BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy14221
(546 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|4AQS|A Chain A, Laminin Beta1 Ln-Le1-4 Structure
Length = 525
Score = 110 bits (275), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 87/272 (31%), Positives = 127/272 (46%), Gaps = 39/272 (14%)
Query: 133 CSPYGSVSDECH-EESGQCNCRIGITGRDCSQC-EPRHILTSRGCASCEDGYIGDHCESC 190
C+P V++E G C CR G +C C + H L R +G + C+ C
Sbjct: 263 CAPVDGVNEEVEGMVHGHCMCRHNTKGLNCELCMDFYHDLPWRPA----EGRNSNACKKC 318
Query: 191 DAGYYGNPTELXXXXXXXXXXXXXXDASTGECVQCRGNTEGARCERCKPLYYGDPRT--- 247
+ + + + S G C C+ NT G CE+CKP Y+ P
Sbjct: 319 NCNEHSSSCHFDMAVFLATG-----NVSGGVCDNCQHNTMGRNCEQCKPFYFQHPERDIR 373
Query: 248 --GDCKPCECNTSGSL-GDECDS--------ISGQCQCKENRAGRTCNLALD-------- 288
C+PC C+ +GS G CD I+GQC+CK + G C++ +
Sbjct: 374 DPNLCEPCTCDPAGSENGGICDGYTDFSVGLIAGQCRCKLHVEGERCDVCKEGFYDLSAE 433
Query: 289 ----CPPCDCDPLGTLSVPQPCHPVSGTCYCQPGVTGDRCDQCDTGYWNFT--VNGCTSC 342
C C C+PLGT+ PC +G CYC+ VTG RCDQC +W + ++GC C
Sbjct: 434 DPYGCKSCACNPLGTIPGGNPCDSETGYCYCKRLVTGQRCDQCLPQHWGLSNDLDGCRPC 493
Query: 343 NCNRDGSLHFSCDVHTGQCSCKPNMTGLACDQ 374
+C+ G+L+ SC +GQCSC P+M G C++
Sbjct: 494 DCDLGGALNNSCSEDSGQCSCLPHMIGRQCNE 525
Score = 96.3 bits (238), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 90/273 (32%), Positives = 123/273 (45%), Gaps = 54/273 (19%)
Query: 220 GECVQCRGNTEGARCERCKPLYYGDPRTGDCKPCECNTSGSLGDECDSISGQCQCKENRA 279
G C+ CR NT+G CE C Y+ P +P E S + +C C E+ +
Sbjct: 279 GHCM-CRHNTKGLNCELCMDFYHDLPW----RPAEGRNSNA--------CKKCNCNEHSS 325
Query: 280 GRTCNLALDCPPCDCDPLGTLSVPQPCHPVSGTC-YCQPGVTGDRCDQCDTGYWNFTV-- 336
++A+ L T +V G C CQ G C+QC Y+
Sbjct: 326 SCHFDMAVF--------LATGNVS------GGVCDNCQHNTMGRNCEQCKPFYFQHPERD 371
Query: 337 ----NGCTSCNCNR---------DGSLHFSCDVHTGQCSCKPNMTGLACDQCTEGHWGLQ 383
N C C C+ DG FS + GQC CK ++ G CD C EG + L
Sbjct: 372 IRDPNLCEPCTCDPAGSENGGICDGYTDFSVGLIAGQCRCKLHVEGERCDVCKEGFYDLS 431
Query: 384 E---LGCASCECNAVGSV--NNSCDQITGQCVCRKGVTGRTCDKCRPDYFGFS--VNGCT 436
GC SC CN +G++ N CD TG C C++ VTG+ CD+C P ++G S ++GC
Sbjct: 432 AEDPYGCKSCACNPLGTIPGGNPCDSETGYCYCKRLVTGQRCDQCLPQHWGLSNDLDGCR 491
Query: 437 ECASCEQSGMV---CSEESGQCVCPPLTRGDLC 466
C C+ G + CSE+SGQC C P G C
Sbjct: 492 PC-DCDLGGALNNSCSEDSGQCSCLPHMIGRQC 523
Score = 79.0 bits (193), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 73/226 (32%), Positives = 91/226 (40%), Gaps = 42/226 (18%)
Query: 309 VSGTCYCQPGVTGDRCDQCDTGYWNF--------TVNGCTSCNCNRDGSL-HFSCDVH-- 357
V G C C+ G C+ C Y + N C CNCN S HF V
Sbjct: 277 VHGHCMCRHNTKGLNCELCMDFYHDLPWRPAEGRNSNACKKCNCNEHSSSCHFDMAVFLA 336
Query: 358 TGQCS------CKPNMTGLACDQCTEGHWGLQELG------CASCECNAVGSVNN----- 400
TG S C+ N G C+QC ++ E C C C+ GS N
Sbjct: 337 TGNVSGGVCDNCQHNTMGRNCEQCKPFYFQHPERDIRDPNLCEPCTCDPAGSENGGICDG 396
Query: 401 ----SCDQITGQCVCRKGVTGRTCDKCRPDYFGFSVN---GCTECASCEQSGMV-----C 448
S I GQC C+ V G CD C+ ++ S GC CA C G + C
Sbjct: 397 YTDFSVGLIAGQCRCKLHVEGERCDVCKEGFYDLSAEDPYGCKSCA-CNPLGTIPGGNPC 455
Query: 449 SEESGQCVCPPLTRGDLCIQCAPNSYGY-RPLLGCQPCRCDLRGSM 493
E+G C C L G C QC P +G L GC+PC CDL G++
Sbjct: 456 DSETGYCYCKRLVTGQRCDQCLPQHWGLSNDLDGCRPCDCDLGGAL 501
Score = 48.1 bits (113), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 47/171 (27%), Positives = 70/171 (40%), Gaps = 35/171 (20%)
Query: 17 NVEGRQCDQCRPGSFSLSADNLAG---CTPCFCFNRSTHCTEAGQYTGNRIGSYSLNLEF 73
N GR C+QC+P F ++ C PC C AG G Y+ +F
Sbjct: 351 NTMGRNCEQCKPFYFQHPERDIRDPNLCEPCT-------CDPAGSENGGICDGYT---DF 400
Query: 74 SVSWIVMRGDTSGIPTQVPDIILIMRVREPGYTGPLCDRCAYGYFGFPSQPNGSCEPCNC 133
SV I + + V G CD C G++ ++ C+ C C
Sbjct: 401 SVGLIAGQCRCK------------LHVE-----GERCDVCKEGFYDLSAEDPYGCKSCAC 443
Query: 134 SPYGSV--SDECHEESGQCNCRIGITGRDCSQCEPRHILTSR---GCASCE 179
+P G++ + C E+G C C+ +TG+ C QC P+H S GC C+
Sbjct: 444 NPLGTIPGGNPCDSETGYCYCKRLVTGQRCDQCLPQHWGLSNDLDGCRPCD 494
Score = 30.4 bits (67), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 16/29 (55%), Positives = 19/29 (65%), Gaps = 1/29 (3%)
Query: 18 VEGRQCDQCRPGSFSLSADNLAGCTPCFC 46
V G++CDQC P + LS D L GC PC C
Sbjct: 468 VTGQRCDQCLPQHWGLSND-LDGCRPCDC 495
>pdb|1KLO|A Chain A, Crystal Structure Of Three Consecutive Laminin-Type
Epidermal Growth Factor-Like (Le) Modules Of Laminin
Gamma1 Chain Harboring The Nidogen Binding Site
Length = 162
Score = 68.9 bits (167), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 49/136 (36%), Positives = 68/136 (50%), Gaps = 24/136 (17%)
Query: 222 CVQCRGNTEGARCERCKPLYYGDPRTGD-----CKPCECNTS---GSLGDECDSISGQC- 272
C C T G RCE C Y+GDP + C+PC+CN + ++G+ C+ ++G+C
Sbjct: 20 CTHCPTGTAGKRCELCDDGYFGDPLGSNGPVRLCRPCQCNDNIDPNAVGN-CNRLTGECL 78
Query: 273 QCKENRAGRTC--------------NLALDCPPCDCDPLGTLSVPQPCHPVSGTCYCQPG 318
+C N AG C N A C C C+P GT+ C+PV+G C C P
Sbjct: 79 KCIYNTAGFYCDRCKEGFFGNPLAPNPADKCKACACNPYGTVQQQSSCNPVTGQCQCLPH 138
Query: 319 VTGDRCDQCDTGYWNF 334
V+G C CD GY+N
Sbjct: 139 VSGRDCGTCDPGYYNL 154
Score = 67.8 bits (164), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 49/133 (36%), Positives = 65/133 (48%), Gaps = 16/133 (12%)
Query: 314 YCQPGVTGDRCDQCDTGYW------NFTVNGCTSCNCNR--DGSLHFSCDVHTGQC-SCK 364
+C G G RC+ CD GY+ N V C C CN D + +C+ TG+C C
Sbjct: 22 HCPTGTAGKRCELCDDGYFGDPLGSNGPVRLCRPCQCNDNIDPNAVGNCNRLTGECLKCI 81
Query: 365 PNMTGLACDQCTEGHWGLQEL-----GCASCECNAVGSVN--NSCDQITGQCVCRKGVTG 417
N G CD+C EG +G C +C CN G+V +SC+ +TGQC C V+G
Sbjct: 82 YNTAGFYCDRCKEGFFGNPLAPNPADKCKACACNPYGTVQQQSSCNPVTGQCQCLPHVSG 141
Query: 418 RTCDKCRPDYFGF 430
R C C P Y+
Sbjct: 142 RDCGTCDPGYYNL 154
Score = 60.1 bits (144), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 41/125 (32%), Positives = 59/125 (47%), Gaps = 16/125 (12%)
Query: 175 CASCEDGYIGDHCESCDAGYYGNPT----------ELXXXXXXXXXXXXXXDASTGECVQ 224
C C G G CE CD GY+G+P + TGEC++
Sbjct: 20 CTHCPTGTAGKRCELCDDGYFGDPLGSNGPVRLCRPCQCNDNIDPNAVGNCNRLTGECLK 79
Query: 225 CRGNTEGARCERCKPLYYGDPRTGD----CKPCECNTSGSLGDE--CDSISGQCQCKENR 278
C NT G C+RCK ++G+P + CK C CN G++ + C+ ++GQCQC +
Sbjct: 80 CIYNTAGFYCDRCKEGFFGNPLAPNPADKCKACACNPYGTVQQQSSCNPVTGQCQCLPHV 139
Query: 279 AGRTC 283
+GR C
Sbjct: 140 SGRDC 144
Score = 54.7 bits (130), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 30/73 (41%), Positives = 42/73 (57%), Gaps = 4/73 (5%)
Query: 106 TGPLCDRCAYGYFGFPSQPNGS--CEPCNCSPYGSVSDE--CHEESGQCNCRIGITGRDC 161
G CDRC G+FG P PN + C+ C C+PYG+V + C+ +GQC C ++GRDC
Sbjct: 85 AGFYCDRCKEGFFGNPLAPNPADKCKACACNPYGTVQQQSSCNPVTGQCQCLPHVSGRDC 144
Query: 162 SQCEPRHILTSRG 174
C+P + G
Sbjct: 145 GTCDPGYYNLQSG 157
Score = 45.1 bits (105), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 41/140 (29%), Positives = 62/140 (44%), Gaps = 20/140 (14%)
Query: 363 CKPNMTGLACDQCTEGHWGLQELG-------CASCECNAVGSVN--NSCDQITGQCV-CR 412
C G C+ C +G++G LG C C+CN N +C+++TG+C+ C
Sbjct: 23 CPTGTAGKRCELCDDGYFG-DPLGSNGPVRLCRPCQCNDNIDPNAVGNCNRLTGECLKCI 81
Query: 413 KGVTGRTCDKCRPDYFG--FSVNGCTECASCE-------QSGMVCSEESGQCVCPPLTRG 463
G CD+C+ +FG + N +C +C Q C+ +GQC C P G
Sbjct: 82 YNTAGFYCDRCKEGFFGNPLAPNPADKCKACACNPYGTVQQQSSCNPVTGQCQCLPHVSG 141
Query: 464 DLCIQCAPNSYGYRPLLGCQ 483
C C P Y + GC+
Sbjct: 142 RDCGTCDPGYYNLQSGQGCE 161
>pdb|1NPE|B Chain B, Crystal Structure Of Nidogen/laminin Complex
Length = 164
Score = 68.2 bits (165), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 49/136 (36%), Positives = 68/136 (50%), Gaps = 24/136 (17%)
Query: 222 CVQCRGNTEGARCERCKPLYYGDPRTGD-----CKPCECNTS---GSLGDECDSISGQC- 272
C C T G RCE C Y+GDP + C+PC+CN + ++G+ C+ ++G+C
Sbjct: 22 CTHCPTGTAGKRCELCDDGYFGDPLGSNGPVRLCRPCQCNDNIDPNAVGN-CNRLTGECL 80
Query: 273 QCKENRAGRTC--------------NLALDCPPCDCDPLGTLSVPQPCHPVSGTCYCQPG 318
+C N AG C N A C C C+P GT+ C+PV+G C C P
Sbjct: 81 KCIYNTAGFYCDRCKEGFFGNPLAPNPADKCKACACNPYGTVQQQSSCNPVTGQCQCLPH 140
Query: 319 VTGDRCDQCDTGYWNF 334
V+G C CD GY+N
Sbjct: 141 VSGRDCGTCDPGYYNL 156
Score = 67.8 bits (164), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 49/133 (36%), Positives = 65/133 (48%), Gaps = 16/133 (12%)
Query: 314 YCQPGVTGDRCDQCDTGYW------NFTVNGCTSCNCNR--DGSLHFSCDVHTGQC-SCK 364
+C G G RC+ CD GY+ N V C C CN D + +C+ TG+C C
Sbjct: 24 HCPTGTAGKRCELCDDGYFGDPLGSNGPVRLCRPCQCNDNIDPNAVGNCNRLTGECLKCI 83
Query: 365 PNMTGLACDQCTEGHWGLQEL-----GCASCECNAVGSVN--NSCDQITGQCVCRKGVTG 417
N G CD+C EG +G C +C CN G+V +SC+ +TGQC C V+G
Sbjct: 84 YNTAGFYCDRCKEGFFGNPLAPNPADKCKACACNPYGTVQQQSSCNPVTGQCQCLPHVSG 143
Query: 418 RTCDKCRPDYFGF 430
R C C P Y+
Sbjct: 144 RDCGTCDPGYYNL 156
Score = 60.1 bits (144), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 41/125 (32%), Positives = 59/125 (47%), Gaps = 16/125 (12%)
Query: 175 CASCEDGYIGDHCESCDAGYYGNPT----------ELXXXXXXXXXXXXXXDASTGECVQ 224
C C G G CE CD GY+G+P + TGEC++
Sbjct: 22 CTHCPTGTAGKRCELCDDGYFGDPLGSNGPVRLCRPCQCNDNIDPNAVGNCNRLTGECLK 81
Query: 225 CRGNTEGARCERCKPLYYGDPRTGD----CKPCECNTSGSLGDE--CDSISGQCQCKENR 278
C NT G C+RCK ++G+P + CK C CN G++ + C+ ++GQCQC +
Sbjct: 82 CIYNTAGFYCDRCKEGFFGNPLAPNPADKCKACACNPYGTVQQQSSCNPVTGQCQCLPHV 141
Query: 279 AGRTC 283
+GR C
Sbjct: 142 SGRDC 146
Score = 54.7 bits (130), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 30/73 (41%), Positives = 42/73 (57%), Gaps = 4/73 (5%)
Query: 106 TGPLCDRCAYGYFGFPSQPNGS--CEPCNCSPYGSVSDE--CHEESGQCNCRIGITGRDC 161
G CDRC G+FG P PN + C+ C C+PYG+V + C+ +GQC C ++GRDC
Sbjct: 87 AGFYCDRCKEGFFGNPLAPNPADKCKACACNPYGTVQQQSSCNPVTGQCQCLPHVSGRDC 146
Query: 162 SQCEPRHILTSRG 174
C+P + G
Sbjct: 147 GTCDPGYYNLQSG 159
Score = 44.7 bits (104), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 41/140 (29%), Positives = 62/140 (44%), Gaps = 20/140 (14%)
Query: 363 CKPNMTGLACDQCTEGHWGLQELG-------CASCECNAVGSVN--NSCDQITGQCV-CR 412
C G C+ C +G++G LG C C+CN N +C+++TG+C+ C
Sbjct: 25 CPTGTAGKRCELCDDGYFG-DPLGSNGPVRLCRPCQCNDNIDPNAVGNCNRLTGECLKCI 83
Query: 413 KGVTGRTCDKCRPDYFG--FSVNGCTECASCE-------QSGMVCSEESGQCVCPPLTRG 463
G CD+C+ +FG + N +C +C Q C+ +GQC C P G
Sbjct: 84 YNTAGFYCDRCKEGFFGNPLAPNPADKCKACACNPYGTVQQQSSCNPVTGQCQCLPHVSG 143
Query: 464 DLCIQCAPNSYGYRPLLGCQ 483
C C P Y + GC+
Sbjct: 144 RDCGTCDPGYYNLQSGQGCE 163
>pdb|4AQT|A Chain A, Laminin Gamma1 Ln-Le1-2 Structure
Length = 375
Score = 35.0 bits (79), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 15/33 (45%), Positives = 20/33 (60%)
Query: 220 GECVQCRGNTEGARCERCKPLYYGDPRTGDCKP 252
G C CR NT+GA+CERC+ ++ T C P
Sbjct: 334 GHCTNCRDNTDGAKCERCRENFFRLGNTEACSP 366
>pdb|1TLE|A Chain A, Le (Laminin-Type Egf-Like) Module Giii4 In Solution At Ph
3.5 And 290 K, Nmr, 14 Structures
Length = 58
Score = 33.5 bits (75), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 14/27 (51%), Positives = 20/27 (74%)
Query: 219 TGECVQCRGNTEGARCERCKPLYYGDP 245
TGEC++C NT G C+RCK ++G+P
Sbjct: 21 TGECLKCIYNTAGFYCDRCKEGFFGNP 47
Score = 29.6 bits (65), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 17/42 (40%), Positives = 23/42 (54%), Gaps = 1/42 (2%)
Query: 341 SCNCNRDGSLHFSCDVHTGQC-SCKPNMTGLACDQCTEGHWG 381
CN N D + +C+ TG+C C N G CD+C EG +G
Sbjct: 4 QCNDNIDPNAVGNCNRLTGECLKCIYNTAGFYCDRCKEGFFG 45
>pdb|2GY5|A Chain A, Tie2 Ligand-Binding Domain Crystal Structure
pdb|2GY7|B Chain B, Angiopoietin-2TIE2 COMPLEX CRYSTAL STRUCTURE
Length = 423
Score = 33.1 bits (74), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 37/115 (32%), Positives = 51/115 (44%), Gaps = 15/115 (13%)
Query: 367 MTGLACDQCTEGHWGLQ-ELGCASCECNAVGSVNNSCDQITGQCVCRKGVTGRTCDK-CR 424
T L +C WG + C +C N V C + TG+C+C G GRTC+K C
Sbjct: 181 FTRLIVRRCEAQKWGPECNHLCTACMNNGV------CHEDTGECICPPGFMGRTCEKACE 234
Query: 425 PDYFGFSVNGCTE-CASCE--QSGMVCSEESGQCVCPPLTRGDLCIQ-CAPNSYG 475
FG + C E C+ E +S + C + C C +G C + C P YG
Sbjct: 235 LHTFGRT---CKERCSGQEGCKSYVFCLPDPYGCSCATGWKGLQCNEACHPGFYG 286
Score = 30.0 bits (66), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 23/76 (30%), Positives = 30/76 (39%), Gaps = 22/76 (28%)
Query: 143 CHEESGQCNCRIGITGRDCSQCEPRHIL---------TSRGCA------------SCEDG 181
CHE++G+C C G GR C + H GC SC G
Sbjct: 211 CHEDTGECICPPGFMGRTCEKACELHTFGRTCKERCSGQEGCKSYVFCLPDPYGCSCATG 270
Query: 182 YIGDHC-ESCDAGYYG 196
+ G C E+C G+YG
Sbjct: 271 WKGLQCNEACHPGFYG 286
>pdb|3T5O|A Chain A, Crystal Structure Of Human Complement Component C6
pdb|4A5W|B Chain B, Crystal Structure Of C5b6
pdb|4E0S|B Chain B, Crystal Structure Of C5b-6
Length = 913
Score = 28.9 bits (63), Expect = 7.4, Method: Compositional matrix adjust.
Identities = 21/63 (33%), Positives = 27/63 (42%), Gaps = 3/63 (4%)
Query: 381 GLQELGCASCECNAVGSVNNSCDQITGQ---CVCRKGVTGRTCDKCRPDYFGFSVNGCTE 437
LQE C NN ++G CVC+ G G C+K PDY +V+G
Sbjct: 489 ALQEYAAKFDPCQCAPCPNNGRPTLSGTECLCVCQSGTYGENCEKQSPDYKSNAVDGQWG 548
Query: 438 CAS 440
C S
Sbjct: 549 CWS 551
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.322 0.139 0.484
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 17,722,465
Number of Sequences: 62578
Number of extensions: 770147
Number of successful extensions: 1789
Number of sequences better than 100.0: 90
Number of HSP's better than 100.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 81
Number of HSP's that attempted gapping in prelim test: 1474
Number of HSP's gapped (non-prelim): 272
length of query: 546
length of database: 14,973,337
effective HSP length: 104
effective length of query: 442
effective length of database: 8,465,225
effective search space: 3741629450
effective search space used: 3741629450
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 54 (25.4 bits)