RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy14221
(546 letters)
>4aqs_A Laminin subunit beta-1; cell adhesion; HET: NAG BMA MAN FUL; 3.11A
{Mus musculus}
Length = 525
Score = 150 bits (379), Expect = 2e-39
Identities = 88/338 (26%), Positives = 121/338 (35%), Gaps = 63/338 (18%)
Query: 115 YGYFGFPSQPNGSCEPCNCSPYGSVSDECHEESGQCNCRIGITGRDCSQCEPRHILTSRG 174
S Y +V D + C G
Sbjct: 221 VKLHTLGDNLLDSRMEIREKYYYAVYDMVVRGNCFCYGH-ASECAPVDGVNEEVEGMVHG 279
Query: 175 CASCEDGYIGDHCESCDAGYYGNPTELGGS-----CVPCSCGGG-------------PCD 216
C G +CE C Y+ P C C+C +
Sbjct: 280 HCMCRHNTKGLNCELCMDFYHDLPWRPAEGRNSNACKKCNCNEHSSSCHFDMAVFLATGN 339
Query: 217 ASTGECVQCRGNTEGARCERCKPLYYGDPRTG-----DCKPCECNTSGSLGDECDSISGQ 271
S G C C+ NT G CE+CKP Y+ P C+PC C+ +GS
Sbjct: 340 VSGGVCDNCQHNTMGRNCEQCKPFYFQHPERDIRDPNLCEPCTCDPAGSENGGI------ 393
Query: 272 CQCKENRAGRTCNLALDCPPCDCDPLGTLSVPQPCHPVSGTCYCQPGVTGDRCDQCDTGY 331
CD + ++G C C+ V G+RCD C G+
Sbjct: 394 --------------------CDGYTDFS------VGLIAGQCRCKLHVEGERCDVCKEGF 427
Query: 332 WNFT---VNGCTSCNCNRDGSLHF--SCDVHTGQCSCKPNMTGLACDQCTEGHWGLQE-- 384
++ + GC SC CN G++ CD TG C CK +TG CDQC HWGL
Sbjct: 428 YDLSAEDPYGCKSCACNPLGTIPGGNPCDSETGYCYCKRLVTGQRCDQCLPQHWGLSNDL 487
Query: 385 LGCASCECNAVGSVNNSCDQITGQCVCRKGVTGRTCDK 422
GC C+C+ G++NNSC + +GQC C + GR C++
Sbjct: 488 DGCRPCDCDLGGALNNSCSEDSGQCSCLPHMIGRQCNE 525
Score = 127 bits (321), Expect = 1e-31
Identities = 81/280 (28%), Positives = 109/280 (38%), Gaps = 35/280 (12%)
Query: 204 SCVPCSCGGGPCDASTGECVQCRGNTEGARCERCKPLYYGDP-------RTGDCKPCECN 256
C P + CR NT+G CE C Y+ P + CK C CN
Sbjct: 262 ECAPVDGVNEEVEGMVHGHCMCRHNTKGLNCELCMDFYHDLPWRPAEGRNSNACKKCNCN 321
Query: 257 TSGSLGDECDSISGQCQCKENRAGRTCNLALDCPPCDCDPLGTLSVPQPCHPVSGTCYCQ 316
S C N +G C +C + C P +
Sbjct: 322 EHSS---SCHFDMAVFLATGNVSGGVC--------DNCQHNTMGRNCEQCKPFYFQHPER 370
Query: 317 PGVTGDRCDQCDTGYWNFTVNGCTSCNCNRDGSLHFSCDVHTGQCSCKPNMTGLACDQCT 376
+ C+ C + DG FS + GQC CK ++ G CD C
Sbjct: 371 DIRDPNLCEPCTCDPA------GSENGGICDGYTDFSVGLIAGQCRCKLHVEGERCDVCK 424
Query: 377 EGHWGLQE---LGCASCECNAVGSVNN--SCDQITGQCVCRKGVTGRTCDKCRPDYFGFS 431
EG + L GC SC CN +G++ CD TG C C++ VTG+ CD+C P ++G S
Sbjct: 425 EGFYDLSAEDPYGCKSCACNPLGTIPGGNPCDSETGYCYCKRLVTGQRCDQCLPQHWGLS 484
Query: 432 VN--GCTECASCEQSGMV---CSEESGQCVCPPLTRGDLC 466
+ GC C C+ G + CSE+SGQC C P G C
Sbjct: 485 NDLDGCRPC-DCDLGGALNNSCSEDSGQCSCLPHMIGRQC 523
Score = 109 bits (273), Expect = 1e-25
Identities = 74/285 (25%), Positives = 105/285 (36%), Gaps = 61/285 (21%)
Query: 16 SNVEGRQCDQCRPGSFSL-----SADNLAGCTPCFCFNRSTHCTEAGQYTGNRIGSYSLN 70
N +G C+ C L N C C C S+ C
Sbjct: 285 HNTKGLNCELCMDFYHDLPWRPAEGRNSNACKKCNCNEHSSSC----------------- 327
Query: 71 LEFSVSWIVMRGDTSGIPTQVPDIILIMRVREPGYTGPLCDRCAYGYFGFPSQP---NGS 127
F ++ + G+ SG + G C++C YF P +
Sbjct: 328 -HFDMAVFLATGNVSGGVCDNC---------QHNTMGRNCEQCKPFYFQHPERDIRDPNL 377
Query: 128 CEPCNCSPYGSVSDECHEESGQCNCRIGITGRDCSQCEPRHILTSRGCASCEDGYIGDHC 187
CEPC C P GS + + + G QC C+ G+ C
Sbjct: 378 CEPCTCDPAGSENGGICDGYTDFSV-----GLIAGQCR------------CKLHVEGERC 420
Query: 188 ESCDAGYYGNPTELGGSCVPCSC-------GGGPCDASTGECVQCRGNTEGARCERCKPL 240
+ C G+Y E C C+C GG PCD+ TG C C+ G RC++C P
Sbjct: 421 DVCKEGFYDLSAEDPYGCKSCACNPLGTIPGGNPCDSETGYC-YCKRLVTGQRCDQCLPQ 479
Query: 241 YYGDPRTGD-CKPCECNTSGSLGDECDSISGQCQCKENRAGRTCN 284
++G D C+PC+C+ G+L + C SGQC C + GR CN
Sbjct: 480 HWGLSNDLDGCRPCDCDLGGALNNSCSEDSGQCSCLPHMIGRQCN 524
Score = 100 bits (251), Expect = 9e-23
Identities = 75/270 (27%), Positives = 98/270 (36%), Gaps = 54/270 (20%)
Query: 267 SISGQCQCKENRAGRTCNLALDCPPCDCDPLGTLSVPQPCHPVSGTCYCQPGVTGDRCDQ 326
+ G C C A +C P D + V G C C+ G C+
Sbjct: 249 VVRGNCFC--------YGHASECAPVDGVN------EEVEGMVHGHCMCRHNTKGLNCEL 294
Query: 327 CDTGYWN--------FTVNGCTSCNCNRDGSLHF--------SCDVHTGQC-SCKPNMTG 369
C Y + N C CNCN S + +V G C +C+ N G
Sbjct: 295 CMDFYHDLPWRPAEGRNSNACKKCNCNEHSSSCHFDMAVFLATGNVSGGVCDNCQHNTMG 354
Query: 370 LACDQCTEGHWGLQELG------CASCECNAVGSVNN---------SCDQITGQCVCRKG 414
C+QC ++ E C C C+ GS N S I GQC C+
Sbjct: 355 RNCEQCKPFYFQHPERDIRDPNLCEPCTCDPAGSENGGICDGYTDFSVGLIAGQCRCKLH 414
Query: 415 VTGRTCDKCRPDYFGFSVNGCTECASCE-------QSGMVCSEESGQCVCPPLTRGDLCI 467
V G CD C+ ++ S C SC G C E+G C C L G C
Sbjct: 415 VEGERCDVCKEGFYDLSAEDPYGCKSCACNPLGTIPGGNPCDSETGYCYCKRLVTGQRCD 474
Query: 468 QCAPNSYGYR-PLLGCQPCRCDLRGSMRAQ 496
QC P +G L GC+PC CDL G++
Sbjct: 475 QCLPQHWGLSNDLDGCRPCDCDLGGALNNS 504
Score = 69.3 bits (169), Expect = 1e-12
Identities = 39/149 (26%), Positives = 61/149 (40%), Gaps = 39/149 (26%)
Query: 17 NVEGRQCDQCRPGSFSLSADNLAGCTPCFCFNRSTHCTEAG--QYTGNRIGSYSLNLEFS 74
+VEG +CD C+ G + LSA++ GC C C T TG
Sbjct: 414 HVEGERCDVCKEGFYDLSAEDPYGCKSCACNPLGTIPGGNPCDSETGYCYC--------- 464
Query: 75 VSWIVMRGDTSGIPTQVPDIILIMRVREPGYTGPLCDRCAYGYFGFPSQPNGSCEPCNCS 134
+ TG CD+C ++G + +G C PC+C
Sbjct: 465 ---------------------------KRLVTGQRCDQCLPQHWGLSNDLDG-CRPCDCD 496
Query: 135 PYGSVSDECHEESGQCNCRIGITGRDCSQ 163
G++++ C E+SGQC+C + GR C++
Sbjct: 497 LGGALNNSCSEDSGQCSCLPHMIGRQCNE 525
>1klo_A Laminin; glycoprotein; 2.10A {Mus musculus} SCOP: g.3.11.2 g.3.11.2
g.3.11.2 PDB: 1npe_B 1tle_A
Length = 162
Score = 103 bits (259), Expect = 3e-26
Identities = 54/171 (31%), Positives = 70/171 (40%), Gaps = 45/171 (26%)
Query: 175 CASCEDGYIGDHCESCDAGYYGNPTELGGS---CVPCSCGG-------GPCDASTGECVQ 224
C C G G CE CD GY+G+P G C PC C G C+ TGEC++
Sbjct: 20 CTHCPTGTAGKRCELCDDGYFGDPLGSNGPVRLCRPCQCNDNIDPNAVGNCNRLTGECLK 79
Query: 225 CRGNTEGARCERCKPLYYGDPRTGDCKPCECNTSGSLGDECDSISGQCQCKENRAGRTCN 284
C NT G C+RCK ++G+P +
Sbjct: 80 CIYNTAGFYCDRCKEGFFGNPLAPNPADK------------------------------- 108
Query: 285 LALDCPPCDCDPLGTLSVPQPCHPVSGTCYCQPGVTGDRCDQCDTGYWNFT 335
C C C+P GT+ C+PV+G C C P V+G C CD GY+N
Sbjct: 109 ----CKACACNPYGTVQQQSSCNPVTGQCQCLPHVSGRDCGTCDPGYYNLQ 155
Score = 89.9 bits (223), Expect = 3e-21
Identities = 52/141 (36%), Positives = 67/141 (47%), Gaps = 17/141 (12%)
Query: 313 CYCQPGVTGDRCDQCDTGYW------NFTVNGCTSCNCN--RDGSLHFSCDVHTGQC-SC 363
+C G G RC+ CD GY+ N V C C CN D + +C+ TG+C C
Sbjct: 21 THCPTGTAGKRCELCDDGYFGDPLGSNGPVRLCRPCQCNDNIDPNAVGNCNRLTGECLKC 80
Query: 364 KPNMTGLACDQCTEGHWG-----LQELGCASCECNAVGSVNN--SCDQITGQCVCRKGVT 416
N G CD+C EG +G C +C CN G+V SC+ +TGQC C V+
Sbjct: 81 IYNTAGFYCDRCKEGFFGNPLAPNPADKCKACACNPYGTVQQQSSCNPVTGQCQCLPHVS 140
Query: 417 GRTCDKCRPDYFGF-SVNGCT 436
GR C C P Y+ S GC
Sbjct: 141 GRDCGTCDPGYYNLQSGQGCE 161
Score = 74.8 bits (184), Expect = 5e-16
Identities = 42/161 (26%), Positives = 62/161 (38%), Gaps = 19/161 (11%)
Query: 342 CNCNRDGSLHFSCDVHTGQC-SCKPNMTGLACDQCTEGHWG------LQELGCASCECNA 394
C C S C C G C+ C +G++G C C+CN
Sbjct: 1 CPCPGGSSCAIVPKTKEVVCTHCPTGTAGKRCELCDDGYFGDPLGSNGPVRLCRPCQCND 60
Query: 395 VGSVN--NSCDQITGQCV-CRKGVTGRTCDKCRPDYFGFSVNGCTE--CASCE------- 442
N +C+++TG+C+ C G CD+C+ +FG + C +C
Sbjct: 61 NIDPNAVGNCNRLTGECLKCIYNTAGFYCDRCKEGFFGNPLAPNPADKCKACACNPYGTV 120
Query: 443 QSGMVCSEESGQCVCPPLTRGDLCIQCAPNSYGYRPLLGCQ 483
Q C+ +GQC C P G C C P Y + GC+
Sbjct: 121 QQQSSCNPVTGQCQCLPHVSGRDCGTCDPGYYNLQSGQGCE 161
Score = 72.5 bits (178), Expect = 3e-15
Identities = 42/164 (25%), Positives = 57/164 (34%), Gaps = 40/164 (24%)
Query: 102 EPGYTGPLCDRCAYGYFGFPSQPNGS---CEPCNCSPYG--SVSDECHEESGQCNCRIGI 156
G G C+ C GYFG P NG C PC C+ + C+ +G+C
Sbjct: 24 PTGTAGKRCELCDDGYFGDPLGSNGPVRLCRPCQCNDNIDPNAVGNCNRLTGECLK---- 79
Query: 157 TGRDCSQCEPRHILTSRGCASCEDGYIGDHCESCDAGYYGNPT--ELGGSCVPCSC---- 210
C G +C+ C G++GNP C C+C
Sbjct: 80 ---------------------CIYNTAGFYCDRCKEGFFGNPLAPNPADKCKACACNPYG 118
Query: 211 ---GGGPCDASTGECVQCRGNTEGARCERCKPLYYGDPRTGDCK 251
C+ TG+C QC + G C C P YY C+
Sbjct: 119 TVQQQSSCNPVTGQC-QCLPHVSGRDCGTCDPGYYNLQSGQGCE 161
Score = 50.2 bits (120), Expect = 2e-07
Identities = 28/125 (22%), Positives = 43/125 (34%), Gaps = 16/125 (12%)
Query: 390 CECNAVGSVNNSCDQITGQCV-CRKGVTGRTCDKCRPDYFGFSVNGCTECASCE------ 442
C C S C C G G+ C+ C YFG + C
Sbjct: 1 CPCPGGSSCAIVPKTKEVVCTHCPTGTAGKRCELCDDGYFGDPLGSNGPVRLCRPCQCND 60
Query: 443 ----QSGMVCSEESGQCV-CPPLTRGDLCIQCAPNSYGY----RPLLGCQPCRCDLRGSM 493
+ C+ +G+C+ C T G C +C +G P C+ C C+ G++
Sbjct: 61 NIDPNAVGNCNRLTGECLKCIYNTAGFYCDRCKEGFFGNPLAPNPADKCKACACNPYGTV 120
Query: 494 RAQGI 498
+ Q
Sbjct: 121 QQQSS 125
>4aqt_A Laminin subunit gamma-1; cell adhesion; HET: NAG BMA; 3.20A {Mus
musculus}
Length = 375
Score = 77.9 bits (191), Expect = 1e-15
Identities = 35/172 (20%), Positives = 54/172 (31%), Gaps = 11/172 (6%)
Query: 89 TQVPDIILIMRVREPGYTGPLCDRCAYGYFGFPSQPNGSCEPCNCSPYGSVSDECHEESG 148
T + + R+ G + Y+ S C C+ + S + +
Sbjct: 214 TATDIRVTLNRLNTFGDEVFNEPKVLKSYYYAISDFA-VGGRCKCNGHASECVKNEFDKL 272
Query: 149 QCNCRIGITGRDCSQCEPRHILTSRGCASCEDGYIGDHCESCDAGYYGNPTELGGSCVPC 208
CNC+ G DC +C P A+ E C + C
Sbjct: 273 MCNCKHNTYGVDCEKCLPFFNDRPWRRATAESASECLPC---------DCNGRSQECY-F 322
Query: 209 SCGGGPCDASTGECVQCRGNTEGARCERCKPLYYGDPRTGDCKPCECNTSGS 260
G C CR NT+GA+CERC+ ++ T C P +
Sbjct: 323 DPELYRSTGHGGHCTNCRDNTDGAKCERCRENFFRLGNTEACSPAAAHHHHH 374
Score = 67.1 bits (163), Expect = 3e-12
Identities = 29/189 (15%), Positives = 52/189 (27%), Gaps = 36/189 (19%)
Query: 167 RHILTSRGCASCEDGYIGDHCESCDAGYYGNPTELGGSCVPCSCGGGPC--DASTGECVQ 224
I + + + + + + YY G C+ C +
Sbjct: 216 TDIRVTLNRLNTFGDEVFNEPKVLKSYYYAISDFAVGGRCKCNGHASECVKNEFDKLMCN 275
Query: 225 CRGNTEGARCERCKPLYYGDP--RTGDCKPCECNTSGSLGDECDSISGQCQCKENRAGRT 282
C+ NT G CE+C P + P R EC +C+ S +C T
Sbjct: 276 CKHNTYGVDCEKCLPFFNDRPWRRATAESASECLPC-----DCNGRSQECYFDPELYRST 330
Query: 283 CNLALDCPPCDCDPLGTLSVPQPCHPVSGTCY-CQPGVTGDRCDQCDTGYWNFT-VNGCT 340
+ G C C+ G +C++C ++ C+
Sbjct: 331 GH-------------------------GGHCTNCRDNTDGAKCERCRENFFRLGNTEACS 365
Query: 341 SCNCNRDGS 349
+
Sbjct: 366 PAAAHHHHH 374
Score = 64.0 bits (155), Expect = 4e-11
Identities = 26/145 (17%), Positives = 43/145 (29%), Gaps = 17/145 (11%)
Query: 311 GTCYCQPGVTGDRCDQCDTGYWNFT-VNGCTSCNCNRDGSLHFSCDVHTGQCSCKPNMTG 369
+ + Y+ + C CN S + C+CK N G
Sbjct: 223 NRLNTFGDEVFNEPKVLKSYYYAISDFAVGGRCKCNGHASECVKNEFDKLMCNCKHNTYG 282
Query: 370 LACDQCTEGHWGL--------QELGCASCECNAVGSVNNSCDQI------TGQCV-CRKG 414
+ C++C C C+CN ++ G C CR
Sbjct: 283 VDCEKCLPFFNDRPWRRATAESASECLPCDCNGRSQECYFDPELYRSTGHGGHCTNCRDN 342
Query: 415 VTGRTCDKCRPDYFGFS-VNGCTEC 438
G C++CR ++F C+
Sbjct: 343 TDGAKCERCRENFFRLGNTEACSPA 367
Score = 62.9 bits (152), Expect = 8e-11
Identities = 25/155 (16%), Positives = 43/155 (27%), Gaps = 18/155 (11%)
Query: 356 VHTGQCSCKPNMTGLACDQCTEGHWGLQELG-CASCECNAVGSVNNSCDQITGQCVCRKG 414
V + + + ++ + + C+CN S + C C+
Sbjct: 220 VTLNRLNTFGDEVFNEPKVLKSYYYAISDFAVGGRCKCNGHASECVKNEFDKLMCNCKHN 279
Query: 415 VTGRTCDKCRPDYFGFSVNGCTECASCEQSGMVCSEESGQCV-----------------C 457
G C+KC P + T ++ E C+ S +C C
Sbjct: 280 TYGVDCEKCLPFFNDRPWRRATAESASECLPCDCNGRSQECYFDPELYRSTGHGGHCTNC 339
Query: 458 PPLTRGDLCIQCAPNSYGYRPLLGCQPCRCDLRGS 492
T G C +C N + C P
Sbjct: 340 RDNTDGAKCERCRENFFRLGNTEACSPAAAHHHHH 374
Score = 39.0 bits (90), Expect = 0.003
Identities = 22/128 (17%), Positives = 35/128 (27%), Gaps = 36/128 (28%)
Query: 16 SNVEGRQCDQCRPGSFSL-----SADNLAGCTPCFCFNRSTHCTEAGQYTGNRIGSYSLN 70
N G C++C P +A++ + C PC C RS C +
Sbjct: 278 HNTYGVDCEKCLPFFNDRPWRRATAESASECLPCDCNGRSQEC------------YFDPE 325
Query: 71 LEFSVSWIVMRGDTSGIPTQVPDIILIMRVREPGYTGPLCDRCAYGYFGFPSQPNGSCEP 130
L S + G C+RC +F + +C P
Sbjct: 326 LYRSTGHGGHCTNC-----------------RDNTDGAKCERCRENFFRLGNT--EACSP 366
Query: 131 CNCSPYGS 138
+
Sbjct: 367 AAAHHHHH 374
Score = 33.2 bits (75), Expect = 0.21
Identities = 10/36 (27%), Positives = 16/36 (44%), Gaps = 2/36 (5%)
Query: 17 NVEGRQCDQCRPGSFSLSADNLAGCTPCFCFNRSTH 52
N +G +C++CR F L C+P + H
Sbjct: 342 NTDGAKCERCRENFFRLGNTE--ACSPAAAHHHHHH 375
>2gy5_A Angiopoietin-1 receptor; ligand-binding domain, transferase; HET:
NAG NDG; 2.90A {Homo sapiens} PDB: 2gy7_B*
Length = 423
Score = 74.7 bits (183), Expect = 1e-14
Identities = 47/260 (18%), Positives = 68/260 (26%), Gaps = 21/260 (8%)
Query: 205 CVPCSCGGGPCDASTGECVQCRGNTEGARCERCKPLYYGDPRTGDCKPCECNTSGSLGDE 264
G A RC+ +G C C N
Sbjct: 157 PHAQPQDAGVYSARYIGGNLFTSAFTRLIVRRCEAQKWGPECNHLCTACMNNGV------ 210
Query: 265 CDSISGQCQCKENRAGRTCNLALD------CPPCDCDPLGTLSVPQPCHPVSGTCYCQPG 318
C +G+C C GRTC A + C C P C C G
Sbjct: 211 CHEDTGECICPPGFMGRTCEKACELHTFGRTCKERCSGQEGCKSYVFCLPDPYGCSCATG 270
Query: 319 VTGDRCDQ-CDTGYWNFTVNGCTSCNCNRDGSLHFSCDVHTGQCSCKPNMTGLACDQCTE 377
G +C++ C G++ + C+CN C C P GL C++
Sbjct: 271 WKGLQCNEACHPGFYG--PDCKLRCSCNNGE-----MCDRFQGCLCSPGWQGLQCEREGI 323
Query: 378 GHWGLQELGCASCECNAVGSVNNSCDQITGQCVCRKGVTGRTCDKCRPDYFGFSVNGCTE 437
+ + G N C + +T D F+
Sbjct: 324 PRMTPKIVDLPDHIEVNSGKFNPICKASGWPLPTNEEMTLVKPDGTVLHPKDFNHTDHFS 383
Query: 438 CASCEQSGMVCSEESGQCVC 457
A + +SG VC
Sbjct: 384 VA-IFTIHRILPPDSGVWVC 402
Score = 69.0 bits (168), Expect = 1e-12
Identities = 48/284 (16%), Positives = 73/284 (25%), Gaps = 19/284 (6%)
Query: 140 SDECHEESGQCNCRIGITGRDCSQCEP-RHILTSRGCASCEDGYIGDHCESCDAGYYGNP 198
S + + + + + G + C+A +G
Sbjct: 138 SFIHSVPRHEVPDILEVHLPHAQPQDAGVYSARYIGGNLFTSAFTRLIVRRCEAQKWGPE 197
Query: 199 TELGGSCVPCSCGGGPCDASTGECVQCRGNTEGARCER-CKPLYYGDPRTGDCKPCECNT 257
C C G C TGEC+ C G CE+ C+ +G + C
Sbjct: 198 CN--HLCTAC-MNNGVCHEDTGECI-CPPGFMGRTCEKACELHTFGRT---CKERCSGQE 250
Query: 258 SGSLGDECDSISGQCQCKENRAGRTCNLALDCPPCDCDPLGTLSVP----QPCHPVSGTC 313
C C C G CN C P P L + C G C
Sbjct: 251 GCKSYVFCLPDPYGCSCATGWKGLQCNE--ACHPGFYGPDCKLRCSCNNGEMCDRFQG-C 307
Query: 314 YCQPGVTGDRCDQCDTGYWNFTVNGCTSCNCNRDGSLHFSCDVHTGQCSCKPNMTGLACD 373
C PG G +C++ + G + C MT + D
Sbjct: 308 LCSPGWQGLQCEREGIPRMTPKIVDLPDHIEVNSGKFNPICKASGWPLPTNEEMTLVKPD 367
Query: 374 QCTEGHWGLQELGCASCECNAVGSVNNSCDQITGQCVCRKGVTG 417
S A+ +++ +G VC
Sbjct: 368 GTVLHPKDFNHTDHFSV---AIFTIHRILPPDSGVWVCSVNTVA 408
Score = 64.3 bits (156), Expect = 3e-11
Identities = 38/220 (17%), Positives = 56/220 (25%), Gaps = 17/220 (7%)
Query: 270 GQCQCKENRAGRTCNLALDCPPCDCDPLGTLSVPQPCHPVSGTCYCQPGVTGDRCDQCDT 329
G R L + P G G T +C+
Sbjct: 137 GSFIHSVPRHEVPDILEVHLPHAQPQDAGV-----YSARYIGGNLFTSAFTRLIVRRCEA 191
Query: 330 GYWNFTVNGCTSCNCNRDGSLHFSCDVHTGQCSCKPNMTGLACDQ-CTEGHWGLQELGCA 388
W N + N + C TG+C C P G C++ C +G
Sbjct: 192 QKWGPECNHLCTACMN-----NGVCHEDTGECICPPGFMGRTCEKACELHTFGRTC--KE 244
Query: 389 SCECNAVGSVNNSCDQITGQCVCRKGVTGRTCDKCRPDYFGFSVNGCTECASCEQSGMVC 448
C C C C G G C++ GF C SC
Sbjct: 245 RCSGQEGCKSYVFCLPDPYGCSCATGWKGLQCNEACHP--GFYGPDCKLRCSCNNGE--M 300
Query: 449 SEESGQCVCPPLTRGDLCIQCAPNSYGYRPLLGCQPCRCD 488
+ C+C P +G C + + + +
Sbjct: 301 CDRFQGCLCSPGWQGLQCEREGIPRMTPKIVDLPDHIEVN 340
>3k6s_B Integrin beta-2; cell receptor, adhesion molecule, cell adhesion,
pyrrolidone carboxylic acid; HET: NAG MAN; 3.50A {Homo
sapiens} PDB: 3k71_B* 3k72_B*
Length = 687
Score = 74.0 bits (181), Expect = 5e-14
Identities = 58/349 (16%), Positives = 79/349 (22%), Gaps = 50/349 (14%)
Query: 103 PGYTGPLCDRCA--------YGYFGFPSQPNGSCEPCN--CSPYGSVSDECHEESGQCNC 152
G T R F + + G + QC C
Sbjct: 366 NGVTHRNQPRGDCDGVQINVPITFQVKVTATECIQEQSFVIRALGFTDIVTVQVLPQCEC 425
Query: 153 RIGITGRDCSQCEPRHILTSRGCASCEDGYIGDHCESCDAGYYGNPTELGGSCVPCS-CG 211
R RD S C + L C C+ GYIG +CE G E S
Sbjct: 426 RCRDQSRDRSLCHGKGFLECGIC-RCDTGYIGKNCECQTQGRSSQELEGSCRKDNNSIIC 484
Query: 212 GGPCDASTGECVQCRGNTEGARCERCKPLYYGDPRTGDCKPCECNTSGSLGDECDSISGQ 271
G D G+C+ C + + + C G G+
Sbjct: 485 SGLGDCVCGQCL-CHTSDVPGKLIYGQYCECDTINCERYNGQVCGGPG----RGLCFCGK 539
Query: 272 CQCKENRAGRTCNLALDCPPCDCDPLGTLSVPQPCHPVSGTCYCQPGVTGDRCDQCDTGY 331
C+C G C C S C C C G C +C
Sbjct: 540 CRCHPGFEGSACQCERTTEGCLNPRRVECSGRGRC--RCNVCECHSGYQLPLCQECPG-- 595
Query: 332 WNFTVNGCTSCNCNRDGSLHFSCDVHTGQCSCKPNMTGLACDQCTEGHWGLQELGCASCE 391
C + SC + G C
Sbjct: 596 ------------CPSPCGKYISC---AECLKFEKGPFGKNCSAA------------CPGL 628
Query: 392 CNAVGSVNNSCDQITGQCVCRKGVTGRTCDKCRPDYFGFSVNGCTECAS 440
+ V + C T D D + V+ EC +
Sbjct: 629 QLSNNPVKGRTCKERDSEGCWVAYTLEQQDG--MDRYLIYVDESRECVA 675
Score = 65.9 bits (160), Expect = 2e-11
Identities = 39/303 (12%), Positives = 64/303 (21%), Gaps = 34/303 (11%)
Query: 176 ASCEDGYIGDHCESCDAGYYGNPTELGGSCVPCSCGGGPCDASTGECVQCRGNTEGARCE 235
+ C +G + D + + + +
Sbjct: 362 SFCSNGVTHRNQPRGDCDGVQINVPITFQVKVTATECIQEQSFVIRALGFTDIVTVQVLP 421
Query: 236 RCKPLYYGDPRTGDCK-PCECNTSGSLGDECDSISGQCQCKENRAGRTCNLALDCPPCDC 294
+C +C+ + + G C+C G+ C
Sbjct: 422 QC-----------ECRCRDQSRDRSLCHGKGFLECGICRCDTGYIGKNCECQTQGRSSQE 470
Query: 295 ------DPLGTLSVPQPCHPVSGTCYCQPGVTGDRCDQCDTGYWNFTVNGCTSCNCNRDG 348
++ V G C C D + G + +
Sbjct: 471 LEGSCRKDNNSIICSGLGDCVCGQCLCHT---SDVPGKLIYGQYCECDTINCERYNGQVC 527
Query: 349 SLHFSCDVHTGQCSCKPNMTGLACDQCTEGHWGLQELGCASCECNAVGSVNNSCDQITGQ 408
G+C C P G AC C +
Sbjct: 528 GGPGRGLCFCGKCRCHPGFEGSACQCER---------TTEGCLNPRRVECSGRGRCRCNV 578
Query: 409 CVCRKGVTGRTCDKCRPDYFGFSVNG-CTECASCEQ--SGMVCSEE-SGQCVCPPLTRGD 464
C C G C +C C EC E+ G CS G + +G
Sbjct: 579 CECHSGYQLPLCQECPGCPSPCGKYISCAECLKFEKGPFGKNCSAACPGLQLSNNPVKGR 638
Query: 465 LCI 467
C
Sbjct: 639 TCK 641
Score = 59.3 bits (143), Expect = 2e-09
Identities = 45/266 (16%), Positives = 62/266 (23%), Gaps = 40/266 (15%)
Query: 208 CSCGGGPCDASTGECVQCRGNTEGARCERCKPLYYGDPRTGDCKPCECNTSGSLGDECDS 267
CS G + G+C + N + ++ +
Sbjct: 364 CSNGVTHRNQPRGDCDGVQINVPITFQVKVTATECIQEQSFVIRALGFTDIV-----TVQ 418
Query: 268 ISGQCQCKENRAGRTCNLALDCPPCDCDPLGTLSVPQPCHPVSGTCYCQPGVTGDRCD-Q 326
+ QC+C+ C G L G C C G G C+ Q
Sbjct: 419 VLPQCECRCRDQS--------RDRSLCHGKGFL--------ECGICRCDTGYIGKNCECQ 462
Query: 327 CDTGYWNFTVNGCTSCNCNRDGSLHFSCDVHTGQCSCKPNMTGLAC---DQCTEGHWGLQ 383
C N + S C GQC C + C +
Sbjct: 463 TQGRSSQELEGSCRKDNNSIICSGLGDC--VCGQCLCHTSDVPGKLIYGQYCECDTINCE 520
Query: 384 ELGCASCECNAVGSVNNSCDQITGQCVCRKGVTGRTCDKCRPDYFGFSVNGCTECASCEQ 443
C G+C C G G C C G EC
Sbjct: 521 RYNGQVCGGP------GRGLCFCGKCRCHPGFEGSACQ-CERTTEGCLNPRRVEC----S 569
Query: 444 SGMVCSEESGQCVCPPLTRGDLCIQC 469
C C C + LC +C
Sbjct: 570 GRGRC--RCNVCECHSGYQLPLCQEC 593
Score = 41.2 bits (96), Expect = 8e-04
Identities = 25/184 (13%), Positives = 44/184 (23%), Gaps = 11/184 (5%)
Query: 309 VSGTCYCQPGVTGDRCDQCDTGYWNFTVNGCTSCNCNRDGSLHFSCDVHTGQCSCKPNMT 368
V+ +C GVT + D +N + + + ++
Sbjct: 358 VTYDSFCSNGVTHRNQPRGDCD--GVQINVPITFQVKVTATECIQEQSFVIRALGFTDIV 415
Query: 369 GLACDQCTEGHWGLQELGCASCECNAVGSVNNSCDQITGQCVCRKGVTGRTCDKCRPDYF 428
+ E Q + C + G C C G G+ C+
Sbjct: 416 TVQVLPQCECRCRDQSRDRSLC--------HGKGFLECGICRCDTGYIGKNCECQTQGRS 467
Query: 429 GFSVNG-CTECASCEQSGMVCSEESGQCVCPPLTRGDLCIQCAPNSYGYRPLLGCQPCRC 487
+ G C + + + GQC+C I C
Sbjct: 468 SQELEGSCRKDNNSIICSGLGDCVCGQCLCHTSDVPGKLIYGQYCECDTINCERYNGQVC 527
Query: 488 DLRG 491
G
Sbjct: 528 GGPG 531
>3fcs_B Integrin beta-3; beta propeller, rossmann fold, EGF domain, cell
adhesion, DI mutation, glycoprotein, HOST-virus
interaction, M phosphoprotein; HET: NAG MAN; 2.55A {Homo
sapiens} PDB: 3ije_B* 1jv2_B* 1l5g_B* 1m1x_B* 1u8c_B*
Length = 690
Score = 72.8 bits (178), Expect = 1e-13
Identities = 47/290 (16%), Positives = 77/290 (26%), Gaps = 32/290 (11%)
Query: 176 ASCEDGYIGDHCESCDAGYYGNPTELGGSCVPCSCGGGPCDASTGECVQCRGNTEGARCE 235
A+C + + +SC G+ C + T + V + +
Sbjct: 372 ATCLNNEVIPGLKSCMGLKIGDTVSFSIEAKVRGCPQEKEKSFTIKPVGFKDSLIVQVTF 431
Query: 236 RCKPLYYGDPRTGDCKPCECNTSGSLGDECDSISGQCQCKENRAGRTCNLALDCPPCDCD 295
C + N G C+C G C + +
Sbjct: 432 DCDCACQAQAEPNSHRCNNGN--------GTFECGVCRCGPGWLGSQCECSEEDYRPSQQ 483
Query: 296 PLGTLSVPQPC-----HPVSGTCYCQPGVTGDRCDQ-CDTGYWNFTVNGCTSCNCNRDGS 349
+ QP + G C C G + C+ +F+ C+ G
Sbjct: 484 DECSPREGQPVCSQRGECLCGQCVCHSSDFGKITGKYCECD--DFSCVRYKGEMCSGHG- 540
Query: 350 LHFSCDVHTGQCSCKPNMTGLACDQCTEGHWGLQELGCASCECNAVGSVNNSCDQITGQC 409
C G C C + TG C+ T +C + + G C
Sbjct: 541 ---QCS--CGDCLCDSDWTGYYCNCTT---------RTDTCMSSNGLLCSGRGKCECGSC 586
Query: 410 VCRK-GVTGRTCDKCRPDYFGFSVNGCTECASCEQSGMVCSEESGQCVCP 458
VC + G G TC+KC + G + E + C
Sbjct: 587 VCIQPGSYGDTCEKCPTCPDACTFKKECVECKKFDRGALHDENTCNRYCR 636
Score = 48.9 bits (116), Expect = 4e-06
Identities = 53/318 (16%), Positives = 82/318 (25%), Gaps = 49/318 (15%)
Query: 98 MRVREPGYTGPLCDRCAYGYFGFPSQPNGSCEPCNCSPYGSVSDECHEESGQCNCRIGIT 157
++ G+ L + + + S + + E G C C G
Sbjct: 414 FTIKPVGFKDSLIVQVTF-----DCDCACQAQAEPNSHRCN-NGNGTFECGVCRCGPGWL 467
Query: 158 GRDCSQCEPRHILTSRGCASCEDGYIGDHCESCDAGYYGNPTELGGSCVPCSCGGGPCDA 217
G C E + + + S +G CS G +
Sbjct: 468 GSQCECSEEDYRPSQQDECSPREG-----------------------QPVCSQRG---EC 501
Query: 218 STGECVQCRGNTEGARCERCKPLYYGDPRTGDCKPCECNTSGSLGDECDSISGQCQCKEN 277
G+CV C + G + D C G C C +
Sbjct: 502 LCGQCV-CHSSDFGKITGKYCEC--------DDFSCVRYKGEMCSGHGQCSCGDCLCDSD 552
Query: 278 RAGRTCNLALDCPPCDCDPLGTLSVPQPCHPVSGTCYC-QPGVTGDRCDQCDTGYWNFTV 336
G CN C S G+C C QPG GD C++C T T
Sbjct: 553 WTGYYCNCTTRTDTCMSSNGLLCS--GRGKCECGSCVCIQPGSYGDTCEKCPTCPDACTF 610
Query: 337 NG-CTSCNCNRDGSLHFSCDVHTGQCSCKPNMTGLACDQCTEGHWGLQELGCASCECNAV 395
C C G+L D +T C+ + + G + +C
Sbjct: 611 KKECVECKKFDRGAL---HDENTCNRYCRDEIESVKE-LKDTGKDAVNCTYKNEDDCVVR 666
Query: 396 GSVNNSCDQITGQCVCRK 413
+ V +
Sbjct: 667 FQYYEDSSGKSILYVVEE 684
Score = 46.6 bits (110), Expect = 2e-05
Identities = 41/228 (17%), Positives = 59/228 (25%), Gaps = 25/228 (10%)
Query: 257 TSGSLGDECDSISGQCQCKENRAGRTCNLALDCPPCDCDPLGTLSVPQPCHPVSGTCYCQ 316
+ L +E C + + ++ C + + +
Sbjct: 371 NATCLNNEVIPGLKSCMGLKIGDTVSFSIEAKVRGCPQE--------KEKSFTIKPVGFK 422
Query: 317 PGVTGDRCDQCDTGYWNFTVNGCTSCNCNRDGSLHFSCDVHTGQCSCKPNMTGLACDQCT 376
+ CD CN G C C P G C+
Sbjct: 423 DSLIVQVTFDCDCACQAQAEPNSHRCNNGN-------GTFECGVCRCGPGWLGSQCECSE 475
Query: 377 EGHWGLQELGCASCECNAVGSVNNSCDQITGQCVCRKGVTGRTCDK-CRPDYFGFSVNGC 435
E + Q+ C+ E V S C + GQCVC G+ K C D F
Sbjct: 476 EDYRPSQQDECSPREGQPVCSQRGEC--LCGQCVCHSSDFGKITGKYCECDDFSCVRYKG 533
Query: 436 TECASCEQSGMVCSEESGQCVCPPLTRGDLCIQCAPNSYGYRPLLGCQ 483
C CS G C+C G C C + G
Sbjct: 534 EMC----SGHGQCS--CGDCLCDSDWTGYYC-NCTTRTDTCMSSNGLL 574
Score = 37.8 bits (87), Expect = 0.009
Identities = 29/164 (17%), Positives = 41/164 (25%), Gaps = 20/164 (12%)
Query: 309 VSGTCYCQPGVTGDRCDQCDTGYWNFTVNGCTSCNCNR--DGSLHFSCDVHTGQCSCKPN 366
+S C C TV+ G
Sbjct: 368 LSFNATCLNNEVIPGLKSCMGLKIGDTVSFSIEAKVRGCPQEKEKSFTIKPVGFKDSLIV 427
Query: 367 MTGLACDQCTEGHWGLQELGCASCECNAVGSVNNSCDQITGQCVCRKGVTGRTCDKCRPD 426
CD + E N+ N + G C C G G C+ C +
Sbjct: 428 QVTFDCDCACQAQ----------AEPNSHRCNNGNGTFECGVCRCGPGWLGSQCE-CSEE 476
Query: 427 YFGFSVNGCTECASCEQSGMVCSE----ESGQCVCPPLTRGDLC 466
+ S + S + VCS+ GQCVC G +
Sbjct: 477 DYRPS---QQDECSPREGQPVCSQRGECLCGQCVCHSSDFGKIT 517
>2y38_A Laminin subunit alpha-5; structural protein, cell adhesion,
basement membrane; HET: NAG; 2.90A {Mus musculus}
Length = 403
Score = 69.9 bits (170), Expect = 6e-13
Identities = 30/162 (18%), Positives = 44/162 (27%), Gaps = 11/162 (6%)
Query: 103 PGYTGPLCDRCAYGYFGFPSQPNGSCEPCNCSPYGS---VSDECHEESGQCNCRIGITGR 159
G Y+ C C + D QC C+ G
Sbjct: 240 MGKALRDPTVTRRYYYSIKDI--SIGGRCVCHGHADVCDAKDPLDPFRLQCACQHNTCGG 297
Query: 160 DCSQCEPRHILTSRGCASCEDGYIGDHCESCDAGYYGNPTELGGSCVPCSCGGGPCDAST 219
C +C P A+ + C C Y + S
Sbjct: 298 SCDRCCPGFNQQPWKPATTDSANECQSCN-CHGHAYDCYYDPEVDRREASQNQDNVYQGG 356
Query: 220 GECVQCRGNTEGARCERCKPLYYGDPRTG-----DCKPCECN 256
G C+ C+ +T G CERC P ++ P C+P +
Sbjct: 357 GVCLDCQHHTTGINCERCLPGFFRAPDQPLDSPHVCRPAAAH 398
Score = 64.5 bits (156), Expect = 3e-11
Identities = 26/117 (22%), Positives = 40/117 (34%), Gaps = 8/117 (6%)
Query: 102 EPGYTGPLCDRCAYGYFGFPSQPNGSCEPCNCSPYGSVSDECHEESGQCNCRIGITGRDC 161
+ G CDRC G+ P +P + C CH + C + R+
Sbjct: 291 QHNTCGGSCDRCCPGFNQQPWKPATTDSANECQSC-----NCHGHAYDCYYDPEVDRREA 345
Query: 162 SQCEPRHILTSRGCASCEDGYIGDHCESCDAGYYGNPTELGGS---CVPCSCGGGPC 215
SQ + C C+ G +CE C G++ P + S C P +
Sbjct: 346 SQNQDNVYQGGGVCLDCQHHTTGINCERCLPGFFRAPDQPLDSPHVCRPAAAHHHHH 402
Score = 61.8 bits (149), Expect = 2e-10
Identities = 32/191 (16%), Positives = 50/191 (26%), Gaps = 33/191 (17%)
Query: 168 HILTSRGCASCEDGYIGDHCESCDAGYYGNPTELGGSCVPCSCGG-------GPCDASTG 220
L + G YY C C G
Sbjct: 228 RFLRTNTLLGHLMGKALRDPTVTRRYYYSIKD--ISIGGRCVCHGHADVCDAKDPLDPFR 285
Query: 221 ECVQCRGNTEGARCERCKPLYYGDPRTGDCKPCECNTSGSLGDECDSISGQCQCKENRAG 280
C+ NT G C+RC P + P KP +++ EC C C +
Sbjct: 286 LQCACQHNTCGGSCDRCCPGFNQQP----WKPATTDSAN----ECQ----SCNCHGHAYD 333
Query: 281 RTCNLALDCPPCDCDPLGTLSVPQPCHPVSGTCYCQPGVTGDRCDQCDTGYWNF------ 334
+ +D + C CQ TG C++C G++
Sbjct: 334 CYYDPEVDRREASQNQDNVYQGGGVC------LDCQHHTTGINCERCLPGFFRAPDQPLD 387
Query: 335 TVNGCTSCNCN 345
+ + C +
Sbjct: 388 SPHVCRPAAAH 398
Score = 57.6 bits (138), Expect = 4e-09
Identities = 30/156 (19%), Positives = 44/156 (28%), Gaps = 27/156 (17%)
Query: 289 CPPCDCDPLGTLSVPQ-PCHPVSGTCYCQPGVTGDRCDQCDTGYWNFTVNGCTSCNCNRD 347
C C + + P P C CQ G CD+C G+ T+ + N
Sbjct: 263 GGRCVCHGHADVCDAKDPLDPFRLQCACQHNTCGGSCDRCCPGFNQQPWKPATTDSAN-- 320
Query: 348 GSLHFSCDVHTGQCSCKPNMTGLACDQCTEGHWGLQELGCASCECNAVGSVNNSCDQITG 407
+C H C P + Q + Q G
Sbjct: 321 ECQSCNCHGHAYDCYYDPEVDRREASQNQDN-----------------------VYQGGG 357
Query: 408 QCV-CRKGVTGRTCDKCRPDYFGFSVNGCTECASCE 442
C+ C+ TG C++C P +F C
Sbjct: 358 VCLDCQHHTTGINCERCLPGFFRAPDQPLDSPHVCR 393
Score = 46.0 bits (108), Expect = 2e-05
Identities = 24/167 (14%), Positives = 43/167 (25%), Gaps = 35/167 (20%)
Query: 357 HTGQCSCKPNMTGLACDQCTEGHWGLQELG-CASCECN---AVGSVNNSCDQITGQCVCR 412
++ ++++ C C+ V + D QC C+
Sbjct: 232 TNTLLGHLMGKALRDPTVTRRYYYSIKDISIGGRCVCHGHADVCDAKDPLDPFRLQCACQ 291
Query: 413 KGVTGRTCDKCRPDYFGFSVNGCT-------------------------ECASCEQSGMV 447
G +CD+C P + T + Q+
Sbjct: 292 HNTCGGSCDRCCPGFNQQPWKPATTDSANECQSCNCHGHAYDCYYDPEVDRREASQNQDN 351
Query: 448 CSEESGQCV-CPPLTRGDLCIQCAPNSYG-----YRPLLGCQPCRCD 488
+ G C+ C T G C +C P + C+P
Sbjct: 352 VYQGGGVCLDCQHHTTGINCERCLPGFFRAPDQPLDSPHVCRPAAAH 398
Score = 39.5 bits (91), Expect = 0.002
Identities = 27/124 (21%), Positives = 36/124 (29%), Gaps = 18/124 (14%)
Query: 15 SSNVEGRQCDQCRPGSFSLSADNLAGCTPCFCFNRSTHCTEAGQYTGNRIGSYSLNLEFS 74
N G CD+C PG + C + + H Y
Sbjct: 291 QHNTCGGSCDRCCPGFNQQPWKPATTDSANECQSCNCHGHAYDCY--------------- 335
Query: 75 VSWIVMRGDTSGIPTQVPDIILIMRVREPGYTGPLCDRCAYGYFGFPSQPNGS---CEPC 131
V R + S V + + TG C+RC G+F P QP S C P
Sbjct: 336 YDPEVDRREASQNQDNVYQGGGVCLDCQHHTTGINCERCLPGFFRAPDQPLDSPHVCRPA 395
Query: 132 NCSP 135
Sbjct: 396 AAHH 399
Score = 30.2 bits (67), Expect = 1.6
Identities = 10/39 (25%), Positives = 15/39 (38%), Gaps = 3/39 (7%)
Query: 17 NVEGRQCDQCRPGSF---SLSADNLAGCTPCFCFNRSTH 52
+ G C++C PG F D+ C P + H
Sbjct: 365 HTTGINCERCLPGFFRAPDQPLDSPHVCRPAAAHHHHHH 403
>1skz_A Antistasin; factor XA inhibitor, serine protease inhibitor,
thrombosis; 1.90A {Haementeria officinalis} SCOP:
g.3.15.1 g.3.15.1
Length = 119
Score = 62.0 bits (150), Expect = 5e-12
Identities = 21/120 (17%), Positives = 32/120 (26%), Gaps = 16/120 (13%)
Query: 288 DCPPCDCDPLGTLSVPQPCHPVSGTCYCQPGVTGDRCDQCDTGYWNFTVN--------GC 339
D C+ G C+ ++ C C C G+
Sbjct: 2 DPFGPGCEEAGCPE-GSACNIITDRCTCSGV---RCRVHCPHGFQRSRYGCEFCKCRLEP 57
Query: 340 TSCNCNRDGSLH-FSCDVHTGQCSCKPNMTGLACDQCTEGHWGLQELGCASCECNAVGSV 398
C+ C T +C CK + C + +LGC CEC +
Sbjct: 58 MKATCDISECPEGMMCSRLTNKCDCKI---DINCRKTCPNGLKRDKLGCEYCECRPKRKL 114
Score = 58.5 bits (141), Expect = 9e-11
Identities = 21/111 (18%), Positives = 33/111 (29%), Gaps = 16/111 (14%)
Query: 338 GCTSCNCNRDGSLHFS-CDVHTGQCSCKPNMTGLACDQCTEGHWGLQ--------ELGCA 388
C G S C++ T +C+C C G + L
Sbjct: 2 DPFGPGCEEAGCPEGSACNIITDRCTCSGVRC---RVHCPHGFQRSRYGCEFCKCRLEPM 58
Query: 389 SCECNAVGSVNNS-CDQITGQCVCRKGVTGRTCDKCRPDYFGFSVNGCTEC 438
C+ C ++T +C C+ + C K P+ GC C
Sbjct: 59 KATCDISECPEGMMCSRLTNKCDCKIDIN---CRKTCPNGLKRDKLGCEYC 106
Score = 57.0 bits (137), Expect = 3e-10
Identities = 22/117 (18%), Positives = 32/117 (27%), Gaps = 19/117 (16%)
Query: 249 DCKPCECNTSGSL-GDECDSISGQCQCKENR--------------AGRTCNLALDCPPCD 293
D C +G G C+ I+ +C C R C L+
Sbjct: 2 DPFGPGCEEAGCPEGSACNIITDRCTCSGVRCRVHCPHGFQRSRYGCEFCKCRLEPMKAT 61
Query: 294 CDPLGTLSVPQPCHPVSGTCYCQPGVTGDRCDQCDTGYWNFTVNGCTSCNCNRDGSL 350
CD C ++ C C+ + C + GC C C L
Sbjct: 62 CDISECPE-GMMCSRLTNKCDCKIDIN---CRKTCPNGLKRDKLGCEYCECRPKRKL 114
Score = 47.7 bits (113), Expect = 5e-07
Identities = 25/120 (20%), Positives = 36/120 (30%), Gaps = 19/120 (15%)
Query: 386 GCASCECNAVGSVNNS-CDQITGQCVCRKGVTGRTCDKCRPDYFGFSVN--------GCT 436
C G S C+ IT +C C R C +
Sbjct: 2 DPFGPGCEEAGCPEGSACNIITDRCTCSGV---RCRVHCPHGFQRSRYGCEFCKCRLEPM 58
Query: 437 ECA---SCEQSGMVCSEESGQCVCPPLTRGDLCIQCAPNSYGYRPLLGCQPCRCDLRGSM 493
+ S GM+CS + +C C C + PN LGC+ C C + +
Sbjct: 59 KATCDISECPEGMMCSRLTNKCDCKI---DINCRKTCPNGLKR-DKLGCEYCECRPKRKL 114
Score = 36.2 bits (83), Expect = 0.006
Identities = 14/77 (18%), Positives = 22/77 (28%), Gaps = 10/77 (12%)
Query: 110 CDRCAYGYFGFPSQPNGS-----CEPCNCSPYGSVSD-ECHEESGQCNCRIGITGRDCSQ 163
C +G+ C C + +C+C+I I C +
Sbjct: 34 RVHCPHGFQRSRYGCEFCKCRLEPMKATCDISECPEGMMCSRLTNKCDCKIDIN---CRK 90
Query: 164 CEPRHI-LTSRGCASCE 179
P + GC CE
Sbjct: 91 TCPNGLKRDKLGCEYCE 107
Score = 35.4 bits (81), Expect = 0.009
Identities = 21/147 (14%), Positives = 34/147 (23%), Gaps = 46/147 (31%)
Query: 128 CEPCNCSPYGSVSD-ECHEESGQCNCRIGITGRDCSQCEPRHILTSRGCASCEDGYIGDH 186
C G C+ + +C C
Sbjct: 3 PFGPGCEEAGCPEGSACNIITDRCTCSGV-----------------------------RC 33
Query: 187 CESCDAGYYGNPT-----ELGGSCVPCSC------GGGPCDASTGECVQCRGNTEGARCE 235
C G+ + + + +C G C T +C C+ C
Sbjct: 34 RVHCPHGFQRSRYGCEFCKCRLEPMKATCDISECPEGMMCSRLTNKC-DCK---IDINCR 89
Query: 236 RCKPLYYGDPRTGDCKPCECNTSGSLG 262
+ P + G C+ CEC L
Sbjct: 90 KTCPNGLKRDKLG-CEYCECRPKRKLI 115
>3zyj_B Netrin-G1; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo
sapiens}
Length = 426
Score = 62.6 bits (151), Expect = 1e-10
Identities = 26/159 (16%), Positives = 38/159 (23%), Gaps = 34/159 (21%)
Query: 188 ESCDAGYYGNPTELGGSCVPCSCGGGPCDASTGE-CVQCRGNTEGARCERCKPLYYGDP- 245
+Y C+ C + +C NT G C +CK Y G P
Sbjct: 279 LHLARYFYAISDIKVRGRCKCNLHATVCVYDNSKLTCECEHNTTGPDCGKCKKNYQGRPW 338
Query: 246 -----------RTGDCKPCECNTSGSLGDECDSI---------SGQCQCKENRAGRTCNL 285
C P + ++ D + +C C G C
Sbjct: 339 SPGSYLPIPKGAANACIPSISSIGTNVCDNELLHCQNGGTCHNNVRCLCPAAYTGILCE- 397
Query: 286 ALDCPPCDCDPLGTLSVPQPCHPVSGTCYCQPGVTGDRC 324
C+ G+ C SG G
Sbjct: 398 -----KLRCEEAGS------CGSDSGQGAPPHGTHHHHH 425
Score = 62.2 bits (150), Expect = 1e-10
Identities = 33/189 (17%), Positives = 52/189 (27%), Gaps = 28/189 (14%)
Query: 98 MRVREPGYTGPLCDRCAYGYFGFPSQPNGSCEPCNCSPYGSVSDECHEESGQCNCRIGIT 157
+R+ P D + + C C+ + +V + + C C T
Sbjct: 264 IRLLRPAVGEIFVDELHLARYFYAISDIKVRGRCKCNLHATVCVYDNSK-LTCECEHNTT 322
Query: 158 GRDCSQCEPRHILTSRGCASCEDGYIGDHCESCDAGYYGNPTELGGSCVPCSCGGGPCDA 217
G DC +C+ + S G C+P G +
Sbjct: 323 GPDCGKCKKNYQGRPWSPGSYLPIPKGAANA----------------CIPSISSIG-TNV 365
Query: 218 STGECVQCR--GNTEGARCERCKPLYYGDPRTGDCKPCECNTSGSLGDECDSISGQCQCK 275
E + C+ G C Y G C+ C +GS C S SGQ
Sbjct: 366 CDNELLHCQNGGTCHNNVRCLCPAAYTGI----LCEKLRCEEAGS----CGSDSGQGAPP 417
Query: 276 ENRAGRTCN 284
+
Sbjct: 418 HGTHHHHHH 426
Score = 57.2 bits (137), Expect = 6e-09
Identities = 27/145 (18%), Positives = 36/145 (24%), Gaps = 26/145 (17%)
Query: 289 CPPCDCDPLGTLSVPQPCHPVSGTCYCQPGVTGDRCDQCDTGYW-------------NFT 335
C C+ T+ V TC C+ TG C +C Y
Sbjct: 294 RGRCKCNLHATVCVYDNSK---LTCECEHNTTGPDCGKCKKNYQGRPWSPGSYLPIPKGA 350
Query: 336 VNGCTSCNCNRDGSLHFSCDVHTGQCSCKPNMTGLACDQCTEGHWGLQELGCASCECNAV 395
N C + + CD C C + G+ C C
Sbjct: 351 ANACIPSISSIGTN---VCDNELLHCQNGGTCHNNVRCLCPAAYTGIL---CEKLRCEEA 404
Query: 396 GSVNNSCDQITGQCVCRKGVTGRTC 420
GS C +GQ G
Sbjct: 405 GS----CGSDSGQGAPPHGTHHHHH 425
Score = 51.0 bits (121), Expect = 5e-07
Identities = 25/118 (21%), Positives = 35/118 (29%), Gaps = 17/118 (14%)
Query: 387 CASCECNAVGSVNNSCDQITGQCVCRKGVTGRTCDKCRPDYFGFSVNGCTECAS------ 440
C+CN +V D C C TG C KC+ +Y G + +
Sbjct: 294 RGRCKCNLHATVCV-YDNSKLTCECEHNTTGPDCGKCKKNYQGRPWSPGSYLPIPKGAAN 352
Query: 441 ------CEQSGMVCSEESGQCVCPPLTRGDLCIQCAPNSYGYRPLLGCQPCRCDLRGS 492
VC E C ++ C G C+ RC+ GS
Sbjct: 353 ACIPSISSIGTNVCDNELLHCQNGGTCHNNVRCLCPAAYTGIL----CEKLRCEEAGS 406
Score = 28.3 bits (62), Expect = 7.7
Identities = 21/160 (13%), Positives = 27/160 (16%), Gaps = 61/160 (38%)
Query: 13 VHSSNVEGRQCDQCRPGSFS----------LSADNLAGCTPCFCFNRSTHCT-EAGQYTG 61
N G C +C+ + C P + C E
Sbjct: 316 ECEHNTTGPDCGKCKKNYQGRPWSPGSYLPIPKGAANACIPSISSIGTNVCDNELLHCQN 375
Query: 62 NRIGSYSLNLEFSVSWIVMRGDTSGIPTQVPDIILIMRVREPGYTGPLCDRCAYGYFGFP 121
+ C Y G
Sbjct: 376 GGTCH----------------------------------------NNVRCLCPAAYTGIL 395
Query: 122 SQPNGSCEPCNCSPYGSVSDECHEESGQCNCRIGITGRDC 161
CE C GS C +SGQ G
Sbjct: 396 ------CEKLRCEEAGS----CGSDSGQGAPPHGTHHHHH 425
>2dtg_E Insulin receptor; IR ectodomain, X-RAY crystallography, hormone
receptor/immune system complex; 3.80A {Homo sapiens}
SCOP: b.1.2.1 b.1.2.1 b.1.2.1 c.10.2.5 c.10.2.5 g.3.9.1
PDB: 3loh_E
Length = 897
Score = 48.0 bits (113), Expect = 7e-06
Identities = 27/166 (16%), Positives = 39/166 (23%), Gaps = 16/166 (9%)
Query: 121 PSQPNGSCEPCNCSPYGSVSDEC-HEESGQCNCRIGITGRDC-SQCEPRH---------I 169
P G G + C Q C C ++ H
Sbjct: 160 PGTAKGKTNCPATVINGQFVERCWTHSHCQKVCPTICKSHGCTAEGLCCHSECLGNCSQP 219
Query: 170 LTSRGCASCEDGYIGDHC-ESCDAGYYGNPTELGGSCVPCSCGGGPCDASTGECVQCRGN 228
C +C + Y+ C E+C YY + C C S +
Sbjct: 220 DDPTKCVACRNFYLDGRCVETCPPPYYHFQDWRCVNFSFCQDLHHKCKNSRRQGCHQYVI 279
Query: 229 TEGARCERCKPLYYGDPRTGDCKPCECNTSGSLGDECDSISGQCQC 274
C Y + C PC G C + G+
Sbjct: 280 HNNKCIPECPSGYTMNSSNLLCTPCL----GPCPKVCHLLEGEKTI 321
Score = 46.1 bits (108), Expect = 2e-05
Identities = 38/190 (20%), Positives = 50/190 (26%), Gaps = 24/190 (12%)
Query: 300 LSVPQPCHPVSGTCYCQPGVTGDRCDQCDTGYWNFTVNGCTSCNCNRDGSLHFSCDVHTG 359
L + H V + GD C G N C + N H
Sbjct: 137 LDSVEDNHIVLNKDDNEE--CGDICPGTAKGKTN-----CPATVINGQFVERCWTHSHC- 188
Query: 360 QCSCKPNMTGLACDQCTEGHWGLQELGCASCECNAVGSVNNSCDQITGQCV-CRKGVTGR 418
Q C C C EC S + + CV CR
Sbjct: 189 QKVCPTICKSHGCTAEGL---------CCHSECLGNCSQPDDPTK----CVACRNFYLDG 235
Query: 419 TC-DKCRPDYFGFSVNGCTECASCEQSGMVCSEESGQCVCPPLTRGDLCI-QCAPNSYGY 476
C + C P Y+ F C + C+ C Q + + CI +C
Sbjct: 236 RCVETCPPPYYHFQDWRCVNFSFCQDLHHKCKNSRRQGCHQYVIHNNKCIPECPSGYTMN 295
Query: 477 RPLLGCQPCR 486
L C PC
Sbjct: 296 SSNLLCTPCL 305
Score = 37.2 bits (85), Expect = 0.017
Identities = 32/203 (15%), Positives = 56/203 (27%), Gaps = 20/203 (9%)
Query: 236 RCKPLYYGDPRTGDCKPCECNTSGSLGDECDSISGQCQCKENRAGRTCNLALDCPPCDCD 295
+ D + C G+ + + + + T + P C
Sbjct: 138 DSVEDNHIVLNKDDNEECGDICPGTAKGKTNCPATVINGQFVERCWTHSHCQKVCPTICK 197
Query: 296 PLGTLSVPQPCHPV-SGTCY----------CQPGVTGDRC-DQCDTGYWNFTVNGCTSCN 343
G + CH G C C+ RC + C Y++F C + +
Sbjct: 198 SHGCTAEGLCCHSECLGNCSQPDDPTKCVACRNFYLDGRCVETCPPPYYHFQDWRCVNFS 257
Query: 344 CNRDGSLHFSCDVHTGQCSCKPNMTGLAC-DQCTEGH-WGLQELGCASCECNAVGSVNNS 401
+ LH C Q + + C +C G+ L C C G
Sbjct: 258 FCQ--DLHHKCKNSRRQGCHQYVIHNNKCIPECPSGYTMNSSNLLCTPCL----GPCPKV 311
Query: 402 CDQITGQCVCRKGVTGRTCDKCR 424
C + G+ + + C
Sbjct: 312 CHLLEGEKTIDSVTSAQELRGCT 334
>3tbd_A Netrin-G2, laminet-2; laminin N-terminal domain, domain VI,
LE-domain, N neuronal cell adhesion molecule, netrin G
ligand 2, nervous system; HET: NAG; 1.80A {Homo sapiens}
PDB: 3zyg_A* 3zyi_B*
Length = 338
Score = 46.5 bits (109), Expect = 1e-05
Identities = 13/97 (13%), Positives = 18/97 (18%), Gaps = 20/97 (20%)
Query: 175 CASCEDGYIGDHCESCDAGYYGNPTELGGSCVPCSCGG--GPCDASTGECVQ-CRGNTEG 231
A ++ C C C G C NT G
Sbjct: 242 PALGGTYVQRENLYKYFYAISNIEV-----IGRCKCNLHANLCSMREGSLQCECEHNTTG 296
Query: 232 ARCERCKPLYYGDP------------RTGDCKPCECN 256
C +CK + C +
Sbjct: 297 PDCGKCKKNFRTRSWRAGSYLPLPHGSPNACAAAGSH 333
Score = 38.0 bits (87), Expect = 0.007
Identities = 19/133 (14%), Positives = 33/133 (24%), Gaps = 6/133 (4%)
Query: 319 VTGDRCDQCDTGYWNFTVNGCTSCNCNRDGSLHFSCDVHTGQCSCKPNMTGLACDQCTEG 378
V N + D+ T + + +
Sbjct: 198 VRDRFAIFAGPDLRNMDNLYTRLESAKGLKEFFTLTDLRMRLLRPALGGTYVQRENLYKY 257
Query: 379 HWGLQEL-GCASCECNAVGSVNNSCDQITGQ--CVCRKGVTGRTCDKCRPDYFGFSVNGC 435
+ + + C+CN + C G C C TG C KC+ ++ S
Sbjct: 258 FYAISNIEVIGRCKCNLHAN---LCSMREGSLQCECEHNTTGPDCGKCKKNFRTRSWRAG 314
Query: 436 TECASCEQSGMVC 448
+ S C
Sbjct: 315 SYLPLPHGSPNAC 327
Score = 37.6 bits (86), Expect = 0.008
Identities = 16/96 (16%), Positives = 25/96 (26%), Gaps = 20/96 (20%)
Query: 313 CYCQPGVTGDRCDQCDTGYWNFTVNGCTSCNCNRDGSLHFSCDVHTGQ--CSCKPNMTGL 370
V + + N C CN + C + G C C+ N TG
Sbjct: 243 ALGGTYVQRENLYKYFYAISNI--EVIGRCKCNLHAN---LCSMREGSLQCECEHNTTGP 297
Query: 371 ACDQCTEGHWGL-------------QELGCASCECN 393
C +C + CA+ +
Sbjct: 298 DCGKCKKNFRTRSWRAGSYLPLPHGSPNACAAAGSH 333
Score = 34.9 bits (79), Expect = 0.065
Identities = 12/72 (16%), Positives = 20/72 (27%), Gaps = 20/72 (27%)
Query: 289 CPPCDCDPLGTLSVPQPCHPVSGT--CYCQPGVTGDRCDQCDTGYWNF------------ 334
C C+ C G+ C C+ TG C +C +
Sbjct: 267 IGRCKCNLHA-----NLCSMREGSLQCECEHNTTGPDCGKCKKNFRTRSWRAGSYLPLPH 321
Query: 335 -TVNGCTSCNCN 345
+ N C + +
Sbjct: 322 GSPNACAAAGSH 333
Score = 32.6 bits (73), Expect = 0.31
Identities = 13/117 (11%), Positives = 20/117 (17%), Gaps = 42/117 (35%)
Query: 106 TGPLCDRCAYGYFGFPSQPNGSCEPCNCSPYGSVSDECHEESGQCNCRIGITGRDCSQCE 165
+ Y C C+ + ++ C G C
Sbjct: 250 QRENLYKYFYAISNIEV-----IGRCKCNLH---ANLCSMREGSLQC------------- 288
Query: 166 PRHILTSRGCASCEDGYIGDHCESCDAGYYGNPTELGG----------SCVPCSCGG 212
CE G C C + G +C
Sbjct: 289 -----------ECEHNTTGPDCGKCKKNFRTRSWRAGSYLPLPHGSPNACAAAGSHH 334
Score = 29.5 bits (65), Expect = 2.7
Identities = 7/43 (16%), Positives = 11/43 (25%), Gaps = 10/43 (23%)
Query: 102 EPGYTGPLCDRCAYGYFGFPSQPNG----------SCEPCNCS 134
E TGP C +C + + +C
Sbjct: 291 EHNTTGPDCGKCKKNFRTRSWRAGSYLPLPHGSPNACAAAGSH 333
>2ygq_A WIF-1, WNT inhibitory factor 1; signaling protein, WNT signaling
pathway, WNT antagonist, MO cancer, glycosaminoglycan;
HET: PCF NAG FUC SCR; 3.95A {Homo sapiens}
Length = 324
Score = 46.0 bits (109), Expect = 2e-05
Identities = 53/283 (18%), Positives = 70/283 (24%), Gaps = 70/283 (24%)
Query: 184 GDHCESCDAGYYGNPTELGGSCVPCSCGGGPCDASTGECVQCRGNTEGARCERCKPLYYG 243
G G P V S G + + +
Sbjct: 94 GTVPHKASVVQVGFPCLGKQDGVAAFEVDVIVMNSEGNTILKT----------PQNAIFF 143
Query: 244 DPRTGDCKPCECNTSGSLGDECDSISGQCQCKENRAGRTCNLALDCPPCDCDPLGTLSVP 303
C+ EC G C+ C+C + G C C G P
Sbjct: 144 K----TCQQAECPGGCRNGGFCNE-RRICECPDGFHGPHCEK--ALCTPRCMNGGLCVTP 196
Query: 304 QPCHPVSGTCYCQPGVTGDRCDQCDTGYWNFTVNGCTSCNCNRDGSLHFSCDVHTGQCSC 363
G C C PG G CD+ S C G+ C + G+C C
Sbjct: 197 -------GFCICPPGFYGVNCDKA-----------NCSTTCFNGGT----C-FYPGKCIC 233
Query: 364 KPNMTGLACDQCTEGHWGLQELGCASCECNAVGSVNNSCDQITGQCVCRKGVTGRTCDKC 423
P + G C+ C G +C C KG G C K
Sbjct: 234 PPGLEGEQCEIS-----------KCPQPCRNGGKCIGK-----SKCKCSKGYQGDLCSKP 277
Query: 424 RPDYFGFSVNGCTECASCEQSGMVCSEESGQCVCPPLTRGDLC 466
+ GC +C E +C C G C
Sbjct: 278 VCE------PGCGAHGTCH--------EPNKCQCQEGWHGRHC 306
Score = 42.1 bits (99), Expect = 3e-04
Identities = 50/274 (18%), Positives = 72/274 (26%), Gaps = 65/274 (23%)
Query: 107 GPLCDRCAYGYFGFPSQPNGSCEPCNCSPYGSVSDECHEESGQCNCRIGITGRDCSQ--- 163
G + + + GFP + + + I + C Q
Sbjct: 94 GTVPHKASVVQVGFPCLGKQDGVAAFEV--DVIVMNSEGNTILKTPQNAIFFKTCQQAEC 151
Query: 164 ---CEPRHILTSRGCASCEDGYIGDHCESCDAGYYGNPTELGGSCVPCSCGGGPCDASTG 220
C R C DG+ G HCE C G + G
Sbjct: 152 PGGCRNGGFCNERRICECPDGFHGPHCEKA--------------LCTPRCMNGGLCVTPG 197
Query: 221 ECVQCRGNTEGARCERCKPLYYGDPRTGDCKPCECNTSGSLGDECDSISGQCQCKENRAG 280
C+ C P +YG +C C+T+ G C G+C C G
Sbjct: 198 FCI-------------CPPGFYGV----NCDKANCSTTCFNGGTCFY-PGKCICPPGLEG 239
Query: 281 RTCNLALDCPPCDCDPLGTLSVPQPCHPVSGTCYCQPGVTGDRCDQCDTGYWNFTVNGCT 340
C + P C G C C C G GD C +
Sbjct: 240 EQCE--ISKCPQPCRNGGK------CIG-KSKCKCSKGYQGDLCSK-----------PVC 279
Query: 341 SCNCNRDGSLHFSCDVHTGQCSCKPNMTGLACDQ 374
C G+ +C C+ G C++
Sbjct: 280 EPGCGAHGTC-----HEPNKCQCQEGWHGRHCNK 308
Score = 41.8 bits (98), Expect = 4e-04
Identities = 43/239 (17%), Positives = 66/239 (27%), Gaps = 55/239 (23%)
Query: 228 NTEGARCERCKPLYYGDPRTGDCKPCECNTSGSLGDECDSISGQCQCKENRAGRTCNLAL 287
G + + G P G + + + + +TC A
Sbjct: 91 PLLGTVPHKASVVQVGFPCLGKQDGVAAFEVDVIVMNSEGNTILKTPQNAIFFKTCQQA- 149
Query: 288 DCPPCDCDPLGTLSVPQPCHPVSGTCYCQPGVTGDRCDQCDTGYWNFTVNGCTSCNCNRD 347
P C G + C C G G C++ + C
Sbjct: 150 -ECPGGCRNGGFCNER-------RICECPDGFHGPHCEKA-----------LCTPRCMNG 190
Query: 348 GSLHFSCDVHTGQCSCKPNMTGLACDQCTEGHWGLQELGCASCECNAVGSVNNSCDQITG 407
G V G C C P G+ CD+ S C G+ G
Sbjct: 191 GL-----CVTPGFCICPPGFYGVNCDKA-----------NCSTTCFNGGTCFY-----PG 229
Query: 408 QCVCRKGVTGRTCDKCRPDYFGFSVNGCTECASCEQSGMVCSEESGQCVCPPLTRGDLC 466
+C+C G+ G C+ +C ++G C +C C +GDLC
Sbjct: 230 KCICPPGLEGEQCEIS-------------KCPQPCRNGGKCI-GKSKCKCSKGYQGDLC 274
Score = 31.7 bits (72), Expect = 0.58
Identities = 42/252 (16%), Positives = 67/252 (26%), Gaps = 74/252 (29%)
Query: 103 PGYTGPLCDRCAYGYFGFPSQPNGSCEPCNCSPYGSVSDECHEESGQCNCRIGITGRDCS 162
C + P C G ++ C C G G C
Sbjct: 139 NAIFFKTCQQA--------------ECPGGCRNGGFCNE-----RRICECPDGFHGPHCE 179
Query: 163 Q------CEPRHILTSRGCASCEDGYIGDHCESCDAGYYGNPTELGGSCVPCSCGGGPCD 216
+ C + + G C G+ G +C+ + GG+C
Sbjct: 180 KALCTPRCMNGGLCVTPGFCICPPGFYGVNCDKANC---STTCFNGGTCF---------- 226
Query: 217 ASTGECVQCRGNTEGARCERCKPLYYGDPRTGDCKPCECNTSGSLGDECDSISGQCQCKE 276
G+C+ C P G+ C+ +C G +C +C+C +
Sbjct: 227 -YPGKCI-------------CPPGLEGE----QCEISKCPQPCRNGGKCIG-KSKCKCSK 267
Query: 277 NRAGRTCNLALDCPPCDCDPLGTLSVPQPCHPVSGTCYCQPGVTGDRCDQCDTGYWNFTV 336
G C+ + C GT CH C CQ G G C++
Sbjct: 268 GYQGDLCSKPVC--EPGCGAHGT------CHE-PNKCQCQEGWHGRHCNK--------RY 310
Query: 337 NGCTSCNCNRDG 348
+
Sbjct: 311 EASLIGTKHHHH 322
Score = 30.2 bits (68), Expect = 1.8
Identities = 30/172 (17%), Positives = 44/172 (25%), Gaps = 39/172 (22%)
Query: 298 GTLSVPQPCHPVSGTCYCQPGVTGDRCDQCDTGYWNFTVNGCTSCNCNRDGSLHFSCDVH 357
G ++ P P+ GT + V C N +G +
Sbjct: 81 GIMADPTVNVPLLGTVPHKASVVQVGF-PCLGKQDGVAAFEVDVIVMNSEG--------N 131
Query: 358 TGQCSCKPNMTGLACDQCTEGHWGLQELGCASCECNAVGSVNNSCDQITGQCVCRKGVTG 417
T + + + C Q EC C++ C C G G
Sbjct: 132 TILKTPQNAIFFKTCQQA---------------ECPGGCRNGGFCNE-RRICECPDGFHG 175
Query: 418 RTCDKCRPDYFGFSVNGCTECASCEQSGMVCSEESGQCVCPPLTRGDLCIQC 469
C+K C C G C+CPP G C +
Sbjct: 176 PHCEKALCT------PRCMNGGLCV--------TPGFCICPPGFYGVNCDKA 213
>2hr7_A Insulin receptor; hormone receptor, leucine rich repeat,
transferase; HET: NAG BMA MAN FUC P33; 2.32A {Homo
sapiens}
Length = 486
Score = 43.3 bits (101), Expect = 2e-04
Identities = 23/162 (14%), Positives = 37/162 (22%), Gaps = 16/162 (9%)
Query: 106 TGPLCDRCAYGYFGFPSQPNGSCEPCNCSPYGSVSDECHEE----------SGQCNCRIG 155
C G + + C + + + C
Sbjct: 151 DNEECGDICPGTAKGKTNCPATVINGQFVERCWTHSHCQKVCPTICKSHGCTAEGLCCHS 210
Query: 156 ITGRDCSQCEPRHILTSRGCASCEDGYIGDHC-ESCDAGYYGNPTELGGSCVPCSCGGGP 214
+CSQ + C +C + Y+ C E+C YY + C
Sbjct: 211 ECLGNCSQPD-----DPTKCVACRNFYLDGRCVETCPPPYYHFQDWRCVNFSFCQDLHHK 265
Query: 215 CDASTGECVQCRGNTEGARCERCKPLYYGDPRTGDCKPCECN 256
C S + C Y + C PC
Sbjct: 266 CKNSRRQGCHQYVIHNNKCIPECPSGYTMNSSNLLCTPCLGP 307
Score = 40.2 bits (93), Expect = 0.002
Identities = 28/152 (18%), Positives = 40/152 (26%), Gaps = 5/152 (3%)
Query: 339 CTSCNCNRDGSLHFSCDVHTGQCSCKPNMTGLACDQCTEGHWGLQELGCASCECNAVGSV 398
C + + + + C + H E C EC S
Sbjct: 159 CPGTAKGKTNCPATVINGQFVERCWTHSHCQKVCPTICKSHGCTAEGLCCHSECLGNCS- 217
Query: 399 NNSCDQITGQCVCRKGVTGRTC-DKCRPDYFGFSVNGCTECASCEQSGMVCSEESGQCVC 457
D T CR C + C P Y+ F C + C+ C Q
Sbjct: 218 --QPDDPTKCVACRNFYLDGRCVETCPPPYYHFQDWRCVNFSFCQDLHHKCKNSRRQGCH 275
Query: 458 PPLTRGDLCI-QCAPNSYGYRPLLGCQPCRCD 488
+ + CI +C L C PC
Sbjct: 276 QYVIHNNKCIPECPSGYTMNSSNLLCTPCLGP 307
>3t5o_A Complement component C6; macpf, MAC, membrane attack complex,
innate IMMU system, blood, membrane, cytolysin, immune
SYST; HET: NAG FUL FUC BGC MAN; 2.87A {Homo sapiens}
PDB: 4a5w_B* 4e0s_B*
Length = 913
Score = 43.3 bits (101), Expect = 2e-04
Identities = 53/398 (13%), Positives = 96/398 (24%), Gaps = 54/398 (13%)
Query: 112 RCAYGYFGFPSQPNGSCEPCN----CSPYGSVSDECHEESGQCNCRIGITGRDCSQCEPR 167
A + P + N Y + D C N R ++G +C
Sbjct: 465 ELAPIVDLVRNIPCAVTKRNNLRKALQEYAAKFDPCQCAPCPNNGRPTLSGTECLC---- 520
Query: 168 HILTSRGCASCEDGYIGDHCESCDAGYYGNPTELGGSCVPCSCGGGPCDASTGECVQCRG 227
C+ G G++CE Y N G C +S C
Sbjct: 521 ---------VCQSGTYGENCEKQSPDYKSNAV----------DGQWGCWSSWSTCDATYK 561
Query: 228 NTEGARCERCKPLYYGDPRTGDCKPCECNTSGSLGDECDSISGQCQCKENRAGRTCNLAL 287
+ C P G G+ + E T + + + +
Sbjct: 562 RSRTRECNNPAPQRGGKRCEGEKRQEEDCTFSIMENNGQPCINDDEEMKEVDLPEIEADS 621
Query: 288 DCPPCDCDPLGTLSVPQPCHPVSGTC--YCQPGVT--GDRCDQC-DTGYWNFTVNGCTSC 342
CP G + + + V C G G + +C G W C
Sbjct: 622 GCPQPVPPENGFIRNEKQLYLVGEDVEISCLTGFETVGYQYFRCLPDGTWRQGDVECQRT 681
Query: 343 NCNRDGSLHFSCDVHTG---------QCSCKPNMT--GLACDQCTEGHWGLQELGCASCE 391
C + + +C G + C W +CE
Sbjct: 682 ECIKPVVQEVLTITPFQRLYRIGESIELTCPKGFVVAGPSRYTCQGNSWTPPISNSLTCE 741
Query: 392 CNAVGSVNNSCDQITGQCVCRKGVTGRTCD----KCRPDYFGFSVNGCTECASCEQSGMV 447
++ ++ G C + +G C + + + ++ +
Sbjct: 742 K-------DTLTKLKGHCQLGQKQSGSECICMSPEEDCSHHSEDLCVFDTDSNDYFTSPA 794
Query: 448 CSEESGQCVCPPLTRGDLCIQCAPNSYGYRPLLGCQPC 485
C + +C+ C L +
Sbjct: 795 CKFLAEKCLNNQQLHFLHIGSCQDGRQLEWGLERTRLS 832
Score = 35.6 bits (81), Expect = 0.045
Identities = 49/387 (12%), Positives = 86/387 (22%), Gaps = 44/387 (11%)
Query: 100 VREPGYTGPLCDRCAYGYFGFPSQPNGSCE---PCNCSPYGSVSDECHEESGQCNCRIGI 156
++E C G P+ C +S + + G
Sbjct: 490 LQEYAAKFDPCQCAPCPNNGRPTLSGTECLCVCQSGTYGENCEKQSPDYKSNAVDGQWGC 549
Query: 157 TGRDCSQCEPRHILTSRGCASCEDGYIGDHCESCDAGYYGNPTELGGSCVPCSCGGGPCD 216
+ +R C + G CE + +
Sbjct: 550 WSSWSTCDATYKRSRTRECNNPAPQRGGKRCEGEKRQEEDCTFSIMENNGQPCINDDEEM 609
Query: 217 ASTGECVQCRGNT--------EGARCERCKPLYYGDPRTGDCKPCECNTSGSLGDECDSI 268
+ G + G+ C T G C
Sbjct: 610 KEVDLPEIEADSGCPQPVPPENGFIRNEKQLYLVGEDVEISCLTG-FETVGYQYFRCLPD 668
Query: 269 SGQCQCKENRAGRTCNLALDCPPCDCDPLGTLSVPQPCHPV--SGTCYCQPG--VTGDRC 324
Q C +C + T++ Q + + S C G V G
Sbjct: 669 GTWRQG-----DVECQ-RTECIKPVVQEVLTITPFQRLYRIGESIELTCPKGFVVAGPSR 722
Query: 325 DQCDTGYWNFTVNGCTSCNCN-----------RDGSLHFSCDVHTGQCSCKPNMTGLACD 373
C W ++ +C + C + + C + L
Sbjct: 723 YTCQGNSWTPPISNSLTCEKDTLTKLKGHCQLGQKQSGSECICMSPEEDCSHHSEDLCVF 782
Query: 374 QCTEGHWGLQELGCASCECNAVGSVNNSCDQITGQCVCRKG---VTGRTCDKCRPDYFGF 430
+ +C+ A +NN C+ G G + +
Sbjct: 783 DTDSNDYF----TSPACKFLAEKCLNNQQLHFLHIGSCQDGRQLEWGLERTRLSSNSTKK 838
Query: 431 SVNGCTECASCEQSGMVCSEESGQCVC 457
G C E+ CS + +CVC
Sbjct: 839 ESCGYDTCYDWEK----CSASTSKCVC 861
>1yo8_A Thrombospondin-2; EGF, Ca(2+)-binding domains, lectin domain,
disulfide, cell; HET: NAG MAN; 2.60A {Homo sapiens} PDB:
2rhp_A*
Length = 634
Score = 40.0 bits (93), Expect = 0.002
Identities = 33/198 (16%), Positives = 45/198 (22%), Gaps = 25/198 (12%)
Query: 174 GCASCEDGYIGDHCESCDAGYYGNPTELGGSCV------------PCSCGGGPCDASTGE 221
C + G HC C Y GN G PC C E
Sbjct: 59 KVPRCVNTQPGFHCLPCPPRYRGNQPVGVGLEAAKTEKQVCEPENPCKDKTHNCHKH-AE 117
Query: 222 CVQCRGNTEGARCERCKPLYYGDPRTGD---------CKPCECNTSGSLGDECDSISGQC 272
C+ ++ C+ Y GD C T+ + D+
Sbjct: 118 CIYLGHFSDPMYKCECQTGYAGDGLICGEDSDLDGWPNLNLVCATNATYHCIKDNCPHLP 177
Query: 273 QCKENRAGRTCNLALDCPPCDCDPLGTLSVPQPCHPVSGTCYCQPGVTGDRCDQC---DT 329
+ + D D + GDRCD C
Sbjct: 178 NSGQEDFDKDGIGDACDDDDDNDGVTDEKDNCQLLFNPRQADYDKDEVGDRCDNCPYVHN 237
Query: 330 GYWNFTVNGCTSCNCNRD 347
T N C+ D
Sbjct: 238 PAQIDTDNNGEGDACSVD 255
>3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex,
beta propeller, cholesterol clearance, PCSK
autocatalytic cleavage; 7.01A {Homo sapiens}
Length = 791
Score = 37.5 bits (86), Expect = 0.013
Identities = 44/334 (13%), Positives = 74/334 (22%), Gaps = 25/334 (7%)
Query: 141 DECHEESGQCNCRIGITGRDCSQCEPRH-ILTSRGCASCEDGYIGDHCESCDAGYYGNPT 199
+C + S + +C + G QC I C + D G
Sbjct: 129 RDCLDGSDEASCPVLTCGPASFQCNSSTCIPQLWACDNDPDCEDGSDEWPQRCRGLYVFQ 188
Query: 200 ELGGSCVP--CSCGGGPCDASTGEC---VQCRGNTEGARCE--------------RCKPL 240
C C G C S+ C C+ ++ C C
Sbjct: 189 GDSSPCSAFEFHCLSGECIHSSWRCDGGPDCKDKSDEENCAVATCRPDEFQCSDGNCIHG 248
Query: 241 YYGDPRTGDCKPCECNTSGSLGDECDSISGQCQCKENR---AGRTCNLALDCPPC-DCDP 296
R DCK C+ + +C + CN+A DC D
Sbjct: 249 SRQCDREYDCKDMSDEVGCVNVTLCEG-PNKFKCHSGECITLDKVCNMARDCRDWSDEPI 307
Query: 297 LGTLSVPQPCHPVSGTCYCQPGVTGDRCDQCDTGYWNFTVNGCTSCNCNRDGSLHFSCDV 356
+ + + C G C D C + C
Sbjct: 308 KECGTNECLDNNGGCSHVCNDLKIGYECLCPDGFQLVAQRRCEDIDECQDPDTCSQLCVN 367
Query: 357 HTGQCSCKPNMTGLACDQCTEGHWGLQELGCASCECNAVGSVNNSCDQITGQCVCRKGVT 416
G C+ + V + + T + V
Sbjct: 368 LEGGYKCQCEEGFQLDPHTKACKAVGSIAYLFFTNRHEVRKMTLDRSEYTSLIPNLRNVV 427
Query: 417 GRTCDKCRPDYFGFSVNGCTECASCEQSGMVCSE 450
+ + ++ C++ S
Sbjct: 428 ALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSS 461
Score = 34.4 bits (78), Expect = 0.12
Identities = 33/257 (12%), Positives = 55/257 (21%), Gaps = 12/257 (4%)
Query: 121 PSQPNGSCEPCNCSPYGSVSDECHEESGQCNCRIGITGRDCSQCEPRHILTSRGCAS--- 177
G PC+ + +S EC S +C+ DC C
Sbjct: 184 LYVFQGDSSPCSAFEFHCLSGECIHSSWRCDGG-----PDCKDKSDEENCAVATCRPDEF 238
Query: 178 -CEDGYIGDHCESCDAGYYGNPTELGGSCVPCSCGGGPCDASTGECVQCRGNTEGARCER 236
C DG CD Y V C + +C T C
Sbjct: 239 QCSDGNCIHGSRQCDREYDCKD---MSDEVGCVNVTLCEGPNKFKCHSGECITLDKVCNM 295
Query: 237 CKPLYYGDPRTGDCKPCECNTSGSLGDECDSISGQCQCKENRAGRTCNLALDCPPCDCDP 296
+ + G + + +A +
Sbjct: 296 ARDCRDWSDEPIKECGTNECLDNNGGCSHVCNDLKIGYECLCPDGFQLVAQRRCEDIDEC 355
Query: 297 LGTLSVPQPCHPVSGTCYCQPGVTGDRCDQCDTGYWNFTVNGCTSCNCNRDGSLHFSCDV 356
+ Q C + G CQ ++ N + +
Sbjct: 356 QDPDTCSQLCVNLEGGYKCQCEEGFQLDPHTKACKAVGSIAYLFFTNRHEVRKMTLDRSE 415
Query: 357 HTGQCSCKPNMTGLACD 373
+T N+ L +
Sbjct: 416 YTSLIPNLRNVVALDTE 432
Score = 28.3 bits (62), Expect = 8.4
Identities = 59/387 (15%), Positives = 86/387 (22%), Gaps = 38/387 (9%)
Query: 132 NCSPYGSVSDECHEESGQCNCRIGI--TGRDCSQCEPRHILTSRGCAS----CEDGYIGD 185
C P DE G+C R + + RDC C C
Sbjct: 100 GCPPKTCSQDEFRCHDGKCISRQFVCDSDRDCLDGSDEASCPVLTCGPASFQCNSSTCIP 159
Query: 186 HCESCDAGYYGNPTELGGSCVPCSCGGGPCDASTGECVQCRGNTEGARCERCKPLYYGDP 245
+CD D+S + + C +
Sbjct: 160 QLWACDNDPDCEDGSDEWPQRCRGLYVFQGDSSPCSAFEFHCLSG-----ECIHSSWRCD 214
Query: 246 RTGDCKPCE----CNTSGSLGDECDSISGQCQCKENRAGRTCNLALDCPPCDCDPLGTLS 301
DCK C + DE G C R C+ DC D +G ++
Sbjct: 215 GGPDCKDKSDEENCAVATCRPDEFQCSDGNCI----HGSRQCDREYDCKDM-SDEVGCVN 269
Query: 302 VPQPCHPVSGTCYCQPGVTGDRCDQCDTGYWNFTVNGCTSC------NCNRDGSLHFSCD 355
V P C G C+ C G+ +
Sbjct: 270 VTLCEGP--NKFKCHSGECITLDKVCN---------MARDCRDWSDEPIKECGTNECLDN 318
Query: 356 VHTGQCSCKPNMTGLACDQCTEGHWGLQELGCASCECNAVGSVNNSCDQITGQCVCRKGV 415
C G C Q EC + + C + G C+
Sbjct: 319 NGGCSHVCNDLKIGYECLCPDGFQLVAQRRCEDIDECQDPDTCSQLCVNLEGGYKCQCEE 378
Query: 416 TGRTCDKCRPDYFGFSVNGCTECASCEQSGMVCSEESGQCVCPPLTRGDLC-IQCAPNSY 474
+ + S+ E M + P L + A N
Sbjct: 379 GFQLDPHTKACKAVGSIAYLFFTNRHEVRKMTLDRSEYTSLIPNLRNVVALDTEVASNRI 438
Query: 475 GYRPLLGCQPCRCDLRGSMRAQGIVTV 501
+ L C L + TV
Sbjct: 439 YWSDLSQRMICSTQLDRAHGVSSYDTV 465
>2f83_A Coagulation factor XI; protease, apple domain, hydrolase; HET: NAG;
2.87A {Homo sapiens} PDB: 2j8j_A 2j8l_A
Length = 625
Score = 36.4 bits (84), Expect = 0.023
Identities = 20/150 (13%), Positives = 39/150 (26%), Gaps = 16/150 (10%)
Query: 143 CHEESGQCNCRIGITGRDCSQCEPRHILTSRGCASCEDGYIGDHCESCDAGYYGNPTELG 202
+ C + +G ++ + L+ SC C + +Y + LG
Sbjct: 248 KESQRNLCLLKTSESGLPSTRIKKSKALSGFSLQSCRHSI----PVFCHSSFYHDTDFLG 303
Query: 203 GS-CVPCSCGGGPCDASTGECVQCRGNTEGARCERCKPLYYGDPRTGDCKPCECNTSGSL 261
+ + C V+C+ T Y + + +C S
Sbjct: 304 EELDIVAAKSHEACQKLCTNAVRCQFFT-----------YTPAQASCNEGKGKCYLKLSS 352
Query: 262 GDECDSISGQCQCKENRAGRTCNLALDCPP 291
I R C + +C
Sbjct: 353 NGSPTKILHGRGGISGYTLRLCKMDNECTT 382
Score = 30.2 bits (68), Expect = 2.0
Identities = 15/125 (12%), Positives = 22/125 (17%), Gaps = 10/125 (8%)
Query: 305 PCHPVSGTCYCQPGVTGDRCDQCDTGYWNFTVNGCTSCNCNRDGSLHFSCDVHTGQCSCK 364
S ++G C F + L
Sbjct: 261 ESGLPSTRIKKSKALSGFSLQSCRHSIPVFCHSSFYHDTDFLGEELDIVA------AKSH 314
Query: 365 PNMTGLACDQCTEGHWGLQEL----GCASCECNAVGSVNNSCDQITGQCVCRKGVTGRTC 420
L + + +C S N S +I G T R C
Sbjct: 315 EACQKLCTNAVRCQFFTYTPAQASCNEGKGKCYLKLSSNGSPTKILHGRGGISGYTLRLC 374
Query: 421 DKCRP 425
Sbjct: 375 KMDNE 379
>1n8y_C Protooncoprotein; tyrosin kinase receptor, cell surface receptor,
transferase; HET: NAG; 2.40A {Rattus norvegicus} SCOP:
c.10.2.5 c.10.2.5 g.3.9.1 g.3.9.1 PDB: 1n8z_C* 3be1_A*
1s78_A* 3mzw_A* 3n85_A* 2a91_A* 3h3b_A
Length = 608
Score = 36.5 bits (83), Expect = 0.024
Identities = 40/361 (11%), Positives = 61/361 (16%), Gaps = 8/361 (2%)
Query: 130 PCNCSPYGSVSDECHEESGQCNCRIGITGRDCSQCEPRHILTSRGCASCEDGYIGDHC-E 188
C +C R+ C +C C
Sbjct: 186 ESPEDCQILTGTICTSGCARCKGRLPTDCCHEQCAAGCTGPKHSDCLACLHFNHSGICEL 245
Query: 189 SCDAGYYGNPTELGGSCVPCSCGGGPCDASTGECVQCRGNTEGARCERCKPLYYGDPRTG 248
C A N P T G+ C P
Sbjct: 246 HCPALVTYNTDTFESMHNPEGRYTFGASCVTTCPYNYLSTEVGSCTLVCPPNNQEVTAED 305
Query: 249 DCKPCECNTSGSLGDECDSISGQCQCKENRAGRTCNLALDCPPCDCDPLGTLSVPQPCHP 308
+ CE + + C
Sbjct: 306 GTQRCEKCSKPCARVCYGLGMEHLRGARAITSDNVQEFDGCKKIFGSLAFLPESFDGDPS 365
Query: 309 VSGTCYCQPGVTGDRCDQCDTGYWNFTVNGCTSCNCNRDGSLHFSCDVHTGQCSCKPNMT 368
+ + TGY + + + + F
Sbjct: 366 SGIAPLRPEQLQVFETLEEITGYLYISAWPDSLRDLSV-----FQNLRIIRGRILHDGAY 420
Query: 369 GLACDQCTEGHWGLQELGCASCECNAVGSVNNSCDQITGQCVCRKGVTGRTCDKCRPDYF 428
L GL+ L + + C T +
Sbjct: 421 SLTLQGLGIHSLGLRSLRELGSGLALIHRNAHLCFVHTVPWDQLFRNPHQALLHSGNRPE 480
Query: 429 GFSVNGCTECASCEQSGMVCSEESGQCV-CPPLTRGDLCI-QCAPNSYGYRPLLGCQPCR 486
C S G QCV C RG C+ +C R + + C
Sbjct: 481 EDCGLEGLVCNSLCAHGHCWGPGPTQCVNCSHFLRGQECVEECRVWKGLPREYVSDKRCL 540
Query: 487 C 487
Sbjct: 541 P 541
Score = 29.6 bits (65), Expect = 3.0
Identities = 22/207 (10%), Positives = 40/207 (19%), Gaps = 4/207 (1%)
Query: 140 SDECHEESGQCNCRIGITGRDCSQCEPRHILTSRGCASCEDGYIGDHCESCDAGYYGNPT 199
D + + I + + C +G
Sbjct: 149 KDVFRKNNQLAPVDIDTNRSRACPPCAPACKDNHCWGESPEDCQILTGTICTSGCARCKG 208
Query: 200 ELGGSCVPCSCGGGPCDASTGECVQCRGNTEGARC-ERCKPLYYGDPRTGDCKPCECNTS 258
L C C G +C+ C C C L + T +
Sbjct: 209 RLPTDCCHEQCAAGCTGPKHSDCLACLHFNHSGICELHCPALVTYNTDTFESMHNPEGRY 268
Query: 259 GSLGDECDSISGQCQCKENRAGRTCNLALDCPPCDCDPLGTLSVPQPCHPVSGTCYCQPG 318
+ + +C L + + C G
Sbjct: 269 TFGASCVTT---CPYNYLSTEVGSCTLVCPPNNQEVTAEDGTQRCEKCSKPCARVCYGLG 325
Query: 319 VTGDRCDQCDTGYWNFTVNGCTSCNCN 345
+ R + T +GC +
Sbjct: 326 MEHLRGARAITSDNVQEFDGCKKIFGS 352
>2vj2_A Jagged-1; signalling, polymorphism, glycoprotein, extracellular,
developmental protein, notch signaling pathway, EGF,
DSL, notch, calcium, membrane; 2.50A {Homo sapiens} PDB:
2kb9_A
Length = 169
Score = 34.3 bits (79), Expect = 0.049
Identities = 24/117 (20%), Positives = 35/117 (29%), Gaps = 30/117 (25%)
Query: 310 SGTCYCQPGVTGDRCDQCDTGYWNFTVNGCTSCNCNRDGSLHFSCDVHTGQCSCKPNMTG 369
C G C++ C D H++CD G +C G
Sbjct: 16 RSAVTCDDYYYGFGCNK--------------FCRPRDDFFGHYACD-QNGNKTCMEGWMG 60
Query: 370 LACDQCTEGHWGLQELGCASCECNAVGSVNNSCDQITGQCVCRKGVTGRTCDKCRPD 426
C++ C S + ++ G C C+ G G CDKC P
Sbjct: 61 PECNRA---------------ICRQGCSPKHGSCKLPGDCRCQYGWQGLYCDKCIPH 102
Score = 33.1 bits (76), Expect = 0.100
Identities = 37/200 (18%), Positives = 52/200 (26%), Gaps = 50/200 (25%)
Query: 269 SGQCQCKENRAGRTCNLALDCPPCDCDPLGTLSVPQPCHPVSGTCYCQPGVTGDRCDQCD 328
C + G CN +G C G G C++
Sbjct: 16 RSAVTCDDYYYGFGCNKFCRPRDDFFG--------HYACDQNGNKTCMEGWMGPECNR-- 65
Query: 329 TGYWNFTVNGCTSCNCNRDGSLHFSCDVHTGQCSCKPNMTGLACDQCTEGHWGLQELGCA 388
+ + G C C+ GL CD+C
Sbjct: 66 ------AICRQGCSPKH-------GSCKLPGDCRCQYGWQGLYCDKCI------------ 100
Query: 389 SCECNAVGSVNNSCDQITGQCVCRKGVTGRTCDKCRPDYFGFSVNGCTECASCEQSGMVC 448
G V+ C++ QC+C G+ CDK +N C C G
Sbjct: 101 ----PHPGCVHGICNE-PWQCLCETNWGGQLCDK--------DLNYCGTHQPCLNGGTCS 147
Query: 449 SEESG--QCVCPPLTRGDLC 466
+ QC CP G C
Sbjct: 148 NTGPDKYQCSCPEGYSGPNC 167
Score = 32.7 bits (75), Expect = 0.14
Identities = 43/189 (22%), Positives = 58/189 (30%), Gaps = 43/189 (22%)
Query: 236 RCKPLYYGDPRTGDCKPCECNTSGSLGDECDSISGQCQCKENRAGRTCNLALDCPPCDCD 295
C YYG C+P + +G C E G CN A+ C
Sbjct: 20 TCDDYYYGFGCNKFCRPRDDFFGHY----ACDQNGNKTCMEGWMGPECNRAICRQGC--- 72
Query: 296 PLGTLSVPQPCHP---VSGTCYCQPGVTGDRCDQCDTGYWNFTVNGCTSCNCNRDGSLHF 352
P H + G C CQ G G CD+C C H
Sbjct: 73 --------SPKHGSCKLPGDCRCQYGWQGLYCDKC-----------IPHPGCV-----HG 108
Query: 353 SCDVHTGQCSCKPNMTGLACDQCTEGHWGLQELGCASCECNAVGSVNNSCDQITGQCVCR 412
C QC C+ N G CD+ C + + G ++ QC C
Sbjct: 109 IC-NEPWQCLCETNWGGQLCDKDLNY--------CGTHQPCLNGGTCSNTGPDKYQCSCP 159
Query: 413 KGVTGRTCD 421
+G +G C+
Sbjct: 160 EGYSGPNCE 168
Score = 27.7 bits (62), Expect = 7.2
Identities = 19/129 (14%), Positives = 34/129 (26%), Gaps = 29/129 (22%)
Query: 344 CNRDGSLHFSCDVHTGQCSCKPNMTGLACDQCTEGHWGLQELGCASCECNAVGSVNNSCD 403
+ H S + +C G C++ C + +
Sbjct: 3 GSHHHHHHGSIE-GRSAVTCDDYYYGFGCNKF-----------CRPRDDF----FGHYAC 46
Query: 404 QITGQCVCRKGVTGRTCDKCRPDYFGFSVNGCTECASCEQSGMVCSEESGQCVCPPLTRG 463
G C +G G C++ + G + G C C +G
Sbjct: 47 DQNGNKTCMEGWMGPECNRA-----------ICRQGCSPKHG--SCKLPGDCRCQYGWQG 93
Query: 464 DLCIQCAPN 472
C +C P+
Sbjct: 94 LYCDKCIPH 102
Score = 27.7 bits (62), Expect = 7.4
Identities = 37/161 (22%), Positives = 47/161 (29%), Gaps = 36/161 (22%)
Query: 189 SCDAGYYGNPTELGGSCVPCSCGGGPCDASTGECVQCRGNTEGARCERCKPLYYGDPRTG 248
+CD YYG G CD G C G C R P+ G
Sbjct: 20 TCDDYYYGFGCNKFCRPRDDFFGHYACD-QNGNKT-CMEGWMGPECNRAICRQGCSPKHG 77
Query: 249 DCKP-----CECNTSGSLGDECDSI----------SGQCQCKENRAGRTCNLALDCPPCD 293
CK C+ G D+C QC C+ N G+ C+ L+
Sbjct: 78 SCKLPGDCRCQYGWQGLYCDKCIPHPGCVHGICNEPWQCLCETNWGGQLCDKDLNYCGT- 136
Query: 294 CDPLGTLSVPQPCH---------PVSGTCYCQPGVTGDRCD 325
QPC P C C G +G C+
Sbjct: 137 ---------HQPCLNGGTCSNTGPDKYQCSCPEGYSGPNCE 168
>2ahx_A P180ERBB4, receptor tyrosine-protein kinase ERBB-4; X-RAY
crystallography, neuregulins, heparin-binding, cell CY
signaling protein; HET: NAG NDG; 2.40A {Homo sapiens}
PDB: 3u2p_A*
Length = 617
Score = 35.4 bits (80), Expect = 0.051
Identities = 44/383 (11%), Positives = 88/383 (22%), Gaps = 9/383 (2%)
Query: 97 IMRVREPGYTGPLCDRCAYGYFGFPSQPNGSCEPCNCSPYGSVSDECHEESGQCNCRIGI 156
I+R P + + G G C + +++ E C
Sbjct: 142 IVRNPWPSNLTLVSTNGSSGCGRCHKSCTGRCWGPTENHCQTLTRTVCAEQCDGRCYGPY 201
Query: 157 TGRDCSQ--CEPRHILTSRGCASCEDGYIGDHC-ESCDAGYYGNPTELGGSCVPCSCGGG 213
C + C +C + C C + NPT
Sbjct: 202 VSDCCHRECAGGCSGPKDTDCFACMNFNDSGACVTQCPQTFVYNPT--TFQLEHNFNAKY 259
Query: 214 PCDASTGECVQCRGNTEGARCERCKPLYYGDPRTGDCKPCECNTSGSLGDECDSISGQCQ 273
A + + + C R P + K C+ T +G
Sbjct: 260 TYGAFCVKKCPHNFVVDSSSCVRACPSSKMEVEENGIKMCKPCTDICPKACDGIGTGSLM 319
Query: 274 CKENRAGRTCNLALDCPPCDCDPLGTLSVPQPCHPVSGTCYCQPGVTGDRCDQCDTGYWN 333
+ + ++C + + + ++ + + R + TG+ N
Sbjct: 320 SAQTVDSSNIDKFINCTKINGNLIFLVTGIHGDPYNAIEAIDPEKLNVFRTVREITGFLN 379
Query: 334 FTVNGCTSCNCNRDGSLHFSCDVHTGQCSCKPNMTGLACDQCTEGHWGLQELGCASCECN 393
+ D S+ + G+ + Q ++
Sbjct: 380 I----QSWPPNMTDFSVFSNLVTIGGRVLYSGLSLLILKQQGITSLQFQSLKEISAGNIY 435
Query: 394 AVGSVNNSCDQITGQCVCRKGVTGRTCDKCRPDYFGFSVNGCTECASCEQSGMVCSEESG 453
+ N + R + + G C G
Sbjct: 436 ITDNSNLCYYHTINWTTLFSTINQRIVIRDNRKAENCTAEGMVCNHLCSSDGCWGPGPDQ 495
Query: 454 QCVCPPLTRGDLCIQCAPNSYGY 476
C +RG +CI+ G
Sbjct: 496 CLSCRRFSRGRICIESCNLYDGE 518
>1igr_A Insulin-like growth factor receptor 1; hormone receptor, insulin
receptor family; HET: NAG FUC BMA MAN; 2.60A {Homo
sapiens} SCOP: c.10.2.5 c.10.2.5 g.3.9.1
Length = 478
Score = 35.2 bits (80), Expect = 0.052
Identities = 28/190 (14%), Positives = 46/190 (24%), Gaps = 27/190 (14%)
Query: 300 LSVPQPCHPVSGTCYCQPGVTGDRCDQCDTGYWNFTVNGCTSCNCNRDGSLHFSCDVHTG 359
L + V + G + T+N + C C G
Sbjct: 131 LDAVSNNYIVGNKPPKECGDLCPGTMEEKPMCEKTTINNEYNYRCWTTNRCQKMCPSTCG 190
Query: 360 QCSCKPNMTGLACDQCTEGHWGLQELGCASCECNAVGSVNNSCDQITGQCVCRKGVTGRT 419
+ +C N + C C + ++ D T CR
Sbjct: 191 KRACTEN-----NECC-----------HPECLGS-----CSAPDNDTACVACRHYYYAGV 229
Query: 420 C-DKCRPDYFGFSVNGCTECASCEQSGMVCSEESGQCVCPPLTRGDLCIQCAPNSYGYRP 478
C C P+ + F C + C S + C+Q P+ + R
Sbjct: 230 CVPACPPNTYRFEGWRCVDRDFCANILSAES----SDSEGFVIHDGECMQECPSGF-IRN 284
Query: 479 LLGCQPCRCD 488
C
Sbjct: 285 GSQSMYCIPC 294
Score = 32.9 bits (74), Expect = 0.30
Identities = 26/191 (13%), Positives = 45/191 (23%), Gaps = 9/191 (4%)
Query: 195 YGNPTELGGSCVPCSCGGGPCDASTGECVQCRGNTEGARCER-CKPLYYGDPRTGDCKPC 253
P E G C C+ +T RC++ C T + + C
Sbjct: 142 NKPPKECGDLCPGTMEEKPMCEKTTINNEYNYRCWTTNRCQKMCPSTCGKRACTENNECC 201
Query: 254 ECNTSGSLGDECDSISGQCQCKENRAGRTCNLALDCPP----CDCDPLGTLSVPQPCHPV 309
GS D+ + C+ C CPP +
Sbjct: 202 HPECLGS-CSAPDNDTACVACRHYYYAGVC--VPACPPNTYRFEGWRCVDRDFCANILSA 258
Query: 310 SGTCYCQPGVTGDRC-DQCDTGYWNFTVNGCTSCNCNRDGSLHFSCDVHTGQCSCKPNMT 368
+ + C +C +G+ C + T +
Sbjct: 259 ESSDSEGFVIHDGECMQECPSGFIRNGSQSMYCIPCEGPCPKVCEEEKKTKTIDSVTSAQ 318
Query: 369 GLACDQCTEGH 379
L +G+
Sbjct: 319 MLQGCTIFKGN 329
>1mox_A Epidermal growth factor receptor; EGFR, receptor, complex,
transferase-growth F complex; HET: NAG FUC BMA MAN;
2.50A {Homo sapiens} SCOP: c.10.2.5 c.10.2.5 g.3.9.1
g.3.9.1
Length = 501
Score = 34.9 bits (79), Expect = 0.077
Identities = 34/208 (16%), Positives = 50/208 (24%), Gaps = 13/208 (6%)
Query: 160 DCSQCEPRHILTSRGCASCEDGYIGDHCESCDAGYYGNPTELGGSCVPCSCGGGPCDAST 219
C +C+P S A E+ + C C G
Sbjct: 162 SCQKCDPSCPNGSCWGAGEENCQKLTKIICAQQCSGRCRGKSPSDCCHNQCAAGCTGPRE 221
Query: 220 GECVQCRGNTEGARC-ERCKPLYYGDPRTGDCKPCECNTSGSLGDECDSISGQC--QCKE 276
+C+ CR + A C + C PL +P T S C +C
Sbjct: 222 SDCLVCRKFRDEATCKDTCPPLMLYNPTTYQMDVNPEG--------KYSFGATCVKKCPR 273
Query: 277 NRAGRTCNLALDCPPCDCDPLGTLSVPQPCHPVSGTCYCQPGVTGDRCDQCDTGYWNFTV 336
N + D + V + C G C G + +
Sbjct: 274 NYVVTDHGSCVRACGADSYEMEEDGVRK-CKKCEGPCRKVCNGIGIGEFKDSLSINATNI 332
Query: 337 NGCTSCNCNRDGSLHFSCDVHTGQCSCK 364
+C G LH G
Sbjct: 333 KHFKNCTSI-SGDLHILPVAFRGDSFTH 359
Score = 29.1 bits (64), Expect = 4.5
Identities = 23/180 (12%), Positives = 34/180 (18%), Gaps = 6/180 (3%)
Query: 315 CQPGVTGDRCDQCDTGYWNFTVNGCTSCNCNRDGSLHFSCDVHTGQCSCKPNMTGLACDQ 374
C P C + C G C TG
Sbjct: 166 CDPSCPNGSCWGAGEENCQKLTKIICAQQC--SGRCRGKSPSDCCHNQCAAGCTGPRESD 223
Query: 375 CTEGHWGLQELGCASCECNAVGSVNNSCDQITGQCVCRKGVTGRTCDKCRPDYFGFSVNG 434
C E C C + N + Q+ + KC +Y
Sbjct: 224 CLVCRKFRDEATCKDT-CPPLMLYNPTTYQMDVNPEGKYSFGATCVKKCPRNYVVTDHGS 282
Query: 435 CTECASCEQSGMVCSEESGQCVCPPLTRGDLCIQCAPNSYGYRPLLGCQPCRCDLRGSMR 494
C + EE G C + ++ L +
Sbjct: 283 CVRACG---ADSYEMEEDGVRKCKKCEGPCRKVCNGIGIGEFKDSLSINATNIKHFKNCT 339
Score = 28.7 bits (63), Expect = 5.0
Identities = 26/192 (13%), Positives = 44/192 (22%), Gaps = 21/192 (10%)
Query: 326 QCDTGYWNFTVNGCTSCNC----NRDGSLHFSCDVHTGQCSC--------KPNMTGLACD 373
++ W V+ N CD SC + +
Sbjct: 134 NVESIQWRDIVSSDFLSNMSMDFQNHLGSCQKCDPSCPNGSCWGAGEENCQKLTKIICAQ 193
Query: 374 QCTEGHWGLQELGC--ASCECNAVGSVNNSCDQITGQCVCRKGVTGRTC-DKCRPDYFGF 430
QC+ G C C G + C CRK TC D C P
Sbjct: 194 QCSGRCRGKSPSDCCHNQCAAGCTGPRESDCLV------CRKFRDEATCKDTCPPLMLYN 247
Query: 431 SVNGCTECASCEQSGMVCSEESGQCVCPPLTRGDLCIQCAPNSYGYRPLLGCQPCRCDLR 490
+ + + +T C++ G + C+
Sbjct: 248 PTTYQMDVNPEGKYSFGATCVKKCPRNYVVTDHGSCVRACGADSYEMEEDGVRKCKKCEG 307
Query: 491 GSMRAQGIVTVD 502
+ + +
Sbjct: 308 PCRKVCNGIGIG 319
>1yy9_A Epidermal growth factor receptor; cell surface receptor, tyrosine
kinase, glycoprotein, antigen:antibody complex, FAB
fragment, antitumor, drug; HET: NDG NAG BMA MAN; 2.60A
{Homo sapiens} SCOP: c.10.2.5 c.10.2.5 g.3.9.1 g.3.9.1
PDB: 3qwq_A* 1nql_A* 3b2v_A* 1ivo_A* 3njp_A*
Length = 624
Score = 34.2 bits (77), Expect = 0.11
Identities = 41/378 (10%), Positives = 87/378 (23%), Gaps = 17/378 (4%)
Query: 124 PNGSCEPCNCSPYGSVSDECHEESGQCNCRIGITGRDCSQ--CEPRHILTSRGCASCEDG 181
PNGSC ++ + CR C C C
Sbjct: 171 PNGSCWGAGEENCQKLTKIICAQQCSGRCRGKSPSDCCHNQCAAGCTGPRESDCLVCRKF 230
Query: 182 YIGDHC-ESCDAGYYGNPTELGGSCVPCSCGGGPCDAS-TGECVQCRGNTEGARCERCKP 239
C ++C NPT G A+ +C + T+ C R
Sbjct: 231 RDEATCKDTCPPLMLYNPT--TYQMDVNPEGKYSFGATCVKKCPRNYVVTDHGSCVRACG 288
Query: 240 LYYGDPRTGDCKPCECNTSGSLGDECDSISGQCQCKENRAGRTCNLALDCPPCDCDPLGT 299
+ + C+ G+ + + +C D
Sbjct: 289 ADSYEMEEDGVRKCKKCEGPCRKVCNGIGIGEFKDSLSINATNIKHFKNCTSISGDLHIL 348
Query: 300 LSVPQPCHPVSGTCYCQPGVTGDRCDQCDTGYWNFTVNGCTSCNCNRDGSLHFSCDVHTG 359
+ + + + TG+ + + +L
Sbjct: 349 PVAFRGDSFTHTPPLDPQELDILKTVKEITGFLLIQAWPENRTDLHAFENLEIIR--GRT 406
Query: 360 QCSCKPNMTGLACDQCTEGHWGLQELGCASCECNAVGSVNNSCDQITGQCVCRKGVTGRT 419
+ + ++ ++ + + G L+E+ + ++ + + G +
Sbjct: 407 KQHGQFSLAVVSLNITSLGLRSLKEISDGDVIISGNKNLCYANTINWKKLFGTSGQKTKI 466
Query: 420 CDKCRPDYFGF---------SVNGCTECASCEQSGMVCSEESGQCVCPPLTRGDLCIQCA 470
+ S GC + +CV +
Sbjct: 467 ISNRGENKCKATGQVCHALCSPEGCWGPEPRDCVSCRNVSRGRECVDKCKLLEGEPREFV 526
Query: 471 PNSYGYRPLLGCQPCRCD 488
NS + C P +
Sbjct: 527 ENSECIQCHPECLPQAMN 544
Score = 31.5 bits (70), Expect = 0.80
Identities = 32/208 (15%), Positives = 48/208 (23%), Gaps = 9/208 (4%)
Query: 160 DCSQCEPRHILTSRGCASCEDGYIGDHCESCDAGYYGNPTELGGSCVPCSCGGGPCDAST 219
C +C+P S A E+ + C C G
Sbjct: 162 SCQKCDPSCPNGSCWGAGEENCQKLTKIICAQQCSGRCRGKSPSDCCHNQCAAGCTGPRE 221
Query: 220 GECVQCRGNTEGARC-ERCKPLYYGDPRTGDCKPCECNTSGSLGDECDSISGQCQCKENR 278
+C+ CR + A C + C PL +P T +C N
Sbjct: 222 SDCLVCRKFRDEATCKDTCPPLMLYNPTTYQMDVNPEGKYSFGATCVK------KCPRNY 275
Query: 279 AGRTCNLALDCPPCDCDPLGTLSVPQPCHPVSGTCYCQPGVTGDRCDQCDTGYWNFTVNG 338
+ D + V + C G C G + +
Sbjct: 276 VVTDHGSCVRACGADSYEMEEDGVRK-CKKCEGPCRKVCNGIGIGEFKDSLSINATNIKH 334
Query: 339 CTSCNCNRDGSLHFSCDVHTGQCSCKPN 366
+C G LH G
Sbjct: 335 FKNCTSI-SGDLHILPVAFRGDSFTHTP 361
Score = 28.1 bits (61), Expect = 8.2
Identities = 36/332 (10%), Positives = 65/332 (19%), Gaps = 20/332 (6%)
Query: 105 YTGPLCDRCAYGYFGFPSQPNGSCEPCNCSPYGSVSDEC------HEESGQCNCRIGITG 158
D C P+ P +G+ + + G C G
Sbjct: 232 DEATCKDTCPPLMLYNPTTYQMDVNPEGKYSFGATCVKKCPRNYVVTDHGSCVRACGADS 291
Query: 159 RDCSQCEPRHILTSRG-CASCEDGYIGDHCESCDAGYYGNPTELGGSCVPCSCGGGPCDA 217
+ + R G C +G + + N A
Sbjct: 292 YEMEEDGVRKCKKCEGPCRKVCNGIGIGEFKDSLSINATNIKHFKNCTSISGDLHILPVA 351
Query: 218 STGECVQCRGNTEGARCERCKPLYYGDPRTGDCKPCECNTSGSLGDECDSISGQCQCKEN 277
G+ + + K + E T + + I G+ +
Sbjct: 352 FRGDSFTHTPPLDPQELDILKTVKEITGFLLIQAWPENRTDLHAFENLEIIRGRTKQHGQ 411
Query: 278 RAGRTCNLALDCPPCDCDPLGTLSVPQPCHPVSGTCYCQPGVTGDRCDQCDTGYWNFTVN 337
+ +L + L + G + + T
Sbjct: 412 FSLAVVSLNITS----------LGLRSLKEISDGDVIISGNKNLCYANTINWKKLFGTSG 461
Query: 338 GCTSCNCNRDGSLHFSCDVHTGQCSCKPNMTGLACDQCTEGHWGLQELGC---ASCECNA 394
T NR + + G C + C
Sbjct: 462 QKTKIISNRGENKCKATGQVCHALCSPEGCWGPEPRDCVSCRNVSRGRECVDKCKLLEGE 521
Query: 395 VGSVNNSCDQITGQCVCRKGVTGRTCDKCRPD 426
+ + I C TC PD
Sbjct: 522 PREFVENSECIQCHPECLPQAMNITCTGRGPD 553
>2p28_B Integrin beta-2; hybrid domain, PSI domain, I-EGF DOM cell
adhesion; HET: NAG; 2.20A {Homo sapiens} PDB: 1l3y_A
Length = 217
Score = 32.7 bits (74), Expect = 0.20
Identities = 29/137 (21%), Positives = 36/137 (26%), Gaps = 14/137 (10%)
Query: 292 CDCDPLGTLSVPQPCH----PVSGTCYCQPGVTGDRCD-QCDTGYWNFTVNGCTSCNCNR 346
C+C CH G C C G G C+ Q C N +
Sbjct: 84 CECRCRDQSRDRSLCHGKGFLECGICRCDTGYIGKNCECQTQGRSSQELEGSCRKDNNSI 143
Query: 347 DGSLHFSCDVHTGQCSCKPNMTGLACDQCTEGHWGLQELGCASCEC--NAVGSVNNSCDQ 404
S C GQC C + + E +CE V
Sbjct: 144 ICSGLGDC--VCGQCLCHTSDVPGKL-----IYGQYCECDTINCERYNGQVCGGPGRGLC 196
Query: 405 ITGQCVCRKGVTGRTCD 421
G+C C G G C
Sbjct: 197 FCGKCRCHPGFEGSACQ 213
Score = 32.7 bits (74), Expect = 0.22
Identities = 24/129 (18%), Positives = 31/129 (24%), Gaps = 7/129 (5%)
Query: 202 GGSCVPCSCGGGPCDASTGECVQCRGNTEGARCERCKPLYYGDPRTGDCKPCECNTSGSL 261
S G G C +C G CE G C+ + S
Sbjct: 89 RDQSRDRSLCHGKGFLECGIC-RCDTGYIGKNCECQTQGRSSQELEGSCRKDNNSIICSG 147
Query: 262 GDECDSISGQCQCKENRAGRTCNLALDCPPCDCDPLGTLSVPQPCH----PVSGTCYCQP 317
+C + GQC C + C + G C C P
Sbjct: 148 LGDC--VCGQCLCHTSDVPGKLIYGQYCECDTINCERYNGQVCGGPGRGLCFCGKCRCHP 205
Query: 318 GVTGDRCDQ 326
G G C
Sbjct: 206 GFEGSACQH 214
Score = 31.9 bits (72), Expect = 0.41
Identities = 24/131 (18%), Positives = 29/131 (22%), Gaps = 11/131 (8%)
Query: 253 CECNTSGSLGDEC----DSISGQCQCKENRAGRTCNLALDCPPCDCDPLGTLSVPQPCHP 308
C C C G C+C G+ C L
Sbjct: 86 CRCRDQSRDRSLCHGKGFLECGICRCDTGYIGKNCEC--QTQGRSSQELEGSCRKDNNSI 143
Query: 309 V-SGTCYCQPGVTGDRCDQCDTGYWNFTVNGCTSCNCNRDGSLHFSCDVH----TGQCSC 363
+ SG C G C + NC R G+C C
Sbjct: 144 ICSGLGDCVCGQCLCHTSDVPGKLIYGQYCECDTINCERYNGQVCGGPGRGLCFCGKCRC 203
Query: 364 KPNMTGLACDQ 374
P G AC
Sbjct: 204 HPGFEGSACQH 214
Score = 30.4 bits (68), Expect = 1.2
Identities = 24/131 (18%), Positives = 33/131 (25%), Gaps = 8/131 (6%)
Query: 341 SCNCNRDGSLHFSCDVH----TGQCSCKPNMTGLACDQCTEGHWGLQELGCASCECNAVG 396
C C C G C C G C+ T + SC +
Sbjct: 85 ECRCRDQSRDRSLCHGKGFLECGICRCDTGYIGKNCECQT--QGRSSQELEGSCRKDNNS 142
Query: 397 SV-NNSCDQITGQCVCRKGVTGRTCDKCRPDYFGFSVNGCTECASCEQSGMVCSEESGQC 455
+ + D + GQC+C + C G G+C
Sbjct: 143 IICSGLGDCVCGQCLCHTSDVPGKLIYGQYCECDTINCERYNGQVCGGPGR-GLCFCGKC 201
Query: 456 VCPPLTRGDLC 466
C P G C
Sbjct: 202 RCHPGFEGSAC 212
>1n7d_A LDL receptor, low-density lipoprotein receptor; familial
hypercholesterolemia, cholestero metabolism, lipid
transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens}
SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1
g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A
1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A
Length = 699
Score = 33.2 bits (75), Expect = 0.27
Identities = 44/253 (17%), Positives = 64/253 (25%), Gaps = 22/253 (8%)
Query: 128 CEPCNCSPYGSVSD---ECHEESGQCNCRIGITGRDCSQCEPRHILTSRGCASCEDGYIG 184
C C P D +C + S + R R + S C G
Sbjct: 134 CNSSTCIPQLWACDNDPDCEDGSDEWPQR----CRGLYVFQGDSSPCSAFEFHCLSGECI 189
Query: 185 DHCESCDAGYYGNPTELGGSCVPCSCGGGPCDASTGECVQCRGNTEGARCERCKPLYYGD 244
CD G +C +C S G C+ + CK
Sbjct: 190 HSSWRCDGGPDCKDKSDEENCAVATCRPDEFQCSDGNCIHGSRQCDREY--DCKD----- 242
Query: 245 PRTGDCKPCECNTSGSLGDECDSISGQCQCKENRAGRTCNLALDCPPC-DCDPLGTLSVP 303
D C T ++ SG+C + CN+A DC D +
Sbjct: 243 --MSDEVGCVNVTLCEGPNKFKCHSGECITLDKV----CNMARDCRDWSDEPIKECGTNE 296
Query: 304 QPCHPVSGTCYCQPGVTGDRCDQCDTGYWNFTVNGCTSCNCNRDGSLHFSCDVHTGQCSC 363
+ + C G C C G+ C + +D V+
Sbjct: 297 CLDNNGGCSHVCNDLKIGYECL-CPDGFQLVAQRRCEDIDECQDPDTCSQLCVNLEGGYK 355
Query: 364 KPNMTGLACDQCT 376
G D T
Sbjct: 356 CQCEEGFQLDPHT 368
>3i2t_A Epidermal growth factor receptor, isoform A; EGFR, ectodomain,
unliganded, autoinhibited, ATP nucleotide-binding,
tyrosine-protein kinase; HET: NDG NAG BMA; 2.70A
{Drosophila melanogaster} PDB: 3ltf_A* 3ltg_A
Length = 551
Score = 32.7 bits (73), Expect = 0.32
Identities = 43/381 (11%), Positives = 80/381 (20%), Gaps = 12/381 (3%)
Query: 110 CDRCAYGYFGFPSQPNGSCEPCNCSPYGSVSDECHEESGQCNCRIGITGRDCSQCEPRHI 169
+R + P NC + ++ G+C
Sbjct: 161 PERECPKCHESCTHGCWGEGPKNCQKFSKLTCSPQCAGGRCYGPKPRECCHLFCAGGCTG 220
Query: 170 LTSRGCASCEDGYIGDHC-ESCDAGYYGNPTELGGSCVPCSCGGGPCDASTGECVQCRGN 228
T + C +C++ + C E C NPT G A+ +
Sbjct: 221 PTQKDCIACKNFFDEGVCKEECPPMRKYNPT--TYVLETNPEGKYAYGATCVKECPGHLL 278
Query: 229 TEGARCERCKPLYYGDPRTGDCKPCECNTSGSLGDECDSISGQCQCKENRAGRTCNLALD 288
+ C R P D G ++ T
Sbjct: 279 RDNGACVRSCPQDKMDKGGECVPCNGPCPKTCPGVTVLH----AGNIDSFRNCTVIDGNI 334
Query: 289 CPPCDCDPLGTLSVPQPCHPVSGTCYCQPGVTGDRCDQCDTGYWNFTVNGCTSCNCNRDG 348
+ + TGY +N + R+
Sbjct: 335 RILDQTFSGFQDVYANYTMGPRYIPLDPERLEVFSTVKEITGY----LNIEGTHPQFRNL 390
Query: 349 SLHFSCDVHTGQCSCKPNMTGLACDQCTEGHWGLQELGCASCECNAVGSVNNSCDQITGQ 408
S + + G+ + LA + + ++ L S + + C +
Sbjct: 391 SYFRNLETIHGRQLMESMFAALAIVKSSLYSLEMRNLKQISSGSVVIQHNRDLCYVSNIR 450
Query: 409 CVCRKGVTGRTCDKCRPDYFGFSVNGCTECASCEQSGMVCSEESGQCV-CPPLTRGDLCI 467
+ + T C+ + QC+ C CI
Sbjct: 451 WPAIQKEPEQKVWVNENLRADLCEKNGTICSDQCNEDGCWGAGTDQCLNCKNFNFNGTCI 510
Query: 468 QCAPNSYGYRPLLGCQPCRCD 488
C
Sbjct: 511 ADCGYISNAYKFDNRTCKICH 531
>2ddu_A Reelin; beta-jelly-roll, signaling protein; 2.05A {Mus musculus}
Length = 387
Score = 31.9 bits (71), Expect = 0.48
Identities = 13/101 (12%), Positives = 23/101 (22%), Gaps = 2/101 (1%)
Query: 264 ECDSISGQCQCKENRAGRTCNLALDCPPCDCDPLGTLSVPQPCHPVSGTCYCQPGVTGDR 323
+ + + LD S C +SG C+C G T +
Sbjct: 162 ASSKTRFRWIQESSSQKNVPPFGLDGVYISEPCPSYCSGHGDC--ISGVCFCDLGYTAAQ 219
Query: 324 CDQCDTGYWNFTVNGCTSCNCNRDGSLHFSCDVHTGQCSCK 364
+ + + V TG +
Sbjct: 220 GTCVSNTPNHSEMFDRFEGKLSPLWYKITGGQVGTGCGTLN 260
Score = 29.3 bits (64), Expect = 3.7
Identities = 17/147 (11%), Positives = 34/147 (23%), Gaps = 3/147 (2%)
Query: 322 DRCDQCDTGYWNFTVNGCTSCNCNRDGSLHFSCDVHTGQCSCKPNMTGLACDQCTEGHWG 381
+ Q + + S C S H C +G C C T +
Sbjct: 173 ESSSQKNVPPFGL-DGVYISEPCPSYCSGHGDCI--SGVCFCDLGYTAAQGTCVSNTPNH 229
Query: 382 LQELGCASCECNAVGSVNNSCDQITGQCVCRKGVTGRTCDKCRPDYFGFSVNGCTECASC 441
+ + + + TG G + + + ++
Sbjct: 230 SEMFDRFEGKLSPLWYKITGGQVGTGCGTLNDGRSLYFNGLGKREARTVPLDTRNIRLVQ 289
Query: 442 EQSGMVCSEESGQCVCPPLTRGDLCIQ 468
+ C+ P L +Q
Sbjct: 290 FYIQIGSKTSGITCIKPRARNEGLVVQ 316
>3p5b_L Low density lipoprotein receptor variant; B-propellor, convertase,
hydrolase-lipid binding P complex; 3.30A {Homo sapiens}
PDB: 3p5c_L
Length = 400
Score = 31.0 bits (69), Expect = 1.1
Identities = 21/168 (12%), Positives = 41/168 (24%), Gaps = 10/168 (5%)
Query: 214 PCDASTGECVQ-CRGNTEGARCERCKPLYYGDPRTGDCKPCECNTSGSLGDECDSISGQC 272
C + G C C G C C + + EC + C ++ G
Sbjct: 2 ECLDNNGGCSHVCNDLKIGYEC-LCPDGFQLVAQRRCEDIDECQDPDTCSQLCVNLEGGY 60
Query: 273 QCKENRAGRTCNLALDCPPCDCDPLGTLSVPQPCHPVSGTCYCQPGVTGDR-------CD 325
+C+ + C + ++ + + +
Sbjct: 61 KCQCEEGFQLDPHTKACKAVGSIAYLFFTNRHEVRKMTLDRSEYTSLIPNLRNVVALDTE 120
Query: 326 QCDTGYWNFTVNGCTSCNCNRDGSLHFSCDVHTGQCSCKPNMTGLACD 373
+ ++ C+ D + S T GLA D
Sbjct: 121 VASNRIYWSDLSQRMICSTQLDRAHGVS-SYDTVISRDIQAPDGLAVD 167
>3h99_A Methionyl-tRNA synthetase; rossmann fold, aminoacyl-tRNA
synthetase, ATP-binding, ligas binding,
nucleotide-binding, protein biosynthesis; HET: CIT;
1.40A {Escherichia coli} PDB: 3h97_A* 3h9b_A* 1f4l_A
3h9c_A* 1pfv_A* 1pfu_A 1p7p_A* 1pfw_A* 1pfy_A* 1pg0_A*
1pg2_A* 1qqt_A 1mea_A 1med_A
Length = 560
Score = 31.0 bits (71), Expect = 1.1
Identities = 15/29 (51%), Positives = 17/29 (58%), Gaps = 5/29 (17%)
Query: 175 CASC--EDGYIGDHCESCDAGYYGNPTEL 201
C C D Y GD+CE C A Y +PTEL
Sbjct: 158 CPKCKSPDQY-GDNCEVCGATY--SPTEL 183
>2wg3_C Hedgehog-interacting protein; lipoprotein, development, membrane,
secreted, protease, PALM hydrolase, developmental
protein, autocatalytic cleavage; HET: NAG; 2.60A {Homo
sapiens} PDB: 2wg4_B 2wfx_B 2wft_A 3ho3_A 3ho4_A 3ho5_A
Length = 463
Score = 30.7 bits (69), Expect = 1.3
Identities = 21/90 (23%), Positives = 29/90 (32%), Gaps = 8/90 (8%)
Query: 290 PPCDCDPLGTLSVPQPCHPVSGTCYCQPGVTGDRCDQCDTGYWNFTVNGCTSCNCNRDGS 349
C ++ C + YC P TG C C G+ + C + C
Sbjct: 379 EECRATVQPAQTLTSECSRLCRNGYCTP--TGKCC--CSPGW---EGDFCRTAKCE-PAC 430
Query: 350 LHFSCDVHTGQCSCKPNMTGLACDQCTEGH 379
H V +C CK G C+Q H
Sbjct: 431 RHGGVCVRPNKCLCKKGYLGPQCEQVDHHH 460
Score = 30.3 bits (68), Expect = 2.0
Identities = 12/48 (25%), Positives = 16/48 (33%), Gaps = 1/48 (2%)
Query: 121 PSQPNGSCEPCNCSPYGSVSDECHEESGQCNCRIGITGRDCSQCEPRH 168
P C C P C + +C C+ G G C Q + H
Sbjct: 414 PGWEGDFCRTAKCEPACRHGGVCVRPN-KCLCKKGYLGPQCEQVDHHH 460
Score = 29.2 bits (65), Expect = 3.6
Identities = 15/90 (16%), Positives = 27/90 (30%), Gaps = 8/90 (8%)
Query: 333 NFTVNGCTSCNCNRDGSLHFSCDVHTGQCSCKPNMTGLACDQCTEGHWGLQELGCASCEC 392
+ +L C C P +C G + C + +C
Sbjct: 374 RPLMPEECRATVQPAQTLTSECSRLCRNGYCTP------TGKCC-CSPGWEGDFCRTAKC 426
Query: 393 NAVGSVNNSCDQITGQCVCRKGVTGRTCDK 422
C + +C+C+KG G C++
Sbjct: 427 EPACRHGGVCVR-PNKCLCKKGYLGPQCEQ 455
>3nxp_A Prethrombin-1; allostery, blood coagulation, hydro kringle, serine
protease, zymogen; HET: NAG; 2.20A {Homo sapiens}
Length = 424
Score = 30.6 bits (69), Expect = 1.3
Identities = 16/146 (10%), Positives = 33/146 (22%), Gaps = 20/146 (13%)
Query: 133 CSPYGSVSDECHEESGQCNCRIGITGRDCSQCEPRHILTSRGCASCEDGYIGDHCESCDA 192
C + S + + N + + C R E+G C
Sbjct: 36 CLAWASAQAKALSKHQDFNSAVQLVENFC-----------RNPDGDEEGV------WC-- 76
Query: 193 GYYGNPTELGGSCVPCSCGGGPCDASTGECVQCRGNTEGARCERCKPLYYGDPRTGDCKP 252
Y G C C + + + + + +P T
Sbjct: 77 -YVAGKPGDFGYCDLNYCEEAVEEETGDGLDEDSDRAIEGATATSEYQTFFNPATFGSGE 135
Query: 253 CECNTSGSLGDECDSISGQCQCKENR 278
+C + + + E+
Sbjct: 136 ADCGLRPLFEKKSLEDKTERELLESY 161
>3h5c_B Vitamin K-dependent protein Z; protein Z-protein Z inhibitor
complex, blood coagulation, CL PAIR of basic residues,
disulfide bond, EGF-like domain; HET: NAG BGC; 3.26A
{Homo sapiens}
Length = 317
Score = 30.4 bits (69), Expect = 1.4
Identities = 15/69 (21%), Positives = 22/69 (31%), Gaps = 2/69 (2%)
Query: 312 TCYCQPGVTGDRCDQCDTGYWNFTVNGCTSCNCNRDGSLHFSCDVHTGQCSCKPNMTGLA 371
TC C PG G C + + C G ++C G + + +
Sbjct: 27 TCTCSPGYEGSNC-ELAKNECHPERTDGCQHFC-LPGQESYTCSCAQGYRLGEDHKQCVP 84
Query: 372 CDQCTEGHW 380
DQC G
Sbjct: 85 HDQCACGVL 93
Score = 30.1 bits (68), Expect = 1.8
Identities = 21/101 (20%), Positives = 26/101 (25%), Gaps = 9/101 (8%)
Query: 128 CEPCNCSPYGSVSDECHEESGQCNCRIGITGRDCSQCEPRHILTSRGCAS--CEDGYIGD 185
C C GS D C C G G +C + C G
Sbjct: 8 CISQPCLHNGSCQDSIW--GYTCTCSPGYEGSNCELAKNECHPERTDGCQHFCLPGQESY 65
Query: 186 HCESCDAGY-YGNPTELGGSCVPCSCGGGPC---DASTGEC 222
C SC GY G + C+CG +
Sbjct: 66 TC-SCAQGYRLGEDHKQCVPHDQCACGVLTSEKRAPDLQDL 105
Score = 27.8 bits (62), Expect = 8.6
Identities = 22/89 (24%), Positives = 29/89 (32%), Gaps = 10/89 (11%)
Query: 387 CASCECNAVGSVNNSCDQITGQCVCRKGVTGRTC----DKCRPDYFGFSVNGCTECASCE 442
C S C GS +S T C C G G C ++C P+ + C
Sbjct: 8 CISQPCLHNGSCQDSIWGYT--CTCSPGYEGSNCELAKNECHPERTDGCQHFCLP----G 61
Query: 443 QSGMVCSEESGQCVCPPLTRGDLCIQCAP 471
Q CS G + + QCA
Sbjct: 62 QESYTCSCAQGYRLGEDHKQCVPHDQCAC 90
>1m6b_A C-ER, receptor protein-tyrosine kinase ERBB-3; cell surface
receptor, immunity, signaling transferase; HET: NAG NDG;
2.60A {Homo sapiens} SCOP: c.10.2.5 c.10.2.5 g.3.9.1
g.3.9.1 PDB: 3p11_A*
Length = 621
Score = 30.8 bits (68), Expect = 1.5
Identities = 43/345 (12%), Positives = 69/345 (20%), Gaps = 15/345 (4%)
Query: 147 SGQCNCRIGITGRDCSQCEP--RHILTSRGCASCEDGYIGDHCESCDAGYYGNPTELGGS 204
+ GR C C + G C+ C+ +G
Sbjct: 150 DRDAEIVVKDNGRSCPPCHEVCKGRCWGPGSEDCQTLTKTICAPQCNGHCFGPNP---NQ 206
Query: 205 CVPCSCGGGPCDASTGECVQCRGNTEGARC-ERCKPLYYGDPRTGDCKPCECNTSGSLGD 263
C C GG +C CR + C RC + T +P G
Sbjct: 207 CCHDECAGGCSGPQDTDCFACRHFNDSGACVPRCPQPLVYNKLTFQLEPNPHTKYQYGGV 266
Query: 264 ECDSISGQCQCKENRAGRTCNLALDCPPCDCDPLGTLSVPQPCHPVSGTCYCQPGVTGDR 323
S C +C A + D G C + +
Sbjct: 267 CVAS----CPHNFVVDQTSCVRACPPDKMEVDKNGLKMCEPCGGLCPKACEGTGSGSRFQ 322
Query: 324 CDQCDTGYWNFTVNGCTSCNCNRDGSLHFSCDVHTGQCSCKPNMTGLACDQCTEGHWGLQ 383
L+ + + T
Sbjct: 323 TVDSSNIDGFVNCTKILGNLDFLITGLNGDPWHKIPALDPEKLNVFRTVREITG-----Y 377
Query: 384 ELGCASCECNAVGSVNNSCDQITGQCVCRKGVTGRTCDKCRPDYFGFSVNGCTECASCEQ 443
+ SV ++ I G+ + +G + GF
Sbjct: 378 LNIQSWPPHMHNFSVFSNLTTIGGRSLYNRGFSLLIMKNLNVTSLGFRSLKEISAGRIYI 437
Query: 444 SGMVCSEESGQCVCPPLTRGDLCIQCAPNSYGYRPLLGCQPCRCD 488
S + RG + R + CD
Sbjct: 438 SANRQLCYHHSLNWTKVLRGPTEERLDIKHNRPRRDCVAEGKVCD 482
>2c4f_L Coagulation factor VII precursor; blood coagulation, serine
protease, EGF, EGF-like domain, GLA, receptor enzyme,
glycoprotein, hydrolase, protease; HET: CGU GLC FUC NAG
GIL; 1.72A {Homo sapiens} SCOP: g.3.11.1 g.3.11.1
g.32.1.1 PDB: 1w2k_L* 1w0y_L* 1z6j_L* 2b8o_L* 2aer_L*
2ec9_L* 2fir_L* 2a2q_L* 1fak_L* 1o5d_L* 1wqv_L* 1wss_L*
1wtg_L* 1wun_L* 1wv7_L* 1dan_L* 2aei_L* 2b7d_L* 2f9b_L*
2flb_L* ...
Length = 142
Score = 29.2 bits (66), Expect = 1.6
Identities = 12/65 (18%), Positives = 17/65 (26%), Gaps = 10/65 (15%)
Query: 312 TCYCQPGVTGDRCDQCDTGYWNFTVNGCTSCNCNRDGSLHFSCDVHTG--QCSCKPNMTG 369
C+C P G C+ + C G + D C C +
Sbjct: 69 ICFCLPAFEGRNCET--------HKDDQLICVNENGGCEQYCSDHTGTKRSCRCHEGYSL 120
Query: 370 LACDQ 374
LA
Sbjct: 121 LADGV 125
>1rqg_A Methionyl-tRNA synthetase; translation, dimerization, ligase; 2.90A
{Pyrococcus abyssi} SCOP: a.27.1.1 c.26.1.1 g.41.1.1
Length = 722
Score = 30.4 bits (69), Expect = 1.6
Identities = 11/29 (37%), Positives = 11/29 (37%), Gaps = 5/29 (17%)
Query: 175 CASC--EDGYIGDHCESCDAGYYGNPTEL 201
C C ED GD CE C P L
Sbjct: 143 CPYCGAEDQK-GDQCEVCGRPL--TPEIL 168
>2e26_A Reelin, reeler protein; signaling protein; HET: NAG BMA; 2.00A {Mus
musculus} PDB: 3a7q_A*
Length = 725
Score = 30.0 bits (66), Expect = 2.1
Identities = 25/189 (13%), Positives = 50/189 (26%), Gaps = 14/189 (7%)
Query: 292 CDCDPLGTLSVPQPCHPVSGTCYCQPGVT----GDRCDQCDTGYWNFTVNGCTSCNCNRD 347
D + SV C+ + G++ C + + + +
Sbjct: 434 LQIDFAASCSVTDSCYAIELEYSVDLGLSWHPLVRDCLPTNVECSRYHLQRILVSDTFNK 493
Query: 348 ---GSLHFSCDVHTGQCSCKPNMTGLACDQCTEGHWGLQELGCASCECNAVGSVNNSCDQ 404
+L + + + + W + + C + S + C
Sbjct: 494 WTRITLPLPSYTRSQATRFRWHQP---APFDKQQTWAIDNVYI-GDGCLDMCSGHGRC-- 547
Query: 405 ITGQCVCRKGVTGRTCDKCRPDYFGFSVNGCTECASCEQSGMVCSEESGQCVCPPLTRGD 464
+ G CVC + G CD+ + A Q+ + S VC + G
Sbjct: 548 VQGSCVCDEQWGGLYCDEPETSL-PTQLKDNFNRAPSNQNWLTVSGGKLSTVCGAVASGL 606
Query: 465 LCIQCAPNS 473
S
Sbjct: 607 ALHFSGGCS 615
>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein
interactions, TPR, super-helix,; 2.9A {Homo sapiens}
SCOP: a.118.8.1 d.159.1.3
Length = 477
Score = 30.0 bits (68), Expect = 2.3
Identities = 10/19 (52%), Positives = 13/19 (68%)
Query: 93 DIILIMRVREPGYTGPLCD 111
DI I R R+P +GP+CD
Sbjct: 343 DIRKIERNRQPPDSGPMCD 361
>1fgj_A Hydroxylamine oxidoreductase; nitrification; HET: HEM HEC; 2.80A
{Nitrosomonas europaea} SCOP: a.138.1.3
Length = 546
Score = 29.8 bits (65), Expect = 2.4
Identities = 27/255 (10%), Positives = 53/255 (20%), Gaps = 11/255 (4%)
Query: 143 CHEESGQCNCRIGITGRDCSQCEPRHILTSRGCASCEDGYIGDHCESCDAGYYGNPTELG 202
+ R + + L GC C + ++ PT
Sbjct: 113 PLYYKKGKLEEVENNLRSMGKLGEKETLKEVGCIDCHVD-VNKKDKADHTKDIRMPTA-- 169
Query: 203 GSCVPCSCGGGPCDASTGECVQCRGNTEGARCERCKPLYYGDPRTGDCKPCECNTSGSLG 262
+C C S + + A Y + T
Sbjct: 170 DTCGTCHLREFAERESERDTMVWPNGQWPAGRPSHALDYTANIETTVWATMPQREVAEGC 229
Query: 263 DECDSISGQCQCKENRAGRTCNLALD---CPPCDCDPLGTLSVPQPCHPVSGTCYCQPGV 319
C + +C R + + C C + G
Sbjct: 230 TMCHTNQNKCDNCHTRHEFSAAESRKPEACATCHSGV-DHNNWEAYTMSKHGKLAEMNRD 288
Query: 320 TGDRCDQCDTGYWNFTVNGCTSCNCNRDGSLHFSCDVHT----GQCSCKPNMTGLACDQC 375
+ + + N T C+ + ++ ++ P +
Sbjct: 289 KWNWEVRLKDAFSKGGQNAPTCAACHMEYEGEYTHNITRKTRWANYPFVPGIAENITSDW 348
Query: 376 TEGHWGLQELGCASC 390
+E L C C
Sbjct: 349 SEARLDSWVLTCTQC 363
>1ext_A Tumor necrosis factor receptor; binding protein, cytokine,
signalling protein; 1.85A {Homo sapiens} SCOP: g.24.1.1
g.24.1.1 g.24.1.1 PDB: 1ft4_A* 1ncf_A 1tnr_R
Length = 162
Score = 28.9 bits (64), Expect = 2.7
Identities = 21/142 (14%), Positives = 38/142 (26%), Gaps = 14/142 (9%)
Query: 157 TGRDCSQCEPRHILTSRGCASCEDGYIGDHCESCDAGYYGNPTELGGSCVPCSCGGGPCD 216
C++C L + +D C C++G + C+ CS C
Sbjct: 16 NSICCTKCHKGTYLYNDCPGPGQDT----DCRECESGSFTASENHLRHCLSCS----KCR 67
Query: 217 ASTGECVQCRGNTEGARCERCKPLYYGDPRTGDCKPCECNTS---GSLGDECDSIS-GQC 272
G+ + C+ Y + + C + G++ C C
Sbjct: 68 KEMGQVEISSCTVDRDTVCGCRKNQYRHYWSENLFQCFNCSLCLNGTVHLSCQEKQNTVC 127
Query: 273 QCKEN--RAGRTCNLALDCPPC 292
C C +C
Sbjct: 128 TCHAGFFLRENECVSCSNCKKS 149
>1aui_A Calcineurin, serine/threonine phosphatase 2B; hydrolase,
immunosuppression; 2.10A {Homo sapiens} SCOP: d.159.1.3
Length = 521
Score = 29.8 bits (67), Expect = 3.0
Identities = 9/19 (47%), Positives = 12/19 (63%)
Query: 93 DIILIMRVREPGYTGPLCD 111
DI + R +EP GP+CD
Sbjct: 211 DIRKLDRFKEPPAYGPMCD 229
>3v4v_B Integrin beta-7; cell adhesion, madcam-1, membrane; HET: NAG BMA
MAN 0DU; 3.10A {Homo sapiens} PDB: 3v4p_B*
Length = 503
Score = 29.5 bits (65), Expect = 3.3
Identities = 14/73 (19%), Positives = 19/73 (26%), Gaps = 7/73 (9%)
Query: 263 DECDSISGQCQCKENRAGRTCNLALDCPPCDCDPLGTLSVPQPCHPVSGT-----CYCQP 317
C + + + L CDC+ T C G C C P
Sbjct: 427 THCLPEPHLLRLRALGFSEELIVELH-TLCDCNCSDTQPQAPHCSDGQGHLQCGVCSCAP 485
Query: 318 GVTGDRCDQCDTG 330
G G C +
Sbjct: 486 GRLGRLC-ESRGL 497
Score = 28.7 bits (63), Expect = 5.8
Identities = 14/63 (22%), Positives = 17/63 (26%), Gaps = 22/63 (34%)
Query: 131 CNCSPYGSVSDECHEESGQCNCRIGITGRDCSQCEPRHILTSRGCASCEDGYIGDHCESC 190
CNCS + C + G C G SC G +G CE
Sbjct: 457 CNCSDTQPQAPHCSDGQGHLQC---------------------GVCSCAPGRLGRLCE-S 494
Query: 191 DAG 193
Sbjct: 495 RGL 497
>1zlg_A Anosmin 1; insulin-like growth factor receptor Cys-rich fold, WHEY
acidic protein fold, fibronectin type III fold, hormone-
growth factor complex; NMR {Homo sapiens}
Length = 680
Score = 29.5 bits (65), Expect = 3.5
Identities = 14/114 (12%), Positives = 25/114 (21%), Gaps = 14/114 (12%)
Query: 353 SCDVHTGQCSCKPNMTGLACD-QCTEGHWGLQELGC-------ASCECNAVGSVNNSCDQ 404
+ + ++ C +C + C + C +
Sbjct: 7 AAARRLDESLSAGSVQRARCASRCLSLQITRISAFFQHFQNNGSLVWCQN----HKQCSK 62
Query: 405 ITGQCVCRKGVTGRTCDKCRPDYFGFSVNGCTECASCEQSGMVCSEESGQCVCP 458
C + C F C SCE + + G C P
Sbjct: 63 CLEPCKESGDLRKHQCQSFCEPLFPKKSYEC--LTSCEFLKYILLVKQGDCPAP 114
>3pfq_A PKC-B, PKC-beta, protein kinase C beta type; phosphorylation,
transferase; HET: TPO SEP ANP; 4.00A {Rattus norvegicus}
PDB: 1tbn_A 1tbo_A 2e73_A
Length = 674
Score = 29.2 bits (65), Expect = 3.6
Identities = 18/89 (20%), Positives = 27/89 (30%), Gaps = 14/89 (15%)
Query: 372 CDQCTEGHWGL--QELGCASCECNAVGSVNNSC-DQITGQCVCRKGVTGRTCDKCRPDYF 428
C CT+ WG Q C C V+ C + +T C + + +
Sbjct: 51 CSHCTDFIWGFGKQGFQCQVCSFV----VHKRCHEFVTFSCPGADKGPASDDPRSKHKFK 106
Query: 429 GFSVNGCTECASC-------EQSGMVCSE 450
+ + T C C GM C
Sbjct: 107 IHTYSSPTFCDHCGSLLYGLIHQGMKCDT 135
>2fiy_A Protein FDHE homolog; FDHE protein, structural genomics, P protein
structure initiative, midwest center for structural
genomics, MCSG; 2.10A {Pseudomonas aeruginosa} SCOP:
e.59.1.1
Length = 309
Score = 29.0 bits (64), Expect = 3.8
Identities = 18/87 (20%), Positives = 28/87 (32%), Gaps = 12/87 (13%)
Query: 289 CPPCDCDPLGTLSVPQPCHPVSGTCYCQPGVTGDRCDQCDTGYWNFTVNGCTSCNCNRDG 348
CP C P + + +G Y C C W++ C+ +C
Sbjct: 185 CPACGSPP--MAGMIRQGGKETGLRYLS-------CSLCACE-WHYVRIKCS--HCEESK 232
Query: 349 SLHFSCDVHTGQCSCKPNMTGLACDQC 375
L + H GQ + K + C C
Sbjct: 233 HLAYLSLEHDGQPAEKAVLRAETCPSC 259
>3h63_A Serine/threonine-protein phosphatase 5; metalloenzyme, inhibitors,
drug design, cytoplasm, hydrolase, iron, manganese,
metal-binding, nucleus; HET: NHC; 1.30A {Homo sapiens}
PDB: 3h60_A* 3h61_A* 3h62_C* 3h64_A* 3h66_A 3h67_A*
3h68_A* 3h69_A* 1s95_A
Length = 315
Score = 28.7 bits (65), Expect = 4.4
Identities = 10/19 (52%), Positives = 13/19 (68%)
Query: 93 DIILIMRVREPGYTGPLCD 111
DI I R R+P +GP+CD
Sbjct: 190 DIRKIERNRQPPDSGPMCD 208
>1fx2_A Receptor-type adenylate cyclase gresag 4.1; CAMP, trypanosomes,
adenylyl cyclases, monomer-dimer, catalysis, lyase;
1.46A {Trypanosoma brucei} SCOP: d.58.29.1 PDB: 1fx4_A
Length = 235
Score = 28.7 bits (64), Expect = 4.6
Identities = 13/48 (27%), Positives = 16/48 (33%), Gaps = 8/48 (16%)
Query: 406 TGQCVCRK-GVTGRTCDKCRPDYFGFSVNGCTECASCEQSGMV-CSEE 451
TG C R VT DY+G + N S G V +
Sbjct: 140 TGLCDIRHDEVTKGY------DYYGRTPNMAARTESVANGGQVLMTHA 181
>2ygo_A WIF-1, WNT inhibitory factor 1; signaling protein, WNT signaling
pathway, WNT antagonist, MO cancer, glycosaminoglycan;
HET: MLY PCF NAG; 1.85A {Homo sapiens} PDB: 2ygp_A*
Length = 188
Score = 28.3 bits (62), Expect = 4.7
Identities = 11/65 (16%), Positives = 16/65 (24%), Gaps = 1/65 (1%)
Query: 127 SCEPCNCSPYGSVSDECHEESGQCNCRIGITGRDCS-QCEPRHILTSRGCASCEDGYIGD 185
+ + S + +C C R C DG+ G
Sbjct: 117 AAFEVDVIVMNSEGNTILXTPQNAIFFKTCQQAECPGGCRNGGFCNERRICECPDGFHGP 176
Query: 186 HCESC 190
HCE
Sbjct: 177 HCEGT 181
Score = 27.6 bits (60), Expect = 8.9
Identities = 15/97 (15%), Positives = 25/97 (25%), Gaps = 14/97 (14%)
Query: 341 SCNCNRDGSLHFSCDVHTGQCSCKPNMTGLACDQCT-------------EGHWGLQELGC 387
+ N G++ V C G+A + + C
Sbjct: 87 TVNVPLLGTVPHXASVVQVGFPCLGXQDGVAAFEVDVIVMNSEGNTILXTPQNAIFFKTC 146
Query: 388 ASCECNAVGSVNNSCDQITGQCVCRKGVTGRTCDKCR 424
EC C++ C C G G C+ +
Sbjct: 147 QQAECPGGCRNGGFCNE-RRICECPDGFHGPHCEGTK 182
>3icf_A PPT, serine/threonine-protein phosphatase T; IRO metalloprotein,
structural genomics, PSI-2, protein structu initiative;
2.30A {Saccharomyces cerevisiae}
Length = 335
Score = 28.8 bits (65), Expect = 5.0
Identities = 5/19 (26%), Positives = 7/19 (36%)
Query: 93 DIILIMRVREPGYTGPLCD 111
D I R +P G +
Sbjct: 194 DFKNIDRFAQPPRDGAFME 212
>3ll8_A Serine/threonine-protein phosphatase 2B catalytic alpha isoform;
protein-peptide docking, protein targeting, AKA
beta-augmentation, calmodulin-binding, membrane,
hydrolase; 2.00A {Homo sapiens} PDB: 2p6b_A 1m63_A*
1tco_A* 1mf8_A* 2jog_A
Length = 357
Score = 28.8 bits (65), Expect = 5.1
Identities = 9/19 (47%), Positives = 12/19 (63%)
Query: 93 DIILIMRVREPGYTGPLCD 111
DI + R +EP GP+CD
Sbjct: 198 DIRKLDRFKEPPAYGPMCD 216
>3i8t_A Galectin-4; S-type lectin, carbohydrate binding, molecular
recognition, sugar binding protein; HET: LBT; 2.10A {Mus
musculus} PDB: 2dyc_A
Length = 164
Score = 27.3 bits (60), Expect = 8.5
Identities = 10/52 (19%), Positives = 16/52 (30%), Gaps = 8/52 (15%)
Query: 333 NFTVNGCTSCNCNRDGSLHFSCDVHTGQCSCKPNMTGLACDQCTEGHWGLQE 384
F VN + D + HF+ + + G WG +E
Sbjct: 57 RFHVNFAVGQDDGADVAFHFNPRFDGWDK--------VVFNTMQSGQWGKEE 100
>2y8t_A Apical membrane antigen, putative; membrane protein, moving
junction, invasion; HET: NAG; 1.95A {Toxoplasma gondii}
PDB: 2y8r_A* 2y8s_A* 2x2z_A*
Length = 432
Score = 28.0 bits (61), Expect = 9.4
Identities = 13/75 (17%), Positives = 26/75 (34%), Gaps = 6/75 (8%)
Query: 120 FPSQPNGSCEPCN-CSPYGSVSDECHEESGQCNCRIGITGRDCSQCEPRHILTSRGCASC 178
F N S P + +D+ + G C+ + R + C I ++ +
Sbjct: 358 FIIPSNPSVTPPTPETALQCTADKFPDSFGACDVQACK--RQKTSCVGGQIQSTSVDCTA 415
Query: 179 EDGYIGDHCESCDAG 193
++ + C S A
Sbjct: 416 DE---QNECGSNTAA 427
>3t3p_B Integrin beta-3; integrin, cell adhesion, blood clotting,
fibrinogen, platele; HET: NAG BMA MAN; 2.20A {Homo
sapiens} PDB: 3t3m_B* 3nig_B* 3nif_B* 3nid_B* 2vdr_B*
2vc2_B* 2vdk_B* 2vdm_B* 2vdn_B* 2vdl_B* 2vdp_B* 2vdq_B*
2vdo_B* 3fcu_B* 1txv_B* 1ty3_B* 1ty5_B* 1ty6_B* 1ty7_B*
1tye_B*
Length = 472
Score = 28.0 bits (61), Expect = 9.6
Identities = 20/113 (17%), Positives = 35/113 (30%), Gaps = 18/113 (15%)
Query: 176 ASCEDGYIGDHCESCDAGYYGNPTELGGSCVPCSCGGGPCDASTGECVQCRGNTEGARCE 235
A+C + + +SC G+ C P + ++ G + +
Sbjct: 372 ATCLNNEVIPGLKSCMGLKIGDTVSFSIEAKVRGC---PQEKEKSFTIKPVGFKDSLIVQ 428
Query: 236 -----RCKPLYYGDPRTGDCKPCECNTSGSLGDECDSISGQCQCKENRAGRTC 283
C +P + C N +G+ EC G C+C G C
Sbjct: 429 VTFDCDCACQAQAEPNSHRC----NNGNGTF--EC----GVCRCGPGWLGSQC 471
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.322 0.139 0.488
Gapped
Lambda K H
0.267 0.0564 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 8,510,981
Number of extensions: 554068
Number of successful extensions: 4432
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2113
Number of HSP's successfully gapped: 728
Length of query: 546
Length of database: 6,701,793
Length adjustment: 98
Effective length of query: 448
Effective length of database: 3,965,535
Effective search space: 1776559680
Effective search space used: 1776559680
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 60 (27.3 bits)