RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy14218
(99 letters)
>gnl|CDD|215107 PLN00220, PLN00220, tubulin beta chain; Provisional.
Length = 447
Score = 207 bits (528), Expect = 4e-67
Identities = 79/89 (88%), Positives = 86/89 (96%)
Query: 1 FWEIISDEHGIDPTGAYHGDSDLQLERINVYYNEASGSKYVPRAILVDLEPGTMDAVRSG 60
FWE++ DEHGIDPTG YHGDSDLQLERINVYYNEASG +YVPRA+L+DLEPGTMD+VRSG
Sbjct: 20 FWEVVCDEHGIDPTGTYHGDSDLQLERINVYYNEASGGRYVPRAVLMDLEPGTMDSVRSG 79
Query: 61 PFGQIFRPDNFVFGQSGAGNNWAKGHYTE 89
P+GQIFRPDNFVFGQSGAGNNWAKGHYTE
Sbjct: 80 PYGQIFRPDNFVFGQSGAGNNWAKGHYTE 108
>gnl|CDD|100016 cd02187, beta_tubulin, The tubulin superfamily includes five
distinct families, the alpha-, beta-, gamma-, delta-,
and epsilon-tubulins and a sixth family (zeta-tubulin)
which is present only in kinetoplastid protozoa. The
alpha- and beta-tubulins are the major components of
microtubules, while gamma-tubulin plays a major role in
the nucleation of microtubule assembly. The delta- and
epsilon-tubulins are widespread but unlike the alpha,
beta, and gamma-tubulins they are not ubiquitous among
eukaryotes. The alpha/beta-tubulin heterodimer is the
structural subunit of microtubules. The alpha- and
beta-tubulins share 40% amino-acid sequence identity,
exist in several isotype forms, and undergo a variety of
posttranslational modifications. The structures of
alpha- and beta-tubulin are basically identical: each
monomer is formed by a core of two beta-sheets
surrounded by alpha-helices. The monomer structure is
very compact, but can be divided into three regions
based on function: the amino-terminal nucleotide-binding
region, an intermediate taxol-binding region and the
carboxy-terminal region which probably constitutes the
binding surface for motor proteins.
Length = 425
Score = 206 bits (526), Expect = 6e-67
Identities = 81/89 (91%), Positives = 86/89 (96%)
Query: 1 FWEIISDEHGIDPTGAYHGDSDLQLERINVYYNEASGSKYVPRAILVDLEPGTMDAVRSG 60
FWE+ISDEHG+DPTG Y GDSDLQLERINVY+NEASG KYVPRAILVDLEPGTMD+VRSG
Sbjct: 19 FWEVISDEHGLDPTGTYKGDSDLQLERINVYFNEASGGKYVPRAILVDLEPGTMDSVRSG 78
Query: 61 PFGQIFRPDNFVFGQSGAGNNWAKGHYTE 89
PFGQ+FRPDNFVFGQSGAGNNWAKGHYTE
Sbjct: 79 PFGQLFRPDNFVFGQSGAGNNWAKGHYTE 107
>gnl|CDD|240228 PTZ00010, PTZ00010, tubulin beta chain; Provisional.
Length = 445
Score = 201 bits (514), Expect = 4e-65
Identities = 76/89 (85%), Positives = 86/89 (96%)
Query: 1 FWEIISDEHGIDPTGAYHGDSDLQLERINVYYNEASGSKYVPRAILVDLEPGTMDAVRSG 60
FWE+ISDEHGIDPTG Y GDSDLQLERINVYYNEA+G +YVPRA+L+DLEPGTMD+VR+G
Sbjct: 20 FWEVISDEHGIDPTGTYQGDSDLQLERINVYYNEATGGRYVPRAVLMDLEPGTMDSVRAG 79
Query: 61 PFGQIFRPDNFVFGQSGAGNNWAKGHYTE 89
P+GQ+FRPDNF+FGQSGAGNNWAKGHYTE
Sbjct: 80 PYGQLFRPDNFIFGQSGAGNNWAKGHYTE 108
>gnl|CDD|227356 COG5023, COG5023, Tubulin [Cytoskeleton].
Length = 443
Score = 156 bits (397), Expect = 1e-47
Identities = 52/89 (58%), Positives = 65/89 (73%)
Query: 1 FWEIISDEHGIDPTGAYHGDSDLQLERINVYYNEASGSKYVPRAILVDLEPGTMDAVRSG 60
FWE + EHGI P G SD ER +V++ EAS K+VPRAILVDLEPG +D VR+G
Sbjct: 20 FWETLCLEHGIGPDGTLLDSSDEGDERFDVFFYEASDGKFVPRAILVDLEPGVIDQVRNG 79
Query: 61 PFGQIFRPDNFVFGQSGAGNNWAKGHYTE 89
P+G +F P+N +FG+ GAGNNWA+GHYT
Sbjct: 80 PYGSLFHPENIIFGKEGAGNNWARGHYTV 108
>gnl|CDD|177802 PLN00221, PLN00221, tubulin alpha chain; Provisional.
Length = 450
Score = 94.1 bits (234), Expect = 3e-24
Identities = 37/89 (41%), Positives = 54/89 (60%), Gaps = 2/89 (2%)
Query: 2 WEIISDEHGIDPTGAYHGDSDLQL--ERINVYYNEASGSKYVPRAILVDLEPGTMDAVRS 59
WE+ EHGI P G D + + N +++E K+VPRA+ VDLEP +D VR+
Sbjct: 21 WELYCLEHGIQPDGQMPSDKTVGGGDDAFNTFFSETGAGKHVPRAVFVDLEPTVIDEVRT 80
Query: 60 GPFGQIFRPDNFVFGQSGAGNNWAKGHYT 88
G + Q+F P+ + G+ A NN+A+GHYT
Sbjct: 81 GTYRQLFHPEQLISGKEDAANNFARGHYT 109
>gnl|CDD|185562 PTZ00335, PTZ00335, tubulin alpha chain; Provisional.
Length = 448
Score = 90.9 bits (226), Expect = 4e-23
Identities = 36/89 (40%), Positives = 55/89 (61%), Gaps = 2/89 (2%)
Query: 2 WEIISDEHGIDPTGAYHGDSDLQLE--RINVYYNEASGSKYVPRAILVDLEPGTMDAVRS 59
WE+ EHGI P G D ++ +E N +++E K+VPR + +DLEP +D VR+
Sbjct: 21 WELFCLEHGIQPDGQMPSDKNIGVEDDAFNTFFSETGAGKHVPRCVFLDLEPTVIDEVRT 80
Query: 60 GPFGQIFRPDNFVFGQSGAGNNWAKGHYT 88
G + Q+F P+ + G+ A NN+A+GHYT
Sbjct: 81 GTYRQLFHPEQLISGKEDAANNFARGHYT 109
>gnl|CDD|215710 pfam00091, Tubulin, Tubulin/FtsZ family, GTPase domain. This
family includes the tubulin alpha, beta and gamma
chains, as well as the bacterial FtsZ family of
proteins. Members of this family are involved in
polymer formation. FtsZ is the polymer-forming protein
of bacterial cell division. It is part of a ring in the
middle of the dividing cell that is required for
constriction of cell membrane and cell envelope to
yield two daughter cells. FtsZ and tubulin are GTPases.
FtsZ can polymerise into tubes, sheets, and rings in
vitro and is ubiquitous in eubacteria and archaea.
Tubulin is the major component of microtubules.
Length = 210
Score = 87.0 bits (216), Expect = 9e-23
Identities = 32/90 (35%), Positives = 49/90 (54%), Gaps = 7/90 (7%)
Query: 1 FWEIISDEHGIDPTGAYHGDSDLQLERINVYYNEASGSKYVPRAILVDLEPGTMDAVRSG 60
WE++ EHGIDP G ++INV++ E+ Y PR I +D +P ++ +++G
Sbjct: 17 LWELLCKEHGIDPDG-----MLFHADKINVFFEESGDGVYGPRFIAIDTDPQVLNEIKAG 71
Query: 61 PFGQIFRPDNFVFGQSGAGNNWAKGHYTEP 90
+F +N G GAGNN A G+YT
Sbjct: 72 NK--LFIGNNLTKGLEGAGNNPAVGYYTHK 99
>gnl|CDD|100015 cd02186, alpha_tubulin, The tubulin superfamily includes five
distinct families, the alpha-, beta-, gamma-, delta-,
and epsilon-tubulins and a sixth family (zeta-tubulin)
which is present only in kinetoplastid protozoa. The
alpha- and beta-tubulins are the major components of
microtubules, while gamma-tubulin plays a major role in
the nucleation of microtubule assembly. The delta- and
epsilon-tubulins are widespread but unlike the alpha,
beta, and gamma-tubulins they are not ubiquitous among
eukaryotes. The alpha/beta-tubulin heterodimer is the
structural subunit of microtubules. The alpha- and
beta-tubulins share 40% amino-acid sequence identity,
exist in several isotype forms, and undergo a variety of
posttranslational modifications. The structures of
alpha- and beta-tubulin are basically identical: each
monomer is formed by a core of two beta-sheets
surrounded by alpha-helices. The monomer structure is
very compact, but can be divided into three regions
based on function: the amino-terminal nucleotide-binding
region, an intermediate taxol-binding region and the
carboxy-terminal region which probably constitutes the
binding surface for motor proteins.
Length = 434
Score = 88.5 bits (220), Expect = 3e-22
Identities = 36/89 (40%), Positives = 53/89 (59%), Gaps = 2/89 (2%)
Query: 2 WEIISDEHGIDPTGAYHGDS--DLQLERINVYYNEASGSKYVPRAILVDLEPGTMDAVRS 59
WE+ EHGI P G D + N +++E K+VPRA+ +DLEP +D VR+
Sbjct: 20 WELYCLEHGIQPDGQMPSDKTIGGGDDAFNTFFSETGSGKHVPRAVFIDLEPTVIDEVRT 79
Query: 60 GPFGQIFRPDNFVFGQSGAGNNWAKGHYT 88
G + Q+F P+ + G+ A NN+A+GHYT
Sbjct: 80 GTYRQLFHPEQLISGKEDAANNFARGHYT 108
>gnl|CDD|100017 cd02188, gamma_tubulin, Gamma-tubulin is a ubiquitous
phylogenetically conserved member of tubulin
superfamily. Gamma is a low abundance protein present
within the cells in both various types of
microtubule-organizing centers and cytoplasmic protein
complexes. Gamma-tubulin recruits the
alpha/beta-tubulin dimers that form the minus ends of
microtubules and is thought to be involved in
microtubule nucleation and capping.
Length = 431
Score = 86.9 bits (216), Expect = 1e-21
Identities = 32/90 (35%), Positives = 53/90 (58%), Gaps = 2/90 (2%)
Query: 1 FWEIISDEHGIDPTGAYHGDSDLQLERINVYYNEASGSKYVPRAILVDLEPGTMDAVRSG 60
FW+ + EHGI P G + +R +V++ +A YVPRAIL+DLEP ++++++
Sbjct: 19 FWKQLCAEHGISPDGILEDFATDGGDRKDVFFYQADDEHYVPRAILIDLEPRVINSIQNS 78
Query: 61 PFGQIFRPDNFVFGQS--GAGNNWAKGHYT 88
+ ++ P+N + GAGNNWA G+
Sbjct: 79 EYRNLYNPENIFLSKHGGGAGNNWASGYSQ 108
>gnl|CDD|214867 smart00864, Tubulin, Tubulin/FtsZ family, GTPase domain. This
domain is found in all tubulin chains, as well as the
bacterial FtsZ family of proteins. These proteins are
involved in polymer formation. Tubulin is the major
component of microtubules, while FtsZ is the
polymer-forming protein of bacterial cell division, it
is part of a ring in the middle of the dividing cell
that is required for constriction of cell membrane and
cell envelope to yield two daughter cells. FtsZ and
tubulin are GTPases, this entry is the GTPase domain.
FtsZ can polymerise into tubes, sheets, and rings in
vitro and is ubiquitous in bacteria and archaea.
Length = 192
Score = 77.5 bits (192), Expect = 2e-19
Identities = 21/65 (32%), Positives = 29/65 (44%), Gaps = 3/65 (4%)
Query: 28 INVYYNEASGSKYVPRAILVDLEPGTMDAVRSGPFGQIFRPDNFVFGQSGAGNNWAKGHY 87
+ P A+ VDLEPG +D VR+ Q P++ G+ AGNNW +G
Sbjct: 1 KIKVFGVG---GGGPNAVNVDLEPGVIDGVRANTDAQALNPESLASGKIQAGNNWTRGLG 57
Query: 88 TEPIP 92
P
Sbjct: 58 AGADP 62
>gnl|CDD|215108 PLN00222, PLN00222, tubulin gamma chain; Provisional.
Length = 454
Score = 78.3 bits (193), Expect = 1e-18
Identities = 28/88 (31%), Positives = 49/88 (55%), Gaps = 2/88 (2%)
Query: 1 FWEIISDEHGIDPTGAYHGDSDLQLERINVYYNEASGSKYVPRAILVDLEPGTMDAVRSG 60
FW+ + EHGI G + +R +V++ +A Y+PRA+L+DLEP ++ +++
Sbjct: 21 FWKQLCLEHGISKDGILEDFATQGGDRKDVFFYQADDEHYIPRALLIDLEPRVINGIQNS 80
Query: 61 PFGQIFRPDNFVFGQS--GAGNNWAKGH 86
+ ++ +N GAGNNWA G+
Sbjct: 81 EYRNLYNHENIFVSDHGGGAGNNWASGY 108
>gnl|CDD|100014 cd00286, Tubulin_FtsZ, Tubulin/FtsZ: Family includes tubulin
alpha-, beta-, gamma-, delta-, and epsilon-tubulins as
well as FtsZ, all of which are involved in polymer
formation. Tubulin is the major component of
microtubules, but also exists as a heterodimer and as a
curved oligomer. Microtubules exist in all eukaryotic
cells and are responsible for many functions, including
cellular transport, cell motility, and mitosis. FtsZ
forms a ring-shaped septum at the site of bacterial
cell division, which is required for constriction of
cell membrane and cell envelope to yield two daughter
cells. FtsZ can polymerize into tubes, sheets, and
rings in vitro and is ubiquitous in eubacteria,
archaea, and chloroplasts.
Length = 328
Score = 67.0 bits (164), Expect = 1e-14
Identities = 21/46 (45%), Positives = 26/46 (56%)
Query: 44 AILVDLEPGTMDAVRSGPFGQIFRPDNFVFGQSGAGNNWAKGHYTE 89
+LVD EPG +D SGP+ +F + GAGNNWA GH T
Sbjct: 22 LVLVDTEPGVIDETLSGPYRLLFCIGQLITHGGGAGNNWAFGHETA 67
>gnl|CDD|100023 cd06059, Tubulin, The tubulin superfamily includes five distinct
families, the alpha-, beta-, gamma-, delta-, and
epsilon-tubulins and a sixth family (zeta-tubulin)
which is present only in kinetoplastid protozoa. The
alpha- and beta-tubulins are the major components of
microtubules, while gamma-tubulin plays a major role in
the nucleation of microtubule assembly. The delta- and
epsilon-tubulins are widespread but unlike the alpha,
beta, and gamma-tubulins they are not ubiquitous among
eukaryotes. The alpha/beta-tubulin heterodimer is the
structural subunit of microtubules. The alpha- and
beta-tubulins share 40% amino-acid sequence identity,
exist in several isotype forms, and undergo a variety
of posttranslational modifications. The structures of
alpha- and beta-tubulin are basically identical: each
monomer is formed by a core of two beta-sheets
surrounded by alpha-helices. The monomer structure is
very compact, but can be divided into three regions
based on function: the amino-terminal
nucleotide-binding region, an intermediate
taxol-binding region and the carboxy-terminal region
which probably constitutes the binding surface for
motor proteins. Also included in this group is the
mitochondrial Misato/DML1 protein family, involved in
mitochondrial fusion and in mitochondrial distribution
and morphology.
Length = 382
Score = 65.4 bits (160), Expect = 5e-14
Identities = 22/53 (41%), Positives = 35/53 (66%)
Query: 37 GSKYVPRAILVDLEPGTMDAVRSGPFGQIFRPDNFVFGQSGAGNNWAKGHYTE 89
G+K+ ILVDL+P ++ + G ++F P+ V G+ G+GNNWA+G+YT
Sbjct: 15 GNKFWELLILVDLDPRVINEILQGQLSKLFDPNQLVNGKEGSGNNWARGYYTI 67
>gnl|CDD|240395 PTZ00387, PTZ00387, epsilon tubulin; Provisional.
Length = 465
Score = 59.4 bits (144), Expect = 7e-12
Identities = 31/88 (35%), Positives = 43/88 (48%), Gaps = 1/88 (1%)
Query: 1 FWEIISDEH-GIDPTGAYHGDSDLQLERINVYYNEASGSKYVPRAILVDLEPGTMDAVRS 59
FW++ EH I+ Y D E ++ N RA+LVD+E G ++ +
Sbjct: 20 FWDVALKEHKKINANPQYDDARDSFFENVSENVNRPGKENLKARAVLVDMEEGVLNQILK 79
Query: 60 GPFGQIFRPDNFVFGQSGAGNNWAKGHY 87
P G +F + FV SGAGNNWA GH
Sbjct: 80 SPLGDLFDENFFVSDVSGAGNNWAVGHM 107
>gnl|CDD|100019 cd02190, epsilon_tubulin, The tubulin superfamily includes five
distinct families, the alpha-, beta-, gamma-, delta-,
and epsilon-tubulins and a sixth family (zeta-tubulin)
which is present only in kinetoplastid protozoa. The
epsilon-tubulins which are widespread but not
ubiquitous among eukaryotes play a role in basal
body/centriole morphogenesis.
Length = 379
Score = 58.9 bits (143), Expect = 1e-11
Identities = 19/46 (41%), Positives = 28/46 (60%)
Query: 43 RAILVDLEPGTMDAVRSGPFGQIFRPDNFVFGQSGAGNNWAKGHYT 88
RA+L+D+E G ++ + GP +F V SGAGNNWA G++
Sbjct: 31 RAVLIDMEEGVVNEILKGPLRDLFDETQLVTDVSGAGNNWAVGYHQ 76
>gnl|CDD|100018 cd02189, delta_tubulin, The tubulin superfamily includes five
distinct families, the alpha-, beta-, gamma-, delta-,
and epsilon-tubulins and a sixth family (zeta-tubulin)
which is present only in kinetoplastid protozoa. The
alpha- and beta-tubulins are the major components of
microtubules, while gamma-tubulin plays a major role in
the nucleation of microtubule assembly. The delta- and
epsilon-tubulins are widespread but unlike the alpha,
beta, and gamma-tubulins they are not ubiquitous among
eukaryotes. Delta-tubulin plays an essential role in
forming the triplet microtubules of centrioles and basal
bodies.
Length = 446
Score = 58.5 bits (142), Expect = 1e-11
Identities = 25/91 (27%), Positives = 43/91 (47%), Gaps = 10/91 (10%)
Query: 1 FWEIISDEHGIDPTGAYHGDSDLQLERINVYYN--EASGSKYVPRAILVDLEPGTMDAVR 58
++ ++ E + D + ER E S + + R++LVD+EP +++
Sbjct: 18 LFDTLAKE------ASSSDDEGYKYERDAQERFFSEKSDGQPIARSVLVDMEPKVIESTL 71
Query: 59 SGPFGQI--FRPDNFVFGQSGAGNNWAKGHY 87
S G + N + QSG+GNNWA G+Y
Sbjct: 72 SKSSGGTWKYDKKNVICQQSGSGNNWAYGYY 102
>gnl|CDD|233252 TIGR01056, topB, DNA topoisomerase III, bacteria and conjugative
plasmid. This model describes topoisomerase III from
bacteria and its equivalents encoded on plasmids. The
gene is designated topB if found in the bacterial
chromosome, traE on conjugative plasmid RP4, etc. These
enzymes are involved in the control of DNA topology. DNA
topoisomerase III belongs to the type I topoisomerases,
which are ATP-independent [DNA metabolism, DNA
replication, recombination, and repair].
Length = 660
Score = 27.5 bits (61), Expect = 1.1
Identities = 14/27 (51%), Positives = 14/27 (51%)
Query: 5 ISDEHGIDPTGAYHGDSDLQLERINVY 31
I D H I PTG SDL E NVY
Sbjct: 370 IEDHHAIIPTGNDFNLSDLSEEERNVY 396
>gnl|CDD|233870 TIGR02442, Cob-chelat-sub, cobaltochelatase subunit.
Cobaltochelatase is responsible for the insertion of
cobalt into the corrin ring of coenzyme B12 during its
biosynthesis. Two versions have been well described.
CbiK/CbiX is a monomeric, anaerobic version which acts
early in the biosynthesis (pfam06180). CobNST is a
trimeric, ATP-dependent, aerobic version which acts late
in the biosynthesis (TIGR02257/TIGR01650/TIGR01651). A
number of genomes (actinobacteria, cyanobacteria,
betaproteobacteria and pseudomonads) which apparently
biosynthesize B12, encode a cobN gene but are
demonstrably lacking cobS and cobT. These genomes do,
however contain a homolog (modelled here) of the
magnesium chelatase subunits BchI/BchD family. Aside
from the cyanobacteria (which have a separate magnesium
chelatase trimer), these species do not make chlorins,
so do not have any use for a magnesium chelatase.
Furthermore, in nearly all cases the members of this
family are proximal to either CobN itself or other genes
involved in cobalt transport or B12 biosynthesis.
Length = 633
Score = 27.0 bits (60), Expect = 2.0
Identities = 12/57 (21%), Positives = 17/57 (29%), Gaps = 9/57 (15%)
Query: 50 EPGTMDAVRSGPFGQIFRPDNFVFGQ----SGAGN-----NWAKGHYTEPIPLPVPP 97
E + P G IFR Q +G + ++G Y PP
Sbjct: 369 EEADGQGSSTDPAGDIFRIRVLAPPQARARGASGRRSRTRSDSRGRYVRARRNRGPP 425
>gnl|CDD|145900 pfam02994, Transposase_22, L1 transposable element.
Length = 370
Score = 26.2 bits (57), Expect = 3.4
Identities = 11/31 (35%), Positives = 11/31 (35%), Gaps = 1/31 (3%)
Query: 42 PRAILVDLEPGTMDAVRS-GPFGQIFRPDNF 71
P I D P TM A R Q R F
Sbjct: 281 PIRITPDFSPETMKARREWTDVIQTLREHKF 311
>gnl|CDD|218740 pfam05768, DUF836, Glutaredoxin-like domain (DUF836). These
proteins are related to the pfam00462 family.
Length = 76
Score = 24.9 bits (55), Expect = 4.0
Identities = 9/41 (21%), Positives = 17/41 (41%), Gaps = 3/41 (7%)
Query: 20 DSDLQLERINVYYNEASGSKY---VPRAILVDLEPGTMDAV 57
LERI++ +E ++Y +P LV + +
Sbjct: 26 ALGFDLERIDIDDDEELFARYGLEIPVLALVGILEILSWRL 66
>gnl|CDD|217590 pfam03486, HI0933_like, HI0933-like protein.
Length = 405
Score = 25.6 bits (57), Expect = 5.1
Identities = 6/28 (21%), Positives = 10/28 (35%)
Query: 1 FWEIISDEHGIDPTGAYHGDSDLQLERI 28
+ ++ GIDP S L +
Sbjct: 303 LALFLLEQAGIDPDKKLAQLSKKDLAAL 330
>gnl|CDD|221000 pfam11145, DUF2921, Protein of unknown function (DUF2921). This
eukaryotic family of proteins has no known function.
Length = 871
Score = 25.5 bits (56), Expect = 6.0
Identities = 9/34 (26%), Positives = 15/34 (44%)
Query: 46 LVDLEPGTMDAVRSGPFGQIFRPDNFVFGQSGAG 79
LV L P D +R+ + FR +F++
Sbjct: 803 LVRLLPHVYDLLRAHNYVPYFRGSSFIYANPKMD 836
>gnl|CDD|181154 PRK07869, PRK07869, amidase; Provisional.
Length = 468
Score = 25.3 bits (56), Expect = 6.8
Identities = 8/13 (61%), Positives = 9/13 (69%)
Query: 85 GHYTEPIPLPVPP 97
GH EP+ LPVP
Sbjct: 290 GHRVEPVDLPVPA 302
>gnl|CDD|181609 PRK09009, PRK09009, C factor cell-cell signaling protein;
Provisional.
Length = 235
Score = 25.0 bits (55), Expect = 8.3
Identities = 11/27 (40%), Positives = 14/27 (51%), Gaps = 6/27 (22%)
Query: 49 LEPGTMDAVRSGPF------GQIFRPD 69
L PGT D S PF G++F P+
Sbjct: 178 LHPGTTDTALSKPFQQNVPKGKLFTPE 204
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.316 0.140 0.450
Gapped
Lambda K H
0.267 0.0842 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 5,486,117
Number of extensions: 462585
Number of successful extensions: 313
Number of sequences better than 10.0: 1
Number of HSP's gapped: 303
Number of HSP's successfully gapped: 33
Length of query: 99
Length of database: 10,937,602
Length adjustment: 65
Effective length of query: 34
Effective length of database: 8,054,592
Effective search space: 273856128
Effective search space used: 273856128
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 53 (24.0 bits)