Query psy14218
Match_columns 99
No_of_seqs 102 out of 1058
Neff 7.1
Searched_HMMs 46136
Date Fri Aug 16 22:26:09 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy14218.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/14218hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG5023 Tubulin [Cytoskeleton] 100.0 6.6E-39 1.4E-43 242.6 3.9 96 1-96 20-115 (443)
2 PTZ00335 tubulin alpha chain; 100.0 7.8E-30 1.7E-34 198.6 4.3 95 1-95 20-116 (448)
3 PLN00221 tubulin alpha chain; 100.0 7.1E-30 1.5E-34 199.0 2.9 95 1-95 20-116 (450)
4 KOG1374|consensus 100.0 1.4E-29 3.1E-34 192.2 3.9 94 1-95 21-116 (448)
5 PLN00220 tubulin beta chain; P 100.0 3.6E-29 7.8E-34 194.8 3.6 95 1-95 20-114 (447)
6 cd02188 gamma_tubulin Gamma-tu 99.9 2E-28 4.3E-33 190.0 2.3 94 1-95 19-114 (431)
7 KOG1376|consensus 99.9 3.7E-28 8.1E-33 183.6 3.0 95 1-96 20-116 (407)
8 cd02186 alpha_tubulin The tubu 99.9 3.6E-28 7.8E-33 188.7 3.0 95 1-95 19-115 (434)
9 PTZ00010 tubulin beta chain; P 99.9 6.6E-28 1.4E-32 187.7 4.0 95 1-95 20-114 (445)
10 PLN00222 tubulin gamma chain; 99.9 9.8E-28 2.1E-32 187.2 2.7 94 1-95 21-116 (454)
11 cd02187 beta_tubulin The tubul 99.9 5.5E-27 1.2E-31 181.6 4.6 95 1-95 19-113 (425)
12 cd02189 delta_tubulin The tubu 99.9 5.2E-27 1.1E-31 182.7 3.7 91 1-95 18-110 (446)
13 PTZ00387 epsilon tubulin; Prov 99.9 7.3E-27 1.6E-31 182.7 2.9 88 1-95 20-115 (465)
14 PF00091 Tubulin: Tubulin/FtsZ 99.8 9.8E-22 2.1E-26 140.1 -2.4 89 1-93 18-106 (216)
15 cd02190 epsilon_tubulin The tu 99.8 4.4E-20 9.6E-25 141.5 1.1 56 40-95 28-83 (379)
16 KOG1375|consensus 99.2 2.9E-12 6.3E-17 97.4 2.4 67 21-96 4-70 (369)
17 cd06059 Tubulin The tubulin su 99.2 2.8E-12 6E-17 98.3 0.8 51 45-95 23-73 (382)
18 smart00864 Tubulin Tubulin/Fts 99.1 9E-12 2E-16 87.5 -2.4 56 30-88 3-58 (192)
19 cd00286 Tubulin_FtsZ Tubulin/F 98.7 3E-09 6.5E-14 79.9 0.1 50 45-94 23-72 (328)
20 cd02202 FtsZ_type2 FtsZ is a G 96.3 0.0015 3.3E-08 50.0 1.1 43 39-86 29-76 (349)
21 PF10644 Misat_Tub_SegII: Misa 86.1 0.54 1.2E-05 30.5 1.8 25 27-51 39-67 (115)
22 cd06060 misato Human Misato sh 76.0 3.1 6.7E-05 33.6 3.1 80 1-86 19-123 (493)
23 PF02044 Bombesin: Bombesin-li 51.7 4.4 9.6E-05 16.9 -0.1 12 79-91 1-12 (14)
24 COG2077 Tpx Peroxiredoxin [Pos 50.7 16 0.00035 25.3 2.4 50 3-52 91-141 (158)
25 cd02191 FtsZ FtsZ is a GTPase 39.7 13 0.00028 28.0 0.7 37 42-86 27-68 (303)
26 cd02960 AGR Anterior Gradient 37.2 36 0.00079 22.6 2.5 23 37-59 76-98 (130)
27 KOG1765|consensus 30.8 39 0.00085 23.8 1.9 13 2-14 95-107 (181)
28 cd02201 FtsZ_type1 FtsZ is a G 30.7 23 0.0005 26.4 0.8 43 42-87 27-69 (304)
29 KOG2716|consensus 30.4 9.8 0.00021 27.9 -1.2 45 12-56 10-59 (230)
30 PF02037 SAP: SAP domain; Int 28.8 47 0.001 16.8 1.5 14 3-16 10-23 (35)
31 PF13156 Mrr_cat_2: Restrictio 27.4 25 0.00055 23.5 0.5 29 22-51 57-85 (129)
No 1
>COG5023 Tubulin [Cytoskeleton]
Probab=100.00 E-value=6.6e-39 Score=242.59 Aligned_cols=96 Identities=54% Similarity=1.022 Sum_probs=93.3
Q ss_pred CHHHHHhHhCCCCCCCccCCCchhhccccceeeecCCCceeceEEEecCCCCcccccccCCCCccccCCceeeccCCCCc
Q psy14218 1 FWEIISDEHGIDPTGAYHGDSDLQLERINVYYNEASGSKYVPRAILVDLEPGTMDAVRSGPFGQIFRPDNFVFGQSGAGN 80 (99)
Q Consensus 1 fWe~~~~EH~i~~~g~~~~~~~~~~~~~~~fF~e~~~~~~~pRav~iD~ep~~i~~i~~~~~~~lf~~~~~i~~~~gagn 80 (99)
|||+||+||||+++|.+.+.++.+.+++++||+|++.|+|+||||+|||||.||++|+++++++||+|+|+|++|+||||
T Consensus 20 fWe~~c~EHGI~~~G~~~~~~~~~~er~~vfF~e~~~~k~vPRaI~vDLEP~vid~v~~g~y~~lf~Pen~i~gkegAgN 99 (443)
T COG5023 20 FWETLCLEHGIGPDGTLLDSSDEGDERFDVFFYEASDGKFVPRAILVDLEPGVIDQVRNGPYGSLFHPENIIFGKEGAGN 99 (443)
T ss_pred HHHHHHHhhCcCCCCCCCCCcccccccccceeeecCCCccccceEEEecCcchHhhhccCccccccChhheeeccccccc
Confidence 89999999999999999988888899999999999999999999999999999999999999999999999999999999
Q ss_pred ccccccCCCCCCCCCC
Q psy14218 81 NWAKGHYTEPIPLPVP 96 (99)
Q Consensus 81 NwA~Gyy~~g~~~~~~ 96 (99)
|||+|||++|++++|.
T Consensus 100 nwA~GhYtvG~e~~dd 115 (443)
T COG5023 100 NWARGHYTVGKEIIDD 115 (443)
T ss_pred cccccccchhHHHHHH
Confidence 9999999999999864
No 2
>PTZ00335 tubulin alpha chain; Provisional
Probab=99.96 E-value=7.8e-30 Score=198.64 Aligned_cols=95 Identities=37% Similarity=0.771 Sum_probs=86.3
Q ss_pred CHHHHHhHhCCCCCCCccCCCc--hhhccccceeeecCCCceeceEEEecCCCCcccccccCCCCccccCCceeeccCCC
Q psy14218 1 FWEIISDEHGIDPTGAYHGDSD--LQLERINVYYNEASGSKYVPRAILVDLEPGTMDAVRSGPFGQIFRPDNFVFGQSGA 78 (99)
Q Consensus 1 fWe~~~~EH~i~~~g~~~~~~~--~~~~~~~~fF~e~~~~~~~pRav~iD~ep~~i~~i~~~~~~~lf~~~~~i~~~~ga 78 (99)
||+++|+||+|+++|.+..... .+.+++++||+|+.+++|+|||||||+||++|++|+.++++++|++++++++++||
T Consensus 20 fW~~~~~Eh~i~~~g~~~~~~~~~~~~~~~~~fF~e~~~~~~~pRav~iD~e~~~i~~i~~~~~~~l~~~~~~i~~~~ga 99 (448)
T PTZ00335 20 CWELFCLEHGIQPDGQMPSDKNIGVEDDAFNTFFSETGAGKHVPRCVFLDLEPTVIDEVRTGTYRQLFHPEQLISGKEDA 99 (448)
T ss_pred HHHHHHHHhCcCCCCCccCCCcccccchhhcceeEEcCCCccccccccccCCcchhhhcccCccccccCchheeecCCCC
Confidence 7999999999999998754332 23578899999999999999999999999999999999899999999999999999
Q ss_pred CcccccccCCCCCCCCC
Q psy14218 79 GNNWAKGHYTEPIPLPV 95 (99)
Q Consensus 79 gnNwA~Gyy~~g~~~~~ 95 (99)
|||||+|||+.|+++.|
T Consensus 100 gnnwa~Gy~~~G~~~~d 116 (448)
T PTZ00335 100 ANNFARGHYTIGKEIVD 116 (448)
T ss_pred CCcccccccchhhhHhH
Confidence 99999999999998765
No 3
>PLN00221 tubulin alpha chain; Provisional
Probab=99.95 E-value=7.1e-30 Score=198.96 Aligned_cols=95 Identities=39% Similarity=0.738 Sum_probs=86.2
Q ss_pred CHHHHHhHhCCCCCCCccCCCc--hhhccccceeeecCCCceeceEEEecCCCCcccccccCCCCccccCCceeeccCCC
Q psy14218 1 FWEIISDEHGIDPTGAYHGDSD--LQLERINVYYNEASGSKYVPRAILVDLEPGTMDAVRSGPFGQIFRPDNFVFGQSGA 78 (99)
Q Consensus 1 fWe~~~~EH~i~~~g~~~~~~~--~~~~~~~~fF~e~~~~~~~pRav~iD~ep~~i~~i~~~~~~~lf~~~~~i~~~~ga 78 (99)
||+++|+||+|+++|.+..... .+.+++++||+|+.+++|+|||||||+||++|++|+.+++++||++++++++++||
T Consensus 20 fW~~l~~Eh~i~~~g~~~~~~~~~~~~~~~~~fF~e~~~~~~~pRav~iD~e~~~i~~i~~~~~~~lf~~~~~i~~~~ga 99 (450)
T PLN00221 20 CWELYCLEHGIQPDGQMPSDKTVGGGDDAFNTFFSETGAGKHVPRAVFVDLEPTVIDEVRTGTYRQLFHPEQLISGKEDA 99 (450)
T ss_pred HHHHHHHHhCcCCCCCccCCccccccchhhhhheeccCCcccccchhcCCCChhhhhhhccCccccccCccceeccCCCc
Confidence 7999999999999998754432 23578999999999999999999999999999999998889999999999999999
Q ss_pred CcccccccCCCCCCCCC
Q psy14218 79 GNNWAKGHYTEPIPLPV 95 (99)
Q Consensus 79 gnNwA~Gyy~~g~~~~~ 95 (99)
|||||+|||+.|++++|
T Consensus 100 gNnwa~Gy~~~g~~~~~ 116 (450)
T PLN00221 100 ANNFARGHYTIGKEIVD 116 (450)
T ss_pred cccccccccchhHHHHH
Confidence 99999999999998764
No 4
>KOG1374|consensus
Probab=99.95 E-value=1.4e-29 Score=192.15 Aligned_cols=94 Identities=35% Similarity=0.746 Sum_probs=86.6
Q ss_pred CHHHHHhHhCCCCCCCccCCCchhhccccceeeecCCCceeceEEEecCCCCcccccccCCCCccccCCceeec--cCCC
Q psy14218 1 FWEIISDEHGIDPTGAYHGDSDLQLERINVYYNEASGSKYVPRAILVDLEPGTMDAVRSGPFGQIFRPDNFVFG--QSGA 78 (99)
Q Consensus 1 fWe~~~~EH~i~~~g~~~~~~~~~~~~~~~fF~e~~~~~~~pRav~iD~ep~~i~~i~~~~~~~lf~~~~~i~~--~~ga 78 (99)
||+++|+||||.++|.+....+.+.++-++||++..++.|+||||||||||+||+.+.+++++++|+++|+++. +.||
T Consensus 21 fwk~L~~Ehgis~~g~l~d~~~~~~drKdvFFyqadd~~yipRAvLvDlEPrVIn~~~~~~~s~l~n~eni~~s~~ggGA 100 (448)
T KOG1374|consen 21 FWKQLCLEHGISPDGILEDFATEGADRKDVFFYQADDNHYIPRAVLVDLEPRVINQILSSPYSGLYNPENIFLSDHGGGA 100 (448)
T ss_pred HHHHHHHhcCCCcCCcccchhhhCccccccceeeccCCccccceeeeccchHHHhccccchhhcccCccceEEecCCCCc
Confidence 79999999999999998877777788999999999999999999999999999999999999999999999975 4799
Q ss_pred CcccccccCCCCCCCCC
Q psy14218 79 GNNWAKGHYTEPIPLPV 95 (99)
Q Consensus 79 gnNwA~Gyy~~g~~~~~ 95 (99)
|||||.||. .|+++.|
T Consensus 101 GNNWA~GY~-~G~~~~e 116 (448)
T KOG1374|consen 101 GNNWASGYS-QGERVQE 116 (448)
T ss_pred ccccccccc-cchhhHH
Confidence 999999976 4888764
No 5
>PLN00220 tubulin beta chain; Provisional
Probab=99.95 E-value=3.6e-29 Score=194.76 Aligned_cols=95 Identities=84% Similarity=1.457 Sum_probs=87.7
Q ss_pred CHHHHHhHhCCCCCCCccCCCchhhccccceeeecCCCceeceEEEecCCCCcccccccCCCCccccCCceeeccCCCCc
Q psy14218 1 FWEIISDEHGIDPTGAYHGDSDLQLERINVYYNEASGSKYVPRAILVDLEPGTMDAVRSGPFGQIFRPDNFVFGQSGAGN 80 (99)
Q Consensus 1 fWe~~~~EH~i~~~g~~~~~~~~~~~~~~~fF~e~~~~~~~pRav~iD~ep~~i~~i~~~~~~~lf~~~~~i~~~~gagn 80 (99)
||+++|+||+|+++|.+....+.+.+++++||+|...++|+|||||||+||+||++++.++++++|++++++++++||||
T Consensus 20 ~w~~l~~eh~~~~~g~~~~~~~~~~~~~~~~f~e~~~~~~~pRav~iD~e~~~i~~i~~~~~~~~~~~~~~~~~~~gagn 99 (447)
T PLN00220 20 FWEVVCDEHGIDPTGTYHGDSDLQLERINVYYNEASGGRYVPRAVLMDLEPGTMDSVRSGPYGQIFRPDNFVFGQSGAGN 99 (447)
T ss_pred HHHHHHHHhCCCCCCCcCCCcccccccccceeccCCCCcccceeEecCCcHHHHHHHhcCccccccCccceEecccCCCC
Confidence 79999999999999988665555557889999999999999999999999999999999999999999999999999999
Q ss_pred ccccccCCCCCCCCC
Q psy14218 81 NWAKGHYTEPIPLPV 95 (99)
Q Consensus 81 NwA~Gyy~~g~~~~~ 95 (99)
|||+|||+.|++++|
T Consensus 100 nwa~G~~~~g~~~~~ 114 (447)
T PLN00220 100 NWAKGHYTEGAELID 114 (447)
T ss_pred ccCceeecccHHHHH
Confidence 999999999998764
No 6
>cd02188 gamma_tubulin Gamma-tubulin is a ubiquitous phylogenetically conserved member of tubulin superfamily. Gamma is a low abundance protein present within the cells in both various types of microtubule-organizing centers and cytoplasmic protein complexes. Gamma-tubulin recruits the alpha/beta-tubulin dimers that form the minus ends of microtubules and is thought to be involved in microtubule nucleation and capping.
Probab=99.94 E-value=2e-28 Score=190.02 Aligned_cols=94 Identities=34% Similarity=0.738 Sum_probs=84.6
Q ss_pred CHHHHHhHhCCCCCCCccCCCchhhccccceeeecCCCceeceEEEecCCCCcccccccCCCCccccCCceeeccC--CC
Q psy14218 1 FWEIISDEHGIDPTGAYHGDSDLQLERINVYYNEASGSKYVPRAILVDLEPGTMDAVRSGPFGQIFRPDNFVFGQS--GA 78 (99)
Q Consensus 1 fWe~~~~EH~i~~~g~~~~~~~~~~~~~~~fF~e~~~~~~~pRav~iD~ep~~i~~i~~~~~~~lf~~~~~i~~~~--ga 78 (99)
|||++|+||+|+++|.+...++.+.+++++||+|+.+++|+|||||||+||+||++|+.++++++|++++++++++ ||
T Consensus 19 ~We~l~~eh~~~~~g~~~~~~~~~~~~~~~fF~e~~~~~~~pRav~iD~Ep~vi~~i~~~~~~~lf~~~~~~~~~~~~ga 98 (431)
T cd02188 19 FWKQLCAEHGISPDGILEDFATDGGDRKDVFFYQADDEHYVPRAILIDLEPRVINSIQNSEYRNLYNPENIFLSKHGGGA 98 (431)
T ss_pred HHHHHHHHhCCCCCCCcCCCccccccccceeEEECCCCccCCcceeccCCcchhhhhhcCccccccCccceEeeccCCCc
Confidence 7999999999999998765544456789999999999999999999999999999999998999999999999998 99
Q ss_pred CcccccccCCCCCCCCC
Q psy14218 79 GNNWAKGHYTEPIPLPV 95 (99)
Q Consensus 79 gnNwA~Gyy~~g~~~~~ 95 (99)
|||||+||+ .|++++|
T Consensus 99 gnnwa~Gy~-~g~~~~d 114 (431)
T cd02188 99 GNNWASGYS-QGEEVQE 114 (431)
T ss_pred cccHHHHHH-HHHHHHH
Confidence 999999966 5877654
No 7
>KOG1376|consensus
Probab=99.94 E-value=3.7e-28 Score=183.56 Aligned_cols=95 Identities=39% Similarity=0.755 Sum_probs=88.6
Q ss_pred CHHHHHhHhCCCCCCCccCCCch--hhccccceeeecCCCceeceEEEecCCCCcccccccCCCCccccCCceeeccCCC
Q psy14218 1 FWEIISDEHGIDPTGAYHGDSDL--QLERINVYYNEASGSKYVPRAILVDLEPGTMDAVRSGPFGQIFRPDNFVFGQSGA 78 (99)
Q Consensus 1 fWe~~~~EH~i~~~g~~~~~~~~--~~~~~~~fF~e~~~~~~~pRav~iD~ep~~i~~i~~~~~~~lf~~~~~i~~~~ga 78 (99)
+||++|.||||+++|.++.+.+. ..+.+++||+++..++++||++|||+||. |+++++++++.+|.|+++|.||++|
T Consensus 20 Cwel~clEhgi~~~g~~p~~~~~~~~~~~~~tff~~t~~~k~~pr~~fVDlEPt-idevrtG~y~~lfHPeqlitGkedA 98 (407)
T KOG1376|consen 20 CWELYCLEHGIQPDGQMPDDKSVGKGDDSFNTFFSETGAGKHVPRAVFVDLEPT-IDEVRTGTYRQLFHPEQLITGKEDA 98 (407)
T ss_pred hHHHHHHHhcCccCCcCCCCccccccCcccceeecccccccccceeEEEeccCc-cchhcccchhhccCchhccCcchHh
Confidence 69999999999999998765543 35689999999999999999999999999 9999999999999999999999999
Q ss_pred CcccccccCCCCCCCCCC
Q psy14218 79 GNNWAKGHYTEPIPLPVP 96 (99)
Q Consensus 79 gnNwA~Gyy~~g~~~~~~ 96 (99)
+||+|+|||++|+|+++.
T Consensus 99 annyArghyt~g~e~id~ 116 (407)
T KOG1376|consen 99 ANNYARGHYTIGKEIIDL 116 (407)
T ss_pred hhhHHhhhhhcchhhhHH
Confidence 999999999999999863
No 8
>cd02186 alpha_tubulin The tubulin superfamily includes five distinct families, the alpha-, beta-, gamma-, delta-, and epsilon-tubulins and a sixth family (zeta-tubulin) which is present only in kinetoplastid protozoa. The alpha- and beta-tubulins are the major components of microtubules, while gamma-tubulin plays a major role in the nucleation of microtubule assembly. The delta- and epsilon-tubulins are widespread but unlike the alpha, beta, and gamma-tubulins they are not ubiquitous among eukaryotes. The alpha/beta-tubulin heterodimer is the structural subunit of microtubules. The alpha- and beta-tubulins share 40% amino-acid sequence identity, exist in several isotype forms, and undergo a variety of posttranslational modifications. The structures of alpha- and beta-tubulin are basically identical: each monomer is formed by a core of two beta-sheets surrounded by alpha-helices. The monomer structure is very compact, but can be divided into three regions based on function: the amino
Probab=99.94 E-value=3.6e-28 Score=188.66 Aligned_cols=95 Identities=38% Similarity=0.734 Sum_probs=86.6
Q ss_pred CHHHHHhHhCCCCCCCccCCCc--hhhccccceeeecCCCceeceEEEecCCCCcccccccCCCCccccCCceeeccCCC
Q psy14218 1 FWEIISDEHGIDPTGAYHGDSD--LQLERINVYYNEASGSKYVPRAILVDLEPGTMDAVRSGPFGQIFRPDNFVFGQSGA 78 (99)
Q Consensus 1 fWe~~~~EH~i~~~g~~~~~~~--~~~~~~~~fF~e~~~~~~~pRav~iD~ep~~i~~i~~~~~~~lf~~~~~i~~~~ga 78 (99)
||+++|+||+|+++|.+..... .+++++++||+|+.+++|+|||||||+||++|++++.++++.+|++++++.+++||
T Consensus 19 ~w~~l~~Eh~~~~~g~~~~~~~~~~~~~~~~~ff~e~~~~~~~pRav~iD~e~~~i~~i~~~~~~~l~~~~~~~~~~~g~ 98 (434)
T cd02186 19 CWELYCLEHGIQPDGQMPSDKTIGGGDDAFNTFFSETGSGKHVPRAVFIDLEPTVIDEVRTGTYRQLFHPEQLISGKEDA 98 (434)
T ss_pred HHHHHHHHhCcCCCCCccCCccccccccccceEEEECCCCcCcccccccCCcHHHHHhhccCccccccCccceeecCCCC
Confidence 7999999999999998755433 34678999999999999999999999999999999998889999999999999999
Q ss_pred CcccccccCCCCCCCCC
Q psy14218 79 GNNWAKGHYTEPIPLPV 95 (99)
Q Consensus 79 gnNwA~Gyy~~g~~~~~ 95 (99)
|||||+|||+.|+++.|
T Consensus 99 gnnwa~Gy~~~G~~~~~ 115 (434)
T cd02186 99 ANNFARGHYTIGKEIID 115 (434)
T ss_pred CcccccccchhHHHHHH
Confidence 99999999999998764
No 9
>PTZ00010 tubulin beta chain; Provisional
Probab=99.94 E-value=6.6e-28 Score=187.68 Aligned_cols=95 Identities=81% Similarity=1.439 Sum_probs=86.8
Q ss_pred CHHHHHhHhCCCCCCCccCCCchhhccccceeeecCCCceeceEEEecCCCCcccccccCCCCccccCCceeeccCCCCc
Q psy14218 1 FWEIISDEHGIDPTGAYHGDSDLQLERINVYYNEASGSKYVPRAILVDLEPGTMDAVRSGPFGQIFRPDNFVFGQSGAGN 80 (99)
Q Consensus 1 fWe~~~~EH~i~~~g~~~~~~~~~~~~~~~fF~e~~~~~~~pRav~iD~ep~~i~~i~~~~~~~lf~~~~~i~~~~gagn 80 (99)
||+++|+||+|+++|.+....+.+.+++++||+|+..|+|+|||||||+||++|+.++.++++.+|++++++++++||||
T Consensus 20 ~we~l~~eh~~~~~g~~~~~~~~~~~~~~~ff~e~~~~~~~pRav~iD~e~~vi~~i~~~~~~~lf~~~~~~~~~~gagN 99 (445)
T PTZ00010 20 FWEVISDEHGIDPTGTYQGDSDLQLERINVYYNEATGGRYVPRAVLMDLEPGTMDSVRAGPYGQLFRPDNFIFGQSGAGN 99 (445)
T ss_pred HHHHHHHHhCCCCCCCCCCCCcccccccceeecccCCCceEEeeeeccCChhhhhhhcccchhhhcCccceeecccCCcc
Confidence 79999999999999987655444457889999999999999999999999999999999888899999999999999999
Q ss_pred ccccccCCCCCCCCC
Q psy14218 81 NWAKGHYTEPIPLPV 95 (99)
Q Consensus 81 NwA~Gyy~~g~~~~~ 95 (99)
|||+|||+.|+++++
T Consensus 100 nwa~G~~~~g~~~~~ 114 (445)
T PTZ00010 100 NWAKGHYTEGAELID 114 (445)
T ss_pred ccccchhhhhHHHHH
Confidence 999999999998764
No 10
>PLN00222 tubulin gamma chain; Provisional
Probab=99.94 E-value=9.8e-28 Score=187.18 Aligned_cols=94 Identities=30% Similarity=0.656 Sum_probs=83.9
Q ss_pred CHHHHHhHhCCCCCCCccCCCchhhccccceeeecCCCceeceEEEecCCCCcccccccCCCCccccCCceeeccC--CC
Q psy14218 1 FWEIISDEHGIDPTGAYHGDSDLQLERINVYYNEASGSKYVPRAILVDLEPGTMDAVRSGPFGQIFRPDNFVFGQS--GA 78 (99)
Q Consensus 1 fWe~~~~EH~i~~~g~~~~~~~~~~~~~~~fF~e~~~~~~~pRav~iD~ep~~i~~i~~~~~~~lf~~~~~i~~~~--ga 78 (99)
||+++|+||+|+++|.+....+.+++++++||+|+..++|+|||||||+||+||++|+.++++++|++++++++++ ||
T Consensus 21 ~w~~l~~Eh~i~~~g~~~~~~~~~~~~~~~fF~e~~~~~~~pRav~iD~e~~vi~~i~~~~~~~lf~~~~~~~~~~~~ga 100 (454)
T PLN00222 21 FWKQLCLEHGISKDGILEDFATQGGDRKDVFFYQADDEHYIPRALLIDLEPRVINGIQNSEYRNLYNHENIFVSDHGGGA 100 (454)
T ss_pred HHHHHHHHhCCCCCCCccCccccccccccceeEEcCCCcccceeeecCCCcchhhhhccCccccccCccceeecccCCCc
Confidence 7999999999999998765544456789999999999999999999999999999999988999999999999996 69
Q ss_pred CcccccccCCCCCCCCC
Q psy14218 79 GNNWAKGHYTEPIPLPV 95 (99)
Q Consensus 79 gnNwA~Gyy~~g~~~~~ 95 (99)
|||||+||+ .|+++.|
T Consensus 101 gnn~a~Gy~-~g~~~~d 116 (454)
T PLN00222 101 GNNWASGYH-QGEQVEE 116 (454)
T ss_pred ccchHHhHH-HHHHHHH
Confidence 999999965 6877654
No 11
>cd02187 beta_tubulin The tubulin superfamily includes five distinct families, the alpha-, beta-, gamma-, delta-, and epsilon-tubulins and a sixth family (zeta-tubulin) which is present only in kinetoplastid protozoa. The alpha- and beta-tubulins are the major components of microtubules, while gamma-tubulin plays a major role in the nucleation of microtubule assembly. The delta- and epsilon-tubulins are widespread but unlike the alpha, beta, and gamma-tubulins they are not ubiquitous among eukaryotes. The alpha/beta-tubulin heterodimer is the structural subunit of microtubules. The alpha- and beta-tubulins share 40% amino-acid sequence identity, exist in several isotype forms, and undergo a variety of posttranslational modifications. The structures of alpha- and beta-tubulin are basically identical: each monomer is formed by a core of two beta-sheets surrounded by alpha-helices. The monomer structure is very compact, but can be divided into three regions based on function: the amino-
Probab=99.93 E-value=5.5e-27 Score=181.60 Aligned_cols=95 Identities=86% Similarity=1.448 Sum_probs=86.2
Q ss_pred CHHHHHhHhCCCCCCCccCCCchhhccccceeeecCCCceeceEEEecCCCCcccccccCCCCccccCCceeeccCCCCc
Q psy14218 1 FWEIISDEHGIDPTGAYHGDSDLQLERINVYYNEASGSKYVPRAILVDLEPGTMDAVRSGPFGQIFRPDNFVFGQSGAGN 80 (99)
Q Consensus 1 fWe~~~~EH~i~~~g~~~~~~~~~~~~~~~fF~e~~~~~~~pRav~iD~ep~~i~~i~~~~~~~lf~~~~~i~~~~gagn 80 (99)
||+++|+||+|+++|.+....+...+++++||+|+.+++|+|||||||+||++|++++.++++.+|++++++.+++||||
T Consensus 19 ~w~~l~~eh~~~~~g~~~~~~~~~~~~~~~fF~e~~~~~~~pRav~iD~e~~~i~~i~~~~~~~l~~~~~~~~~~~gagn 98 (425)
T cd02187 19 FWEVISDEHGLDPTGTYKGDSDLQLERINVYFNEASGGKYVPRAILVDLEPGTMDSVRSGPFGQLFRPDNFVFGQSGAGN 98 (425)
T ss_pred HHHHHHHHcCCCCCCCccCCccccccccceeEEecCCCceeeeeeeccCChhhhhhhhcCcccceecCcceeeccCCCCC
Confidence 79999999999999987544444457889999999999999999999999999999998888899999999999999999
Q ss_pred ccccccCCCCCCCCC
Q psy14218 81 NWAKGHYTEPIPLPV 95 (99)
Q Consensus 81 NwA~Gyy~~g~~~~~ 95 (99)
|||+|||+.|++++|
T Consensus 99 nwa~G~~~~G~~~~e 113 (425)
T cd02187 99 NWAKGHYTEGAELID 113 (425)
T ss_pred ccCccchhhcHHHHH
Confidence 999999999998764
No 12
>cd02189 delta_tubulin The tubulin superfamily includes five distinct families, the alpha-, beta-, gamma-, delta-, and epsilon-tubulins and a sixth family (zeta-tubulin) which is present only in kinetoplastid protozoa. The alpha- and beta-tubulins are the major components of microtubules, while gamma-tubulin plays a major role in the nucleation of microtubule assembly. The delta- and epsilon-tubulins are widespread but unlike the alpha, beta, and gamma-tubulins they are not ubiquitous among eukaryotes. Delta-tubulin plays an essential role in forming the triplet microtubules of centrioles and basal bodies.
Probab=99.93 E-value=5.2e-27 Score=182.69 Aligned_cols=91 Identities=24% Similarity=0.475 Sum_probs=82.3
Q ss_pred CHHHHHhHhCCCCCCCccCCCchhhccccceeeecCCCceeceEEEecCCCCcccccccCCC--CccccCCceeeccCCC
Q psy14218 1 FWEIISDEHGIDPTGAYHGDSDLQLERINVYYNEASGSKYVPRAILVDLEPGTMDAVRSGPF--GQIFRPDNFVFGQSGA 78 (99)
Q Consensus 1 fWe~~~~EH~i~~~g~~~~~~~~~~~~~~~fF~e~~~~~~~pRav~iD~ep~~i~~i~~~~~--~~lf~~~~~i~~~~ga 78 (99)
||+++|+||+++++|.+. .+.+++++||+|...++|+|||||||+||+||++|+++.. +++|++++++++++||
T Consensus 18 fw~~l~~Eh~~~~~g~~~----~~~~~~~~ff~e~~~~~~~pRav~iD~ep~vi~~i~~~~~~~~~~f~~~~~~~~~~ga 93 (446)
T cd02189 18 LFDTLAKEASSSDDEGYK----YERDAQERFFSEKSDGQPIARSVLVDMEPKVIESTLSKSSGGTWKYDKKNVICQQSGS 93 (446)
T ss_pred HHHHHHHHhCCCCCCCcc----ccccccceeecccCCCCcCCceeecCCCchHHHHhhcCCCCcccccCchheeecCCCC
Confidence 799999999999998763 2357889999999999999999999999999999998653 4799999999999999
Q ss_pred CcccccccCCCCCCCCC
Q psy14218 79 GNNWAKGHYTEPIPLPV 95 (99)
Q Consensus 79 gnNwA~Gyy~~g~~~~~ 95 (99)
|||||+|||+.|+++.|
T Consensus 94 gnnwa~Gy~~~g~~~~~ 110 (446)
T cd02189 94 GNNWAYGYYVHGPQIKE 110 (446)
T ss_pred ccchhccccccchhhHH
Confidence 99999999999998865
No 13
>PTZ00387 epsilon tubulin; Provisional
Probab=99.93 E-value=7.3e-27 Score=182.72 Aligned_cols=88 Identities=33% Similarity=0.630 Sum_probs=78.4
Q ss_pred CHHHHHhHhC-CCCCCCccCCCchhhccccceeeecC-----CC--ceeceEEEecCCCCcccccccCCCCccccCCcee
Q psy14218 1 FWEIISDEHG-IDPTGAYHGDSDLQLERINVYYNEAS-----GS--KYVPRAILVDLEPGTMDAVRSGPFGQIFRPDNFV 72 (99)
Q Consensus 1 fWe~~~~EH~-i~~~g~~~~~~~~~~~~~~~fF~e~~-----~~--~~~pRav~iD~ep~~i~~i~~~~~~~lf~~~~~i 72 (99)
||+++|+||+ |+++|.+ ++++++||++.+ .+ +|+|||||||+||+||++|+.++++++|++++++
T Consensus 20 fW~~l~~Eh~~i~~~g~~-------~~~~~~fF~~~~~~~~~~~~~~~~pRav~vD~Ep~vi~~i~~~~~~~~f~~~~~i 92 (465)
T PTZ00387 20 FWDVALKEHKKINANPQY-------DDARDSFFENVSENVNRPGKENLKARAVLVDMEEGVLNQILKSPLGDLFDENFFV 92 (465)
T ss_pred HHHHHHHHhCccCCCCcc-------cccccceecccccccccCCCccccCcccccCCCccHHHHhhcCCcccccCccccc
Confidence 7999999999 8898865 367899998533 23 4999999999999999999998899999999999
Q ss_pred eccCCCCcccccccCCCCCCCCC
Q psy14218 73 FGQSGAGNNWAKGHYTEPIPLPV 95 (99)
Q Consensus 73 ~~~~gagnNwA~Gyy~~g~~~~~ 95 (99)
++++|||||||+|||+.|+++.|
T Consensus 93 ~~~~GaGNnwa~G~~~~g~~~~d 115 (465)
T PTZ00387 93 SDVSGAGNNWAVGHMEYGDKYID 115 (465)
T ss_pred ccCCCCCCCcCCCcccccHHHHH
Confidence 99999999999999999988754
No 14
>PF00091 Tubulin: Tubulin/FtsZ family, GTPase domain; InterPro: IPR003008 This domain is found in all tubulin chains, as well as the bacterial FtsZ family of proteins. These proteins are involved in polymer formation. Tubulin is the major component of microtubules, while FtsZ is the polymer-forming protein of bacterial cell division, it is part of a ring in the middle of the dividing cell that is required for constriction of cell membrane and cell envelope to yield two daughter cells. FtsZ and tubulin are GTPases, this entry is the GTPase domain. FtsZ can polymerise into tubes, sheets, and rings in vitro and is ubiquitous in bacteria and archaea.; GO: 0051258 protein polymerization, 0043234 protein complex; PDB: 3E22_B 1SA1_D 3DU7_B 2P4N_B 3DCO_B 1Z2B_D 1SA0_B 2XRP_C 1TVK_B 2BTQ_B ....
Probab=99.81 E-value=9.8e-22 Score=140.10 Aligned_cols=89 Identities=45% Similarity=0.886 Sum_probs=78.6
Q ss_pred CHHHHHhHhCCCCCCCccCCCchhhccccceeeecCCCceeceEEEecCCCCcccccccCCCCccccCCceeeccCCCCc
Q psy14218 1 FWEIISDEHGIDPTGAYHGDSDLQLERINVYYNEASGSKYVPRAILVDLEPGTMDAVRSGPFGQIFRPDNFVFGQSGAGN 80 (99)
Q Consensus 1 fWe~~~~EH~i~~~g~~~~~~~~~~~~~~~fF~e~~~~~~~pRav~iD~ep~~i~~i~~~~~~~lf~~~~~i~~~~gagn 80 (99)
||+++|+||+|+++ .......++.++||++...++++||+|+||+||++|++++..+.+++|.+++++.+++|+||
T Consensus 18 ~~~~l~~e~~~~~~----~~~~~~~~~~~~~f~~~~~~~~~~r~i~iDtd~~~l~~i~~~~~~~l~~~~~~~~~~~g~g~ 93 (216)
T PF00091_consen 18 FWELLCREHGINPD----SKSQYNRENINSFFSESSSGKYVPRAIAIDTDPKVLDEIRASPKRSLFDPNNLISGQEGSGN 93 (216)
T ss_dssp HHHHHHHHCTBTTT----SSSSTTSSTGCCTEEESTTTBESEEEEEEESSHHHHHHHHTSEETTESCGGGEEETSSTSTT
T ss_pred HHHHHHHhhccccc----cccccccccccceeeecccccccccccccccccccccccccccccccccccccccccccccc
Confidence 69999999999998 22334457889999999999999999999999999999998887899999999999999999
Q ss_pred ccccccCCCCCCC
Q psy14218 81 NWAKGHYTEPIPL 93 (99)
Q Consensus 81 NwA~Gyy~~g~~~ 93 (99)
||++||+..|+++
T Consensus 94 n~~~G~~~~~~~~ 106 (216)
T PF00091_consen 94 NWAVGYYTFGEEA 106 (216)
T ss_dssp SHHHHHHHHHHHH
T ss_pred ccccccccccccc
Confidence 9999998655443
No 15
>cd02190 epsilon_tubulin The tubulin superfamily includes five distinct families, the alpha-, beta-, gamma-, delta-, and epsilon-tubulins and a sixth family (zeta-tubulin) which is present only in kinetoplastid protozoa. The epsilon-tubulins which are widespread but not ubiquitous among eukaryotes play a role in basal body/centriole morphogenesis.
Probab=99.77 E-value=4.4e-20 Score=141.46 Aligned_cols=56 Identities=34% Similarity=0.571 Sum_probs=52.9
Q ss_pred eeceEEEecCCCCcccccccCCCCccccCCceeeccCCCCcccccccCCCCCCCCC
Q psy14218 40 YVPRAILVDLEPGTMDAVRSGPFGQIFRPDNFVFGQSGAGNNWAKGHYTEPIPLPV 95 (99)
Q Consensus 40 ~~pRav~iD~ep~~i~~i~~~~~~~lf~~~~~i~~~~gagnNwA~Gyy~~g~~~~~ 95 (99)
++|||||||+||++|++++.++++++|++++++.++.|||||||+|||+.|+++.|
T Consensus 28 ~~pR~v~iD~e~~~i~~i~~~~~~~~~~~~~~~~~~~gaGnn~a~G~~~~g~~~~~ 83 (379)
T cd02190 28 LKARAVLIDMEEGVVNEILKGPLRDLFDETQLVTDVSGAGNNWAVGYHQYGHQYID 83 (379)
T ss_pred cCCcceeccCChhHHHHHhcCccccccCcccccccCCCCCCCccceeeccchhHHH
Confidence 78999999999999999999888999999999999999999999999999988754
No 16
>KOG1375|consensus
Probab=99.24 E-value=2.9e-12 Score=97.42 Aligned_cols=67 Identities=84% Similarity=1.315 Sum_probs=61.2
Q ss_pred CchhhccccceeeecCCCceeceEEEecCCCCcccccccCCCCccccCCceeeccCCCCcccccccCCCCCCCCCC
Q psy14218 21 SDLQLERINVYYNEASGSKYVPRAILVDLEPGTMDAVRSGPFGQIFRPDNFVFGQSGAGNNWAKGHYTEPIPLPVP 96 (99)
Q Consensus 21 ~~~~~~~~~~fF~e~~~~~~~pRav~iD~ep~~i~~i~~~~~~~lf~~~~~i~~~~gagnNwA~Gyy~~g~~~~~~ 96 (99)
++.|.++++++|++...++|+||||++||||.+++.|..++++.+|+|++ +++| +|||+.|+++.|.
T Consensus 4 ~~~q~~~i~~~~~~~~~~~~~~ravlvdlepgs~dsv~~~~~g~~frp~~---~~sg------~ghy~~ga~~~ds 70 (369)
T KOG1375|consen 4 SDLQLERINVYYNEAGGGKYVPRAVLVDLEPGSMDSVRSGPFGQIFRPDN---GQSG------KGHYTEGAELVDS 70 (369)
T ss_pred ccceeeeeeeeecccccccccchhheeeccCccccccccCccceeccCcC---CccC------ccceeeeeeehhc
Confidence 55778999999999999999999999999999999999999999999999 5544 8999999998874
No 17
>cd06059 Tubulin The tubulin superfamily includes five distinct families, the alpha-, beta-, gamma-, delta-, and epsilon-tubulins and a sixth family (zeta-tubulin) which is present only in kinetoplastid protozoa. The alpha- and beta-tubulins are the major components of microtubules, while gamma-tubulin plays a major role in the nucleation of microtubule assembly. The delta- and epsilon-tubulins are widespread but unlike the alpha, beta, and gamma-tubulins they are not ubiquitous among eukaryotes. The alpha/beta-tubulin heterodimer is the structural subunit of microtubules. The alpha- and beta-tubulins share 40% amino-acid sequence identity, exist in several isotype forms, and undergo a variety of posttranslational modifications. The structures of alpha- and beta-tubulin are basically identical: each monomer is formed by a core of two beta-sheets surrounded by alpha-helices. The monomer structure is very compact, but can be divided into three regions based on function: the amino-termi
Probab=99.21 E-value=2.8e-12 Score=98.30 Aligned_cols=51 Identities=41% Similarity=0.804 Sum_probs=47.7
Q ss_pred EEecCCCCcccccccCCCCccccCCceeeccCCCCcccccccCCCCCCCCC
Q psy14218 45 ILVDLEPGTMDAVRSGPFGQIFRPDNFVFGQSGAGNNWAKGHYTEPIPLPV 95 (99)
Q Consensus 45 v~iD~ep~~i~~i~~~~~~~lf~~~~~i~~~~gagnNwA~Gyy~~g~~~~~ 95 (99)
||||+||++|++++..+.+.+|++++++.+++|+|||||+||++.|+++.|
T Consensus 23 i~iD~e~~~i~~i~~~~~~~~~~~~~~~~~~~g~gnn~a~G~~~~g~~~~e 73 (382)
T cd06059 23 ILVDLDPRVINEILQGQLSKLFDPNQLVNGKEGSGNNWARGYYTIGPELID 73 (382)
T ss_pred HcccCCcchhhhhhcccccccCCcccEEeccccccccccccccccCHHHHH
Confidence 999999999999999888899999999999999999999999999977653
No 18
>smart00864 Tubulin Tubulin/FtsZ family, GTPase domain. This domain is found in all tubulin chains, as well as the bacterial FtsZ family of proteins. These proteins are involved in polymer formation. Tubulin is the major component of microtubules, while FtsZ is the polymer-forming protein of bacterial cell division, it is part of a ring in the middle of the dividing cell that is required for constriction of cell membrane and cell envelope to yield two daughter cells. FtsZ and tubulin are GTPases, this entry is the GTPase domain. FtsZ can polymerise into tubes, sheets, and rings in vitro and is ubiquitous in bacteria and archaea.
Probab=99.05 E-value=9e-12 Score=87.46 Aligned_cols=56 Identities=41% Similarity=0.756 Sum_probs=50.2
Q ss_pred ceeeecCCCceeceEEEecCCCCcccccccCCCCccccCCceeeccCCCCcccccccCC
Q psy14218 30 VYYNEASGSKYVPRAILVDLEPGTMDAVRSGPFGQIFRPDNFVFGQSGAGNNWAKGHYT 88 (99)
Q Consensus 30 ~fF~e~~~~~~~pRav~iD~ep~~i~~i~~~~~~~lf~~~~~i~~~~gagnNwA~Gyy~ 88 (99)
.||.+. ++.||+|++|+||++++.+...+.+.+|++.+.+.++.++||||++|||+
T Consensus 3 ~~~g~g---~~g~r~v~~d~e~~~i~~i~~~t~~~~l~~~~~~~~k~~~Gn~~~~G~~~ 58 (192)
T smart00864 3 KVFGVG---GYGPNAVLVDLEPGVVDEVRANTDAQALNPESLASGKIGAGNNWTRGLGA 58 (192)
T ss_pred EEEEeC---CchhhHHhhhcccCCceEEEECCHHHHhCCcccccchhcccccccccCCC
Confidence 466653 77899999999999999998777888999999999999999999999998
No 19
>cd00286 Tubulin_FtsZ Tubulin/FtsZ: Family includes tubulin alpha-, beta-, gamma-, delta-, and epsilon-tubulins as well as FtsZ, all of which are involved in polymer formation. Tubulin is the major component of microtubules, but also exists as a heterodimer and as a curved oligomer. Microtubules exist in all eukaryotic cells and are responsible for many functions, including cellular transport, cell motility, and mitosis. FtsZ forms a ring-shaped septum at the site of bacterial cell division, which is required for constriction of cell membrane and cell envelope to yield two daughter cells. FtsZ can polymerize into tubes, sheets, and rings in vitro and is ubiquitous in eubacteria, archaea, and chloroplasts.
Probab=98.69 E-value=3e-09 Score=79.86 Aligned_cols=50 Identities=42% Similarity=0.708 Sum_probs=46.2
Q ss_pred EEecCCCCcccccccCCCCccccCCceeeccCCCCcccccccCCCCCCCC
Q psy14218 45 ILVDLEPGTMDAVRSGPFGQIFRPDNFVFGQSGAGNNWAKGHYTEPIPLP 94 (99)
Q Consensus 45 v~iD~ep~~i~~i~~~~~~~lf~~~~~i~~~~gagnNwA~Gyy~~g~~~~ 94 (99)
|+||+|+++|+.++..+...+|++.+.+.++.||||||++||+..|++..
T Consensus 23 v~idtd~~~l~~~~~~~~~~~~~~~~~~~~~~gag~n~~~G~~~~~~~~~ 72 (328)
T cd00286 23 VLVDTEPGVIDETLSGPYRLLFCIGQLITHGGGAGNNWAFGHETAGEEYQ 72 (328)
T ss_pred heecCCHHHHHHHhCcccccccCccceeecCCCCCCCcceeeccccHHHH
Confidence 99999999999999888888999999999999999999999999887544
No 20
>cd02202 FtsZ_type2 FtsZ is a GTPase that is similar to the eukaryotic tubulins and is essential for cell division in prokaryotes. FtsZ is capable of polymerizing in a GTP-driven process into structures similar to those formed by tubulin. FtsZ forms a ring-shaped septum at the site of bacterial cell division, which is required for constriction of cell membrane and cell envelope to yield two daughter cells.
Probab=96.32 E-value=0.0015 Score=49.96 Aligned_cols=43 Identities=21% Similarity=0.421 Sum_probs=34.7
Q ss_pred ceeceEEEecCCCCcccccccCCCCccccCCceeecc-----CCCCccccccc
Q psy14218 39 KYVPRAILVDLEPGTMDAVRSGPFGQIFRPDNFVFGQ-----SGAGNNWAKGH 86 (99)
Q Consensus 39 ~~~pRav~iD~ep~~i~~i~~~~~~~lf~~~~~i~~~-----~gagnNwA~Gy 86 (99)
+|+||+|+||+|+..++.++. ...++.++.++ .|+|+||..|.
T Consensus 29 ~~~~~~iavntD~~~L~~l~~-----~~~~~ki~~g~~~t~G~GaG~~~~~G~ 76 (349)
T cd02202 29 GYCVGALAINTAKNDLKGLKH-----IPAEDRILIGQSEVKGHGVGADRELGA 76 (349)
T ss_pred ccceeEEEEECCHHHHHhhhc-----CCCCCEEEecCcccCCCCCCCChHHHH
Confidence 688999999999999988754 34577788876 38999998774
No 21
>PF10644 Misat_Tub_SegII: Misato Segment II tubulin-like domain; InterPro: IPR019605 The misato protein contains three distinct, conserved domains, segments I, II and III and is involved in the regulation of mitochondrial distribution and morphology []. This entry represents misato segment II. Segments I and III are common to tubulins (IPR003008 from INTERPRO), but segment II aligns with myosin heavy chain sequences from Drosophila melanogaster (Fruit fly, P05661 from SWISSPROT), rabbit (P04460 from SWISSPROT), and human. Segment II of misato is a major contributor to its greater length compared with the various tubulins. The most significant sequence similarities to this 54-amino acid region are from a motif found in the heavy chains of myosins from different organisms. A comparison of segment II with the vertebrate myosin heavy chains reveals that it is homologous to a myosin peptide in the hinge region linking the S2 and LMM domains. Segment II also contains heptad repeats which are characteristic of the myosin tail alpha-helical coiled-coils [].
Probab=86.08 E-value=0.54 Score=30.49 Aligned_cols=25 Identities=32% Similarity=0.573 Sum_probs=18.9
Q ss_pred cccceeeecC----CCceeceEEEecCCC
Q psy14218 27 RINVYYNEAS----GSKYVPRAILVDLEP 51 (99)
Q Consensus 27 ~~~~fF~e~~----~~~~~pRav~iD~ep 51 (99)
..+++|.+.. .-.|.||+|++|+--
T Consensus 39 ~~dvlfR~g~~~~g~~TYtPRlL~~Dlkg 67 (115)
T PF10644_consen 39 DHDVLFREGITLSGTVTYTPRLLLFDLKG 67 (115)
T ss_pred CCceEEecccCcCCCeeECCcEEEEecCC
Confidence 4578998753 347899999999754
No 22
>cd06060 misato Human Misato shows similarity with Tubulin/FtsZ family of GTPases and is localized to the the outer membrane of mitochondria. It has a role in mitochondrial fusion and in mitochondrial distribution and morphology. Mutations in its Drosophila homolog (misato) lead to irregular chromosome segregation during mitosis. Deletion of the budding yeast homolog DML1 is lethal and unregulate expression of DML1 leads to mitochondrial dispersion and abnormalities in cell morphology. The Misato/DML1 protein family is conserved from yeast to human, but its exact function is still unknown.
Probab=76.01 E-value=3.1 Score=33.61 Aligned_cols=80 Identities=19% Similarity=0.325 Sum_probs=46.1
Q ss_pred CHHHHHhHhCCCCCCCccCCCchhhccccceeeecC----CCceeceEEEecCCCCccc-----cccc----------CC
Q psy14218 1 FWEIISDEHGIDPTGAYHGDSDLQLERINVYYNEAS----GSKYVPRAILVDLEPGTMD-----AVRS----------GP 61 (99)
Q Consensus 1 fWe~~~~EH~i~~~g~~~~~~~~~~~~~~~fF~e~~----~~~~~pRav~iD~ep~~i~-----~i~~----------~~ 61 (99)
||..-...++..+++. ....+.+++|.+.. ...|.||+|++|+....-. .+.. +.
T Consensus 19 fwN~Qe~~~~y~~~~~------~~~~~~dvl~r~g~~~~g~~tytPR~l~~Dlkg~~gsl~~~~~l~~~~l~~~v~~WSD 92 (493)
T cd06060 19 WWNLQEANFGYDPDSP------ASELDHDVLYREGRTRQGQVTYTPRLLLLDLKGTLGHLPEEGSLKVYNLEASVNVWSD 92 (493)
T ss_pred hhhhhhhhcCCCCCCc------cccCCCceeeeccccCCCceeEcCcEEEEecCCcccccccccCcCCcccccchhhhhh
Confidence 6775555554454442 11234678888743 4579999999999874211 1100 00
Q ss_pred -CCccccCCceeec-----cCCCCccccccc
Q psy14218 62 -FGQIFRPDNFVFG-----QSGAGNNWAKGH 86 (99)
Q Consensus 62 -~~~lf~~~~~i~~-----~~gagnNwA~Gy 86 (99)
.+-.|+|+++..= ..+++++|+.|+
T Consensus 93 y~r~~yhPrS~~~L~~~~~~~~~~~fd~fg~ 123 (493)
T cd06060 93 YLYARLHPRSINVINQYNHDGTSQPFEVFGQ 123 (493)
T ss_pred cceeeeCCCceeeccchhcCCCCCCcccccc
Confidence 1223788877652 346677877764
No 23
>PF02044 Bombesin: Bombesin-like peptide; InterPro: IPR000874 Bombesin-like peptides comprise a large family of peptides which were initially isolated from amphibian skin, where they stimulate smooth muscle contraction. They were later found to be widely distributed in mammalian neural and endocrine cells. The amphibian peptides which belong to this family are currently classified into three subfamilies [, ]; the Bombesin group, which includes bombesin and alytesin; the Ranatensin group, which includes ranatensins, litorin, and Rohdei litorin; and the Phyllolitorin group, which includes Leu(8)- and Phe(8)-phyllolitorins. In mammals and birds two categories of bombesin-like peptides are known [, ], gastrin-releasing peptide (GRP), which stimulates the release of gastrin as well as other gastrointestinal hormones, and neuromedin B (NMB), a neuropeptide whose function is not yet clear. Bombesin-like peptides, like many other active peptides, are synthesized as larger protein precursors that are enzymatically converted to their mature forms. The final peptides are eight to fourteen residues long.; GO: 0007218 neuropeptide signaling pathway; PDB: 1C9A_A 1C98_A.
Probab=51.71 E-value=4.4 Score=16.87 Aligned_cols=12 Identities=42% Similarity=0.924 Sum_probs=6.0
Q ss_pred CcccccccCCCCC
Q psy14218 79 GNNWAKGHYTEPI 91 (99)
Q Consensus 79 gnNwA~Gyy~~g~ 91 (99)
|+-||.|+. .|+
T Consensus 1 g~~WAvGh~-Mgk 12 (14)
T PF02044_consen 1 GPQWAVGHF-MGK 12 (14)
T ss_dssp --TCHHHCT----
T ss_pred CCccceeee-ecc
Confidence 567999975 454
No 24
>COG2077 Tpx Peroxiredoxin [Posttranslational modification, protein turnover, chaperones]
Probab=50.70 E-value=16 Score=25.34 Aligned_cols=50 Identities=24% Similarity=0.194 Sum_probs=28.7
Q ss_pred HHHHhHhCCCCCCCccCCCch-hhccccceeeecCCCceeceEEEecCCCC
Q psy14218 3 EIISDEHGIDPTGAYHGDSDL-QLERINVYYNEASGSKYVPRAILVDLEPG 52 (99)
Q Consensus 3 e~~~~EH~i~~~g~~~~~~~~-~~~~~~~fF~e~~~~~~~pRav~iD~ep~ 52 (99)
..+|.+|||+.=-....-.+. ..++..+...|..-....||||+|=-|..
T Consensus 91 ~RfC~aeGi~nv~~lSd~r~~~Fge~yGv~I~egpL~gLlARaV~V~De~g 141 (158)
T COG2077 91 KRFCGAEGIENVITLSDFRDRAFGENYGVLINEGPLAGLLARAVFVLDENG 141 (158)
T ss_pred hhhhhhcCcccceEhhhhhhhhhhHhhCEEeccccccCeeeeEEEEEcCCC
Confidence 357999998762111111111 13556677776544467899999754443
No 25
>cd02191 FtsZ FtsZ is a GTPase that is similar to the eukaryotic tubulins and is essential for cell division in prokaryotes. FtsZ is capable of polymerizing in a GTP-driven process into structures similar to those formed by tubulin. FtsZ forms a ring-shaped septum at the site of bacterial cell division, which is required for constriction of cell membrane and cell envelope to yield two daughter cells.
Probab=39.69 E-value=13 Score=27.96 Aligned_cols=37 Identities=22% Similarity=0.346 Sum_probs=26.8
Q ss_pred ceEEEecCCCCcccccccCCCCccccCCceeec-----cCCCCccccccc
Q psy14218 42 PRAILVDLEPGTMDAVRSGPFGQIFRPDNFVFG-----QSGAGNNWAKGH 86 (99)
Q Consensus 42 pRav~iD~ep~~i~~i~~~~~~~lf~~~~~i~~-----~~gagnNwA~Gy 86 (99)
.+.+.||++...++.+.. ++-+..| ..|||+||+.|+
T Consensus 27 ~~~iainTd~~~L~~~~a--------~~ki~iG~~~t~g~GaG~~~~~G~ 68 (303)
T cd02191 27 RSAVAVNTDAQDLLGLEA--------ENRVLIGQARTKGLGAGANPELGA 68 (303)
T ss_pred ccEEEEECcHHHHhcCCC--------CcEEecCCccccCCCCCCCHHHHH
Confidence 589999999988877653 1223333 459999999885
No 26
>cd02960 AGR Anterior Gradient (AGR) family; members of this family are similar to secreted proteins encoded by the cement gland-specific genes XAG-1 and XAG-2, expressed in the anterior region of dorsal ectoderm of Xenopus. They are implicated in the formation of the cement gland and the induction of forebrain fate. The human homologs, hAG-2 and hAG-3, are secreted proteins associated with estrogen-positive breast tumors. Yeast two-hybrid studies identified the metastasis-associated C4.4a protein and dystroglycan as binding partners, indicating possible roles in the development and progression of breast cancer. hAG-2 has also been implicated in prostate cancer. Its gene was cloned as an androgen-inducible gene and it was shown to be overexpressed in prostate cancer cells at the mRNA and protein levels. AGR proteins contain one conserved cysteine corresponding to the first cysteine in the CXXC motif of TRX. They show high sequence similarity to ERp19.
Probab=37.20 E-value=36 Score=22.62 Aligned_cols=23 Identities=26% Similarity=0.476 Sum_probs=18.7
Q ss_pred CCceeceEEEecCCCCccccccc
Q psy14218 37 GSKYVPRAILVDLEPGTMDAVRS 59 (99)
Q Consensus 37 ~~~~~pRav~iD~ep~~i~~i~~ 59 (99)
.|.++||-||+|-+-+++.+|..
T Consensus 76 ~g~~vPtivFld~~g~vi~~i~G 98 (130)
T cd02960 76 DGQYVPRIMFVDPSLTVRADITG 98 (130)
T ss_pred cCcccCeEEEECCCCCCcccccc
Confidence 56789999999988888877643
No 27
>KOG1765|consensus
Probab=30.82 E-value=39 Score=23.80 Aligned_cols=13 Identities=31% Similarity=0.808 Sum_probs=11.7
Q ss_pred HHHHHhHhCCCCC
Q psy14218 2 WEIISDEHGIDPT 14 (99)
Q Consensus 2 We~~~~EH~i~~~ 14 (99)
||.++++.||.+-
T Consensus 95 We~FAr~KGI~kr 107 (181)
T KOG1765|consen 95 WERFARKKGIEKR 107 (181)
T ss_pred HHHHHHHcCcchh
Confidence 9999999999875
No 28
>cd02201 FtsZ_type1 FtsZ is a GTPase that is similar to the eukaryotic tubulins and is essential for cell division in prokaryotes. FtsZ is capable of polymerizing in a GTP-driven process into structures similar to those formed by tubulin. FtsZ forms a ring-shaped septum at the site of bacterial cell division, which is required for constriction of cell membrane and cell envelope to yield two daughter cells.
Probab=30.72 E-value=23 Score=26.45 Aligned_cols=43 Identities=12% Similarity=0.105 Sum_probs=28.2
Q ss_pred ceEEEecCCCCcccccccCCCCccccCCceeeccCCCCcccccccC
Q psy14218 42 PRAILVDLEPGTMDAVRSGPFGQIFRPDNFVFGQSGAGNNWAKGHY 87 (99)
Q Consensus 42 pRav~iD~ep~~i~~i~~~~~~~lf~~~~~i~~~~gagnNwA~Gyy 87 (99)
...+.+|+|...++.+... .+-++-++ .+.-.|||+||+.|+.
T Consensus 27 ~~~~a~ntD~~~L~~~~~~-~k~~ig~~--~t~g~Gag~~~~~g~~ 69 (304)
T cd02201 27 VEFIAANTDAQALAKSKAP-NKIQLGKE--LTRGLGAGGDPEVGRK 69 (304)
T ss_pred ceEEEEECCHHHHhcCCCC-cEEEcCCC--CCCCCCCCCCHHHHHH
Confidence 5788999999888776532 22222222 1334699999999963
No 29
>KOG2716|consensus
Probab=30.44 E-value=9.8 Score=27.87 Aligned_cols=45 Identities=16% Similarity=0.306 Sum_probs=26.8
Q ss_pred CCCCCccCCCchhhccccceeeecCCCc-----eeceEEEecCCCCcccc
Q psy14218 12 DPTGAYHGDSDLQLERINVYYNEASGSK-----YVPRAILVDLEPGTMDA 56 (99)
Q Consensus 12 ~~~g~~~~~~~~~~~~~~~fF~e~~~~~-----~~pRav~iD~ep~~i~~ 56 (99)
+.-|+.-.++-..+.+++.||...-... --.-+||||.+|+=.+.
T Consensus 10 nvGG~~F~Tsk~TLtk~dg~fk~m~e~~i~~~~d~s~~IFIDRSpKHF~~ 59 (230)
T KOG2716|consen 10 NVGGTIFKTSKSTLTKFDGFFKTMLETDIPVEKDESGCIFIDRSPKHFDT 59 (230)
T ss_pred ecCCeEEEeehhhhhhhhhHHHHHhhcCCccccCCcCcEEecCChhHHHH
Confidence 3445433333334567888887643322 23578999999985443
No 30
>PF02037 SAP: SAP domain; InterPro: IPR003034 The SAP (after SAF-A/B, Acinus and PIAS) motif is a putative DNA binding domain found in diverse nuclear proteins involved in chromosomal organisation [], including in apoptosis []. In yeast, SAP is found in the most distal N-terminal region of E3 SUMO-protein ligase SIZ1, where it is involved in nuclear localization [].; GO: 0003676 nucleic acid binding; PDB: 2RNN_A 1JEQ_A 2KW9_A 2KVU_A 2DO1_A 1ZBU_B 1ZBH_A 2DO5_A 2RNO_A 1H1J_S ....
Probab=28.78 E-value=47 Score=16.76 Aligned_cols=14 Identities=21% Similarity=0.385 Sum_probs=10.9
Q ss_pred HHHHhHhCCCCCCC
Q psy14218 3 EIISDEHGIDPTGA 16 (99)
Q Consensus 3 e~~~~EH~i~~~g~ 16 (99)
+.+|+++||...|.
T Consensus 10 k~~l~~~gL~~~G~ 23 (35)
T PF02037_consen 10 KEELKERGLSTSGK 23 (35)
T ss_dssp HHHHHHTTS-STSS
T ss_pred HHHHHHCCCCCCCC
Confidence 35899999999986
No 31
>PF13156 Mrr_cat_2: Restriction endonuclease
Probab=27.39 E-value=25 Score=23.46 Aligned_cols=29 Identities=14% Similarity=0.479 Sum_probs=20.1
Q ss_pred chhhccccceeeecCCCceeceEEEecCCC
Q psy14218 22 DLQLERINVYYNEASGSKYVPRAILVDLEP 51 (99)
Q Consensus 22 ~~~~~~~~~fF~e~~~~~~~pRav~iD~ep 51 (99)
..+...+++||.+++...+ .+.|+|++-.
T Consensus 57 ~I~k~didSF~s~sgk~~f-~~rliisTt~ 85 (129)
T PF13156_consen 57 TIQKSDIDSFFSASGKSRF-SRRLIISTTD 85 (129)
T ss_pred eEcHHHhhHHHHhcCCccc-cCcEEEEcCc
Confidence 3445669999998776554 5568887654
Done!