RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy14218
         (99 letters)



>d1tubb1 c.32.1.1 (B:1-245) Tubulin beta-subunit {Pig (Sus scrofa)
           [TaxId: 9823]}
          Length = 243

 Score =  131 bits (330), Expect = 2e-40
 Identities = 84/89 (94%), Positives = 89/89 (100%)

Query: 1   FWEIISDEHGIDPTGAYHGDSDLQLERINVYYNEASGSKYVPRAILVDLEPGTMDAVRSG 60
           FWE+ISDEHGIDPTG+YHGDSDLQLERINVYYNEA+G+KYVPRAILVDLEPGTMD+VRSG
Sbjct: 20  FWEVISDEHGIDPTGSYHGDSDLQLERINVYYNEAAGNKYVPRAILVDLEPGTMDSVRSG 79

Query: 61  PFGQIFRPDNFVFGQSGAGNNWAKGHYTE 89
           PFGQIFRPDNFVFGQSGAGNNWAKGHYTE
Sbjct: 80  PFGQIFRPDNFVFGQSGAGNNWAKGHYTE 108


>d1tuba1 c.32.1.1 (A:1-245) Tubulin alpha-subunit {Pig (Sus scrofa)
           [TaxId: 9823]}
          Length = 245

 Score =  111 bits (279), Expect = 1e-32
 Identities = 37/91 (40%), Positives = 54/91 (59%), Gaps = 2/91 (2%)

Query: 1   FWEIISDEHGIDPTGAYHGDSDLQL--ERINVYYNEASGSKYVPRAILVDLEPGTMDAVR 58
            WE+   EHGI P G    D  +    +  N +++E    K+VPRA+ VDLEP  +D VR
Sbjct: 20  CWELYCLEHGIQPDGQMPSDKTIGGGDDSFNTFFSETGAGKHVPRAVFVDLEPTVIDEVR 79

Query: 59  SGPFGQIFRPDNFVFGQSGAGNNWAKGHYTE 89
           +G + Q+F P+  + G+  A NN+A+GHYT 
Sbjct: 80  TGTYRQLFHPEQLITGKEDAANNYARGHYTI 110


>d2btoa1 c.32.1.1 (A:3-246) Tubulin alpha-subunit {Prosthecobacter
           dejongeii [TaxId: 48465]}
          Length = 244

 Score =  101 bits (253), Expect = 8e-29
 Identities = 33/92 (35%), Positives = 48/92 (52%), Gaps = 4/92 (4%)

Query: 1   FWEIISDEHGIDPTGAYHGDSDLQLERINVYYN---EASGSKYVPRAILVDLEPGTMDAV 57
           FW+ +  EHGIDP               + +++   E+S   YVPRAI+VDLEP  +D V
Sbjct: 20  FWKTVCLEHGIDPLTGQTAPGVAPRGNWSSFFSKLGESSSGSYVPRAIMVDLEPSVIDNV 79

Query: 58  RSGPFGQIFRPDNFVFGQSGAGNNWAKGHYTE 89
           ++   G +F P N +    GAG N+A G+   
Sbjct: 80  KA-TSGSLFNPANLISRTEGAGGNFAVGYLGA 110


>d1p35a_ b.28.1.1 (A:) Baculovirus p35 protein {AcMNPV (Autographa
           californica nuclear polyhedrosis virus) [TaxId: 46015]}
          Length = 299

 Score = 23.0 bits (49), Expect = 9.1
 Identities = 7/16 (43%), Positives = 10/16 (62%)

Query: 26  ERINVYYNEASGSKYV 41
               +YYNEAS +K +
Sbjct: 225 SEKVLYYNEASKNKSM 240


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.316    0.140    0.450 

Gapped
Lambda     K      H
   0.267   0.0566    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 428,253
Number of extensions: 17839
Number of successful extensions: 33
Number of sequences better than 10.0: 1
Number of HSP's gapped: 30
Number of HSP's successfully gapped: 5
Length of query: 99
Length of database: 2,407,596
Length adjustment: 61
Effective length of query: 38
Effective length of database: 1,570,066
Effective search space: 59662508
Effective search space used: 59662508
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 47 (22.2 bits)