Query psy14218
Match_columns 99
No_of_seqs 102 out of 1058
Neff 7.1
Searched_HMMs 13730
Date Fri Aug 16 22:26:42 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy14218.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/14218hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1tubb1 c.32.1.1 (B:1-245) Tub 100.0 6.8E-34 4.9E-38 204.1 -1.5 95 1-95 20-114 (243)
2 d1tuba1 c.32.1.1 (A:1-245) Tub 100.0 2.5E-33 1.8E-37 201.4 0.4 95 1-95 20-116 (245)
3 d2btoa1 c.32.1.1 (A:3-246) Tub 100.0 6.4E-31 4.7E-35 188.6 -0.2 94 1-95 20-116 (244)
4 d1ltqa1 c.108.1.9 (A:153-301) 37.0 6.8 0.00049 22.5 1.5 16 41-56 6-21 (149)
5 d2csba1 a.60.2.4 (A:351-409) T 28.6 6 0.00044 20.1 0.1 12 4-15 5-16 (59)
6 d2vjva1 d.58.57.1 (A:6-130) IS 20.5 1.5 0.00011 26.3 -4.0 41 45-87 62-107 (125)
7 d2cyua1 a.9.1.1 (A:2-40) E3-bi 17.9 22 0.0016 16.7 1.0 12 3-14 6-17 (39)
8 d2fyxa1 d.58.57.1 (A:1-130) Pu 17.8 2.4 0.00018 25.4 -3.4 9 79-87 100-108 (130)
9 d2b82a1 c.108.1.12 (A:4-212) C 17.4 23 0.0017 22.7 1.3 17 41-57 34-50 (209)
10 d2j0151 g.41.8.5 (5:2-60) Ribo 17.0 27 0.002 18.0 1.3 14 81-95 45-58 (59)
No 1
>d1tubb1 c.32.1.1 (B:1-245) Tubulin beta-subunit {Pig (Sus scrofa) [TaxId: 9823]}
Probab=99.97 E-value=6.8e-34 Score=204.13 Aligned_cols=95 Identities=89% Similarity=1.488 Sum_probs=90.1
Q ss_pred CHHHHHhHhCCCCCCCccCCCchhhccccceeeecCCCceeceEEEecCCCCcccccccCCCCccccCCceeeccCCCCc
Q psy14218 1 FWEIISDEHGIDPTGAYHGDSDLQLERINVYYNEASGSKYVPRAILVDLEPGTMDAVRSGPFGQIFRPDNFVFGQSGAGN 80 (99)
Q Consensus 1 fWe~~~~EH~i~~~g~~~~~~~~~~~~~~~fF~e~~~~~~~pRav~iD~ep~~i~~i~~~~~~~lf~~~~~i~~~~gagn 80 (99)
||+++|+||+|+++|.+..+.+.+.+++++||+|...++|+|||||||+||+||+++++++++++|+++++|++++||||
T Consensus 20 fw~~~~~Eh~i~~~g~~~~~~~~~~~~~~~~f~e~~~~~~~pRav~iD~Ep~vi~~i~~~~~~~~f~~~~~i~~~~gagN 99 (243)
T d1tubb1 20 FWEVISDEHGIDPTGSYHGDSDLQLERINVYYNEAAGNKYVPRAILVDLEPGTMDSVRSGPFGQIFRPDNFVFGQSGAGN 99 (243)
T ss_dssp HGGGTTTSCCSSCCCSSSSCCCCSSCCSSCCSSTTTTSTTCCCCEECCSSSHHHHHHSSSSSCCCCSSSCCCCTTCCCCS
T ss_pred HHHHHHHHcCCCCCCCCCCCcccchhccccccccCCCCccccceeEecCCcchhhhhccCccccccCccceEEcccCccc
Confidence 79999999999999998887877889999999999999999999999999999999999999999999999999999999
Q ss_pred ccccccCCCCCCCCC
Q psy14218 81 NWAKGHYTEPIPLPV 95 (99)
Q Consensus 81 NwA~Gyy~~g~~~~~ 95 (99)
|||+|||+.|+++.|
T Consensus 100 NwA~Gy~~~G~~~~d 114 (243)
T d1tubb1 100 NWAKGHYTEGAELVD 114 (243)
T ss_dssp STHHHHTSHHHHHHH
T ss_pred ceeeeeeccCHHHHH
Confidence 999999999987653
No 2
>d1tuba1 c.32.1.1 (A:1-245) Tubulin alpha-subunit {Pig (Sus scrofa) [TaxId: 9823]}
Probab=99.97 E-value=2.5e-33 Score=201.45 Aligned_cols=95 Identities=39% Similarity=0.741 Sum_probs=88.2
Q ss_pred CHHHHHhHhCCCCCCCccCCCc--hhhccccceeeecCCCceeceEEEecCCCCcccccccCCCCccccCCceeeccCCC
Q psy14218 1 FWEIISDEHGIDPTGAYHGDSD--LQLERINVYYNEASGSKYVPRAILVDLEPGTMDAVRSGPFGQIFRPDNFVFGQSGA 78 (99)
Q Consensus 1 fWe~~~~EH~i~~~g~~~~~~~--~~~~~~~~fF~e~~~~~~~pRav~iD~ep~~i~~i~~~~~~~lf~~~~~i~~~~ga 78 (99)
||+++|+||+|++||.+..++. .+++++++||+|...++|+|||||||+||+||++++.++++++|++++++++++||
T Consensus 20 ~w~~l~~Eh~i~~~g~~~~~~~~~~~~~~~~~fF~e~~~~~~~pRavlvD~E~~vI~~i~~~~~~~~f~~~~~i~~~~gs 99 (245)
T d1tuba1 20 CWELYCLEHGIQPDGQMPSDKTIGGGDDSFNTFFSETGAGKHVPRAVFVDLEPTVIDEVRTGTYRQLFHPEQLITGKEDA 99 (245)
T ss_dssp HHHHHTTTCCTTTCCCCSCCTTSSTTCCCSCCSSCSSSCTTTSCSCCEEESSHHHHHHHSGGGCSCCCCSSSEEECCSCC
T ss_pred HHHHHHHHhCcCCCCCccCccccccccccchhhhhcccCCccccceeEecCCcceeeeeccCcchhccCccccccCCCCc
Confidence 7999999999999998765543 35788999999999999999999999999999999999999999999999999999
Q ss_pred CcccccccCCCCCCCCC
Q psy14218 79 GNNWAKGHYTEPIPLPV 95 (99)
Q Consensus 79 gnNwA~Gyy~~g~~~~~ 95 (99)
|||||+|||+.|+++.|
T Consensus 100 gNNwA~Gy~~~G~~~~d 116 (245)
T d1tuba1 100 ANNYARGHYTIGKEIID 116 (245)
T ss_dssp CCSSSTTTTSHHHHTTH
T ss_pred ccchHhhhhccchhhHH
Confidence 99999999999998764
No 3
>d2btoa1 c.32.1.1 (A:3-246) Tubulin alpha-subunit {Prosthecobacter dejongeii [TaxId: 48465]}
Probab=99.95 E-value=6.4e-31 Score=188.63 Aligned_cols=94 Identities=35% Similarity=0.626 Sum_probs=81.2
Q ss_pred CHHHHHhHhCCCCCCCccCCCchhhccccceee---ecCCCceeceEEEecCCCCcccccccCCCCccccCCceeeccCC
Q psy14218 1 FWEIISDEHGIDPTGAYHGDSDLQLERINVYYN---EASGSKYVPRAILVDLEPGTMDAVRSGPFGQIFRPDNFVFGQSG 77 (99)
Q Consensus 1 fWe~~~~EH~i~~~g~~~~~~~~~~~~~~~fF~---e~~~~~~~pRav~iD~ep~~i~~i~~~~~~~lf~~~~~i~~~~g 77 (99)
||++||+||+|++.+........+.+++++||. |+..++|+|||||||+||+||++++++ .+++|+|+++|++++|
T Consensus 20 fw~~l~~EH~i~~~~~~~~~~~~~~~~~~~ff~~~~e~~~~~~~pRavliD~Ep~vi~~~~~~-~~~~f~~~~~i~~~~g 98 (244)
T d2btoa1 20 FWKTVCLEHGIDPLTGQTAPGVAPRGNWSSFFSKLGESSSGSYVPRAIMVDLEPSVIDNVKAT-SGSLFNPANLISRTEG 98 (244)
T ss_dssp HHHHHHHHHTCCTTTCCCSSSCCCSSSGGGTEEECSCC--CCEEECEEEEESSSHHHHHHHHH-STTCSCGGGEEECSSC
T ss_pred HHHHHHHHhCCCCCCCcCCCcccccCCccccccccccccCCCcccceEEEcCCcchhhhhccc-cccccCcccccccccc
Confidence 799999999999988766555555677888886 778899999999999999999998764 5899999999999999
Q ss_pred CCcccccccCCCCCCCCC
Q psy14218 78 AGNNWAKGHYTEPIPLPV 95 (99)
Q Consensus 78 agnNwA~Gyy~~g~~~~~ 95 (99)
||||||+|||+.|+++.|
T Consensus 99 sgnNwa~Gy~~~G~~~~d 116 (244)
T d2btoa1 99 AGGNFAVGYLGAGREVLP 116 (244)
T ss_dssp CTTCHHHHHTSHHHHHHH
T ss_pred cccchhhhcchhHHHHHH
Confidence 999999999999988654
No 4
>d1ltqa1 c.108.1.9 (A:153-301) Polynucleotide kinase, phosphatase domain {Bacteriophage T4 [TaxId: 10665]}
Probab=36.98 E-value=6.8 Score=22.50 Aligned_cols=16 Identities=19% Similarity=0.445 Sum_probs=13.0
Q ss_pred eceEEEecCCCCcccc
Q psy14218 41 VPRAILVDLEPGTMDA 56 (99)
Q Consensus 41 ~pRav~iD~ep~~i~~ 56 (99)
+|+||++|+|-..++.
T Consensus 6 kpk~vifDiDgTL~~~ 21 (149)
T d1ltqa1 6 KPKAVIFDVDGTLAKM 21 (149)
T ss_dssp SCEEEEEETBTTTBCC
T ss_pred CCcEEEEEcCCCcEeC
Confidence 5899999999876653
No 5
>d2csba1 a.60.2.4 (A:351-409) Topoisomerase V {Methanopyrus kandleri [TaxId: 2320]}
Probab=28.64 E-value=6 Score=20.15 Aligned_cols=12 Identities=42% Similarity=0.908 Sum_probs=9.6
Q ss_pred HHHhHhCCCCCC
Q psy14218 4 IISDEHGIDPTG 15 (99)
Q Consensus 4 ~~~~EH~i~~~g 15 (99)
.+.+|||+.||.
T Consensus 5 tlidehglspda 16 (59)
T d2csba1 5 TLIDEHGLSPDA 16 (59)
T ss_dssp HHHHHHCCCHHH
T ss_pred HHHHhcCCCcch
Confidence 477899998874
No 6
>d2vjva1 d.58.57.1 (A:6-130) ISHP608 transposase {Helicobacter pylori [TaxId: 210]}
Probab=20.53 E-value=1.5 Score=26.31 Aligned_cols=41 Identities=15% Similarity=0.298 Sum_probs=20.4
Q ss_pred EEecCCCC-----cccccccCCCCccccCCceeeccCCCCcccccccC
Q psy14218 45 ILVDLEPG-----TMDAVRSGPFGQIFRPDNFVFGQSGAGNNWAKGHY 87 (99)
Q Consensus 45 v~iD~ep~-----~i~~i~~~~~~~lf~~~~~i~~~~gagnNwA~Gyy 87 (99)
+||++.|+ +++.++..+-+.++..-.-+ .+.. +.-|++||+
T Consensus 62 llv~~~p~~sis~~v~~lKg~Ssr~i~~~f~~l-k~~~-~~fWs~gYf 107 (125)
T d2vjva1 62 ILADIDPSFGVMKFIKTAKGRSSRILRQEFNHL-KTKL-PTLWTNSCF 107 (125)
T ss_dssp EEEECCTTTCHHHHHHHHHHHHHHHHHHHCHHH-HHSC-SCSBCSCEE
T ss_pred EEEEeccccChhHhhchhcccchHHHHHHHHHH-HHhh-cCcCCCCEE
Confidence 56777775 34445544433333211111 1112 457999997
No 7
>d2cyua1 a.9.1.1 (A:2-40) E3-binding domain of dihydrolipoamide succinyltransferase {Escherichia coli [TaxId: 562]}
Probab=17.89 E-value=22 Score=16.71 Aligned_cols=12 Identities=25% Similarity=0.493 Sum_probs=9.4
Q ss_pred HHHHhHhCCCCC
Q psy14218 3 EIISDEHGIDPT 14 (99)
Q Consensus 3 e~~~~EH~i~~~ 14 (99)
..+++||+|+.+
T Consensus 6 rkla~e~gidl~ 17 (39)
T d2cyua1 6 RRLLAEHNLDAS 17 (39)
T ss_dssp HHHHHHHTCCGG
T ss_pred HHHHHHcCCCHH
Confidence 457899999765
No 8
>d2fyxa1 d.58.57.1 (A:1-130) Putative transposase DR0177 {Deinococcus radiodurans [TaxId: 1299]}
Probab=17.84 E-value=2.4 Score=25.44 Aligned_cols=9 Identities=33% Similarity=0.682 Sum_probs=7.2
Q ss_pred CcccccccC
Q psy14218 79 GNNWAKGHY 87 (99)
Q Consensus 79 gnNwA~Gyy 87 (99)
+.-|++|||
T Consensus 100 ~~~Ws~gY~ 108 (130)
T d2fyxa1 100 GNLWNPSYC 108 (130)
T ss_dssp TSSCCSCEE
T ss_pred CccccCcEE
Confidence 457999997
No 9
>d2b82a1 c.108.1.12 (A:4-212) Class B acid phosphatase, AphA {Escherichia coli [TaxId: 562]}
Probab=17.38 E-value=23 Score=22.75 Aligned_cols=17 Identities=18% Similarity=0.239 Sum_probs=14.7
Q ss_pred eceEEEecCCCCccccc
Q psy14218 41 VPRAILVDLEPGTMDAV 57 (99)
Q Consensus 41 ~pRav~iD~ep~~i~~i 57 (99)
.|.||.+|+|..|++..
T Consensus 34 ~P~AIifDIDETvLdns 50 (209)
T d2b82a1 34 PPMAVGFDIDDTVLFSS 50 (209)
T ss_dssp CCCEEEECCBTTTEECH
T ss_pred CCceEEEcchhhhhcCc
Confidence 47899999999999864
No 10
>d2j0151 g.41.8.5 (5:2-60) Ribosomal protein L32p {Thermus thermophilus [TaxId: 274]}
Probab=17.01 E-value=27 Score=17.96 Aligned_cols=14 Identities=14% Similarity=-0.102 Sum_probs=9.7
Q ss_pred ccccccCCCCCCCCC
Q psy14218 81 NWAKGHYTEPIPLPV 95 (99)
Q Consensus 81 NwA~Gyy~~g~~~~~ 95 (99)
+...||| .|+++++
T Consensus 45 C~~CG~Y-kGr~Vi~ 58 (59)
T d2j0151 45 CPECGYY-AGRKVLE 58 (59)
T ss_dssp CTTTCCS-SSCCSCC
T ss_pred CCCCCeE-CCEEeEe
Confidence 3446888 5888875
Done!