BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy14218
(99 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|4I4T|B Chain B, Crystal Structure Of Tubulin-rb3-ttl-zampanolide Complex
pdb|4I4T|D Chain D, Crystal Structure Of Tubulin-rb3-ttl-zampanolide Complex
pdb|4I50|B Chain B, Crystal Structure Of Tubulin-stathmin-ttl-epothilone A
Complex
pdb|4I50|D Chain D, Crystal Structure Of Tubulin-stathmin-ttl-epothilone A
Complex
pdb|4I55|B Chain B, Crystal Structure Of Tubulin-stathmin-ttl Complex
pdb|4I55|D Chain D, Crystal Structure Of Tubulin-stathmin-ttl Complex
pdb|4IIJ|B Chain B, Crystal Structure Of Tubulin-stathmin-ttl-apo Complex
pdb|4IIJ|D Chain D, Crystal Structure Of Tubulin-stathmin-ttl-apo Complex
pdb|4IHJ|B Chain B, Crystal Structure Of Tubulin-stathmin-ttl-adp Complex
pdb|4IHJ|D Chain D, Crystal Structure Of Tubulin-stathmin-ttl-adp Complex
Length = 445
Score = 192 bits (487), Expect = 5e-50, Method: Composition-based stats.
Identities = 84/89 (94%), Positives = 89/89 (100%)
Query: 1 FWEIISDEHGIDPTGAYHGDSDLQLERINVYYNEASGSKYVPRAILVDLEPGTMDAVRSG 60
FWE+ISDEHGIDPTG+YHGDSDLQLERINVYYNEA+G+KYVPRAILVDLEPGTMD+VRSG
Sbjct: 20 FWEVISDEHGIDPTGSYHGDSDLQLERINVYYNEATGNKYVPRAILVDLEPGTMDSVRSG 79
Query: 61 PFGQIFRPDNFVFGQSGAGNNWAKGHYTE 89
PFGQIFRPDNFVFGQSGAGNNWAKGHYTE
Sbjct: 80 PFGQIFRPDNFVFGQSGAGNNWAKGHYTE 108
>pdb|1FFX|B Chain B, Tubulin:stathmin-Like Domain Complex
pdb|1FFX|D Chain D, Tubulin:stathmin-Like Domain Complex
pdb|1JFF|B Chain B, Refined Structure Of Alpha-Beta Tubulin From Zinc-Induced
Sheets Stabilized With Taxol
pdb|1IA0|B Chain B, Kif1a Head-Microtubule Complex Structure In Atp-Form
pdb|1SA0|B Chain B, Tubulin-Colchicine: Stathmin-Like Domain Complex
pdb|1SA0|D Chain D, Tubulin-Colchicine: Stathmin-Like Domain Complex
pdb|1SA1|B Chain B, Tubulin-Podophyllotoxin: Stathmin-Like Domain Complex
pdb|1SA1|D Chain D, Tubulin-Podophyllotoxin: Stathmin-Like Domain Complex
pdb|2HXF|B Chain B, Kif1a Head-Microtubule Complex Structure In Amppnp-Form
pdb|2HXH|B Chain B, Kif1a Head-Microtubule Complex Structure In Adp-Form
pdb|2P4N|B Chain B, Human Monomeric Kinesin (1bg2) And Bovine Tubulin (1jff)
Docked Into The 9-Angstrom Cryo-Em Map Of
Nucleotide-Free Kinesin Complexed To The Microtubule
pdb|3EDL|B Chain B, Kinesin13-Microtubule Ring Complex
pdb|3EDL|G Chain G, Kinesin13-Microtubule Ring Complex
pdb|3DCO|B Chain B, Drosophila Nod (3dc4) And Bovine Tubulin (1jff) Docked
Into The 11-Angstrom Cryo-Em Map Of Nucleotide-Free Nod
Complexed To The Microtubule
pdb|2WBE|B Chain B, Kinesin-5-Tubulin Complex With Amppnp
pdb|3IZ0|B Chain B, Human Ndc80 Bonsai Decorated Microtubule
pdb|4ABO|A Chain A, Mal3 Ch Domain Homology Model And Mammalian Tubulin (2xrp)
Docked Into The 8.6-Angstrom Cryo-Em Map Of
Mal3-Gtpgammas-Microtubules
pdb|4ABO|C Chain C, Mal3 Ch Domain Homology Model And Mammalian Tubulin (2xrp)
Docked Into The 8.6-Angstrom Cryo-Em Map Of
Mal3-Gtpgammas-Microtubules
pdb|4ABO|E Chain E, Mal3 Ch Domain Homology Model And Mammalian Tubulin (2xrp)
Docked Into The 8.6-Angstrom Cryo-Em Map Of
Mal3-Gtpgammas-Microtubules
pdb|4ABO|G Chain G, Mal3 Ch Domain Homology Model And Mammalian Tubulin (2xrp)
Docked Into The 8.6-Angstrom Cryo-Em Map Of
Mal3-Gtpgammas-Microtubules
Length = 445
Score = 192 bits (487), Expect = 5e-50, Method: Composition-based stats.
Identities = 84/89 (94%), Positives = 89/89 (100%)
Query: 1 FWEIISDEHGIDPTGAYHGDSDLQLERINVYYNEASGSKYVPRAILVDLEPGTMDAVRSG 60
FWE+ISDEHGIDPTG+YHGDSDLQLERINVYYNEA+G+KYVPRAILVDLEPGTMD+VRSG
Sbjct: 20 FWEVISDEHGIDPTGSYHGDSDLQLERINVYYNEAAGNKYVPRAILVDLEPGTMDSVRSG 79
Query: 61 PFGQIFRPDNFVFGQSGAGNNWAKGHYTE 89
PFGQIFRPDNFVFGQSGAGNNWAKGHYTE
Sbjct: 80 PFGQIFRPDNFVFGQSGAGNNWAKGHYTE 108
>pdb|2XRP|A Chain A, Human Doublecortin N-Dc Repeat (1mjd) And Mammalian
Tubulin (1jff And 3hke) Docked Into The 8-Angstrom
Cryo-Em Map Of Doublecortin-Stabilised Microtubules
pdb|2XRP|C Chain C, Human Doublecortin N-Dc Repeat (1mjd) And Mammalian
Tubulin (1jff And 3hke) Docked Into The 8-Angstrom
Cryo-Em Map Of Doublecortin-Stabilised Microtubules
pdb|2XRP|E Chain E, Human Doublecortin N-Dc Repeat (1mjd) And Mammalian
Tubulin (1jff And 3hke) Docked Into The 8-Angstrom
Cryo-Em Map Of Doublecortin-Stabilised Microtubules
pdb|2XRP|G Chain G, Human Doublecortin N-Dc Repeat (1mjd) And Mammalian
Tubulin (1jff And 3hke) Docked Into The 8-Angstrom
Cryo-Em Map Of Doublecortin-Stabilised Microtubules
pdb|4ATU|A Chain A, Human Doublecortin N-Dc Repeat Plus Linker, And Tubulin
(2xrp) Docked Into An 8a Cryo-Em Map Of
Doublecortin-Stabilised Microtubules Reconstructed In
Absence Of Kinesin
pdb|4ATU|C Chain C, Human Doublecortin N-Dc Repeat Plus Linker, And Tubulin
(2xrp) Docked Into An 8a Cryo-Em Map Of
Doublecortin-Stabilised Microtubules Reconstructed In
Absence Of Kinesin
pdb|4ATU|E Chain E, Human Doublecortin N-Dc Repeat Plus Linker, And Tubulin
(2xrp) Docked Into An 8a Cryo-Em Map Of
Doublecortin-Stabilised Microtubules Reconstructed In
Absence Of Kinesin
pdb|4ATU|G Chain G, Human Doublecortin N-Dc Repeat Plus Linker, And Tubulin
(2xrp) Docked Into An 8a Cryo-Em Map Of
Doublecortin-Stabilised Microtubules Reconstructed In
Absence Of Kinesin
pdb|4ATX|A Chain A, Rigor Kinesin Motor Domain With An Ordered Neck-Linker,
Docked On Tubulin Dimer, Modelled Into The 8a Cryo-Em
Map Of Doublecortin-Microtubules Decorated With Kinesin
pdb|4AQV|B Chain B, Model Of Human Kinesin-5 Motor Domain (3hqd) And Mammalian
Tubulin Heterodimer (1jff) Docked Into The 9.7-angstrom
Cryo-em Map Of Microtubule-bound Kinesin-5 Motor Domain
In The Ampppnp State.
pdb|4AQW|B Chain B, Model Of Human Kinesin-5 Motor Domain (1ii6, 3hqd) And
Mammalian Tubulin Heterodimer (1jff) Docked Into The
9.5- Angstrom Cryo-em Map Of Microtubule-bound Kinesin-5
Motor Domain In The Rigor State
Length = 445
Score = 192 bits (487), Expect = 5e-50, Method: Composition-based stats.
Identities = 84/89 (94%), Positives = 89/89 (100%)
Query: 1 FWEIISDEHGIDPTGAYHGDSDLQLERINVYYNEASGSKYVPRAILVDLEPGTMDAVRSG 60
FWE+ISDEHGIDPTG+YHGDSDLQLERINVYYNEA+G+KYVPRAILVDLEPGTMD+VRSG
Sbjct: 20 FWEVISDEHGIDPTGSYHGDSDLQLERINVYYNEAAGNKYVPRAILVDLEPGTMDSVRSG 79
Query: 61 PFGQIFRPDNFVFGQSGAGNNWAKGHYTE 89
PFGQIFRPDNFVFGQSGAGNNWAKGHYTE
Sbjct: 80 PFGQIFRPDNFVFGQSGAGNNWAKGHYTE 108
>pdb|3RYC|B Chain B, Tubulin: Rb3 Stathmin-Like Domain Complex
pdb|3RYC|D Chain D, Tubulin: Rb3 Stathmin-Like Domain Complex
pdb|3RYF|B Chain B, Gtp-Tubulin: Rb3 Stathmin-Like Domain Complex
pdb|3RYF|D Chain D, Gtp-Tubulin: Rb3 Stathmin-Like Domain Complex
pdb|3RYH|B Chain B, Gmpcpp-Tubulin: Rb3 Stathmin-Like Domain Complex
pdb|3RYH|D Chain D, Gmpcpp-Tubulin: Rb3 Stathmin-Like Domain Complex
pdb|3RYI|B Chain B, Gdp-Tubulin: Rb3 Stathmin-Like Domain Complex
pdb|3RYI|D Chain D, Gdp-Tubulin: Rb3 Stathmin-Like Domain Complex
pdb|4F6R|B Chain B, Tubulin:stathmin-Like Domain Complex
pdb|3UT5|B Chain B, Tubulin-colchicine-ustiloxin: Stathmin-like Domain Complex
pdb|3UT5|D Chain D, Tubulin-colchicine-ustiloxin: Stathmin-like Domain Complex
pdb|4EB6|B Chain B, Tubulin-vinblastine: Stathmin-like Complex
pdb|4EB6|D Chain D, Tubulin-vinblastine: Stathmin-like Complex
Length = 445
Score = 192 bits (487), Expect = 6e-50, Method: Composition-based stats.
Identities = 84/89 (94%), Positives = 89/89 (100%)
Query: 1 FWEIISDEHGIDPTGAYHGDSDLQLERINVYYNEASGSKYVPRAILVDLEPGTMDAVRSG 60
FWE+ISDEHGIDPTG+YHGDSDLQLERINVYYNEA+G+KYVPRAILVDLEPGTMD+VRSG
Sbjct: 20 FWEVISDEHGIDPTGSYHGDSDLQLERINVYYNEATGNKYVPRAILVDLEPGTMDSVRSG 79
Query: 61 PFGQIFRPDNFVFGQSGAGNNWAKGHYTE 89
PFGQIFRPDNFVFGQSGAGNNWAKGHYTE
Sbjct: 80 PFGQIFRPDNFVFGQSGAGNNWAKGHYTE 108
>pdb|3DU7|B Chain B, Tubulin-Colchicine-Phomopsin A: Stathmin-Like Domain
Complex
pdb|3DU7|D Chain D, Tubulin-Colchicine-Phomopsin A: Stathmin-Like Domain
Complex
pdb|3E22|B Chain B, Tubulin-Colchicine-Soblidotin: Stathmin-Like Domain
Complex
pdb|3E22|D Chain D, Tubulin-Colchicine-Soblidotin: Stathmin-Like Domain
Complex
pdb|3HKB|B Chain B, Tubulin: Rb3 Stathmin-Like Domain Complex
pdb|3HKB|D Chain D, Tubulin: Rb3 Stathmin-Like Domain Complex
pdb|3HKC|B Chain B, Tubulin-Abt751: Rb3 Stathmin-Like Domain Complex
pdb|3HKC|D Chain D, Tubulin-Abt751: Rb3 Stathmin-Like Domain Complex
pdb|3HKD|B Chain B, Tubulin-Tn16 : Rb3 Stathmin-Like Domain Complex
pdb|3HKD|D Chain D, Tubulin-Tn16 : Rb3 Stathmin-Like Domain Complex
pdb|3HKE|B Chain B, Tubulin-T138067: Rb3 Stathmin-Like Domain Complex
pdb|3HKE|D Chain D, Tubulin-T138067: Rb3 Stathmin-Like Domain Complex
pdb|3N2G|B Chain B, Tubulin-Nsc 613863: Rb3 Stathmin-Like Domain Complex
pdb|3N2G|D Chain D, Tubulin-Nsc 613863: Rb3 Stathmin-Like Domain Complex
pdb|3N2K|B Chain B, Tubulin-Nsc 613862: Rb3 Stathmin-Like Domain Complex
pdb|3N2K|D Chain D, Tubulin-Nsc 613862: Rb3 Stathmin-Like Domain Complex
Length = 445
Score = 192 bits (487), Expect = 6e-50, Method: Composition-based stats.
Identities = 84/89 (94%), Positives = 89/89 (100%)
Query: 1 FWEIISDEHGIDPTGAYHGDSDLQLERINVYYNEASGSKYVPRAILVDLEPGTMDAVRSG 60
FWE+ISDEHGIDPTG+YHGDSDLQLERINVYYNEA+G+KYVPRAILVDLEPGTMD+VRSG
Sbjct: 20 FWEVISDEHGIDPTGSYHGDSDLQLERINVYYNEATGNKYVPRAILVDLEPGTMDSVRSG 79
Query: 61 PFGQIFRPDNFVFGQSGAGNNWAKGHYTE 89
PFGQIFRPDNFVFGQSGAGNNWAKGHYTE
Sbjct: 80 PFGQIFRPDNFVFGQSGAGNNWAKGHYTE 108
>pdb|4F61|B Chain B, Tubulin:stathmin-Like Domain Complex
pdb|4F61|D Chain D, Tubulin:stathmin-Like Domain Complex
pdb|4F61|F Chain F, Tubulin:stathmin-Like Domain Complex
pdb|4F61|H Chain H, Tubulin:stathmin-Like Domain Complex
Length = 445
Score = 192 bits (487), Expect = 6e-50, Method: Composition-based stats.
Identities = 84/89 (94%), Positives = 89/89 (100%)
Query: 1 FWEIISDEHGIDPTGAYHGDSDLQLERINVYYNEASGSKYVPRAILVDLEPGTMDAVRSG 60
FWE+ISDEHGIDPTG+YHGDSDLQLERINVYYNEA+G+KYVPRAILVDLEPGTMD+VRSG
Sbjct: 20 FWEVISDEHGIDPTGSYHGDSDLQLERINVYYNEATGNKYVPRAILVDLEPGTMDSVRSG 79
Query: 61 PFGQIFRPDNFVFGQSGAGNNWAKGHYTE 89
PFGQIFRPDNFVFGQSGAGNNWAKGHYTE
Sbjct: 80 PFGQIFRPDNFVFGQSGAGNNWAKGHYTE 108
>pdb|1TUB|B Chain B, Tubulin Alpha-Beta Dimer, Electron Diffraction
pdb|1TVK|B Chain B, The Binding Mode Of Epothilone A On A,B-Tubulin By
Electron Crystallography
pdb|3J1T|C Chain C, High Affinity Dynein Microtubule Binding Domain - Tubulin
Complex
pdb|3J1U|C Chain C, Low Affinity Dynein Microtubule Binding Domain - Tubulin
Complex
Length = 427
Score = 191 bits (486), Expect = 6e-50, Method: Composition-based stats.
Identities = 84/89 (94%), Positives = 89/89 (100%)
Query: 1 FWEIISDEHGIDPTGAYHGDSDLQLERINVYYNEASGSKYVPRAILVDLEPGTMDAVRSG 60
FWE+ISDEHGIDPTG+YHGDSDLQLERINVYYNEA+G+KYVPRAILVDLEPGTMD+VRSG
Sbjct: 20 FWEVISDEHGIDPTGSYHGDSDLQLERINVYYNEAAGNKYVPRAILVDLEPGTMDSVRSG 79
Query: 61 PFGQIFRPDNFVFGQSGAGNNWAKGHYTE 89
PFGQIFRPDNFVFGQSGAGNNWAKGHYTE
Sbjct: 80 PFGQIFRPDNFVFGQSGAGNNWAKGHYTE 108
>pdb|1Z2B|B Chain B, Tubulin-Colchicine-Vinblastine: Stathmin-Like Domain
Complex
pdb|1Z2B|D Chain D, Tubulin-Colchicine-Vinblastine: Stathmin-Like Domain
Complex
Length = 445
Score = 191 bits (486), Expect = 6e-50, Method: Composition-based stats.
Identities = 84/89 (94%), Positives = 89/89 (100%)
Query: 1 FWEIISDEHGIDPTGAYHGDSDLQLERINVYYNEASGSKYVPRAILVDLEPGTMDAVRSG 60
FWE+ISDEHGIDPTG+YHGDSDLQLERINVYYNEA+G+KYVPRAILVDLEPGTMD+VRSG
Sbjct: 20 FWEVISDEHGIDPTGSYHGDSDLQLERINVYYNEATGNKYVPRAILVDLEPGTMDSVRSG 79
Query: 61 PFGQIFRPDNFVFGQSGAGNNWAKGHYTE 89
PFGQIFRPDNFVFGQSGAGNNWAKGHYTE
Sbjct: 80 PFGQIFRPDNFVFGQSGAGNNWAKGHYTE 108
>pdb|4DRX|B Chain B, Gtp-Tubulin In Complex With A Darpin
pdb|4DRX|D Chain D, Gtp-Tubulin In Complex With A Darpin
Length = 431
Score = 187 bits (476), Expect = 9e-49, Method: Compositional matrix adjust.
Identities = 85/93 (91%), Positives = 90/93 (96%)
Query: 1 FWEIISDEHGIDPTGAYHGDSDLQLERINVYYNEASGSKYVPRAILVDLEPGTMDAVRSG 60
FWE+ISDEHGIDPTG+YHGDSDLQLERINVYYNEA+G+KYVPRAILVDLEPGTMD+VRSG
Sbjct: 20 FWEVISDEHGIDPTGSYHGDSDLQLERINVYYNEATGNKYVPRAILVDLEPGTMDSVRSG 79
Query: 61 PFGQIFRPDNFVFGQSGAGNNWAKGHYTEPIPL 93
PFGQIFRPDNFVFGQSGAGNNWAKGHYTE L
Sbjct: 80 PFGQIFRPDNFVFGQSGAGNNWAKGHYTEGAEL 112
>pdb|4FFB|B Chain B, A Tog:alphaBETA-Tubulin Complex Structure Reveals
Conformation-Based Mechanisms For A Microtubule
Polymerase
Length = 463
Score = 137 bits (345), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 61/93 (65%), Positives = 72/93 (77%)
Query: 1 FWEIISDEHGIDPTGAYHGDSDLQLERINVYYNEASGSKYVPRAILVDLEPGTMDAVRSG 60
FWE I EHG+D G YHG D+Q ER+NVY+NEAS K+VPR+I VDLEPGT+DAVR+
Sbjct: 20 FWETICGEHGLDFNGTYHGHDDIQKERLNVYFNEASSGKWVPRSINVDLEPGTIDAVRNS 79
Query: 61 PFGQIFRPDNFVFGQSGAGNNWAKGHYTEPIPL 93
G +FRPDN++FGQS AGN WAKGHYTE L
Sbjct: 80 AIGNLFRPDNYIFGQSSAGNVWAKGHYTEGAEL 112
>pdb|4I4T|A Chain A, Crystal Structure Of Tubulin-rb3-ttl-zampanolide Complex
pdb|4I4T|C Chain C, Crystal Structure Of Tubulin-rb3-ttl-zampanolide Complex
pdb|4I55|A Chain A, Crystal Structure Of Tubulin-stathmin-ttl Complex
pdb|4I55|C Chain C, Crystal Structure Of Tubulin-stathmin-ttl Complex
pdb|4IHJ|A Chain A, Crystal Structure Of Tubulin-stathmin-ttl-adp Complex
pdb|4IHJ|C Chain C, Crystal Structure Of Tubulin-stathmin-ttl-adp Complex
Length = 450
Score = 85.9 bits (211), Expect = 6e-18, Method: Composition-based stats.
Identities = 37/89 (41%), Positives = 54/89 (60%), Gaps = 2/89 (2%)
Query: 2 WEIISDEHGIDPTGAYHGDSDLQ--LERINVYYNEASGSKYVPRAILVDLEPGTMDAVRS 59
WE+ EHGI P G D + + N +++E K+VPRA+ VDLEP +D VR+
Sbjct: 21 WELYCLEHGIQPDGQMPSDKTIGGGDDSFNTFFSETGAGKHVPRAVFVDLEPTVIDEVRT 80
Query: 60 GPFGQIFRPDNFVFGQSGAGNNWAKGHYT 88
G + Q+F P+ + G+ A NN+A+GHYT
Sbjct: 81 GTYRQLFHPEQLITGKEDAANNYARGHYT 109
>pdb|4DRX|A Chain A, Gtp-Tubulin In Complex With A Darpin
pdb|4DRX|C Chain C, Gtp-Tubulin In Complex With A Darpin
Length = 437
Score = 85.9 bits (211), Expect = 6e-18, Method: Composition-based stats.
Identities = 37/89 (41%), Positives = 54/89 (60%), Gaps = 2/89 (2%)
Query: 2 WEIISDEHGIDPTGAYHGDSDLQ--LERINVYYNEASGSKYVPRAILVDLEPGTMDAVRS 59
WE+ EHGI P G D + + N +++E K+VPRA+ VDLEP +D VR+
Sbjct: 21 WELYCLEHGIQPDGQMPSDKTIGGGDDSFNTFFSETGAGKHVPRAVFVDLEPTVIDEVRT 80
Query: 60 GPFGQIFRPDNFVFGQSGAGNNWAKGHYT 88
G + Q+F P+ + G+ A NN+A+GHYT
Sbjct: 81 GTYRQLFHPEQLITGKEDAANNYARGHYT 109
>pdb|3HKB|A Chain A, Tubulin: Rb3 Stathmin-Like Domain Complex
pdb|3HKB|C Chain C, Tubulin: Rb3 Stathmin-Like Domain Complex
pdb|3HKC|A Chain A, Tubulin-Abt751: Rb3 Stathmin-Like Domain Complex
pdb|3HKC|C Chain C, Tubulin-Abt751: Rb3 Stathmin-Like Domain Complex
pdb|3HKD|A Chain A, Tubulin-Tn16 : Rb3 Stathmin-Like Domain Complex
pdb|3HKD|C Chain C, Tubulin-Tn16 : Rb3 Stathmin-Like Domain Complex
pdb|3HKE|A Chain A, Tubulin-T138067: Rb3 Stathmin-Like Domain Complex
pdb|3HKE|C Chain C, Tubulin-T138067: Rb3 Stathmin-Like Domain Complex
pdb|3N2G|A Chain A, Tubulin-Nsc 613863: Rb3 Stathmin-Like Domain Complex
pdb|3N2G|C Chain C, Tubulin-Nsc 613863: Rb3 Stathmin-Like Domain Complex
pdb|3N2K|A Chain A, Tubulin-Nsc 613862: Rb3 Stathmin-Like Domain Complex
pdb|3N2K|C Chain C, Tubulin-Nsc 613862: Rb3 Stathmin-Like Domain Complex
Length = 451
Score = 85.5 bits (210), Expect = 6e-18, Method: Composition-based stats.
Identities = 37/89 (41%), Positives = 54/89 (60%), Gaps = 2/89 (2%)
Query: 2 WEIISDEHGIDPTGAYHGDSDLQ--LERINVYYNEASGSKYVPRAILVDLEPGTMDAVRS 59
WE+ EHGI P G D + + N +++E K+VPRA+ VDLEP +D VR+
Sbjct: 21 WELYCLEHGIQPDGQMPSDKTIGGGDDSFNTFFSETGAGKHVPRAVFVDLEPTVIDEVRT 80
Query: 60 GPFGQIFRPDNFVFGQSGAGNNWAKGHYT 88
G + Q+F P+ + G+ A NN+A+GHYT
Sbjct: 81 GTYRQLFHPEQLITGKEDAANNYARGHYT 109
>pdb|3RYC|A Chain A, Tubulin: Rb3 Stathmin-Like Domain Complex
pdb|3RYC|C Chain C, Tubulin: Rb3 Stathmin-Like Domain Complex
pdb|3RYF|A Chain A, Gtp-Tubulin: Rb3 Stathmin-Like Domain Complex
pdb|3RYF|C Chain C, Gtp-Tubulin: Rb3 Stathmin-Like Domain Complex
pdb|3RYH|A Chain A, Gmpcpp-Tubulin: Rb3 Stathmin-Like Domain Complex
pdb|3RYH|C Chain C, Gmpcpp-Tubulin: Rb3 Stathmin-Like Domain Complex
pdb|3RYI|A Chain A, Gdp-Tubulin: Rb3 Stathmin-Like Domain Complex
pdb|3RYI|C Chain C, Gdp-Tubulin: Rb3 Stathmin-Like Domain Complex
pdb|4F61|A Chain A, Tubulin:stathmin-Like Domain Complex
pdb|4F61|C Chain C, Tubulin:stathmin-Like Domain Complex
pdb|4F61|E Chain E, Tubulin:stathmin-Like Domain Complex
pdb|4F61|G Chain G, Tubulin:stathmin-Like Domain Complex
pdb|4F6R|A Chain A, Tubulin:stathmin-Like Domain Complex
pdb|3UT5|A Chain A, Tubulin-colchicine-ustiloxin: Stathmin-like Domain Complex
pdb|3UT5|C Chain C, Tubulin-colchicine-ustiloxin: Stathmin-like Domain Complex
pdb|4EB6|A Chain A, Tubulin-vinblastine: Stathmin-like Complex
pdb|4EB6|C Chain C, Tubulin-vinblastine: Stathmin-like Complex
pdb|4I50|A Chain A, Crystal Structure Of Tubulin-stathmin-ttl-epothilone A
Complex
pdb|4I50|C Chain C, Crystal Structure Of Tubulin-stathmin-ttl-epothilone A
Complex
pdb|4IIJ|A Chain A, Crystal Structure Of Tubulin-stathmin-ttl-apo Complex
pdb|4IIJ|C Chain C, Crystal Structure Of Tubulin-stathmin-ttl-apo Complex
Length = 451
Score = 85.5 bits (210), Expect = 6e-18, Method: Composition-based stats.
Identities = 37/89 (41%), Positives = 54/89 (60%), Gaps = 2/89 (2%)
Query: 2 WEIISDEHGIDPTGAYHGDSDLQ--LERINVYYNEASGSKYVPRAILVDLEPGTMDAVRS 59
WE+ EHGI P G D + + N +++E K+VPRA+ VDLEP +D VR+
Sbjct: 21 WELYCLEHGIQPDGQMPSDKTIGGGDDSFNTFFSETGAGKHVPRAVFVDLEPTVIDEVRT 80
Query: 60 GPFGQIFRPDNFVFGQSGAGNNWAKGHYT 88
G + Q+F P+ + G+ A NN+A+GHYT
Sbjct: 81 GTYRQLFHPEQLITGKEDAANNYARGHYT 109
>pdb|3DU7|A Chain A, Tubulin-Colchicine-Phomopsin A: Stathmin-Like Domain
Complex
pdb|3DU7|C Chain C, Tubulin-Colchicine-Phomopsin A: Stathmin-Like Domain
Complex
pdb|3E22|A Chain A, Tubulin-Colchicine-Soblidotin: Stathmin-Like Domain
Complex
pdb|3E22|C Chain C, Tubulin-Colchicine-Soblidotin: Stathmin-Like Domain
Complex
Length = 449
Score = 85.5 bits (210), Expect = 7e-18, Method: Composition-based stats.
Identities = 37/89 (41%), Positives = 54/89 (60%), Gaps = 2/89 (2%)
Query: 2 WEIISDEHGIDPTGAYHGDSDLQ--LERINVYYNEASGSKYVPRAILVDLEPGTMDAVRS 59
WE+ EHGI P G D + + N +++E K+VPRA+ VDLEP +D VR+
Sbjct: 21 WELYCLEHGIQPDGQMPSDKTIGGGDDSFNTFFSETGAGKHVPRAVFVDLEPTVIDEVRT 80
Query: 60 GPFGQIFRPDNFVFGQSGAGNNWAKGHYT 88
G + Q+F P+ + G+ A NN+A+GHYT
Sbjct: 81 GTYRQLFHPEQLISGKEDAANNYARGHYT 109
>pdb|1SA0|A Chain A, Tubulin-Colchicine: Stathmin-Like Domain Complex
pdb|1SA0|C Chain C, Tubulin-Colchicine: Stathmin-Like Domain Complex
pdb|1SA1|A Chain A, Tubulin-Podophyllotoxin: Stathmin-Like Domain Complex
pdb|1SA1|C Chain C, Tubulin-Podophyllotoxin: Stathmin-Like Domain Complex
pdb|3EDL|F Chain F, Kinesin13-Microtubule Ring Complex
Length = 451
Score = 85.5 bits (210), Expect = 7e-18, Method: Composition-based stats.
Identities = 37/89 (41%), Positives = 54/89 (60%), Gaps = 2/89 (2%)
Query: 2 WEIISDEHGIDPTGAYHGDSDLQ--LERINVYYNEASGSKYVPRAILVDLEPGTMDAVRS 59
WE+ EHGI P G D + + N +++E K+VPRA+ VDLEP +D VR+
Sbjct: 21 WELYCLEHGIQPDGQMPSDKTIGGGDDSFNTFFSETGAGKHVPRAVFVDLEPTVIDEVRT 80
Query: 60 GPFGQIFRPDNFVFGQSGAGNNWAKGHYT 88
G + Q+F P+ + G+ A NN+A+GHYT
Sbjct: 81 GTYRQLFHPEQLITGKEDAANNYARGHYT 109
>pdb|1FFX|A Chain A, Tubulin:stathmin-Like Domain Complex
pdb|1FFX|C Chain C, Tubulin:stathmin-Like Domain Complex
pdb|1IA0|A Chain A, Kif1a Head-Microtubule Complex Structure In Atp-Form
pdb|2HXF|A Chain A, Kif1a Head-Microtubule Complex Structure In Amppnp-Form
pdb|2HXH|A Chain A, Kif1a Head-Microtubule Complex Structure In Adp-Form
pdb|2P4N|A Chain A, Human Monomeric Kinesin (1bg2) And Bovine Tubulin (1jff)
Docked Into The 9-Angstrom Cryo-Em Map Of
Nucleotide-Free Kinesin Complexed To The Microtubule
Length = 451
Score = 85.5 bits (210), Expect = 7e-18, Method: Composition-based stats.
Identities = 37/89 (41%), Positives = 54/89 (60%), Gaps = 2/89 (2%)
Query: 2 WEIISDEHGIDPTGAYHGDSDLQ--LERINVYYNEASGSKYVPRAILVDLEPGTMDAVRS 59
WE+ EHGI P G D + + N +++E K+VPRA+ VDLEP +D VR+
Sbjct: 21 WELYCLEHGIQPDGQMPSDKTIGGGDDSFNTFFSETGAGKHVPRAVFVDLEPTVIDEVRT 80
Query: 60 GPFGQIFRPDNFVFGQSGAGNNWAKGHYT 88
G + Q+F P+ + G+ A NN+A+GHYT
Sbjct: 81 GTYRQLFHPEQLITGKEDAANNYARGHYT 109
>pdb|1TUB|A Chain A, Tubulin Alpha-Beta Dimer, Electron Diffraction
pdb|1TVK|A Chain A, The Binding Mode Of Epothilone A On A,B-Tubulin By
Electron Crystallography
Length = 440
Score = 85.5 bits (210), Expect = 7e-18, Method: Composition-based stats.
Identities = 37/89 (41%), Positives = 54/89 (60%), Gaps = 2/89 (2%)
Query: 2 WEIISDEHGIDPTGAYHGDSDLQ--LERINVYYNEASGSKYVPRAILVDLEPGTMDAVRS 59
WE+ EHGI P G D + + N +++E K+VPRA+ VDLEP +D VR+
Sbjct: 21 WELYCLEHGIQPDGQMPSDKTIGGGDDSFNTFFSETGAGKHVPRAVFVDLEPTVIDEVRT 80
Query: 60 GPFGQIFRPDNFVFGQSGAGNNWAKGHYT 88
G + Q+F P+ + G+ A NN+A+GHYT
Sbjct: 81 GTYRQLFHPEQLITGKEDAANNYARGHYT 109
>pdb|2XRP|B Chain B, Human Doublecortin N-Dc Repeat (1mjd) And Mammalian
Tubulin (1jff And 3hke) Docked Into The 8-Angstrom
Cryo-Em Map Of Doublecortin-Stabilised Microtubules
pdb|2XRP|D Chain D, Human Doublecortin N-Dc Repeat (1mjd) And Mammalian
Tubulin (1jff And 3hke) Docked Into The 8-Angstrom
Cryo-Em Map Of Doublecortin-Stabilised Microtubules
pdb|2XRP|F Chain F, Human Doublecortin N-Dc Repeat (1mjd) And Mammalian
Tubulin (1jff And 3hke) Docked Into The 8-Angstrom
Cryo-Em Map Of Doublecortin-Stabilised Microtubules
pdb|2XRP|H Chain H, Human Doublecortin N-Dc Repeat (1mjd) And Mammalian
Tubulin (1jff And 3hke) Docked Into The 8-Angstrom
Cryo-Em Map Of Doublecortin-Stabilised Microtubules
pdb|4ATU|B Chain B, Human Doublecortin N-Dc Repeat Plus Linker, And Tubulin
(2xrp) Docked Into An 8a Cryo-Em Map Of
Doublecortin-Stabilised Microtubules Reconstructed In
Absence Of Kinesin
pdb|4ATU|D Chain D, Human Doublecortin N-Dc Repeat Plus Linker, And Tubulin
(2xrp) Docked Into An 8a Cryo-Em Map Of
Doublecortin-Stabilised Microtubules Reconstructed In
Absence Of Kinesin
pdb|4ATU|F Chain F, Human Doublecortin N-Dc Repeat Plus Linker, And Tubulin
(2xrp) Docked Into An 8a Cryo-Em Map Of
Doublecortin-Stabilised Microtubules Reconstructed In
Absence Of Kinesin
pdb|4ATU|H Chain H, Human Doublecortin N-Dc Repeat Plus Linker, And Tubulin
(2xrp) Docked Into An 8a Cryo-Em Map Of
Doublecortin-Stabilised Microtubules Reconstructed In
Absence Of Kinesin
pdb|4ATX|B Chain B, Rigor Kinesin Motor Domain With An Ordered Neck-Linker,
Docked On Tubulin Dimer, Modelled Into The 8a Cryo-Em
Map Of Doublecortin-Microtubules Decorated With Kinesin
pdb|4AQV|A Chain A, Model Of Human Kinesin-5 Motor Domain (3hqd) And Mammalian
Tubulin Heterodimer (1jff) Docked Into The 9.7-angstrom
Cryo-em Map Of Microtubule-bound Kinesin-5 Motor Domain
In The Ampppnp State.
pdb|4AQW|A Chain A, Model Of Human Kinesin-5 Motor Domain (1ii6, 3hqd) And
Mammalian Tubulin Heterodimer (1jff) Docked Into The
9.5- Angstrom Cryo-em Map Of Microtubule-bound Kinesin-5
Motor Domain In The Rigor State
Length = 452
Score = 85.5 bits (210), Expect = 7e-18, Method: Composition-based stats.
Identities = 37/89 (41%), Positives = 54/89 (60%), Gaps = 2/89 (2%)
Query: 2 WEIISDEHGIDPTGAYHGDSDLQ--LERINVYYNEASGSKYVPRAILVDLEPGTMDAVRS 59
WE+ EHGI P G D + + N +++E K+VPRA+ VDLEP +D VR+
Sbjct: 21 WELYCLEHGIQPDGQMPSDKTIGGGDDSFNTFFSETGAGKHVPRAVFVDLEPTVIDEVRT 80
Query: 60 GPFGQIFRPDNFVFGQSGAGNNWAKGHYT 88
G + Q+F P+ + G+ A NN+A+GHYT
Sbjct: 81 GTYRQLFHPEQLITGKEDAANNYARGHYT 109
>pdb|1JFF|A Chain A, Refined Structure Of Alpha-Beta Tubulin From Zinc-Induced
Sheets Stabilized With Taxol
pdb|3EDL|A Chain A, Kinesin13-Microtubule Ring Complex
pdb|3DCO|A Chain A, Drosophila Nod (3dc4) And Bovine Tubulin (1jff) Docked
Into The 11-Angstrom Cryo-Em Map Of Nucleotide-Free Nod
Complexed To The Microtubule
pdb|2WBE|A Chain A, Kinesin-5-Tubulin Complex With Amppnp
pdb|3IZ0|A Chain A, Human Ndc80 Bonsai Decorated Microtubule
pdb|4ABO|B Chain B, Mal3 Ch Domain Homology Model And Mammalian Tubulin (2xrp)
Docked Into The 8.6-Angstrom Cryo-Em Map Of
Mal3-Gtpgammas-Microtubules
pdb|4ABO|D Chain D, Mal3 Ch Domain Homology Model And Mammalian Tubulin (2xrp)
Docked Into The 8.6-Angstrom Cryo-Em Map Of
Mal3-Gtpgammas-Microtubules
pdb|4ABO|F Chain F, Mal3 Ch Domain Homology Model And Mammalian Tubulin (2xrp)
Docked Into The 8.6-Angstrom Cryo-Em Map Of
Mal3-Gtpgammas-Microtubules
pdb|4ABO|H Chain H, Mal3 Ch Domain Homology Model And Mammalian Tubulin (2xrp)
Docked Into The 8.6-Angstrom Cryo-Em Map Of
Mal3-Gtpgammas-Microtubules
pdb|3J1T|B Chain B, High Affinity Dynein Microtubule Binding Domain - Tubulin
Complex
pdb|3J1U|B Chain B, Low Affinity Dynein Microtubule Binding Domain - Tubulin
Complex
Length = 451
Score = 85.5 bits (210), Expect = 7e-18, Method: Composition-based stats.
Identities = 37/89 (41%), Positives = 54/89 (60%), Gaps = 2/89 (2%)
Query: 2 WEIISDEHGIDPTGAYHGDSDLQ--LERINVYYNEASGSKYVPRAILVDLEPGTMDAVRS 59
WE+ EHGI P G D + + N +++E K+VPRA+ VDLEP +D VR+
Sbjct: 21 WELYCLEHGIQPDGQMPSDKTIGGGDDSFNTFFSETGAGKHVPRAVFVDLEPTVIDEVRT 80
Query: 60 GPFGQIFRPDNFVFGQSGAGNNWAKGHYT 88
G + Q+F P+ + G+ A NN+A+GHYT
Sbjct: 81 GTYRQLFHPEQLITGKEDAANNYARGHYT 109
>pdb|1Z2B|A Chain A, Tubulin-Colchicine-Vinblastine: Stathmin-Like Domain
Complex
pdb|1Z2B|C Chain C, Tubulin-Colchicine-Vinblastine: Stathmin-Like Domain
Complex
Length = 448
Score = 85.1 bits (209), Expect = 8e-18, Method: Composition-based stats.
Identities = 37/89 (41%), Positives = 54/89 (60%), Gaps = 2/89 (2%)
Query: 2 WEIISDEHGIDPTGAYHGDSDLQL--ERINVYYNEASGSKYVPRAILVDLEPGTMDAVRS 59
WE+ EHGI P G D + + N +++E K+VPRA+ VDLEP +D VR+
Sbjct: 21 WELYCLEHGIQPDGQMPSDKTIGGGDDSFNTFFSETGAGKHVPRAVFVDLEPTVIDEVRT 80
Query: 60 GPFGQIFRPDNFVFGQSGAGNNWAKGHYT 88
G + Q+F P+ + G+ A NN+A+GHYT
Sbjct: 81 GTYRQLFHPEQLITGKEDAANNYARGHYT 109
>pdb|4FFB|A Chain A, A Tog:alphaBETA-Tubulin Complex Structure Reveals
Conformation-Based Mechanisms For A Microtubule
Polymerase
Length = 447
Score = 80.5 bits (197), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 40/92 (43%), Positives = 56/92 (60%), Gaps = 7/92 (7%)
Query: 2 WEIISDEHGIDPTGAYHGDSDLQL-----ERINVYYNEASGSKYVPRAILVDLEPGTMDA 56
WE+ S EHGI P G H + L E + +++E K+VPRAI VDLEP +D
Sbjct: 21 WELYSLEHGIKPDG--HLEDGLSKPKGGEEGFSTFFHETGYGKFVPRAIYVDLEPNVIDE 78
Query: 57 VRSGPFGQIFRPDNFVFGQSGAGNNWAKGHYT 88
VR+GP+ +F P+ + G+ A NN+A+GHYT
Sbjct: 79 VRNGPYKDLFHPEQLISGKEDAANNYARGHYT 110
>pdb|3CB2|A Chain A, Crystal Structure Of Human Gamma-Tubulin Bound To Gdp
pdb|3CB2|B Chain B, Crystal Structure Of Human Gamma-Tubulin Bound To Gdp
Length = 475
Score = 69.7 bits (169), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 30/87 (34%), Positives = 51/87 (58%), Gaps = 2/87 (2%)
Query: 1 FWEIISDEHGIDPTGAYHGDSDLQLERINVYYNEASGSKYVPRAILVDLEPGTMDAVRSG 60
FW+ + EHGI P + +R +V++ +A Y+PRA+L+DLEP + ++ +
Sbjct: 21 FWKQLCAEHGISPEAIVEEFATEGTDRKDVFFYQADDEHYIPRAVLLDLEPRVIHSILNS 80
Query: 61 PFGQIFRPDNFVFGQS--GAGNNWAKG 85
P+ +++ P+N + GAGNNWA G
Sbjct: 81 PYAKLYNPENIYLSEHGGGAGNNWASG 107
>pdb|1Z5V|A Chain A, Crystal Structure Of Human Gamma-Tubulin Bound To
Gtpgammas
pdb|1Z5W|A Chain A, Crystal Structure Of Gamma-Tubulin Bound To Gtp
Length = 474
Score = 69.7 bits (169), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 30/87 (34%), Positives = 51/87 (58%), Gaps = 2/87 (2%)
Query: 1 FWEIISDEHGIDPTGAYHGDSDLQLERINVYYNEASGSKYVPRAILVDLEPGTMDAVRSG 60
FW+ + EHGI P + +R +V++ +A Y+PRA+L+DLEP + ++ +
Sbjct: 21 FWKQLCAEHGISPEAIVEEFATEGTDRKDVFFYQADDEHYIPRAVLLDLEPRVIHSILNS 80
Query: 61 PFGQIFRPDNFVFGQS--GAGNNWAKG 85
P+ +++ P+N + GAGNNWA G
Sbjct: 81 PYAKLYNPENIYLSEHGGGAGNNWASG 107
>pdb|2BTQ|B Chain B, Structure Of Btubab Heterodimer From Prosthecobacter
Dejongeii
Length = 426
Score = 68.9 bits (167), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 33/90 (36%), Positives = 48/90 (53%), Gaps = 1/90 (1%)
Query: 1 FWEIISDEHGIDPTGAY-HGDSDLQLERINVYYNEASGSKYVPRAILVDLEPGTMDAVRS 59
FW + EHG+ G G + + V++++ KYVPRA+LVDLEPG + +
Sbjct: 20 FWRLALREHGLTEAGTLKEGSNAAANSNMEVFFHKVRDGKYVPRAVLVDLEPGVIARIEG 79
Query: 60 GPFGQIFRPDNFVFGQSGAGNNWAKGHYTE 89
G Q+F + V GA NNWA+G+ E
Sbjct: 80 GDMSQLFDESSIVRKIPGAANNWARGYNVE 109
>pdb|2BTO|A Chain A, Structure Of Btuba From Prosthecobacter Dejongeii
pdb|2BTO|B Chain B, Structure Of Btuba From Prosthecobacter Dejongeii
pdb|2BTQ|A Chain A, Structure Of Btubab Heterodimer From Prosthecobacter
Dejongeii
Length = 473
Score = 62.0 bits (149), Expect = 8e-11, Method: Composition-based stats.
Identities = 33/89 (37%), Positives = 48/89 (53%), Gaps = 4/89 (4%)
Query: 1 FWEIISDEHGIDPTGAYHGDSDLQLERINVYYN---EASGSKYVPRAILVDLEPGTMDAV 57
FW+ + EHGIDP + +++ E+S YVPRAI+VDLEP +D V
Sbjct: 22 FWKTVCLEHGIDPLTGQTAPGVAPRGNWSSFFSKLGESSSGSYVPRAIMVDLEPSVIDNV 81
Query: 58 RSGPFGQIFRPDNFVFGQSGAGNNWAKGH 86
++ G +F P N + GAG N+A G+
Sbjct: 82 KATS-GSLFNPANLISRTEGAGGNFAVGY 109
>pdb|2VVG|A Chain A, Crystal Structure Of The G.Intestinalis Kinesin 2 Gikin2a
Motor Domain
pdb|2VVG|B Chain B, Crystal Structure Of The G.Intestinalis Kinesin 2 Gikin2a
Motor Domain
Length = 350
Score = 28.9 bits (63), Expect = 0.75, Method: Composition-based stats.
Identities = 16/42 (38%), Positives = 21/42 (50%), Gaps = 6/42 (14%)
Query: 54 MDAVRSGPFGQIFRPDNFVFGQSGAGNNWAK-GHYTEPIPLP 94
+DAV G F F +GQ+GAG W G+ EP +P
Sbjct: 82 IDAVLEG-----FNSTIFAYGQTGAGKTWTMGGNKEEPGAIP 118
>pdb|4EWG|A Chain A, Crystal Structure Of A Beta-Ketoacyl Synthase From
Burkholderia Phymatum Stm815
pdb|4EWG|B Chain B, Crystal Structure Of A Beta-Ketoacyl Synthase From
Burkholderia Phymatum Stm815
Length = 412
Score = 28.5 bits (62), Expect = 1.1, Method: Composition-based stats.
Identities = 17/51 (33%), Positives = 24/51 (47%)
Query: 15 GAYHGDSDLQLERINVYYNEASGSKYVPRAILVDLEPGTMDAVRSGPFGQI 65
+ GD + R+ V Y +SGS RA LE G+M V S + Q+
Sbjct: 92 AGFAGDESISDGRMGVAYGSSSGSVEPIRAFGTMLESGSMTDVTSNSYVQM 142
>pdb|4F92|B Chain B, Brr2 Helicase Region S1087l
pdb|4F93|B Chain B, Brr2 Helicase Region S1087l, Mg-Atp
Length = 1724
Score = 26.9 bits (58), Expect = 2.8, Method: Composition-based stats.
Identities = 13/35 (37%), Positives = 21/35 (60%), Gaps = 1/35 (2%)
Query: 39 KYVPRAILVDLEPGTMDAVRSGPFGQIFRPDNFVF 73
KY P L+DL+P + A+R+ F +++ D F F
Sbjct: 893 KYPPPTELLDLQPLPVSALRNSAFESLYQ-DKFPF 926
>pdb|4F91|B Chain B, Brr2 Helicase Region
Length = 1724
Score = 26.9 bits (58), Expect = 2.8, Method: Composition-based stats.
Identities = 13/35 (37%), Positives = 21/35 (60%), Gaps = 1/35 (2%)
Query: 39 KYVPRAILVDLEPGTMDAVRSGPFGQIFRPDNFVF 73
KY P L+DL+P + A+R+ F +++ D F F
Sbjct: 893 KYPPPTELLDLQPLPVSALRNSAFESLYQ-DKFPF 926
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.316 0.140 0.450
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,791,207
Number of Sequences: 62578
Number of extensions: 155466
Number of successful extensions: 280
Number of sequences better than 100.0: 31
Number of HSP's better than 100.0 without gapping: 28
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 236
Number of HSP's gapped (non-prelim): 31
length of query: 99
length of database: 14,973,337
effective HSP length: 65
effective length of query: 34
effective length of database: 10,905,767
effective search space: 370796078
effective search space used: 370796078
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 45 (21.9 bits)