~~f~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 310 (529)
.++|++||++||+|+||+++++|++++++.+++ +++|+.+|..... .+. . ....+.++...+..+
T Consensus 153 ~~~l~~f~~~~y~~~n~~l~v~G~~~~~~~~~i~~~~f~~~~~~~~~--------~~~-~-~~~~~~~~~~~~~~~---- 218 (352)
T 3cx5_B 153 LQDIKDFADKVYTKENLEVSGENVVEADLKRFVDESLLSTLPAGKSL--------VSK-S-EPKFFLGEENRVRFI---- 218 (352)
T ss_dssp HHHHHHHHHHHCCGGGEEEEEESSCHHHHHHHHHHSTTTTSCCCCCC--------CCC-S-CCCCCCSCEEEEECS----
T ss_pred HHHHHHHHHHhCCcCcEEEEEeCCCHHHHHHHHHHHhhccCCCCCCC--------CCC-C-CCCCccCCeEEEecC----
Confidence 999999999999999999999999999999999 8999997643111 000 0 111123333333221
Q ss_pred CCCCCCCcceeEEEEeccCCCCCCCchHHHHHHHhhcCCCCCCCCCCCCCcccHHHHHHhhhcCceeEEEEeccccCCcc
Q psy14217 311 AGTSGLPELSHVVIGLEGVSHQDPDFVPACVLNILMGGGGSFSAGGPGKGMYTRLYTNVLNRHHWMFSATAYNHAYADTG 390 (529)
Q Consensus 311 ~g~~~~~~~~~v~i~~~~~~~~~~~~~~~~vl~~lL~~~~~f~~~~~g~g~~srL~~~lR~~~gl~Y~~~a~~~~~~~~g 390 (529)
.++.+.+++ ++++++.+++.|++.+|| + +||++.|++ +++++..+.+.|
T Consensus 219 -------~~~~~~~~~---~~~~~~~~~l~vl~~iLg---------------~----~lre~~gl~--~~~~~~~~~~~g 267 (352)
T 3cx5_B 219 -------GDSVAAIGI---PVNKASLAQYEVLANYLT---------------S----ALSELSGLI--SSAKLDKFTDGG 267 (352)
T ss_dssp -------SSEEEEEEE---EECTTTHHHHHHHHHHHH---------------S----TTSTTGGGC--SEEEEEEETTEE
T ss_pred -------CCceEEEec---CCCChhHHHHHHHHHHhC---------------c----chhcccCce--EEEeecCcCcce
Confidence 345566554 345679999999999998 3 468888887 556665667789
Q ss_pred cEEEEEEeCCCCHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHhcCCCCChhHHHHH
Q psy14217 391 LFCIHASAPPSNVKNIVDVLVKELVTMAGPIDADELSRAKKQLQSMLLMNLEARPAVFEDVGRQVLATGHRKRPSTYIES 470 (529)
Q Consensus 391 ~f~i~~~~~p~~~~~~~~~i~~~l~~l~~~it~~el~~ak~~l~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~ 470 (529)
.|.|+++++ +.+++.+.+.++++. +++++||+++|+.+++++....++. +..... .
T Consensus 268 ~~~i~~~~~--~~~~~~~~i~~~l~~---~~t~~el~~ak~~~~~~~~~~~~~~--------------~~~~~~-----~ 323 (352)
T 3cx5_B 268 LFTLFVRDQ--DSAVVSSNIKKIVAD---LKKGKDLSPAINYTKLKNAVQNESV--------------SSPIEL-----N 323 (352)
T ss_dssp EEEEEEEES--CHHHHHHHHHHHHHH---HHSCEECGGGHHHHHHHHHHHCCST--------------TCCCCS-----C
T ss_pred eEEEEEEeC--CHHHHHHHHHHHHHh---cCCHHHHHHHHHHHHHHHHhhhhcc--------------CCccce-----e
Confidence 999999986 566666666666543 4899999999999999999888773 222222 5
Q ss_pred HccCCHHHHHHHHHHhccCCCeEEEEcCCCCCCCHHH
Q psy14217 471 IENVTEDDIRRVASRLLTSQPSVAARGELINFPSYED 507 (529)
Q Consensus 471 i~~vT~edv~~~a~~~l~~~~~~~v~G~~~~ip~~~~ 507 (529)
|++||.+ + + .+++++++||...+|.+++
T Consensus 324 i~~vt~~-------~-~-~~~~~~~~G~~~~~~~~~~ 351 (352)
T 3cx5_B 324 FDAVKDF-------K-L-GKFNYVAVGDVSNLPYLDE 351 (352)
T ss_dssp GGGCCEE-------C-C-CSCEEEEEESGGGSCCGGG
T ss_pred eeeeeHh-------h-c-CCceEEEEccccccCcccc
Confidence 9999932 2 5 8899999999999998875
No 18
>1q2l_A Protease III; hydrolase; 2.20A {Escherichia coli str} SCOP: d.185.1.1 d.185.1.1 d.185.1.1 d.185.1.1
Probab=100.00 E-value=4.2e-35 Score=332.82 Aligned_cols=419 Identities=9% Similarity=0.036 Sum_probs=317.3
Q ss_pred CCCCCCCCCCCCCCCCCCcccccCCCCCeEEEEcCCCCEEEEeecCC----CeEEEEEEEccCCCCCCCCCCcHHHHHHH
Q psy14217 36 SFQQPPLSTPLPGLPKVHYSCVKDNDRNTQVTTLPNGLRVASENRFG----SFCTIGVIIDSGSRYEQPYPSGVSHFLEK 111 (529)
Q Consensus 36 ~~~~~~l~~~~p~~~~~~~~~~~~~~~~~~~~~L~NGl~v~~~~~~~----~~~~i~l~~~~G~~~e~~~~~Gla~ll~~ 111 (529)
.+..|..++++|........ ......++.++|+||++||+.+++. |++.+.+.+.+|...++++..|+++++.+
T Consensus 474 ~~~~p~~n~~~~~~~~~~~~--~~~~~~p~~~~l~ng~~v~~~~~~~f~~pp~~~i~l~~~~~~~~~~~~~~~~~~l~~~ 551 (939)
T 1q2l_A 474 ALSLPELNPYIPDDFSLIKS--EKKYDHPELIVDESNLRVVYAPSRYFASEPKADVSLILRNPKAMDSARNQVMFALNDY 551 (939)
T ss_dssp CCCCCCCCTTCCCCCCCCCC--SSCCSSCEEEEEETTEEEEEECCSSCTTSSEEEEEEEEECGGGGSSHHHHHHHHHHHH
T ss_pred cccCCCCCcCCCcCcccccC--cCCCCCCEEEEECCCceEeecCCCccCCCCcEEEEEEEeCCcccCCHHHHHHHHHHHH
Confidence 45556666667655322211 1223344788999999999987652 49999999999999888888899999999
Q ss_pred HhhcCCCCCCCHHHHHHHHHHhCCEeeEeeccceEEEEEEecCCCHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHHHH
Q psy14217 112 LAFNSTSEYVNKDAIAQSLEKIGGICDCLSSRDTFIYAASAATSGLDTVMKILGDVVLRPKFSKEEINMARQTIQFELEN 191 (529)
Q Consensus 112 l~~~g~~~~~~~~~l~~~l~~~g~~~~~~t~~~~~~~~~~~~~~~l~~~l~ll~~~l~~p~f~~~~~~~~k~~~~~el~~ 191 (529)
|+..|+..+ .+. .+..|..++++. .+.+.+++++.+++++.+|+++.+.+.+|.|++++|+++|+.+..++++
T Consensus 552 ll~~g~~~~----~~~--~~l~G~~~~~~~-~~g~~~~~~g~~~~l~~~l~ll~~~l~~p~~~~~~f~~~k~~~~~~l~~ 624 (939)
T 1q2l_A 552 LAGLALDQL----SNQ--ASVGGISFSTNA-NNGLMVNANGYTQRLPQLFQALLEGYFSYTATEDQLEQAKSWYNQMMDS 624 (939)
T ss_dssp HHHHHHHHH----HHH--HHHTTEEEEEEE-SSEEEEEEEEESSSHHHHHHHHHHHHHHCCCCSHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHH----hhH--HHHcCcEEEEee-CCcEEEEEEcccHhHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHhh
Confidence 998775443 222 334477788888 8999999999999999999999999999999999999999999999998
Q ss_pred hhc-CCchHHHHHHHHHHHcCCCCCCCCCCCCCchhcCCCCHHHHHHHHHhhcCCCCeEEEEec-CCHHHHHHHHHhhhc
Q psy14217 192 YQM-RPEQETLLMDMIHAAAYKDNTLGLPKLCPPASIGVINNNTLFTYLKNYYTPTRMVVAGIG-VEHEALVEAANKYFV 269 (529)
Q Consensus 192 ~~~-~p~~~~~~~~~l~~~~~~~~~~~~~~~g~~~~l~~i~~~~l~~f~~~~~~~~~~~l~ivG-~~~~~l~~~i~~~f~ 269 (529)
... +| ...+.+.+...+|++. .+..++.++|++++.++|++||+++|.+.+++++|+| +++++++++++++++
T Consensus 625 ~~~~~p--~~~a~~~l~~~l~~~~---~~~~~~~~~l~~it~~~l~~f~~~~~~~~~~~~~vvGn~~~~~~~~l~~~~~~ 699 (939)
T 1q2l_A 625 AEKGKA--FEQAIMPAQMLSQVPY---FSRDERRKILPSITLKEVLAYRDALKSGARPEFMVIGNMTEAQATTLARDVQK 699 (939)
T ss_dssp HSCSCH--HHHHHHHHHHTTSSSC---CCHHHHHHHGGGCCHHHHHHHHHHHHTTCEEEEEEEESCCHHHHHHHHHHHHH
T ss_pred hhhcCh--HHHHHHHHHHHhcCCC---CCHHHHHHHHhcCCHHHHHHHHHHHHhhheEEEEEEcCCCHHHHHHHHHHHHH
Confidence 744 34 5778888888888752 3445778999999999999999999999999999999 999999999999999
Q ss_pred cCCCccccccccccCCCCCCCCCCCcccCceeEEecCCCCCCCCCCCCcceeE-EEEeccCCCCCCCchHHHHHHHhhcC
Q psy14217 270 DKQPVWIQDKSLVLTDKPVIDTSSATYTGGIVKEECNIPTFAGTSGLPELSHV-VIGLEGVSHQDPDFVPACVLNILMGG 348 (529)
Q Consensus 270 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~v-~i~~~~~~~~~~~~~~~~vl~~lL~~ 348 (529)
.++..... ..... ......+....+....+. .++.+ .+.+..+..+.++.+.+.+|..++.
T Consensus 700 ~l~~~~~~--------~~~~~-~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~lL~~~~~- 761 (939)
T 1q2l_A 700 QLGADGSE--------WCRNK-DVVVDKKQSVIFEKAGNS--------TDSALAAVFVPTGYDEYTSSAYSSLLGQIVQ- 761 (939)
T ss_dssp HHTCCCSC--------CCCCE-EECCCSCEEEEEEECCSS--------SCEEEEEEEECSSCCHHHHHHHHHHHHHHHH-
T ss_pred HHccCCcc--------ccccc-eEEeCCCceEEEecCCCC--------CCceeEEEEEecCCCCHHHHHHHHHHHHHHH-
Confidence 86532100 00000 000011222222222211 23444 6666655333334444555555554
Q ss_pred CCCCCCCCCCCCcccHHHHHHhhhcCceeEEEEecccc-CCccc-EEEEE-EeCCCCHHHHHHHHHHHHHHhcCCCCHHH
Q psy14217 349 GGSFSAGGPGKGMYTRLYTNVLNRHHWMFSATAYNHAY-ADTGL-FCIHA-SAPPSNVKNIVDVLVKELVTMAGPIDADE 425 (529)
Q Consensus 349 ~~~f~~~~~g~g~~srL~~~lR~~~gl~Y~~~a~~~~~-~~~g~-f~i~~-~~~p~~~~~~~~~i~~~l~~l~~~it~~e 425 (529)
++||++||+++|++|+|+++.... ...|. |.|+. .++|++++++++.+.+++.++.+++|++|
T Consensus 762 --------------s~lf~~LRek~gl~Y~v~s~~~~~~~~~g~~~~i~s~~~~p~~~~~~i~~~~~~~~~~~~~~t~~e 827 (939)
T 1q2l_A 762 --------------PWFYNQLRTEEQLGYAVFAFPMSVGRQWGMGFLLQSNDKQPSFLWERYKAFFPTAEAKLRAMKPDE 827 (939)
T ss_dssp --------------HHHTHHHHTSCCSSSCEEEEEEEETTEEEEEEEEEESSSCHHHHHHHHHHHHHHHHHHHHTCCHHH
T ss_pred --------------HHHHHHHHHHHHhCceeeeeEeecCCeeEEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHhCCHHH
Confidence 999999999999999999987643 33453 66666 57899999999999999998877899999
Q ss_pred HHHHHHHHHHHHHHhcCChHHHHHHHHHHHHhcCC-CCChhHHHHHHccCCHHHHHHHHHHhccC-C-C--eEEEEcCCC
Q psy14217 426 LSRAKKQLQSMLLMNLEARPAVFEDVGRQVLATGH-RKRPSTYIESIENVTEDDIRRVASRLLTS-Q-P--SVAARGELI 500 (529)
Q Consensus 426 l~~ak~~l~~~~~~~~~~~~~~~~~l~~~~l~~~~-~~~~~~~~~~i~~vT~edv~~~a~~~l~~-~-~--~~~v~G~~~ 500 (529)
|+++|+.+++++....++....+..+|..++..+. ++..+++.+.|++||++||++++++++.+ + . ++.++|+..
T Consensus 828 l~~~k~~l~~~~~~~~~s~~~~~~~~w~~i~~~~~~~d~~~~~~~~i~~vT~~dv~~~a~~~l~~~~~~~l~v~v~G~~~ 907 (939)
T 1q2l_A 828 FAQIQQAVITQMLQAPQTLGEEASKLSKDFDRGNMRFDSRDKIVAQIKLLTPQKLADFFHQAVVEPQGMAILSQISGSQN 907 (939)
T ss_dssp HHHHHHHHHHHHTCCCSSHHHHHHHHHHHHHHTCTTCCHHHHHHHHHHTCCHHHHHHHHHHHTTSCSSEEEEEEECCSSH
T ss_pred HHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCCCCChHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCEEEEEEecCCC
Confidence 99999999999999999998888888888776553 46678899999999999999999999763 3 3 345889863
No 19
>2fge_A Atprep2;, zinc metalloprotease (insulinase family); peptidasome, protease-peptide complex, hydrolase, plant protein; 2.10A {Arabidopsis thaliana} SCOP: d.185.1.1 d.185.1.1 d.185.1.1 d.185.1.1
Probab=100.00 E-value=3.1e-33 Score=319.01 Aligned_cols=391 Identities=11% Similarity=0.009 Sum_probs=303.6
Q ss_pred EEcCCCCEEEEeecC-CCeEEEEEEEccCCCCCCCCCCcHHHHHHHHhhc-CCCCCCCHHHHHHHHHHhCCEeeE-----
Q psy14217 67 TTLPNGLRVASENRF-GSFCTIGVIIDSGSRYEQPYPSGVSHFLEKLAFN-STSEYVNKDAIAQSLEKIGGICDC----- 139 (529)
Q Consensus 67 ~~L~NGl~v~~~~~~-~~~~~i~l~~~~G~~~e~~~~~Gla~ll~~l~~~-g~~~~~~~~~l~~~l~~~g~~~~~----- 139 (529)
..+.||++|++.+.. .+.+++.+++++|+. +++..|+++++.++++. |+.++ +..++.+.++...|.+++
T Consensus 556 ~~~~nG~~v~~~~~~~~~~v~~~~~~~~~~~--~~~~~~~~~l~~~~l~~~Gt~~~-s~~el~~~l~~~~ggl~~~~~~~ 632 (995)
T 2fge_A 556 VGDINGVKVLRHDLFTNDIIYTEVVFDIGSL--KHELLPLVPLFCQSLLEMGTKDL-TFVQLNQLIGRKTGGISVYPLTS 632 (995)
T ss_dssp EEESSSSEEEEEECCCSSEEEEEEEEECTTS--CTTTGGGHHHHHHHHHHSCCSSS-CHHHHHHHHHHHSSEEEEEEEEE
T ss_pred eeecCCceEEEEecCCCCeEEEEEEeeCCCC--CHHHhhhHHHHHHHHHhCCCCCC-CHHHHHHHHHHhcCceEeecccc
Confidence 445899999987765 489999999999887 56788999999988885 89887 688999999966555555
Q ss_pred eecc-----ceEEEEEEecCCCHHHHHHHHHHhhcCCCCCHH-HHHHHHHHHHHHHHHhhcCCchHHHHHHHHHHHcCCC
Q psy14217 140 LSSR-----DTFIYAASAATSGLDTVMKILGDVVLRPKFSKE-EINMARQTIQFELENYQMRPEQETLLMDMIHAAAYKD 213 (529)
Q Consensus 140 ~t~~-----~~~~~~~~~~~~~l~~~l~ll~~~l~~p~f~~~-~~~~~k~~~~~el~~~~~~p~~~~~~~~~l~~~~~~~ 213 (529)
+++. +.+.|++++.+++++.+|+++.+++.+|.|+++ +|+++++.+..++++...++. ...+...+...+++.
T Consensus 633 ~~~~~~~~~~~~~i~~~~l~~~l~~~l~ll~e~l~~p~f~~~~~~~~~~~~~~~~l~~~~~~~~-~~~A~~~~~~~~~~~ 711 (995)
T 2fge_A 633 SVRGKDEPCSKIIVRGKSMAGRADDLFNLMNCLLQEVQFTDQQRFKQFVSQSRARMENRLRGSG-HGIAAARMDAMLNIA 711 (995)
T ss_dssp EETTEEEEEEEEEEEEEEEGGGHHHHHHHHHHHHHHCCSCCHHHHHHHHHHHHHHHHHHHHHCH-HHHHHHHHHHTTCHH
T ss_pred ccCccccccceEEEEEEEehhhHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHHHHHhhhccH-HHHHHHHHHHhCChh
Confidence 5554 889999999999999999999999999999999 999999999999997764432 455666666654444
Q ss_pred CCCCCCC-----CCCc--------hhcCCCCHHHHHHHHHhhcCCCCeEEEEec-CCH-HHHHHHHHhhhccC-CCcccc
Q psy14217 214 NTLGLPK-----LCPP--------ASIGVINNNTLFTYLKNYYTPTRMVVAGIG-VEH-EALVEAANKYFVDK-QPVWIQ 277 (529)
Q Consensus 214 ~~~~~~~-----~g~~--------~~l~~i~~~~l~~f~~~~~~~~~~~l~ivG-~~~-~~l~~~i~~~f~~l-~~~~~~ 277 (529)
++++... .+.. +.++.+ .++|++||+++|.+++|+++++| +++ +++.++++++|+.+ |.....
T Consensus 712 ~~~~~~~~gl~~~~~~~~l~~~~~e~~~~i-~~~L~~~~~~~~~~~~~~~~v~Gd~~~~~~~~~~~~~~~~~l~p~~~~~ 790 (995)
T 2fge_A 712 GWMSEQMGGLSYLEFLHTLEKKVDEDWEGI-SSSLEEIRRSLLARNGCIVNMTADGKSLTNVEKSVAKFLDLLPENPSGG 790 (995)
T ss_dssp HHHHHHHHSHHHHHHHHHHHHHHHHCHHHH-HHHHHHHHHHHCCSTTCEEEEEECHHHHHHHHHHHHHHHHTSCSSCSSC
T ss_pred HHHHHHHccHHHHHHHHHHHHhhhcCHHHH-HHHHHHHHHHHcCcCCcEEEEEeCHHHHHHHHHHHHHHHHhhCccCCCC
Confidence 5443211 1111 557888 99999999999999999999999 995 99999999999987 642110
Q ss_pred ccccccCCCCCCCCCCCcccCceeEEecCCCCCCCCCCCCcceeEEEEeccCCCCCCCchHHHHHHHhhcCCCCCCCCCC
Q psy14217 278 DKSLVLTDKPVIDTSSATYTGGIVKEECNIPTFAGTSGLPELSHVVIGLEGVSHQDPDFVPACVLNILMGGGGSFSAGGP 357 (529)
Q Consensus 278 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~v~i~~~~~~~~~~~~~~~~vl~~lL~~~~~f~~~~~ 357 (529)
..... .+. .........+. ...++..++....+++++..++.|++.+|++
T Consensus 791 --------~~~~~--~~~-~~~~~~~~~~~----------~v~~~~~~~~~~~~~~~d~~al~vl~~iLg~--------- 840 (995)
T 2fge_A 791 --------LVTWD--GRL-PLRNEAIVIPT----------QVNYVGKAGNIYSTGYELDGSAYVISKHISN--------- 840 (995)
T ss_dssp --------SCCCC--CCC-CCCCEEEECSC----------SSBEEEEEEEGGGGTCCCCTHHHHHHHHHHH---------
T ss_pred --------CCccc--ccC-CccceEEEecC----------ceEEEEEecCCCCCCCcccHHHHHHHHHHCC---------
Confidence 00010 000 00111111111 2345555776677889999999999999995
Q ss_pred CCCcccHHHHHHhhhcCceeEEEEeccccCCcccEE-EEEEeCCCCHHHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHH
Q psy14217 358 GKGMYTRLYTNVLNRHHWMFSATAYNHAYADTGLFC-IHASAPPSNVKNIVDVLVKELVTMAG-PIDADELSRAKKQLQS 435 (529)
Q Consensus 358 g~g~~srL~~~lR~~~gl~Y~~~a~~~~~~~~g~f~-i~~~~~p~~~~~~~~~i~~~l~~l~~-~it~~el~~ak~~l~~ 435 (529)
++||++||+ +|++|++++++.. .|.|. ++...+| +++++++.+.+.++.+++ ++|++||+++|..+++
T Consensus 841 -----~~L~~~iRe-~g~aYg~~s~~~~---~G~~~~~~s~~dp-~~~~~~~~~~~~~~~l~~~~~te~el~~ak~~li~ 910 (995)
T 2fge_A 841 -----TWLWDRVRV-SGGAYGGFCDFDS---HSGVFSYLSYRDP-NLLKTLDIYDGTGDFLRGLDVDQETLTKAIIGTIG 910 (995)
T ss_dssp -----THHHHHTTT-TTCCSEEEEEEET---TTTEEEEEEESBS-CSHHHHHHHHTHHHHHHTCCCCHHHHHHHHHHHHH
T ss_pred -----CccHHHhhh-cCCCcccceEeCC---CccEEEEEEEcCC-CHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHH
Confidence 689999999 8999999998765 58998 8888888 688888888888887776 6999999999999999
Q ss_pred HHHHhcCChHHHHHHHHHHHHhcCCCCChhHHHHHHccCCHHHHHHHHHHhccC--CCeEEEEcCCCCCC
Q psy14217 436 MLLMNLEARPAVFEDVGRQVLATGHRKRPSTYIESIENVTEDDIRRVASRLLTS--QPSVAARGELINFP 503 (529)
Q Consensus 436 ~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~i~~vT~edv~~~a~~~l~~--~~~~~v~G~~~~ip 503 (529)
++. ...++.......+...+.+...+..+++++.|.+||++||+++|++|+.+ +.+++|+|+...++
T Consensus 911 ~~~-~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~i~~vT~edv~~~a~~~~~~~~~~~~~vvG~~~~i~ 979 (995)
T 2fge_A 911 DVD-SYQLPDAKGYSSLLRHLLGVTDEERQRKREEILTTSLKDFKDFAQAIDVVRDKGVAVAVASAEDID 979 (995)
T ss_dssp HHT-CCCCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHCEEEEEECHHHHH
T ss_pred hcc-CCCCHHHHHHHHHHHHHcCcCHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhccCCEEEECCHHHHH
Confidence 984 46677766666666555443346678889999999999999999999986 79999999865433
No 20
>3cww_A Insulysin, insulin-degrading enzyme, insulinase; A-beta degrading enzyme, criptidase, kinins, hydrolase; 1.96A {Homo sapiens} PDB: 3ofi_A 2wc0_A 3h44_A 3n56_A 3n57_A 2wby_A 3qz2_A 3e4z_A 2wk3_A 3e4a_A* 2g47_A 2g48_A 2g49_A 2g54_A 2g56_A 2jbu_A 3e50_A 2jg4_A 3hgz_A 2yb3_A* ...
Probab=100.00 E-value=1e-31 Score=306.65 Aligned_cols=428 Identities=9% Similarity=0.053 Sum_probs=323.0
Q ss_pred CCCCCCCCCCCCCCCCCcccccCCCCCeEEEEcCCCCEEEEeecC---CCeEEEEEEEccCCCCCCCCCCcHHHHHHHHh
Q psy14217 37 FQQPPLSTPLPGLPKVHYSCVKDNDRNTQVTTLPNGLRVASENRF---GSFCTIGVIIDSGSRYEQPYPSGVSHFLEKLA 113 (529)
Q Consensus 37 ~~~~~l~~~~p~~~~~~~~~~~~~~~~~~~~~L~NGl~v~~~~~~---~~~~~i~l~~~~G~~~e~~~~~Gla~ll~~l~ 113 (529)
+..|..+.++|.......... .....+..++++||++||+.+.. .|...+.+.+..|...++++..++++++..|+
T Consensus 493 ~~~p~~~~~ip~~~~~~~~~~-~~~~~p~~~~~~ng~~v~~~~~~~f~~P~~~i~~~~~~~~~~~~~~~~~~~~L~~~ll 571 (990)
T 3cww_A 493 FKLPTKNEFIPTNFEILPLEA-AATPYPALIKDTAMSKLWFKQDDKFFLPKANLNFEFFSPFAYVDPLHSNMAYLYLELL 571 (990)
T ss_dssp CCCCCCCTTCCCCCCCCCCCT-TCCSSCEEEEECSSEEEEEEECSSCCCSEEEEEEEEECGGGTSSHHHHHHHHHHHHHH
T ss_pred ccCCCCCCCCCcccccccCCC-CCCCCCeeeecCCCceEeeccCCccCCCcEEEEEEEeCCCCCCCHHHHHHHHHHHHHH
Confidence 555666777776432211110 11223477899999999987664 46888888888887777888889999999998
Q ss_pred hcCCCCCCCHHHHHHHHHHhCCEeeEeeccceEEEEEEecCCCHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHhh
Q psy14217 114 FNSTSEYVNKDAIAQSLEKIGGICDCLSSRDTFIYAASAATSGLDTVMKILGDVVLRPKFSKEEINMARQTIQFELENYQ 193 (529)
Q Consensus 114 ~~g~~~~~~~~~l~~~l~~~g~~~~~~t~~~~~~~~~~~~~~~l~~~l~ll~~~l~~p~f~~~~~~~~k~~~~~el~~~~ 193 (529)
..+ + +..++...+ .|.+++++++.+.+.+++++.+++++.+|+++.+.+.+|.|+++.|++.|+.+..++++..
T Consensus 572 ~~~---~-~~~~~~~~l--~G~~~~~~~~~~~~~~~~~g~~~~l~~~l~ll~~~l~~p~~~~~~f~~~k~~~~~~~~~~~ 645 (990)
T 3cww_A 572 KDS---L-NEYAYAAEL--AGLSYDLQNTIYGMYLSVKGYNDKQPILLKKIIEKMATFEIDEARFEIIKEAYMRSLNNFR 645 (990)
T ss_dssp HHH---H-HHHHHHHHH--TTEEEEEEEETTEEEEEEEEESTTHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHGG
T ss_pred HHH---H-HHhhhHHHh--CCeEEEEEEcCCeEEEEEEeccHhHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhhh
Confidence 764 2 344555555 4888999999999999999999999999999999999999999999999999999999876
Q ss_pred c-CCchHHHHHHHHHHHcCCCCCCCCCCCCCchhcCCCCHHHHHHHHHhhcCCCCeEEEEec-CCHHHHHHH---HHhhh
Q psy14217 194 M-RPEQETLLMDMIHAAAYKDNTLGLPKLCPPASIGVINNNTLFTYLKNYYTPTRMVVAGIG-VEHEALVEA---ANKYF 268 (529)
Q Consensus 194 ~-~p~~~~~~~~~l~~~~~~~~~~~~~~~g~~~~l~~i~~~~l~~f~~~~~~~~~~~l~ivG-~~~~~l~~~---i~~~f 268 (529)
. +| ...+.+.+...+++ +++.. .++.+.|++++.++|++|++++|.+.+++++++| ++.+++.++ +.++|
T Consensus 646 ~~~p--~~~a~~~~~~~l~~-~~~~~--~~~~~~l~~lt~~~l~~~~~~~~~~~~~~~~v~Gn~~~~~~~~~~~~~~~~l 720 (990)
T 3cww_A 646 AEQP--HQHAMYYLRLLMTE-VAWTK--DELKEALADVTLPRLKAFIPQLLSRLHIEALLHGNITKQAALGIMQMVEDTL 720 (990)
T ss_dssp GSCH--HHHHHHHHHHHHBS-SCCCH--HHHHHHHTTCCHHHHHHHHHHHHHEEEEEEEEEESCCHHHHHHHHHHHHHHH
T ss_pred hcCh--HHHHHHHHHHHhCC-CCCCH--HHHHHHHhcCCHHHHHHHHHHHHhhheEEEEEEcCCCHHHHHHHHHHHHHHH
Confidence 6 55 67888888888885 44442 3468899999999999999999999999999999 999998887 66788
Q ss_pred ccCCCccccccccccCCCCCCCCCCCcccCceeEEecCCCCCCCCCCCCcceeEEEEeccCCCCCCCchHHHHHHHhhcC
Q psy14217 269 VDKQPVWIQDKSLVLTDKPVIDTSSATYTGGIVKEECNIPTFAGTSGLPELSHVVIGLEGVSHQDPDFVPACVLNILMGG 348 (529)
Q Consensus 269 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~v~i~~~~~~~~~~~~~~~~vl~~lL~~ 348 (529)
+.+|.. .... ++... .........+....+....+ ...++.+.+++..+.++.++.+++.|++.+|+
T Consensus 721 ~~l~~~-~~~~---~~~~~-~~~~~~~~~~~~~~~~~~~~-------~~~~~~v~~~~~~~~~~~~~~~~l~ll~~il~- 787 (990)
T 3cww_A 721 IEHAHT-KPLL---PSQLA-AYREVQLPDRGWFVYQQRNE-------VHNNSGIEIYYQTDMQSTSENMFLELFAQIIS- 787 (990)
T ss_dssp HHHHCC-EECC---GGGCC-CCCBBCCCTTEEEEEEEECS-------SCSSEEEEEEEEEEECCHHHHHHHHHHHHHHH-
T ss_pred hccCCC-CCCc---hhhcc-ccceEEcCCCCeEEEEecCC-------CCCCcEEEEEEeCCCCCHHHHHHHHHHHHHHH-
Confidence 765422 0000 00000 00000001122222211111 01456676767766677788999999999998
Q ss_pred CCCCCCCCCCCCcccHHHHHHhhhcCceeEEEEeccccCCcccEEE--EEEeCCCCHHHHHHHHHHHHHHhcCCCCHHHH
Q psy14217 349 GGSFSAGGPGKGMYTRLYTNVLNRHHWMFSATAYNHAYADTGLFCI--HASAPPSNVKNIVDVLVKELVTMAGPIDADEL 426 (529)
Q Consensus 349 ~~~f~~~~~g~g~~srL~~~lR~~~gl~Y~~~a~~~~~~~~g~f~i--~~~~~p~~~~~~~~~i~~~l~~l~~~it~~el 426 (529)
++||++||++.|++|++++++....+...|.+ +..++|+++.++++.+.+++..+.+++|++||
T Consensus 788 --------------~~lf~~LRek~~lgY~v~s~~~~~~g~~~~~~~vqs~~dp~~~~~~i~~f~~~~~~l~~~~te~el 853 (990)
T 3cww_A 788 --------------EPAFNTLRTKEQLGYIVFSGPRRANGIQGLRFIIQSEKPPHYLESRVEAFLITMEKSIEDMTEEAF 853 (990)
T ss_dssp --------------HHHHHHHTTTTCCCSEEEEEEEEETTEEEEEEEEEESSCHHHHHHHHHHHHHHHHHHHHHSCHHHH
T ss_pred --------------HHHHHHHHhccCCcEEEEEEEEeeCCEEEEEEEEeCCCCHHHHHHHHHHHHHHHHHHHHhcCHHHH
Confidence 99999999999999999998765433333333 44468889999999999999988668999999
Q ss_pred HHHHHHHHHHHHHhcCChHHHHHHHHHHHHhcCC-CCChhHHHHHHccCCHHHHHHHHHHhccC------CCeEEEEcCC
Q psy14217 427 SRAKKQLQSMLLMNLEARPAVFEDVGRQVLATGH-RKRPSTYIESIENVTEDDIRRVASRLLTS------QPSVAARGEL 499 (529)
Q Consensus 427 ~~ak~~l~~~~~~~~~~~~~~~~~l~~~~l~~~~-~~~~~~~~~~i~~vT~edv~~~a~~~l~~------~~~~~v~G~~ 499 (529)
+++|..+++++....+++......+|..++..+. ++..+++.+.|++||++||++++++++.+ +.+++|+|+.
T Consensus 854 ~~~k~~li~~~~~~~~~~~~~~~~~~~~i~~~~~~~d~~~~~~~~i~~vT~~di~~~a~~~l~~~~~~~~~~~v~v~g~~ 933 (990)
T 3cww_A 854 QKHIQALAIRRLDKPKKLSAESAKYWGEIISQQYNFDRDNTEVAYLKTLTKADIIKFYKEMLAVDAPRRHKVSVHVLARE 933 (990)
T ss_dssp HHHHHHHHHHHHCCCSSHHHHHHHHHHHHHTTCCCTTHHHHHHHHHTTCCHHHHHHHHHHHTSTTCTTCEEEEEEEECTT
T ss_pred HHHHHHHHHHhcCCCCCHHHHHHHHHHHHHcCCCCCChHHHHHHHHHhCCHHHHHHHHHHHhhccCCCCCEEEEEEECCC
Confidence 9999999999999899998888888888776553 46678899999999999999999999874 3678999987
Q ss_pred CCCC
Q psy14217 500 INFP 503 (529)
Q Consensus 500 ~~ip 503 (529)
..+.
T Consensus 934 ~~~~ 937 (990)
T 3cww_A 934 MDSN 937 (990)
T ss_dssp C---
T ss_pred Cccc
Confidence 6543
No 21
>3s5m_A Falcilysin; M16 metalloprotease, peptidase, hydrolase; 1.55A {Plasmodium falciparum} PDB: 3s5i_A 3s5k_A 3s5h_A
Probab=99.96 E-value=7e-29 Score=280.88 Aligned_cols=404 Identities=9% Similarity=0.032 Sum_probs=288.8
Q ss_pred cCCCCEEEEeecC-CCeEEEEEEEccCCCCCCCCCCcHHHHHHHHhhc-CCCCCCCHHHHHHHHHHhCCEeeEeec----
Q psy14217 69 LPNGLRVASENRF-GSFCTIGVIIDSGSRYEQPYPSGVSHFLEKLAFN-STSEYVNKDAIAQSLEKIGGICDCLSS---- 142 (529)
Q Consensus 69 L~NGl~v~~~~~~-~~~~~i~l~~~~G~~~e~~~~~Gla~ll~~l~~~-g~~~~~~~~~l~~~l~~~g~~~~~~t~---- 142 (529)
..||++|++.+.+ .+.+++.++++.|.. +.+..++..|+..++.. ||.++ +..++.+.++.++|.++++++
T Consensus 723 ~~~gv~v~~~~~~TNGIvY~~l~fdl~~l--~~e~l~yl~Lf~~~L~~lGT~~~-sy~el~~~i~~~tGGis~s~~~~~~ 799 (1193)
T 3s5m_A 723 YEGNVPILVYEMPTTGIVYLQFVFSLDHL--TVDELAYLNLFKTLILENKTNKR-SSEDFVILREKNIGSMSANVALYSK 799 (1193)
T ss_dssp TTTCEEEEEEECCCTTEEEEEEEEECTTC--CHHHHTTHHHHHHHTTTCCBSSS-CHHHHHHHHHHHCSEEEEEEEEECC
T ss_pred ccCCeEEEEEECCCCCeEEEEEEEECCCC--CHHHHhhHHHHHHHHHhCCCCCC-CHHHHHHHHHHhCCceEEEeeeecc
Confidence 3589999876654 589999999999964 45677888888888755 99986 788999999999988877753
Q ss_pred ------------cceEEEEEEecCCCHHHHHHHHHHhhcCCCCCHHH-HHHHHHHHHHHHHHhhcCCchHHHHHHHHHHH
Q psy14217 143 ------------RDTFIYAASAATSGLDTVMKILGDVVLRPKFSKEE-INMARQTIQFELENYQMRPEQETLLMDMIHAA 209 (529)
Q Consensus 143 ------------~~~~~~~~~~~~~~l~~~l~ll~~~l~~p~f~~~~-~~~~k~~~~~el~~~~~~p~~~~~~~~~l~~~ 209 (529)
.....+++.++.++++.+++++.+++.+|+|++.+ +++.+......+++...++. -..++..+...
T Consensus 800 ~~~~~~~~~~~~~~~~~vs~kaL~~n~~~~~~Ll~eiL~~~~F~d~eRlk~ll~~~ks~le~~i~~sG-H~~A~~ra~s~ 878 (1193)
T 3s5m_A 800 DDHLNVTDKYNAQALFNLEMHVLSHKCNDALNIALEAVKESDFSNKKKVIDILKRKINGMKTTFSEKG-YAILMKYVKAH 878 (1193)
T ss_dssp CBTTBCCCTTCCEEEEEEEEEEEGGGHHHHHHHHHHHHHSBCTTCHHHHHHHHHHHHHHHHHHHHHCH-HHHHHHHTTTT
T ss_pred cccccccccccccceEEEEEEEhhhcHHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHHHHHhcccccc-HHHHHHHHHHh
Confidence 33468899999999999999999999999999864 66555555555554333222 22444443333
Q ss_pred cCCCCCCCCCCCCCchhcCCCC-------------HHHHHHHHHhhcCCCCeEEEEec-CC-HHHHHHHHHhhhccCCCc
Q psy14217 210 AYKDNTLGLPKLCPPASIGVIN-------------NNTLFTYLKNYYTPTRMVVAGIG-VE-HEALVEAANKYFVDKQPV 274 (529)
Q Consensus 210 ~~~~~~~~~~~~g~~~~l~~i~-------------~~~l~~f~~~~~~~~~~~l~ivG-~~-~~~l~~~i~~~f~~l~~~ 274 (529)
+.+.+++.....| .+.+..+. .++|+++|+++|+++|+++.++| .+ .+++.+.++++++.++..
T Consensus 879 ~s~~~~~~e~~~G-l~~~~fl~~l~~~~e~~~~~l~~~L~~i~~~if~~~nl~vsvtg~~~~~~~~~~~l~~~l~~l~~~ 957 (1193)
T 3s5m_A 879 LNSKHYAHNIIYG-YENYLKLQEQLELAENDFKTLENILVRIRNKIFNKKNLMVSVTSDYGALKHLFVNSNESLKNLVSY 957 (1193)
T ss_dssp TCHHHHHHHHHHS-HHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHSCSTTEEEEEEECGGGTHHHHTTTHHHHHHHHHH
T ss_pred cCcchhhhhhhCC-hHHHHHHHHHHHhhHhhHHHHHHHHHHHHHHHcCCCCeEEEEEeChhhHHHHHHHHHHHHHhhhhc
Confidence 3333333222222 22222222 67999999999999999999999 75 588887777777665432
Q ss_pred cccccccc---cCC--CCC-CC-------C-CCCcccCceeEEecCCCCCCCCCCCCcceeEEEEeccCCCCCCCchHHH
Q psy14217 275 WIQDKSLV---LTD--KPV-ID-------T-SSATYTGGIVKEECNIPTFAGTSGLPELSHVVIGLEGVSHQDPDFVPAC 340 (529)
Q Consensus 275 ~~~~~~~~---~~~--~~~-~~-------~-~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~v~i~~~~~~~~~~~~~~~~ 340 (529)
+....... ... .+. .. . ...........+..+. ++.++..++......++++.++.
T Consensus 958 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~p~----------~v~yv~~~~~~~~~~~~d~~al~ 1027 (1193)
T 3s5m_A 958 FEENDKYINDMQNKVNDPTVMGWNEEIKSKKLFDEEKVKKEFFVLPT----------FVNSVSMSGILFKPGEYLDPSFT 1027 (1193)
T ss_dssp HHHGGGGSCCCCSSSCCCCCCCHHHHHHHTTCCCTTCCEEEEEECCC----------SSBEEEEEEECSCTTCBCCTHHH
T ss_pred cccccccccccccccccccccccccccccccccccccccceeEecCC----------cceEEEEEecCCCCCCCchHHHH
Confidence 21111000 000 000 00 0 0000001111122221 45788889888888889999999
Q ss_pred HHHHhhcCCCCCCCCCCCCCcccHHHHHHhhhcCceeEEEEeccccCCcccEEEEEEeCCCCHHHHHHHHHHHHHHhcC-
Q psy14217 341 VLNILMGGGGSFSAGGPGKGMYTRLYTNVLNRHHWMFSATAYNHAYADTGLFCIHASAPPSNVKNIVDVLVKELVTMAG- 419 (529)
Q Consensus 341 vl~~lL~~~~~f~~~~~g~g~~srL~~~lR~~~gl~Y~~~a~~~~~~~~g~f~i~~~~~p~~~~~~~~~i~~~l~~l~~- 419 (529)
|++.+||+ ++||++||++.| +|++++++. ..|.|.++...+| +..+.++.+.++++.+++
T Consensus 1028 Vl~~iLg~--------------~~L~~eIREkgG-AYg~~s~~~---~~G~f~~~syrdp-~~~~tl~~~~~~~~~l~~~ 1088 (1193)
T 3s5m_A 1028 VIVAALKN--------------SYLWDTVRGLNG-AYGVFADIE---YDGSVVFLSARDP-NLEKTLATFRESAKGLRKM 1088 (1193)
T ss_dssp HHHHHHHH--------------THHHHHHTTTTC-CSEEEEEEC---TTSEEEEEEESBS-CSHHHHHHHHTHHHHHHHH
T ss_pred HHHHHHCc--------------cHHHHHHHhcCC-eeEEEEecc---CCCcEEEEEEeCC-CHHHHHHHHHHHHHHHHhh
Confidence 99999994 799999999855 999999976 5789998888887 478888888888877765
Q ss_pred --CCCHHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHhcCCCCChhHHHHHHccCCHHHHHHHHHHhccC----CCeE
Q psy14217 420 --PIDADELSRAKKQLQSMLLMNLEARPAVFEDVGRQVLATGHRKRPSTYIESIENVTEDDIRRVASRLLTS----QPSV 493 (529)
Q Consensus 420 --~it~~el~~ak~~l~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~i~~vT~edv~~~a~~~l~~----~~~~ 493 (529)
++|++||+++|..+++++. ...++...+..+....+.+...+..+++++.|.+||++||+++|++|+.+ +..+
T Consensus 1089 ~~~~teeEL~~ak~~~~~~~d-~p~~p~~~a~~~~~~~~~Gl~~d~~~~~~~~I~aVT~edv~~vA~~~~~~l~~~~~~~ 1167 (1193)
T 3s5m_A 1089 ADTMTENDLLRYIINTIGTID-KPRRGIELSKLSFLRLISNESEQDRVEFRKRIMNTKKEDFYKFADLLESKVNEFEKNI 1167 (1193)
T ss_dssp HHHCCHHHHHHHHHHHHHHHS-CCCCTHHHHHHHHHHHHTTCCHHHHHHHHHHHHTCCHHHHHHHHHHHHHTHHHHTTEE
T ss_pred cCCCCHHHHHHHHHHHHhccc-ccCChHHHHHHHHHHHHcCcCHHHHHHHHHHHHcCCHHHHHHHHHHHhhhhcccCceE
Confidence 7999999999999999975 55666667776666655444346778999999999999999999999986 6899
Q ss_pred EEEcCCCCCCCHHHHHHHhh
Q psy14217 494 AARGELINFPSYEDIHSGIQ 513 (529)
Q Consensus 494 ~v~G~~~~ip~~~~~~~~~~ 513 (529)
+|+|+. +.+.+.++
T Consensus 1168 vvvG~~------~~i~~~l~ 1181 (1193)
T 3s5m_A 1168 VIITTK------EKANEYIA 1181 (1193)
T ss_dssp EEEECH------HHHHHHHH
T ss_pred EEEcCH------HHhhhHHh
Confidence 999984 55666665
No 22
>3ih6_A Putative zinc protease; bordetella pertussis tohama I, struc genomics, PSI-2, protein structure initiative, midwest CENT structural genomics; 2.15A {Bordetella pertussis} PDB: 3ivl_A
Probab=99.92 E-value=1.5e-23 Score=192.95 Aligned_cols=169 Identities=17% Similarity=0.205 Sum_probs=154.1
Q ss_pred cceeEEEEeccCCCCCCCchHHHHHHHhhcCCCCCCCCCCCCCcccHHHHHHhhhcCceeEEEEeccccCCcccEEEEEE
Q psy14217 318 ELSHVVIGLEGVSHQDPDFVPACVLNILMGGGGSFSAGGPGKGMYTRLYTNVLNRHHWMFSATAYNHAYADTGLFCIHAS 397 (529)
Q Consensus 318 ~~~~v~i~~~~~~~~~~~~~~~~vl~~lL~~~~~f~~~~~g~g~~srL~~~lR~~~gl~Y~~~a~~~~~~~~g~f~i~~~ 397 (529)
+++++.++|+++++++++.+++.|++.+|+|+.+ ||||++||++ |++|++++++..+.+.|.|.|++.
T Consensus 23 ~~~~v~~~~~~~~~~~~d~~al~vl~~iLggg~s-----------SrL~~~lre~-gl~y~~~~~~~~~~~~g~~~i~~~ 90 (197)
T 3ih6_A 23 GTPLVAAMYHLPAAGSPDFVGLDLAATILADTPS-----------SRLYHALVPT-KLASGVFGFTMDQLDPGLAMFGAQ 90 (197)
T ss_dssp CSCEEEEEEECCCTTSTTHHHHHHHHHHHHSSTT-----------SHHHHHHTTT-TSCSEEEEEEETTSSSCEEEEEEE
T ss_pred CCceEEEEEecCCCCCCcHHHHHHHHHHHcCCCC-----------chHHHHHHhc-CceEEEEeccccccCCeEEEEEEE
Confidence 5689999999999999999999999999997543 9999999996 999999999888889999999999
Q ss_pred eCCC-CHHHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHhcCCCCChhHHHHHHccCC
Q psy14217 398 APPS-NVKNIVDVLVKELVTMAG-PIDADELSRAKKQLQSMLLMNLEARPAVFEDVGRQVLATGHRKRPSTYIESIENVT 475 (529)
Q Consensus 398 ~~p~-~~~~~~~~i~~~l~~l~~-~it~~el~~ak~~l~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~i~~vT 475 (529)
++|+ +.+++++.+.++|+++++ +++++||+++|+.++.++....+++..++..++.+.+. +......++.+.|++||
T Consensus 91 ~~~~~~~~~~~~~i~~~l~~l~~~~it~~el~~ak~~~~~~~~~~~~~~~~~a~~l~~~~~~-g~~~~~~~~~~~i~~vT 169 (197)
T 3ih6_A 91 LQPGMDQDKALQTLTATLESLSSKPFSQEELERARSKWLTAWQQTYADPEKVGVALSEAIAS-GDWRLFFLQRDRVREAK 169 (197)
T ss_dssp CCTTSCHHHHHHHHHHHHHCTTTSCCCHHHHHHHHHHHHHHHHHHHTSHHHHHHHHHHHHHT-TCTTHHHHHHHHHHTCC
T ss_pred ECCCCCHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHc-CCHHHHHHHHHHHHhCC
Confidence 9999 599999999999999987 89999999999999999999999999999999888775 66677889999999999
Q ss_pred HHHHHHHHHHhccC-CCeEEEEcCC
Q psy14217 476 EDDIRRVASRLLTS-QPSVAARGEL 499 (529)
Q Consensus 476 ~edv~~~a~~~l~~-~~~~~v~G~~ 499 (529)
++||++++++||.+ +.+++++||.
T Consensus 170 ~~dv~~~a~~~l~~~~~~~~~~~P~ 194 (197)
T 3ih6_A 170 LDDVQRAAVAYLVRSNRTEGRYIPT 194 (197)
T ss_dssp HHHHHHHHHHHSSGGGCEEEEECC-
T ss_pred HHHHHHHHHHhCCccCeEEEEEeCC
Confidence 99999999999986 5677888874
No 23
>3ih6_A Putative zinc protease; bordetella pertussis tohama I, struc genomics, PSI-2, protein structure initiative, midwest CENT structural genomics; 2.15A {Bordetella pertussis} PDB: 3ivl_A
Probab=98.16 E-value=4.1e-05 Score=69.11 Aligned_cols=161 Identities=11% Similarity=0.036 Sum_probs=106.6
Q ss_pred CCeEEEEEEEccCCCCCCCCCCcHHHHHHHHhhcCCCCCCCHHHHHHHHHHhCCEeeEeec------cceEEEEEEecCC
Q psy14217 82 GSFCTIGVIIDSGSRYEQPYPSGVSHFLEKLAFNSTSEYVNKDAIAQSLEKIGGICDCLSS------RDTFIYAASAATS 155 (529)
Q Consensus 82 ~~~~~i~l~~~~G~~~e~~~~~Gla~ll~~l~~~g~~~~~~~~~l~~~l~~~g~~~~~~t~------~~~~~~~~~~~~~ 155 (529)
.+...+.+.+.+....++ ..-...++..++..|.. + .+.+.|...|..++++.. .....+++.+.++
T Consensus 22 ~~~~~v~~~~~~~~~~~~--d~~al~vl~~iLggg~s---S--rL~~~lre~gl~y~~~~~~~~~~~~g~~~i~~~~~~~ 94 (197)
T 3ih6_A 22 GGTPLVAAMYHLPAAGSP--DFVGLDLAATILADTPS---S--RLYHALVPTKLASGVFGFTMDQLDPGLAMFGAQLQPG 94 (197)
T ss_dssp CCSCEEEEEEECCCTTST--THHHHHHHHHHHHSSTT---S--HHHHHHTTTTSCSEEEEEEETTSSSCEEEEEEECCTT
T ss_pred CCCceEEEEEecCCCCCC--cHHHHHHHHHHHcCCCC---c--hHHHHHHhcCceEEEEeccccccCCeEEEEEEEECCC
Confidence 455666666666655442 33445566666654422 3 456555445654444322 2235556666666
Q ss_pred -CHHHHHHHHHHhhc---CCCCCHHHHHHHHHHHHHHHHHhhcCCchHHHHHHHHHHHcCCCCCCCCCCCCCchhcCCCC
Q psy14217 156 -GLDTVMKILGDVVL---RPKFSKEEINMARQTIQFELENYQMRPEQETLLMDMIHAAAYKDNTLGLPKLCPPASIGVIN 231 (529)
Q Consensus 156 -~l~~~l~ll~~~l~---~p~f~~~~~~~~k~~~~~el~~~~~~p~~~~~~~~~l~~~~~~~~~~~~~~~g~~~~l~~i~ 231 (529)
+++.+++.+.+.+. .-.+++++++++|..+...+....+++ ...+.......++ +.+.. .....+.|+++|
T Consensus 95 ~~~~~~~~~i~~~l~~l~~~~it~~el~~ak~~~~~~~~~~~~~~--~~~a~~l~~~~~~-g~~~~--~~~~~~~i~~vT 169 (197)
T 3ih6_A 95 MDQDKALQTLTATLESLSSKPFSQEELERARSKWLTAWQQTYADP--EKVGVALSEAIAS-GDWRL--FFLQRDRVREAK 169 (197)
T ss_dssp SCHHHHHHHHHHHHHCTTTSCCCHHHHHHHHHHHHHHHHHHHTSH--HHHHHHHHHHHHT-TCTTH--HHHHHHHHHTCC
T ss_pred CCHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhhcCH--HHHHHHHHHHHHc-CCHHH--HHHHHHHHHhCC
Confidence 68888888877664 346999999999999998887666654 4566666666565 32211 112267899999
Q ss_pred HHHHHHHHHhhcCCCCeEEEEec
Q psy14217 232 NNTLFTYLKNYYTPTRMVVAGIG 254 (529)
Q Consensus 232 ~~~l~~f~~~~~~~~~~~l~ivG 254 (529)
.++++++.++|+.+++++++++|
T Consensus 170 ~~dv~~~a~~~l~~~~~~~~~~~ 192 (197)
T 3ih6_A 170 LDDVQRAAVAYLVRSNRTEGRYI 192 (197)
T ss_dssp HHHHHHHHHHHSSGGGCEEEEEC
T ss_pred HHHHHHHHHHhCCccCeEEEEEe
Confidence 99999999999999999888887
No 24
>3amj_B Zinc peptidase inactive subunit; alpha/beta, zinc binding, hydrolase; 3.00A {Sphingomonas}
Probab=98.16 E-value=8.4e-05 Score=75.60 Aligned_cols=176 Identities=13% Similarity=0.119 Sum_probs=116.0
Q ss_pred cceeEEEEeccCCCCC--CCchHHHHHHHhhcCCCCCCCCCCC--C-CcccHHHHHHhhhcCceeEEEEeccccCCcccE
Q psy14217 318 ELSHVVIGLEGVSHQD--PDFVPACVLNILMGGGGSFSAGGPG--K-GMYTRLYTNVLNRHHWMFSATAYNHAYADTGLF 392 (529)
Q Consensus 318 ~~~~v~i~~~~~~~~~--~~~~~~~vl~~lL~~~~~f~~~~~g--~-g~~srL~~~lR~~~gl~Y~~~a~~~~~~~~g~f 392 (529)
+...+.+.+......+ .......++..++..|. + | .....-+.+..+..|..++++... -..
T Consensus 24 ~~~~~~l~~~~Gs~~e~~~~~g~ahlle~~l~~Gt-------~~~~~~~~~~~~~~~l~~~G~~~~a~t~~------~~t 90 (424)
T 3amj_B 24 PMLDVQVDFDAGSAREPADQVGVASMTASLMDAGT-------GSGKSALDENAIADRLADIGARLGGGAEA------DRA 90 (424)
T ss_dssp SEEEEEEEESCSGGGSCTTSTTHHHHHHHTGGGEE-------CSTTSCEEHHHHHHHHHHTTCEEEEEECS------SCE
T ss_pred CEEEEEEEEecCCccCCCccchHHHHHHHHHHhcc-------CCCccCCCHHHHHHHHHHhCCEEEeecCC------CeE
Confidence 3567777887655432 34556778888875321 0 0 011222333445557766654432 135
Q ss_pred EEEEEeCCCCH--HHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHhcCCC-CChhHHHH
Q psy14217 393 CIHASAPPSNV--KNIVDVLVKELVTMAGPIDADELSRAKKQLQSMLLMNLEARPAVFEDVGRQVLATGHR-KRPSTYIE 469 (529)
Q Consensus 393 ~i~~~~~p~~~--~~~~~~i~~~l~~l~~~it~~el~~ak~~l~~~~~~~~~~~~~~~~~l~~~~l~~~~~-~~~~~~~~ 469 (529)
.+++.+.+++. +.+++.+.+.+... .+++++|++.|..++..+....+++..++.......+..+.+ ..+. ..+
T Consensus 91 ~~~~~~~~~~~~l~~~l~ll~~~~~~p--~f~~~~~~~e~~~v~~e~~~~~~~p~~~~~~~~~~~~~~~~p~~~~~-~~~ 167 (424)
T 3amj_B 91 SFSLRVLSSPAERNSALTILRDILAHP--TFPAPVLERERARAIAGLREAQTQPGSILGRRFTELAYGKHPYGHVS-SVA 167 (424)
T ss_dssp EEEEEEESSHHHHHHHHHHHHHHHHCB--CCCHHHHHHHHHHHHHHHHHHTTSHHHHHHHHHHHHHHTTSGGGCCC-CHH
T ss_pred EEEEEEeccccChhHHHHHHHHHHhCC--CCCHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHhcCCCCCCCCCC-CHH
Confidence 56677777776 88888877666433 399999999999999999888788877766655555544332 2222 467
Q ss_pred HHccCCHHHHHHHHHHhccC-CCeEEEEcCCCCCCCHHHHHHHhh
Q psy14217 470 SIENVTEDDIRRVASRLLTS-QPSVAARGELINFPSYEDIHSGIQ 513 (529)
Q Consensus 470 ~i~~vT~edv~~~a~~~l~~-~~~~~v~G~~~~ip~~~~~~~~~~ 513 (529)
.|+++|.+|++++.++++.+ +.+++++||.. .+++.+.+.
T Consensus 168 ~l~~it~~~l~~f~~~~y~~~~~~l~v~Gd~~----~~~~~~~~~ 208 (424)
T 3amj_B 168 TLQKISRDQLVSFHRTHYVARTAVVTLVGDIT----RAEAETIAQ 208 (424)
T ss_dssp HHHHCCHHHHHHHHHHHSCTTSCEEEEEESCC----HHHHHHHHH
T ss_pred HHHhCCHHHHHHHHHHhcCCCceEEEEEeCCC----HHHHHHHHH
Confidence 78899999999999999987 68899999964 355554443
No 25
>3hdi_A Processing protease; CAGE structure, M16B peptidase, metallopeptidase, peptidasome, protease, hydrolase; 2.70A {Bacillus halodurans c-125}
Probab=98.07 E-value=0.0002 Score=72.78 Aligned_cols=165 Identities=13% Similarity=0.110 Sum_probs=113.0
Q ss_pred ceeEEEEeccCCCCCC--CchHHHHHHHhhcCCCC-CCCCCCCCCcccHHHHHHhhhcCceeEEEEeccccCCcccEEEE
Q psy14217 319 LSHVVIGLEGVSHQDP--DFVPACVLNILMGGGGS-FSAGGPGKGMYTRLYTNVLNRHHWMFSATAYNHAYADTGLFCIH 395 (529)
Q Consensus 319 ~~~v~i~~~~~~~~~~--~~~~~~vl~~lL~~~~~-f~~~~~g~g~~srL~~~lR~~~gl~Y~~~a~~~~~~~~g~f~i~ 395 (529)
...+.+.+...+..++ ......++..++..|.. ++ ...+.+.+ +..|..++++.... ...++
T Consensus 23 ~~~~~l~~~~Gs~~e~~~~~G~ah~leh~lf~gt~~~~--------~~~~~~~l-~~~G~~~na~t~~d------~t~~~ 87 (421)
T 3hdi_A 23 SVSIGIWVGTGSRYESAEENGISHFLEHMFFKGTNTRS--------AQEIAEFF-DSIGGQVNAFTSKE------YTCYY 87 (421)
T ss_dssp EEEEEEEESCCGGGCCGGGTTHHHHHHHHTTSBBSSSB--------HHHHHHHH-HTTTSCEEEEECSS------CEEEE
T ss_pred EEEEEEEEccccCCCCCCCCcHHHHHHHHhcCCCCCCC--------HHHHHHHH-HHhCCceeeeeccc------eEEEE
Confidence 4677777876555443 24456677777764321 11 02344443 55566655554432 33556
Q ss_pred EEeCCCCHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHhcCCC-C-ChhHHHHHHcc
Q psy14217 396 ASAPPSNVKNIVDVLVKELVTMAGPIDADELSRAKKQLQSMLLMNLEARPAVFEDVGRQVLATGHR-K-RPSTYIESIEN 473 (529)
Q Consensus 396 ~~~~p~~~~~~~~~i~~~l~~l~~~it~~el~~ak~~l~~~~~~~~~~~~~~~~~l~~~~l~~~~~-~-~~~~~~~~i~~ 473 (529)
+.+.+++.+++++.+.+.+... .++++++++.|..++..+....+++...+.......+..+.+ . ...-..+.|++
T Consensus 88 ~~~~~~~l~~~l~ll~d~~~~p--~f~~~~~~~ek~~v~~e~~~~~~~p~~~~~~~~~~~~~~~~p~~~~~~G~~~~l~~ 165 (421)
T 3hdi_A 88 AKVLDDHAGQAIDTLSDMFFHS--TFQKEELEKERKVVFEEIKMVDDTPDDIVHDLLSSATYGKHSLGYPILGTVETLNS 165 (421)
T ss_dssp EEEEGGGHHHHHHHHHHHHHSB--CCCHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTSGGGSCTTCCHHHHHH
T ss_pred EEecHHHHHHHHHHHHHHHhCC--CCCHHHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHhcCCCCCCCCCcCCHHHHHh
Confidence 6777788999988888777443 399999999999999999998888888776666665544432 1 12224577899
Q ss_pred CCHHHHHHHHHHhccC-CCeEEEEcCCC
Q psy14217 474 VTEDDIRRVASRLLTS-QPSVAARGELI 500 (529)
Q Consensus 474 vT~edv~~~a~~~l~~-~~~~~v~G~~~ 500 (529)
+|.+|++++.++++.+ +.+++++|+..
T Consensus 166 it~~~l~~f~~~~y~p~n~~l~v~Gd~~ 193 (421)
T 3hdi_A 166 FNEGMLRHYMDRFYTGDYVVISVAGNVH 193 (421)
T ss_dssp CCHHHHHHHHHHHSSTTTEEEEEEESCC
T ss_pred CCHHHHHHHHHHhcCcccEEEEEEeCCC
Confidence 9999999999999997 57889999964
No 26
>3cx5_B Cytochrome B-C1 complex subunit 2, mitochondrial; complex III, electron transfer complex, cytochrome BC1 complex, mitochondrialtransmembrane complex; HET: M3L SUC 6PH UMQ HEM SMA 8PE 9PE CN5 7PH CN3; 1.90A {Saccharomyces cerevisiae} SCOP: d.185.1.1 d.185.1.1 PDB: 1kb9_B* 1kyo_B* 1p84_B* 2ibz_B* 1ezv_B* 3cxh_B*
Probab=98.04 E-value=0.0002 Score=70.92 Aligned_cols=171 Identities=16% Similarity=0.120 Sum_probs=114.2
Q ss_pred ceeEEEEeccCCCCCCCchHHHHHHHhhcCC-CCCCCCCCCCCcccHHHHHHhhhcCceeEEEEeccccCCcccEEEEEE
Q psy14217 319 LSHVVIGLEGVSHQDPDFVPACVLNILMGGG-GSFSAGGPGKGMYTRLYTNVLNRHHWMFSATAYNHAYADTGLFCIHAS 397 (529)
Q Consensus 319 ~~~v~i~~~~~~~~~~~~~~~~vl~~lL~~~-~~f~~~~~g~g~~srL~~~lR~~~gl~Y~~~a~~~~~~~~g~f~i~~~ 397 (529)
...+.+.+.+.+..+.......++..++..| ..|+ ...+.+. .+..|..++++... -.+.+++.
T Consensus 12 ~v~~~~~~~~Gs~~e~~~G~ah~leh~lf~Gt~~~~--------~~~l~~~-l~~~G~~~na~t~~------~~t~~~~~ 76 (352)
T 3cx5_B 12 ISTLAVKVHGGSRYATKDGVAHLLNRFNFQNTNTRS--------ALKLVRE-SELLGGTFKSTLDR------EYITLKAT 76 (352)
T ss_dssp EEEEEEEESCSGGGCSSTTHHHHHHHHTTSCBSSSC--------HHHHHHH-HHHHTCEEEEEECS------SCEEEEEE
T ss_pred eEEEEEEEeeeccCCCcccHHHHHHHHhccCcCCCC--------HHHHHHH-HHHhCCeEEEEEcc------ceEEEEEE
Confidence 4556666765444344555677788777633 1111 0234443 35567666555432 24566677
Q ss_pred eCCCCHHHHHHHHHHHHHHhcCCCCHHHHH-HHHHHHHHHHHHhcCChHHHHHHHHHHHHhcCCCCChhHHHHHHccCCH
Q psy14217 398 APPSNVKNIVDVLVKELVTMAGPIDADELS-RAKKQLQSMLLMNLEARPAVFEDVGRQVLATGHRKRPSTYIESIENVTE 476 (529)
Q Consensus 398 ~~p~~~~~~~~~i~~~l~~l~~~it~~el~-~ak~~l~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~i~~vT~ 476 (529)
+.+++.+.+++.+.+.+... .+++++|+ +.|..++..+....+++...+.......+....+..+. ..+.|+++|.
T Consensus 77 ~~~~~l~~~l~ll~d~~~~p--~f~~~~~~~~~k~~v~~e~~~~~~~p~~~~~~~~~~~~~~~p~~~~~-~~~~l~~it~ 153 (352)
T 3cx5_B 77 FLKDDLPYYVNALADVLYKT--AFKPHELTESVLPAARYDYAVAEQCPVKSAEDQLYAITFRKGLGNPL-LYDGVERVSL 153 (352)
T ss_dssp EEGGGHHHHHHHHHHHHHHB--CCCHHHHHHTHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTTTSCS-SCCSSSCCCH
T ss_pred echhhHHHHHHHHHHHHhCC--CCCHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCCCcc-chhhhccCCH
Confidence 77788998888888777544 39999998 99999999998888888776655555444432222222 2578999999
Q ss_pred HHHHHHHHHhccC-CCeEEEEcCCCCCCCHHHHHHHh
Q psy14217 477 DDIRRVASRLLTS-QPSVAARGELINFPSYEDIHSGI 512 (529)
Q Consensus 477 edv~~~a~~~l~~-~~~~~v~G~~~~ip~~~~~~~~~ 512 (529)
+|++++.++++.+ +.+++++| . +.+++.+.+
T Consensus 154 ~~l~~f~~~~y~~~n~~l~v~G-~----~~~~~~~~i 185 (352)
T 3cx5_B 154 QDIKDFADKVYTKENLEVSGEN-V----VEADLKRFV 185 (352)
T ss_dssp HHHHHHHHHHCCGGGEEEEEES-S----CHHHHHHHH
T ss_pred HHHHHHHHHhCCcCcEEEEEeC-C----CHHHHHHHH
Confidence 9999999999987 56788898 5 566666665
No 27
>3eoq_A Putative zinc protease; two similar domains of beta(2)-alpha(2)-beta(2)-alpha(5)- beta structure, hydrolase; 2.29A {Thermus thermophilus}
Probab=98.03 E-value=0.00014 Score=73.70 Aligned_cols=163 Identities=12% Similarity=0.085 Sum_probs=111.3
Q ss_pred ceeEEEEeccCCCCCC--CchHHHHHHHhhcCCC-CCCCCCCCCCcccHHHHHHhhhcCceeEEEEeccccCCcccEEEE
Q psy14217 319 LSHVVIGLEGVSHQDP--DFVPACVLNILMGGGG-SFSAGGPGKGMYTRLYTNVLNRHHWMFSATAYNHAYADTGLFCIH 395 (529)
Q Consensus 319 ~~~v~i~~~~~~~~~~--~~~~~~vl~~lL~~~~-~f~~~~~g~g~~srL~~~lR~~~gl~Y~~~a~~~~~~~~g~f~i~ 395 (529)
...+.+.+...+..++ ......++..+|..|. .|+ ...+.+.+ +..|...+++... -...++
T Consensus 23 ~~~~~l~~~~Gs~~e~~~~~G~ah~lehmlf~Gt~~~~--------~~~~~~~l-~~~G~~~na~t~~------d~t~y~ 87 (406)
T 3eoq_A 23 SVALGYFVKTGARDETKEESGVSHFLEHMVFKGPEDMD--------ALAVNRAF-DRMGAQYNAFTSE------EATVYY 87 (406)
T ss_dssp CEEEEEEESCSGGGSCGGGTTHHHHHHHHHTTCCTTCC--------HHHHHHHH-HHTTCEEEEEECS------SCEEEE
T ss_pred eEEEEEEEccccCCCCCCCCCHHHHHHHHHhCCCCCCC--------HHHHHHHH-HHhCCCccceecC------CeEEEE
Confidence 4677788876554433 3445567777776432 221 02344443 4556655554432 234566
Q ss_pred EEeCCCCHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHhcCCC--CChhHHHHHHcc
Q psy14217 396 ASAPPSNVKNIVDVLVKELVTMAGPIDADELSRAKKQLQSMLLMNLEARPAVFEDVGRQVLATGHR--KRPSTYIESIEN 473 (529)
Q Consensus 396 ~~~~p~~~~~~~~~i~~~l~~l~~~it~~el~~ak~~l~~~~~~~~~~~~~~~~~l~~~~l~~~~~--~~~~~~~~~i~~ 473 (529)
+.+.+++.+++++.+.+.+ .- -+++++|++.|..++..+....+++..++.......+..+.+ ....-..+.|++
T Consensus 88 ~~~~~~~l~~~l~ll~d~~-~p--~f~~~~~~~ek~~v~~e~~~~~~~p~~~~~~~~~~~~~~~~p~~~~~~G~~~~i~~ 164 (406)
T 3eoq_A 88 GAVLPEFAYDLLGLFAKLL-RP--ALREEDFQTEKLVILEEIARYQDRPGFMAYEWARARFFQGHPLGNSVLGTRESITA 164 (406)
T ss_dssp EEECGGGHHHHHHHHHHHT-SC--CCCHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHTTCGGGCCSSCCHHHHHH
T ss_pred EEecHHHHHHHHHHHHHHh-cC--CCCHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCCCCCcCCHHHHhh
Confidence 7788888988888887665 33 399999999999999999988888887776666655544332 112223577899
Q ss_pred CCHHHHHHHHHHhccC-CCeEEEEcCC
Q psy14217 474 VTEDDIRRVASRLLTS-QPSVAARGEL 499 (529)
Q Consensus 474 vT~edv~~~a~~~l~~-~~~~~v~G~~ 499 (529)
+|.+|++++.++++.+ +.+++++||.
T Consensus 165 ~t~~~l~~f~~~~y~p~n~~l~v~Gd~ 191 (406)
T 3eoq_A 165 LTREGMAAYHRRRYLPKNMVLAATGRV 191 (406)
T ss_dssp CCHHHHHHHHHHHCCGGGEEEEEEESC
T ss_pred CCHHHHHHHHHHhCCccCEEEEEEcCC
Confidence 9999999999999997 6788999996
No 28
>3cx5_A Cytochrome B-C1 complex subunit 1, mitochondrial; complex III, electron transfer complex, cytochrome BC1 complex, mitochondrialtransmembrane complex; HET: M3L SUC 6PH UMQ HEM SMA 8PE 9PE CN5 7PH CN3; 1.90A {Saccharomyces cerevisiae} SCOP: d.185.1.1 d.185.1.1 PDB: 1p84_A* 2ibz_A* 1kb9_A* 3cxh_A* 1ezv_A* 1kyo_A*
Probab=97.99 E-value=0.00031 Score=71.40 Aligned_cols=171 Identities=12% Similarity=0.137 Sum_probs=115.9
Q ss_pred cceeEEEEeccCCCCC--CCchHHHHHHHhhcCCCCCCCCCCCCCcccHHHHHHhhhcCceeEEEEeccccCCcccEEEE
Q psy14217 318 ELSHVVIGLEGVSHQD--PDFVPACVLNILMGGGGSFSAGGPGKGMYTRLYTNVLNRHHWMFSATAYNHAYADTGLFCIH 395 (529)
Q Consensus 318 ~~~~v~i~~~~~~~~~--~~~~~~~vl~~lL~~~~~f~~~~~g~g~~srL~~~lR~~~gl~Y~~~a~~~~~~~~g~f~i~ 395 (529)
+...+.+.+......+ .......++..++..| +. ....+..|..++++... ....++
T Consensus 21 ~~~~~~l~~~~Gs~~e~~~~~g~ahlle~~l~~g-------------t~--~~~~~~~G~~~na~t~~------~~t~~~ 79 (431)
T 3cx5_A 21 HTASVGVVFGSGAANENPYNNGVSNLWKNIFLSK-------------EN--SAVAAKEGLALSSNISR------DFQSYI 79 (431)
T ss_dssp SSEEEEEEESCCGGGSCTTTTTHHHHHHHHHTSH-------------HH--HHHHHHTTCEEEEEECS------SCEEEE
T ss_pred CEEEEEEEEecCccCCCCCCcchHHHHHHHHhcC-------------CC--cccHHHcCCeeeeeecC------CeEEEE
Confidence 3467788887665443 3456677888888643 11 11235567666555432 235677
Q ss_pred EEeCCCCHHHHHHHHHHHHHHhcCC-CCHHHHHHHHHHHHHHHHHhcCCh-HHHHHHHHHHHHhcCCC--CChhHHHHHH
Q psy14217 396 ASAPPSNVKNIVDVLVKELVTMAGP-IDADELSRAKKQLQSMLLMNLEAR-PAVFEDVGRQVLATGHR--KRPSTYIESI 471 (529)
Q Consensus 396 ~~~~p~~~~~~~~~i~~~l~~l~~~-it~~el~~ak~~l~~~~~~~~~~~-~~~~~~l~~~~l~~~~~--~~~~~~~~~i 471 (529)
+.+.+++.+.+++.+.+.+...... +++++|++.|..++..+....+++ ..++.......+..+.+ .......+.|
T Consensus 80 ~~~~~~~l~~~l~ll~~~~~~p~~~~f~~~~~~~ek~~v~~e~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~g~~~~l 159 (431)
T 3cx5_A 80 VSSLPGSTDKSLDFLNQSFIQQKANLLSSSNFEATKKSVLKQVQDFEDNDHPNRVLEHLHSTAFQNTPLSLPTRGTLESL 159 (431)
T ss_dssp EEECSTTHHHHHHHHHHHHHTCSTTTTCHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHTTTSGGGSCTTCCHHHH
T ss_pred EEechhhHHHHHHHHHHHHhCcccccCCHHHHHHHHHHHHHHHHhhhcCchhHHHHHHHHHHhcCCCCCCCCCCCCHHHH
Confidence 7888889999999888777543211 899999999999999988766666 66555544444433322 1223346778
Q ss_pred ccCCHHHHHHHHHHhccC-CCeEEEEcCCCCCCCHHHHHHHhh
Q psy14217 472 ENVTEDDIRRVASRLLTS-QPSVAARGELINFPSYEDIHSGIQ 513 (529)
Q Consensus 472 ~~vT~edv~~~a~~~l~~-~~~~~v~G~~~~ip~~~~~~~~~~ 513 (529)
+++|.+|++++.++++.+ +..++++|+.. .+++.+.+.
T Consensus 160 ~~~t~~~l~~f~~~~y~~~~~~l~v~G~~~----~~~~~~~~~ 198 (431)
T 3cx5_A 160 ENLVVADLESFANNHFLNSNAVVVGTGNIK----HEDLVNSIE 198 (431)
T ss_dssp HTCCHHHHHHHHHHHSCGGGEEEEEEESCC----HHHHHHHHT
T ss_pred hhCCHHHHHHHHHhcCCCCcEEEEEEcCCC----HHHHHHHHH
Confidence 999999999999999987 67899999964 356666655
No 29
>3gwb_A Peptidase M16 inactive domain family protein; peptidase M16 family, PFL_5859, structural genomics, PSI-2, structure initiative; 1.90A {Pseudomonas fluorescens}
Probab=97.96 E-value=0.00011 Score=74.96 Aligned_cols=166 Identities=14% Similarity=0.099 Sum_probs=111.0
Q ss_pred cceeEEEEeccCCCCC-CCchHHHHHHHhhcCCCCCCCCCCCCCcc-cHHHHHHhhhcCceeEEEEeccccCCcccEEEE
Q psy14217 318 ELSHVVIGLEGVSHQD-PDFVPACVLNILMGGGGSFSAGGPGKGMY-TRLYTNVLNRHHWMFSATAYNHAYADTGLFCIH 395 (529)
Q Consensus 318 ~~~~v~i~~~~~~~~~-~~~~~~~vl~~lL~~~~~f~~~~~g~g~~-srL~~~lR~~~gl~Y~~~a~~~~~~~~g~f~i~ 395 (529)
+...+.+.+......+ .......++..++..|.. ... ..+.+ ..+..|..++++... ..+.++
T Consensus 34 ~~~~~~~~~~~Gs~~e~~~~g~a~lle~ll~~gt~--------~~~~~~l~~-~l~~~g~~~~a~t~~------~~~~~~ 98 (434)
T 3gwb_A 34 PMFDLRLIFAAGSSQDGNAPGVALLTNAMLNEGVA--------GKDVGAIAQ-GFEGLGADFGNGAYK------DMAVAS 98 (434)
T ss_dssp SEEEEEEEESCSGGGCTTSTTHHHHHHHHGGGEET--------TEEHHHHHH-HHHTTTCEEEEEECS------SCEEEE
T ss_pred CEEEEEEEEecccccCCcchhHHHHHHHHHhcCcc--------cCCHHHHHH-HHHHhCCEEEeeecC------CeEEEE
Confidence 3567788887665443 334455677777764311 011 12333 344557766665542 244556
Q ss_pred EEeCCCC--HHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHhcCCC-C-ChhHHHHHH
Q psy14217 396 ASAPPSN--VKNIVDVLVKELVTMAGPIDADELSRAKKQLQSMLLMNLEARPAVFEDVGRQVLATGHR-K-RPSTYIESI 471 (529)
Q Consensus 396 ~~~~p~~--~~~~~~~i~~~l~~l~~~it~~el~~ak~~l~~~~~~~~~~~~~~~~~l~~~~l~~~~~-~-~~~~~~~~i 471 (529)
+.+.+++ .+.+++.+.+.+... .+++++|++.|..++..+....+++...+.......+..+.+ . ......+.|
T Consensus 99 ~~~~~~~~~l~~~l~ll~~~~~~p--~f~~~~~~~~~~~~~~e~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~G~~~~l 176 (434)
T 3gwb_A 99 LRSLSAVDKREPALKLFAEVVGKP--TFPADSLARIKNQMLAGFEYQKQNPGKLASLELMKRLYGTHPYAHASDGDAKSI 176 (434)
T ss_dssp EEEECSHHHHHHHHHHHHHHHHSC--CCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTSTTSSCTTCCTTTT
T ss_pred EEecCccccHHHHHHHHHHHHhCC--CCCHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHhcCCCCCCCCCCCCHHHH
Confidence 6666666 888888887666432 399999999999999999988888887776655555544332 1 111235778
Q ss_pred ccCCHHHHHHHHHHhccC-CCeEEEEcCCC
Q psy14217 472 ENVTEDDIRRVASRLLTS-QPSVAARGELI 500 (529)
Q Consensus 472 ~~vT~edv~~~a~~~l~~-~~~~~v~G~~~ 500 (529)
+++|.+|++++.++++.+ +..++++|+..
T Consensus 177 ~~it~~~l~~f~~~~y~~~~~~l~v~G~~~ 206 (434)
T 3gwb_A 177 PPITLAQLKAFHAKAYAAGNVVIALVGDLS 206 (434)
T ss_dssp TTCCHHHHHHHHHHHSCGGGEEEEEEESCC
T ss_pred HhCCHHHHHHHHHHhcCcCCeEEEEEcCCC
Confidence 999999999999999987 57899999974
No 30
>1hr6_B Beta-MPP, mitochondrial processing peptidase beta subunit; hxxeh zinc-binding motif, hydrolase; HET: EPE; 2.50A {Saccharomyces cerevisiae} SCOP: d.185.1.1 d.185.1.1 PDB: 1hr7_B 1hr8_B* 1hr9_B*
Probab=97.95 E-value=0.00026 Score=72.36 Aligned_cols=166 Identities=14% Similarity=0.073 Sum_probs=108.7
Q ss_pred cceeEEEEeccCCCCCC--CchHHHHHHHhhcCCC-CCCCCCCCCCcccHHHHHHhhhcCceeEEEEeccccCCcccEEE
Q psy14217 318 ELSHVVIGLEGVSHQDP--DFVPACVLNILMGGGG-SFSAGGPGKGMYTRLYTNVLNRHHWMFSATAYNHAYADTGLFCI 394 (529)
Q Consensus 318 ~~~~v~i~~~~~~~~~~--~~~~~~vl~~lL~~~~-~f~~~~~g~g~~srL~~~lR~~~gl~Y~~~a~~~~~~~~g~f~i 394 (529)
+...+.+.+......++ ......++..++..|. .++ ...|.+. .+..|...+++... -.+.+
T Consensus 27 ~~~~~~~~~~~Gs~~e~~~~~G~ah~le~~~~~Gt~~~~--------~~~l~~~-l~~~g~~~na~t~~------~~t~~ 91 (443)
T 1hr6_B 27 SSATVGIFVDAGSRAENVKNNGTAHFLEHLAFKGTQNRP--------QQGIELE-IENIGSHLNAYTSR------ENTVY 91 (443)
T ss_dssp SEEEEEEEEECSGGGCCTTTTTHHHHHHHHTTSBBSSCB--------HHHHHHH-HHHTTCEEEEEECS------SEEEE
T ss_pred CEEEEEEEEccccCCCCCCCCcHHHHHHHHhhcCCCCCC--------HHHHHHH-HHHcCCeEEEEECC------CeEEE
Confidence 35667777776554332 3455677777775321 111 0233333 34456544443322 13466
Q ss_pred EEEeCCCCHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHhcCCC-C-ChhHHHHHHc
Q psy14217 395 HASAPPSNVKNIVDVLVKELVTMAGPIDADELSRAKKQLQSMLLMNLEARPAVFEDVGRQVLATGHR-K-RPSTYIESIE 472 (529)
Q Consensus 395 ~~~~~p~~~~~~~~~i~~~l~~l~~~it~~el~~ak~~l~~~~~~~~~~~~~~~~~l~~~~l~~~~~-~-~~~~~~~~i~ 472 (529)
++.+.+++.+++++.+.+.+... .++++++++.|..++..+....+++...+.......+..+.+ . ...-..+.|+
T Consensus 92 ~~~~~~~~l~~~l~ll~d~~~~p--~f~~~~~~~e~~~v~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~i~ 169 (443)
T 1hr6_B 92 YAKSLQEDIPKAVDILSDILTKS--VLDNSAIERERDVIIRESEEVDKMYDEVVFDHLHEITYKDQPLGRTILGPIKNIK 169 (443)
T ss_dssp EEEEEGGGHHHHHHHHHHHHHSB--CCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTSGGGSCSSCCHHHHH
T ss_pred EEEecHHHHHHHHHHHHHHHhCC--CCCHHHHHHHHHHHHHHHHhhhCChHHHHHHHHHHHhcCCCCCCCCCcCCHHHHh
Confidence 67777788888888888777543 399999999999999999988888877665555544433322 1 1112357788
Q ss_pred cCCHHHHHHHHHHhccC-CCeEEEEcCCC
Q psy14217 473 NVTEDDIRRVASRLLTS-QPSVAARGELI 500 (529)
Q Consensus 473 ~vT~edv~~~a~~~l~~-~~~~~v~G~~~ 500 (529)
++|.+++.++.++++.+ +.+++++||..
T Consensus 170 ~~~~~~l~~f~~~~y~~~n~~l~v~Gd~~ 198 (443)
T 1hr6_B 170 SITRTDLKDYITKNYKGDRMVLAGAGAVD 198 (443)
T ss_dssp HCCHHHHHHHHHHHCCGGGEEEEEEESCC
T ss_pred hCCHHHHHHHHHhcCcCCCEEEEEEcCCC
Confidence 99999999999999987 67889999974
No 31
>1pp9_A Ubiquinol-cytochrome C reductase complex core Pro mitochondrial; cytochrome BC1, membrane protein, heme protein, rieske iron protein, cytochrome B, complex III; HET: BHG HEM HEC SMA UQ CDL PEE; 2.10A {Bos taurus} SCOP: d.185.1.1 d.185.1.1 PDB: 1bgy_A* 1be3_A* 1l0n_A* 1ntk_A* 1ntm_A* 1ntz_A* 1nu1_A* 1l0l_A* 1ppj_A* 1sqq_A* 1sqv_A* 1sqx_A* 2a06_A* 2fyu_A* 2ybb_A* 1sqb_A* 1sqp_A* 1qcr_A* 1bcc_A* 2bcc_A* ...
Probab=97.88 E-value=0.0005 Score=70.42 Aligned_cols=165 Identities=13% Similarity=0.119 Sum_probs=109.8
Q ss_pred ceeEEEEeccCCCCCC--CchHHHHHHHhhcCC-CCCCCCCCCCCcccHHHHHHhhhcCceeEEEEeccccCCcccEEEE
Q psy14217 319 LSHVVIGLEGVSHQDP--DFVPACVLNILMGGG-GSFSAGGPGKGMYTRLYTNVLNRHHWMFSATAYNHAYADTGLFCIH 395 (529)
Q Consensus 319 ~~~v~i~~~~~~~~~~--~~~~~~vl~~lL~~~-~~f~~~~~g~g~~srL~~~lR~~~gl~Y~~~a~~~~~~~~g~f~i~ 395 (529)
...+.+.+......++ ......++..++..| ..++ . ..+.+. .+..|....++... + ...++
T Consensus 34 ~~~~~l~~~~Gs~~e~~~~~Glahllehmlf~GT~~~~----~----~~~~~~-l~~~G~~~na~t~~----d--~t~~~ 98 (446)
T 1pp9_A 34 TCTVGVWIDAGSRYESEKNNGAGYFVEHLAFKGTKNRP----G----NALEKE-VESMGAHLNAYSTR----E--HTAYY 98 (446)
T ss_dssp EEEEEEEESCSGGGCCTTTTTHHHHHHHHTTSCBSSST----T----THHHHH-HHHTTCEEEEEECS----S--CEEEE
T ss_pred EEEEEEEEccccCCCCCCCCcHHHHHHHHhcCCCCCCC----H----HHHHHH-HHHcCCEEEEEEcC----C--eEEEE
Confidence 4667777776554432 345567777777643 2222 1 234444 34456654444322 1 24566
Q ss_pred EEeCCCCHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHhcCCC--CChhHHHHHHcc
Q psy14217 396 ASAPPSNVKNIVDVLVKELVTMAGPIDADELSRAKKQLQSMLLMNLEARPAVFEDVGRQVLATGHR--KRPSTYIESIEN 473 (529)
Q Consensus 396 ~~~~p~~~~~~~~~i~~~l~~l~~~it~~el~~ak~~l~~~~~~~~~~~~~~~~~l~~~~l~~~~~--~~~~~~~~~i~~ 473 (529)
+.+..++.+++++.+.+.+... -++++++++.|..++..+....+++..++.......+..+.+ ....-..+.|++
T Consensus 99 ~~~~~~~l~~~l~ll~d~~~~p--~f~~~~~~~ek~~v~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~l~~ 176 (446)
T 1pp9_A 99 IKALSKDLPKAVELLADIVQNC--SLEDSQIEKERDVILQELQENDTSMRDVVFNYLHATAFQGTPLAQSVEGPSENVRK 176 (446)
T ss_dssp EEEEGGGHHHHHHHHHHHHHHB--CCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTSGGGSCSSCCHHHHHH
T ss_pred EEecHHHHHHHHHHHHHHHhCC--CCCHHHHHHHHHHHHHHHHhhhcCHHHHHHHHHHHHhcCCCCCCCCCcCCHHHHHh
Confidence 6777778999988888877654 399999999999999999888888876665554444433221 111223577888
Q ss_pred CCHHHHHHHHHHhccC-CCeEEEEcCCC
Q psy14217 474 VTEDDIRRVASRLLTS-QPSVAARGELI 500 (529)
Q Consensus 474 vT~edv~~~a~~~l~~-~~~~~v~G~~~ 500 (529)
+|.+|++++.++++.+ +.+++++||..
T Consensus 177 ~~~~~l~~f~~~~y~p~n~~l~v~Gd~~ 204 (446)
T 1pp9_A 177 LSRADLTEYLSRHYKAPRMVLAAAGGLE 204 (446)
T ss_dssp CCHHHHHHHHHHHCCGGGEEEEEEESCC
T ss_pred CCHHHHHHHHHhccCCCCEEEEEEcCCC
Confidence 9999999999999987 57889999964
No 32
>3ami_A Zinc peptidase; alpha/beta, zinc binding, hydrolase; 2.40A {Sphingomonas} PDB: 3amj_C
Probab=97.88 E-value=0.00047 Score=70.63 Aligned_cols=166 Identities=11% Similarity=0.089 Sum_probs=104.8
Q ss_pred cceeEEEEeccCCCCCC--CchHHHHHHHhhcCC-CCCCCCCCCCCcccHHHHHHhhhcCceeEEEEeccccCCcccEEE
Q psy14217 318 ELSHVVIGLEGVSHQDP--DFVPACVLNILMGGG-GSFSAGGPGKGMYTRLYTNVLNRHHWMFSATAYNHAYADTGLFCI 394 (529)
Q Consensus 318 ~~~~v~i~~~~~~~~~~--~~~~~~vl~~lL~~~-~~f~~~~~g~g~~srL~~~lR~~~gl~Y~~~a~~~~~~~~g~f~i 394 (529)
+...+.+.+......++ ......++..++..| ..|+ . ..|.+. .+..|...+++... + ...+
T Consensus 27 ~~v~~~~~~~~Gs~~e~~~~~Glah~lehmlf~Gt~~~~----~----~~l~~~-l~~~g~~~na~t~~----d--~t~y 91 (445)
T 3ami_A 27 PTLVHMVWYRVGSMDETTGTTGVAHALEHMMFKGTKDVG----P----GEFSKR-VAAMGGRDNAFTTR----D--YTAY 91 (445)
T ss_dssp SEEEEEEEESCCGGGCCTTCTTHHHHHHHHTTSCBSSSC----T----THHHHH-HHHTTCEEEEEECS----S--CEEE
T ss_pred CeEEEEEEEeeccCCCCCCCccHHHHHHHhhcCCCCCCC----H----HHHHHH-HHHhCCccccccCC----C--eEEE
Confidence 34667777765443322 344456666666533 2222 1 334433 44556554444332 2 2334
Q ss_pred EEEeCCCCHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHH-hcCChHHHHHHHHHHHHhcCCC-C-ChhHHHHHH
Q psy14217 395 HASAPPSNVKNIVDVLVKELVTMAGPIDADELSRAKKQLQSMLLM-NLEARPAVFEDVGRQVLATGHR-K-RPSTYIESI 471 (529)
Q Consensus 395 ~~~~~p~~~~~~~~~i~~~l~~l~~~it~~el~~ak~~l~~~~~~-~~~~~~~~~~~l~~~~l~~~~~-~-~~~~~~~~i 471 (529)
++.+.+++.+.+++.+.+.+... .+++++|++.|..++..+.+ ..+++..++.......+..+.+ . ...-..+.|
T Consensus 92 ~~~~~~~~l~~~l~ll~d~~~~p--~f~~~~~~~e~~~v~~e~~~~~~~~p~~~~~~~~~~~~~~~~p~~~~~~G~~e~l 169 (445)
T 3ami_A 92 YQQVPSSRLSDVMGLEADRMANL--VVDDELFKKEIQVIAEERRWRTDDKPRSKAYEALMAASYVAHPYRVPVIGWMNDI 169 (445)
T ss_dssp EEEEEGGGHHHHHHHHHHHHHCB--CCCHHHHHHHHHHHHHHHHHTGGGCHHHHHHHHHHHHHCSSSGGGSCTTCCHHHH
T ss_pred EEECCHHHHHHHHHHHHHHhcCC--CCCHHHHHHHHHHHHHHHHhcccCChHHHHHHHHHHHhccCCCCCCCCCCCHHHH
Confidence 45566778888888887766433 39999999999999999884 4567776655555544443322 1 111236778
Q ss_pred ccCCHHHHHHHHHHhccC-CCeEEEEcCCC
Q psy14217 472 ENVTEDDIRRVASRLLTS-QPSVAARGELI 500 (529)
Q Consensus 472 ~~vT~edv~~~a~~~l~~-~~~~~v~G~~~ 500 (529)
+++|.+|++++.++++.+ +.+++++||..
T Consensus 170 ~~it~~~l~~f~~~~y~p~n~~l~vvGd~d 199 (445)
T 3ami_A 170 QNMTAQDVRDWYKRWYGPNNATVVVVGDVE 199 (445)
T ss_dssp HHCCHHHHHHHHHHHCSGGGEEEEEEESCC
T ss_pred hhCCHHHHHHHHHHhCCccceEEEEEcCCC
Confidence 899999999999999987 68899999963
No 33
>1pp9_B Ubiquinol-cytochrome C reductase complex core Pro mitochondrial; cytochrome BC1, membrane protein, heme protein, rieske iron protein, cytochrome B, complex III; HET: BHG HEM HEC SMA UQ CDL PEE; 2.10A {Bos taurus} SCOP: d.185.1.1 d.185.1.1 PDB: 1bgy_B* 1be3_B* 1l0n_B* 1ntk_B* 1ntm_B* 1ntz_B* 1nu1_B* 1l0l_B* 1ppj_B* 1sqq_B* 1sqv_B* 1sqx_B* 2a06_B* 2fyu_B* 2ybb_B* 1sqb_B* 1sqp_B* 1qcr_B* 2bcc_B* 3bcc_B* ...
Probab=97.83 E-value=0.001 Score=67.81 Aligned_cols=173 Identities=12% Similarity=0.038 Sum_probs=114.5
Q ss_pred cceeEEEEeccCCCCC--CCchHHHHHHHhhcCCCCCCCCCCCCCcc-cHHHHHHhhhcCceeEEEEeccccCCcccEEE
Q psy14217 318 ELSHVVIGLEGVSHQD--PDFVPACVLNILMGGGGSFSAGGPGKGMY-TRLYTNVLNRHHWMFSATAYNHAYADTGLFCI 394 (529)
Q Consensus 318 ~~~~v~i~~~~~~~~~--~~~~~~~vl~~lL~~~~~f~~~~~g~g~~-srL~~~lR~~~gl~Y~~~a~~~~~~~~g~f~i 394 (529)
+...+.+.+......+ .......++..++..|.. .+. ..+.+. .+..|..++++.. ...+.+
T Consensus 43 ~~~~~~~~~~~Gs~~e~~~~~g~a~lle~~~~~gt~--------~~~~~~~~~~-l~~~G~~~na~t~------~~~t~~ 107 (439)
T 1pp9_B 43 PASRIGLFIKAGSRYENSNNLGTSHLLRLASSLTTK--------GASSFKITRG-IEAVGGKLSVTST------RENMAY 107 (439)
T ss_dssp SEEEEEEEESCSGGGCCTTSTTHHHHHHHTTTSCBS--------SSCHHHHHHH-HHHTTCEEEEEEC------SSCEEE
T ss_pred ceEEEEEEEeccccCCCCCcCcHHHHHHHhhcCCCC--------cCCHHHHHHH-HHHhCCeEEEEec------ceEEEE
Confidence 4577778887655433 245566777877753311 111 233333 4455766655443 234566
Q ss_pred EEEeCCCCHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHhcCCC--CChhHHHHHHc
Q psy14217 395 HASAPPSNVKNIVDVLVKELVTMAGPIDADELSRAKKQLQSMLLMNLEARPAVFEDVGRQVLATGHR--KRPSTYIESIE 472 (529)
Q Consensus 395 ~~~~~p~~~~~~~~~i~~~l~~l~~~it~~el~~ak~~l~~~~~~~~~~~~~~~~~l~~~~l~~~~~--~~~~~~~~~i~ 472 (529)
++.+.+++.+.+++.+.+.+... .+++++|++.|..++..+....+++...+.......+.. .+ .......+.|+
T Consensus 108 ~~~~~~~~l~~~l~ll~~~~~~p--~f~~~~~~~~k~~v~~e~~~~~~~p~~~~~~~~~~~~~~-~~~~~~~~g~~~~l~ 184 (439)
T 1pp9_B 108 TVECLRDDVDILMEFLLNVTTAP--EFRRWEVAALQPQLRIDKAVALQNPQAHVIENLHAAAYR-NALANSLYCPDYRIG 184 (439)
T ss_dssp EEEEEGGGHHHHHHHHHHHHHCB--CCCHHHHHHHHHHHHHHHHHHTTSHHHHHHHHHHHHHBS-SGGGSCSSCCGGGTT
T ss_pred EEEeehhhHHHHHHHHHHHHhCC--CCCHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHhc-CCCCCCccCCHHHHh
Confidence 77777788999988888777543 399999999999999999887778877665555554432 21 11122346689
Q ss_pred cCCHHHHHHHHHHhccC-CCeEEEEcCCCCCCCHHHHHHHhh
Q psy14217 473 NVTEDDIRRVASRLLTS-QPSVAARGELINFPSYEDIHSGIQ 513 (529)
Q Consensus 473 ~vT~edv~~~a~~~l~~-~~~~~v~G~~~~ip~~~~~~~~~~ 513 (529)
++|.+|++++.++++.+ +.+++++|+ +.+++.+.+.
T Consensus 185 ~it~~~l~~f~~~~y~~~~~~l~v~G~-----~~~~~~~~~~ 221 (439)
T 1pp9_B 185 KVTPVELHDYVQNHFTSARMALIGLGV-----SHPVLKQVAE 221 (439)
T ss_dssp TCCHHHHHHHHHHHCSGGGEEEEEESS-----CHHHHHHHHH
T ss_pred hcCHHHHHHHHHHhCCCCceEEEEeCC-----CHHHHHHHHH
Confidence 99999999999999987 678899997 3455555444
No 34
>3d3y_A Uncharacterized protein; APC29635, conserved protein, enterococcus faecalis V583, STR genomics, PSI-2, protein structure initiative; 1.95A {Enterococcus faecalis}
Probab=97.77 E-value=0.00037 Score=70.66 Aligned_cols=179 Identities=12% Similarity=0.125 Sum_probs=113.7
Q ss_pred ceeEEEEeccCCCCCCCchHHHHHHHhhcCCCCCCCCCCCCCc-ccHHHHHHhhhc-CceeEEEEeccccCCcccEEEEE
Q psy14217 319 LSHVVIGLEGVSHQDPDFVPACVLNILMGGGGSFSAGGPGKGM-YTRLYTNVLNRH-HWMFSATAYNHAYADTGLFCIHA 396 (529)
Q Consensus 319 ~~~v~i~~~~~~~~~~~~~~~~vl~~lL~~~~~f~~~~~g~g~-~srL~~~lR~~~-gl~Y~~~a~~~~~~~~g~f~i~~ 396 (529)
...+.+.+..+... +......++..+|..|. ++. ...-+.+..+.. |..++++...... ...+.+++
T Consensus 24 ~~~~~~~~~~g~~~-e~~g~a~ll~~~l~~gt--------~~~~~~~~~~~~l~~~~G~~~~a~t~~~~t--~~~~~~~~ 92 (425)
T 3d3y_A 24 TVRLLVRFNTRLNH-ETITKRTLLSSLMETNS--------LNYPNQVKLSERLAELYGASFGIGVSKKGN--QHWFNISM 92 (425)
T ss_dssp EEEEEEEEEEECCT-TTHHHHHHHHHHHHHCC--------SSSCSHHHHHHHHHHTTSCEEEEEEEEETT--EEEEEEEE
T ss_pred eEEEEEEEeCCCCc-cchhHHHHHHHHHHhhh--------hcCCCHHHHHHHHHHHhCceEeeeeeecCc--eEEEEEEE
Confidence 46677777765533 33455677777775321 111 111233334444 7777776543211 22355666
Q ss_pred EeCCC-------CHHHHHHHHHHHHHHhc--C-CCCHHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHh-cCCC-C-C
Q psy14217 397 SAPPS-------NVKNIVDVLVKELVTMA--G-PIDADELSRAKKQLQSMLLMNLEARPAVFEDVGRQVLA-TGHR-K-R 463 (529)
Q Consensus 397 ~~~p~-------~~~~~~~~i~~~l~~l~--~-~it~~el~~ak~~l~~~~~~~~~~~~~~~~~l~~~~l~-~~~~-~-~ 463 (529)
.+.++ +.+.+++.+.+.+.... . ++++++|++.|..++..+....+++...+.......+. .+.+ . .
T Consensus 93 ~~~~~~~~~~~~~l~~~l~ll~~~l~~p~~~~~~f~~~~~~~~k~~v~~e~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~ 172 (425)
T 3d3y_A 93 NIVNDHYLQDSQVLAEAVDFLKEIIFAPNIQAGQFEAETFQREKENLKAYLESIVEDKQTYASLALQSVYFNQSEDQKIP 172 (425)
T ss_dssp EEECGGGCSSCCHHHHHHHHHHHHHHSCSEETTEECHHHHHHHHHHHHHHHHHHHHSHHHHHHHHHHHHHTTTCTTTTSC
T ss_pred EecChhhccchhHHHHHHHHHHHHHhCcccccCCCCHHHHHHHHHHHHHHHHHHhhCHHHHHHHHHHHHhccCCCCccCC
Confidence 65444 58888888887775432 1 28999999999999999988777887766555555554 3332 2 1
Q ss_pred hhHHHHHHccCCHHHHHHHHHHhccC-CCeEEEEcCCCCCCCHHHHHHHh
Q psy14217 464 PSTYIESIENVTEDDIRRVASRLLTS-QPSVAARGELINFPSYEDIHSGI 512 (529)
Q Consensus 464 ~~~~~~~i~~vT~edv~~~a~~~l~~-~~~~~v~G~~~~ip~~~~~~~~~ 512 (529)
.....+.|+++|.+|++++.++++.+ +..++++|+.. .+++.+.+
T Consensus 173 ~~g~~~~l~~~t~~~l~~f~~~~y~~~~~~l~v~G~~~----~~~~~~~~ 218 (425)
T 3d3y_A 173 SFGTVAALAEETAASLAAYYQKMLAEDQVDIFVLGDVN----EAELVPLF 218 (425)
T ss_dssp TTCCHHHHHHCCHHHHHHHHHHHHHHSEEEEEEEESCC----HHHHHHHH
T ss_pred CCCCHHHHHhCCHHHHHHHHHHHHhcCCeEEEEECCCC----HHHHHHHH
Confidence 22346778899999999999999986 67889999963 35555544
No 35
>1hr6_A Alpha-MPP, mitochondrial processing peptidase alpha subunit; hxxeh zinc-binding motif, hydrolase; HET: EPE; 2.50A {Saccharomyces cerevisiae} SCOP: d.185.1.1 d.185.1.1 PDB: 1hr7_A 1hr8_A* 1hr9_A*
Probab=97.73 E-value=0.00062 Score=70.43 Aligned_cols=164 Identities=12% Similarity=0.025 Sum_probs=110.4
Q ss_pred ceeEEEEeccCCCCC--CCchHHHHHHHhhcCCC-CCCCCCCCCCcccHHHHHHhhhcCceeEEEEeccccCCcccEEEE
Q psy14217 319 LSHVVIGLEGVSHQD--PDFVPACVLNILMGGGG-SFSAGGPGKGMYTRLYTNVLNRHHWMFSATAYNHAYADTGLFCIH 395 (529)
Q Consensus 319 ~~~v~i~~~~~~~~~--~~~~~~~vl~~lL~~~~-~f~~~~~g~g~~srL~~~lR~~~gl~Y~~~a~~~~~~~~g~f~i~ 395 (529)
.+.+.+.+...+..+ .......++..++..|. .|+ ...+... .+..|..++++... -...++
T Consensus 26 ~~~~~l~~~~Gs~~e~~~~~Glah~lehm~f~Gt~~~~--------~~~~~~~-le~~G~~~na~t~~------d~t~y~ 90 (475)
T 1hr6_A 26 FSALGLYIDAGSRFEGRNLKGCTHILDRLAFKSTEHVE--------GRAMAET-LELLGGNYQCTSSR------ENLMYQ 90 (475)
T ss_dssp SEEEEEEESCCGGGCTTTTTTHHHHHHHTTTSCBTTBC--------HHHHHHH-HHHTTSCEEEEECS------SCEEEE
T ss_pred EEEEEEEEccccCCCCCCCCcHHHHHHHHHhCCCCCCC--------HHHHHHH-HHHcCCEEEEEEcc------CeEEEE
Confidence 467778887655433 24455677777776432 111 0233333 35557766555432 235667
Q ss_pred EEeCCCCHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHhcCCC--CChhHHHHHHcc
Q psy14217 396 ASAPPSNVKNIVDVLVKELVTMAGPIDADELSRAKKQLQSMLLMNLEARPAVFEDVGRQVLATGHR--KRPSTYIESIEN 473 (529)
Q Consensus 396 ~~~~p~~~~~~~~~i~~~l~~l~~~it~~el~~ak~~l~~~~~~~~~~~~~~~~~l~~~~l~~~~~--~~~~~~~~~i~~ 473 (529)
+.+.+++++.+++.+.+.+... .+++++|++.|..++..+....+++..++.......+..+.+ .......+.|++
T Consensus 91 ~~~~~~~l~~~l~ll~d~~~~p--~f~~~~~~~er~~v~~e~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~G~~~~l~~ 168 (475)
T 1hr6_A 91 ASVFNQDVGKMLQLMSETVRFP--KITEQELQEQKLSAEYEIDEVWMKPELVLPELLHTAAYSGETLGSPLICPRGLIPS 168 (475)
T ss_dssp EEECGGGHHHHHHHHHHHHHCB--CCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTSGGGSCSSCCGGGGGG
T ss_pred EEecHHHHHHHHHHHHHHHhCC--CCCHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHhcCCCCCCCCCcCCHHHHhh
Confidence 7778888998888888777543 399999999999999999887788877766665555543321 111223467899
Q ss_pred CCHHHHHHHHHHhccC-CCeEEEEcCCC
Q psy14217 474 VTEDDIRRVASRLLTS-QPSVAARGELI 500 (529)
Q Consensus 474 vT~edv~~~a~~~l~~-~~~~~v~G~~~ 500 (529)
+|.+|++++.++++.+ +..++++| ..
T Consensus 169 it~~~l~~f~~~~y~p~n~~l~v~G-~d 195 (475)
T 1hr6_A 169 ISKYYLLDYRNKFYTPENTVAAFVG-VP 195 (475)
T ss_dssp CCHHHHHHHHHHHCCGGGEEEEEES-SC
T ss_pred cCHHHHHHHHHHhCCcccEEEEEeC-CC
Confidence 9999999999999987 67889999 53
No 36
>3go9_A Insulinase family protease; IDP00573, structural genomics, for structural genomics of infectious diseases, csgid, HYDR; HET: MSE; 1.62A {Yersinia pestis}
Probab=95.84 E-value=0.0068 Score=62.85 Aligned_cols=160 Identities=11% Similarity=0.030 Sum_probs=86.4
Q ss_pred ceeEEEEeccCCCCCC--CchHHHHHHHhhcCC-CCCCCCCCCCCcccHHHHHHhhh----cCceeEEEEeccccCCccc
Q psy14217 319 LSHVVIGLEGVSHQDP--DFVPACVLNILMGGG-GSFSAGGPGKGMYTRLYTNVLNR----HHWMFSATAYNHAYADTGL 391 (529)
Q Consensus 319 ~~~v~i~~~~~~~~~~--~~~~~~vl~~lL~~~-~~f~~~~~g~g~~srL~~~lR~~----~gl~Y~~~a~~~~~~~~g~ 391 (529)
...+.+.+...+..++ ......++.++|..| ..|+ ..=+.++.++ .|...+++.. .+.
T Consensus 49 ~v~~~l~~~~Gs~~e~~~~~Glahllehmlf~GT~~~~---------~~~~~~~~~~~~~~~G~~~na~t~----~d~-- 113 (492)
T 3go9_A 49 RIELRLIVNTGSLSENTQEVGFAHLLPRLALMSSASFT---------PAQLQSLWQQGIDNERPLPPAITS----YDF-- 113 (492)
T ss_dssp CEEEEEEESCCGGGCCGGGTTHHHHHHHHHHHCCTTCC---------HHHHHHHHHTCSCSSSCCCSEEEC----SSC--
T ss_pred eEEEEEEEecccCCCCCCCcCHHHHHHHHHhcCCCCCC---------HHHHHHHHHHHHHhcCCCcceEeC----CCe--
Confidence 4677788876555443 344567777777643 2221 2112222122 2333333322 222
Q ss_pred EEEEEEeCC---CCHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHhcCC-CCChhHH
Q psy14217 392 FCIHASAPP---SNVKNIVDVLVKELVTMAGPIDADELSRAKKQLQSMLLMNLEARPAVFEDVGRQVLATGH-RKRPSTY 467 (529)
Q Consensus 392 f~i~~~~~p---~~~~~~~~~i~~~l~~l~~~it~~el~~ak~~l~~~~~~~~~~~~~~~~~l~~~~l~~~~-~~~~~~~ 467 (529)
..+++.+.. ++.+++++.+.+.+... .++++++++.|..++..+....+++... .++..+.... ...+..
T Consensus 114 t~y~~~~~~~~~~~l~~~l~ll~d~~~~p--~f~~~~~~~er~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~- 187 (492)
T 3go9_A 114 TLYSLSLPNNRPDLLKDALAWLSDTAGNL--AVSEQTVNAALNTATDPIATFPQNIQEP---WWRYRLKGSSLIGHDPG- 187 (492)
T ss_dssp EEEEEEECTTCHHHHHHHHHHHHHHHHCC--CCSHHHHHHHHTCSSCCEEESSSCTTCH---HHHHHTTTSTTTTCCTT-
T ss_pred EEEEEECCCCcHHHHHHHHHHHHHHHhCC--CCCHHHHHHHHHHHHHHHHhcccchhhH---HHHHHhccCCcccCCCc-
Confidence 344445544 45667776666555332 3999999999875543333222233211 1121111111 111110
Q ss_pred HHHHccCCHHHHHHHHHHhccC-CCeEEEEcCC
Q psy14217 468 IESIENVTEDDIRRVASRLLTS-QPSVAARGEL 499 (529)
Q Consensus 468 ~~~i~~vT~edv~~~a~~~l~~-~~~~~v~G~~ 499 (529)
.+.|+++|.+|++++.++++.+ +..++++||.
T Consensus 188 ~~~i~~it~~dL~~fy~~~Y~p~n~~l~vvGdv 220 (492)
T 3go9_A 188 QPVTQPVDVEKLKQFYQQWYTPDAMTLYVVGNV 220 (492)
T ss_dssp CCCCSSCCHHHHHHHHHHHCCGGGEEEEEEESC
T ss_pred hhhhhcCCHHHHHHHHHHhcCcCceEEEEEcCC
Confidence 2458999999999999999997 6789999996
No 37
>2kvc_A Putative uncharacterized protein; structural genomics, seattle structural genomi for infectious disease, ssgcid, unknown function; NMR {Mycobacterium tuberculosis}
Probab=27.44 E-value=61 Score=24.93 Aligned_cols=72 Identities=18% Similarity=0.220 Sum_probs=43.0
Q ss_pred HHHHHHHHHHhcCCC--CChhHHH---HHH-ccCCHHHHHHHHHHhccCC------CeEEEEcCCCCCCCHHHHHHHhh-
Q psy14217 447 VFEDVGRQVLATGHR--KRPSTYI---ESI-ENVTEDDIRRVASRLLTSQ------PSVAARGELINFPSYEDIHSGIQ- 513 (529)
Q Consensus 447 ~~~~l~~~~l~~~~~--~~~~~~~---~~i-~~vT~edv~~~a~~~l~~~------~~~~v~G~~~~ip~~~~~~~~~~- 513 (529)
++..+..+ +.-|++ ....+|. +.+ ..+|.++|.+++..+.... ...+|..=....|+.++|.+--+
T Consensus 7 ~l~siv~W-LRaGYP~GVP~~Dy~PLlALL~r~Ltdeev~~Va~~L~~~~~i~~~dI~~~I~~vt~~~Ps~eDI~RV~ar 85 (103)
T 2kvc_A 7 FLTSIVAW-LRAGYPEGIPPTDSFAVLALLCRRLSHDEVKAVANELMRLGDFDQIDIGVVITHFTDELPSPEDVERVRAR 85 (103)
T ss_dssp HHHHHHHH-HHHHCTTCCCHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHTSSCSSCHHHHHHSCCSSCSCHHHHHHHHHH
T ss_pred HHHHHHHH-HHccCCCCCCCcchHHHHHHHhccCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHhccCCCHHHHHHHHHH
Confidence 44455554 445555 2345554 333 5799999999999997532 22222223345788888876655
Q ss_pred -cCCCCC
Q psy14217 514 -NNGVLP 519 (529)
Q Consensus 514 -~~~~~~ 519 (529)
.+++-|
T Consensus 86 Laa~GWP 92 (103)
T 2kvc_A 86 LAAQGWP 92 (103)
T ss_dssp HGGGCCC
T ss_pred HHhcCCC
Confidence 555544
No 38
>3lh2_S 4E10_1VI7A_S0_002_N (T88); epitope-scaffold, immune system; 2.65A {Artificial gene}
Probab=23.26 E-value=1.5e+02 Score=20.93 Aligned_cols=47 Identities=11% Similarity=0.025 Sum_probs=36.2
Q ss_pred HHHHHHHHHHhCCEeeEeeccceEEEEEEecCCCHHHHHHHHHHhhc
Q psy14217 123 KDAIAQSLEKIGGICDCLSSRDTFIYAASAATSGLDTVMKILGDVVL 169 (529)
Q Consensus 123 ~~~l~~~l~~~g~~~~~~t~~~~~~~~~~~~~~~l~~~l~ll~~~l~ 169 (529)
...+...++..|+.+--....+...+.+.++.+..+.+.+.|.+...
T Consensus 19 ~g~v~~~L~~~~~~I~~~~Y~~~V~l~v~vp~~~~~~~~~~L~d~t~ 65 (76)
T 3lh2_S 19 ITGILWLLGQVDGKIINSDVQAFVLLRVALPAAKVAEFSAKLADFSG 65 (76)
T ss_dssp HHHHHHHHHHTTCEEEEEEEEEEEEEEEEECC-CC-CHHHHHHHHHT
T ss_pred HHHHHHHHHHCCCEEEcccccCeEEEEEEECHHHHHHHHHHHHHHhC
Confidence 45788889999988666556667899999999999888888888664
Done!