RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy14221
(546 letters)
>d1kloa3 g.3.11.2 (A:122-172) Laminin gamma1 chain {Mouse (Mus
musculus) [TaxId: 10090]}
Length = 51
Score = 47.2 bits (112), Expect = 5e-08
Identities = 20/44 (45%), Positives = 26/44 (59%)
Query: 292 CDCDPLGTLSVPQPCHPVSGTCYCQPGVTGDRCDQCDTGYWNFT 335
C C+P GT+ C+PV+G C C P V+G C CD GY+N
Sbjct: 1 CACNPYGTVQQQSSCNPVTGQCQCLPHVSGRDCGTCDPGYYNLQ 44
Score = 44.5 bits (105), Expect = 5e-07
Identities = 18/44 (40%), Positives = 23/44 (52%), Gaps = 2/44 (4%)
Query: 390 CECNAVGSVNNS--CDQITGQCVCRKGVTGRTCDKCRPDYFGFS 431
C CN G+V C+ +TGQC C V+GR C C P Y+
Sbjct: 1 CACNPYGTVQQQSSCNPVTGQCQCLPHVSGRDCGTCDPGYYNLQ 44
Score = 43.7 bits (103), Expect = 9e-07
Identities = 17/45 (37%), Positives = 25/45 (55%), Gaps = 2/45 (4%)
Query: 342 CNCNRDGSLHFS--CDVHTGQCSCKPNMTGLACDQCTEGHWGLQE 384
C CN G++ C+ TGQC C P+++G C C G++ LQ
Sbjct: 1 CACNPYGTVQQQSSCNPVTGQCQCLPHVSGRDCGTCDPGYYNLQS 45
Score = 35.6 bits (82), Expect = 6e-04
Identities = 17/40 (42%), Positives = 25/40 (62%), Gaps = 2/40 (5%)
Query: 131 CNCSPYGSVSD--ECHEESGQCNCRIGITGRDCSQCEPRH 168
C C+PYG+V C+ +GQC C ++GRDC C+P +
Sbjct: 1 CACNPYGTVQQQSSCNPVTGQCQCLPHVSGRDCGTCDPGY 40
Score = 33.3 bits (76), Expect = 0.004
Identities = 13/37 (35%), Positives = 17/37 (45%)
Query: 447 VCSEESGQCVCPPLTRGDLCIQCAPNSYGYRPLLGCQ 483
C+ +GQC C P G C C P Y + GC+
Sbjct: 14 SCNPVTGQCQCLPHVSGRDCGTCDPGYYNLQSGQGCE 50
Score = 31.8 bits (72), Expect = 0.015
Identities = 13/41 (31%), Positives = 17/41 (41%), Gaps = 1/41 (2%)
Query: 211 GGGPCDASTGECVQCRGNTEGARCERCKPLYYGDPRTGDCK 251
C+ TG+C QC + G C C P YY C+
Sbjct: 11 QQSSCNPVTGQC-QCLPHVSGRDCGTCDPGYYNLQSGQGCE 50
Score = 31.4 bits (71), Expect = 0.021
Identities = 13/34 (38%), Positives = 20/34 (58%), Gaps = 2/34 (5%)
Query: 253 CECNTSGSLGD--ECDSISGQCQCKENRAGRTCN 284
C CN G++ C+ ++GQCQC + +GR C
Sbjct: 1 CACNPYGTVQQQSSCNPVTGQCQCLPHVSGRDCG 34
Score = 24.5 bits (53), Expect = 5.7
Identities = 7/20 (35%), Positives = 9/20 (45%)
Query: 103 PGYTGPLCDRCAYGYFGFPS 122
P +G C C GY+ S
Sbjct: 26 PHVSGRDCGTCDPGYYNLQS 45
>d1kloa2 g.3.11.2 (A:66-121) Laminin gamma1 chain {Mouse (Mus
musculus) [TaxId: 10090]}
Length = 56
Score = 43.7 bits (103), Expect = 8e-07
Identities = 17/46 (36%), Positives = 26/46 (56%), Gaps = 1/46 (2%)
Query: 210 CGGGPCDASTGECVQCRGNTEGARCERCKPLYYGDPRTGD-CKPCE 254
G C+ TGEC++C NT G C+RCK ++G+P + C+
Sbjct: 10 NAVGNCNRLTGECLKCIYNTAGFYCDRCKEGFFGNPLAPNPADKCK 55
Score = 38.4 bits (89), Expect = 8e-05
Identities = 19/53 (35%), Positives = 26/53 (49%), Gaps = 3/53 (5%)
Query: 342 CNCNRDGSLHFSCDVHTGQC-SCKPNMTGLACDQCTEGHWG--LQELGCASCE 391
CN N D + +C+ TG+C C N G CD+C EG +G L C+
Sbjct: 3 CNDNIDPNAVGNCNRLTGECLKCIYNTAGFYCDRCKEGFFGNPLAPNPADKCK 55
Score = 38.0 bits (88), Expect = 1e-04
Identities = 14/54 (25%), Positives = 26/54 (48%), Gaps = 2/54 (3%)
Query: 390 CECNAVGSVNNSCDQITGQCV-CRKGVTGRTCDKCRPDYFGFSVNGCTECASCE 442
C N + +C+++TG+C+ C G CD+C+ +FG + C+
Sbjct: 3 CNDNIDPNAVGNCNRLTGECLKCIYNTAGFYCDRCKEGFFGNPLAP-NPADKCK 55
Score = 38.0 bits (88), Expect = 1e-04
Identities = 12/54 (22%), Positives = 21/54 (38%), Gaps = 3/54 (5%)
Query: 292 CDCDPLGTLSVPQPCHPVSGTCY-CQPGVTGDRCDQCDTGYWNFTVN--GCTSC 342
C C+ + C+ ++G C C G CD+C G++ + C
Sbjct: 1 CQCNDNIDPNAVGNCNRLTGECLKCIYNTAGFYCDRCKEGFFGNPLAPNPADKC 54
Score = 31.8 bits (72), Expect = 0.016
Identities = 14/59 (23%), Positives = 19/59 (32%), Gaps = 5/59 (8%)
Query: 150 CNCRIGITGRDCSQCEPRHILTSRGCASCEDGYIGDHCESCDAGYYGNPTELGGSCVPC 208
C C I C + C C G +C+ C G++GNP C
Sbjct: 1 CQCNDNIDPNAVGNCNRL----TGECLKCIYNTAGFYCDRCKEGFFGNPLA-PNPADKC 54
Score = 26.4 bits (58), Expect = 1.4
Identities = 12/29 (41%), Positives = 14/29 (48%), Gaps = 1/29 (3%)
Query: 103 PGYTGPLCDRCAYGYFGFPSQPNGSCEPC 131
G CDRC G+FG P PN + C
Sbjct: 27 YNTAGFYCDRCKEGFFGNPLAPNP-ADKC 54
Score = 26.0 bits (57), Expect = 1.7
Identities = 10/33 (30%), Positives = 17/33 (51%), Gaps = 1/33 (3%)
Query: 253 CECNTSGSLGDECDSISGQC-QCKENRAGRTCN 284
C N + C+ ++G+C +C N AG C+
Sbjct: 3 CNDNIDPNAVGNCNRLTGECLKCIYNTAGFYCD 35
Score = 24.5 bits (53), Expect = 6.7
Identities = 10/41 (24%), Positives = 17/41 (41%), Gaps = 2/41 (4%)
Query: 448 CSEESGQCV-CPPLTRGDLCIQCAPNSYGY-RPLLGCQPCR 486
C+ +G+C+ C T G C +C +G C+
Sbjct: 15 CNRLTGECLKCIYNTAGFYCDRCKEGFFGNPLAPNPADKCK 55
>d1kloa1 g.3.11.2 (A:11-65) Laminin gamma1 chain {Mouse (Mus
musculus) [TaxId: 10090]}
Length = 55
Score = 37.6 bits (87), Expect = 1e-04
Identities = 14/34 (41%), Positives = 16/34 (47%)
Query: 175 CASCEDGYIGDHCESCDAGYYGNPTELGGSCVPC 208
C C G G CE CD GY+G+P G C
Sbjct: 20 CTHCPTGTAGKRCELCDDGYFGDPLGSNGPVRLC 53
Score = 34.5 bits (79), Expect = 0.002
Identities = 14/42 (33%), Positives = 16/42 (38%), Gaps = 2/42 (4%)
Query: 215 CDASTGECVQCRGNTEGARCERCKPLYYGDPRT--GDCKPCE 254
C C T G RCE C Y+GDP G + C
Sbjct: 13 PKTKEVVCTHCPTGTAGKRCELCDDGYFGDPLGSNGPVRLCR 54
Score = 31.4 bits (71), Expect = 0.026
Identities = 12/29 (41%), Positives = 13/29 (44%)
Query: 103 PGYTGPLCDRCAYGYFGFPSQPNGSCEPC 131
G G C+ C GYFG P NG C
Sbjct: 25 TGTAGKRCELCDDGYFGDPLGSNGPVRLC 53
Score = 26.8 bits (59), Expect = 0.96
Identities = 13/54 (24%), Positives = 16/54 (29%), Gaps = 1/54 (1%)
Query: 390 CECNAVGSVNNSCDQITGQCV-CRKGVTGRTCDKCRPDYFGFSVNGCTECASCE 442
C C S C C G G+ C+ C YFG + C
Sbjct: 1 CPCPGGSSCAIVPKTKEVVCTHCPTGTAGKRCELCDDGYFGDPLGSNGPVRLCR 54
>d2cvca1 a.138.1.1 (A:40-544) 16-heme cytochrome c HmcA
{Desulfovibrio vulgaris [TaxId: 881]}
Length = 505
Score = 32.8 bits (72), Expect = 0.100
Identities = 33/344 (9%), Positives = 67/344 (19%), Gaps = 15/344 (4%)
Query: 113 CAYGYFGFPSQPNGSCEPCNCSPYGSVSDECHEESGQCNCRIGITGRDCSQCEPRHILTS 172
+ + +C C+ + ++ C+ + PR
Sbjct: 171 PVDKRPALDTAAHTACISCHMDVAKTKAETGPVNCAGCHAPEAQAKFKVVREVPRLDRGQ 230
Query: 173 RGCASCEDGYIGDHCESCDAGYYGNPTELGGSCVPCSCGGGPCDASTGECVQCRGNTEGA 232
A D + + C C A
Sbjct: 231 PDAALILPVPGKDAPREMKGTMKPVAFDHKAHEAKANDCRTCHHVRIDTCTACHTVNGTA 290
Query: 233 RCERCKPLYYGDPRTGDCKPCECNTSGSLGDECDSISGQCQCKENRAGRTCNLALDCPPC 292
+ + C+ + C G + C C
Sbjct: 291 DSKFVQLEKAMHQPDSMRSCVGCHNTRVQQPTCAGCHGFI--------KPTKSDAQCGVC 342
Query: 293 DCDPLGTLSVP-QPCHPVSGTCYCQPGVTGDRCDQCDTGYWNFTVNGCTSCNCNRDGSLH 351
G + + ++ + V F +N +
Sbjct: 343 HVAAPGFDAKQVEAGALLNLKAEQRSQVAASMLSARPQPKGTFDLNDIPEKVVIGSIAKE 402
Query: 352 FSCDVHTGQCSCKPNMTGLACDQCTEGHWGLQELGCASCECNAVGSVNNSCDQITGQCVC 411
+ + K + G+ D+ + C C N+ S+ +C
Sbjct: 403 YQPSEFPHRKIVKTLIAGIGEDKLAATFHIEKGTLCQGCHHNSPASLT------PPKCAS 456
Query: 412 RKGVTGRTCDKCRPDYFGFSVNGCTECASCEQSGMVCSEESGQC 455
G RP C C + + C
Sbjct: 457 CHGKPFDADRGDRPGLKAAYHQQCMGCHDRMKIEKPANTACVDC 500
Score = 28.6 bits (61), Expect = 2.3
Identities = 30/334 (8%), Positives = 51/334 (15%), Gaps = 1/334 (0%)
Query: 117 YFGFPSQPNGSCEPCNCSPYGSVSDECHEESGQCNCRIGITGRDCSQCEPRHILTSRGCA 176
+ S CH + + ++ C H
Sbjct: 116 DKSLHYRHVASKAIKPVGDPQKNCGACHHVYDEASKKLVWGKNKEDSCRACHGEKPVDKR 175
Query: 177 SCEDGYIGDHCESCDAGYYGNPTE-LGGSCVPCSCGGGPCDASTGECVQCRGNTEGARCE 235
D C SC E +C C V +
Sbjct: 176 PALDTAAHTACISCHMDVAKTKAETGPVNCAGCHAPEAQAKFKVVREVPRLDRGQPDAAL 235
Query: 236 RCKPLYYGDPRTGDCKPCECNTSGSLGDECDSISGQCQCKENRAGRTCNLALDCPPCDCD 295
PR + + C C+
Sbjct: 236 ILPVPGKDAPREMKGTMKPVAFDHKAHEAKANDCRTCHHVRIDTCTACHTVNGTADSKFV 295
Query: 296 PLGTLSVPQPCHPVSGTCYCQPGVTGDRCDQCDTGYWNFTVNGCTSCNCNRDGSLHFSCD 355
L C+ + C C+ G +
Sbjct: 296 QLEKAMHQPDSMRSCVGCHNTRVQQPTCAGCHGFIKPTKSDAQCGVCHVAAPGFDAKQVE 355
Query: 356 VHTGQCSCKPNMTGLACDQCTEGHWGLQELGCASCECNAVGSVNNSCDQITGQCVCRKGV 415
+ +A + V Q + +
Sbjct: 356 AGALLNLKAEQRSQVAASMLSARPQPKGTFDLNDIPEKVVIGSIAKEYQPSEFPHRKIVK 415
Query: 416 TGRTCDKCRPDYFGFSVNGCTECASCEQSGMVCS 449
T F + T C C +
Sbjct: 416 TLIAGIGEDKLAATFHIEKGTLCQGCHHNSPASL 449
Score = 27.0 bits (57), Expect = 6.3
Identities = 32/364 (8%), Positives = 62/364 (17%), Gaps = 21/364 (5%)
Query: 143 CHEESGQCNCRIGITGRDCSQCEPRHILTSRGCASCEDGYI-----------------GD 185
CH + + + G +C C +
Sbjct: 78 CHTDLAKAGKKTGPQDGECRSCHNPKPSAASSWKEIGFDKSLHYRHVASKAIKPVGDPQK 137
Query: 186 HCESCDAGYYGNPTELGGSCVPCSCGGGPCDASTGECVQCRGNTEGARCERCKPLYYGDP 245
+C +C Y +L + C C
Sbjct: 138 NCGACHHVYDEASKKLVWGKNKEDSCRACHGEKPVDKRPALDTAAHTACISCHMDVAKTK 197
Query: 246 RTGDCKPCECNTSGSLGDECDSISGQCQCKENRAGRTCNLALDCPPCDCDPLGTLSVPQP 305
C + + + + + L + + GT+
Sbjct: 198 AETGPVNCAGCHAPEAQAKFKVVREVPRLDRGQPDAALILPVPGKDAPREMKGTMKPVAF 257
Query: 306 CHPV----SGTCYCQPGVTGDRCDQCDTGYWNFTVNGCTSCNCNRDGSLHFSCDVHTGQC 361
H + C V D C C T SC
Sbjct: 258 DHKAHEAKANDCRTCHHVRIDTCTACHTVNGTADSKFVQLEKAMHQPDSMRSCVGCHNTR 317
Query: 362 SCKPNMTGLACDQCTEGHWGLQELGCASCECNAVGSVNNSCDQITGQCVCRKGVTGRTCD 421
+P G + + V +
Sbjct: 318 VQQPTCAGCHGFIKPTKSDAQCGVCHVAAPGFDAKQVEAGALLNLKAEQRSQVAASMLSA 377
Query: 422 KCRPDYFGFSVNGCTECASCEQSGMVCSEESGQCVCPPLTRGDLCIQCAPNSYGYRPLLG 481
+ +P + + + E + ++
Sbjct: 378 RPQPKGTFDLNDIPEKVVIGSIAKEYQPSEFPHRKIVKTLIAGIGEDKLAATFHIEKGTL 437
Query: 482 CQPC 485
CQ C
Sbjct: 438 CQGC 441
>d2fiya1 e.59.1.1 (A:19-308) FdhE homolog PA4809 {Pseudomonas
aeruginosa [TaxId: 287]}
Length = 290
Score = 31.4 bits (71), Expect = 0.21
Identities = 17/87 (19%), Positives = 28/87 (32%), Gaps = 12/87 (13%)
Query: 289 CPPCDCDPLGTLSVPQPCHPVSGTCYCQPGVTGDRCDQCDTGYWNFTVNGCTSCNCNRDG 348
CP C P + + +G Y C C W++ C+ C ++
Sbjct: 167 CPACGSPP--MAGMIRQGGKETGLRYL-------SCSLCACE-WHYVRIKCSHCEESKHL 216
Query: 349 SLHFSCDVHTGQCSCKPNMTGLACDQC 375
+ H GQ + K + C C
Sbjct: 217 AYLSL--EHDGQPAEKAVLRAETCPSC 241
>d1ofda3 d.153.1.1 (A:1-430) Alpha subunit of glutamate synthase,
N-terminal domain {Synechocystis sp. [TaxId: 1143]}
Length = 430
Score = 28.5 bits (63), Expect = 2.3
Identities = 16/110 (14%), Positives = 30/110 (27%), Gaps = 10/110 (9%)
Query: 82 GDTSGIPTQVPDIILIMRVREPGYTGPLCDRCAYGYFGFPSQPNGSCEPCNCSPYGSVSD 141
GD +G+ T +P +L P DR G P +P+
Sbjct: 41 GDGAGVMTAIPRELLAQWFNTRNLPMPDGDRLGVGMVFLPQEPSAREVARAY-------- 92
Query: 142 ECHEESGQCNCRIGITGRDCSQCEPRHILTSRGCASCEDGYIGDHCESCD 191
E + + R+ + ++ + + E C
Sbjct: 93 -VEEVVRLEKLTV-LGWREVPVNSDVLGIQAKNNQPHIEQILVTCPEGCA 140
>d1ofwa_ a.138.1.1 (A:) Nine-heme cytochrome c {Desulfovibrio
desulfuricans, ATCC 27774 [TaxId: 876]}
Length = 293
Score = 28.0 bits (60), Expect = 2.9
Identities = 25/227 (11%), Positives = 40/227 (17%), Gaps = 9/227 (3%)
Query: 125 NGSCEPCNCSPYGSVSDECHEESGQCNCRIGITGRDCSQCEP---RHILTSRGCASCEDG 181
+CE C+ + CH G+ R T C SC +
Sbjct: 44 IDNCETCHHTGDPVSCSTCHTVEGKAEGNYITLDRAMHATNIAKRAKGNTPVSCVSCHEQ 103
Query: 182 YIGDHCESCDAGYYGNPTELGGSCVPCSCGGGPCDASTGECVQCRGNTEG------ARCE 235
+ E P C C + G A
Sbjct: 104 QTKERRECAGCHAIVTPKRDEAWCATCHNITPSMTPEQMQKGINGTLLPGDNEALAAETV 163
Query: 236 RCKPLYYGDPRTGDCKPCECNTSGSLGDECDSISGQCQCKENRAGRTCNLALDCPPCDCD 295
+ + + + + + LA
Sbjct: 164 LAQKTVEPVSPMLAPYKVVIDALADKYEPSNFTHRRHLTSLMERIKDDKLAQAFHNKPEI 223
Query: 296 PLGTLSVPQPCHPVSGTCYCQPGVTGDRCDQCDTGYWNFTVNGCTSC 342
T P C D+ + C C
Sbjct: 224 LCATCHHRSPLSLTPPKCGSCHTKEIDKANPGRPNLMAAYHLQCMGC 270
Score = 28.0 bits (60), Expect = 3.0
Identities = 24/196 (12%), Positives = 35/196 (17%), Gaps = 3/196 (1%)
Query: 293 DCDPLGTLSVPQPCHPVSGTCYCQPGVTGDRCDQCDTGYWNFTVN--GCTSCNCNRDGSL 350
C G CH V G + C SC+ +
Sbjct: 49 TCHHTGDPVSCSTCHTVEGKAEGNYITLDRAMHATNIAKRAKGNTPVSCVSCHEQQTKER 108
Query: 351 HFSCDVHTGQCSCKPNMTGLACDQCTEGHWGLQELGCASCECNAVGSVNNSCDQITGQCV 410
H + C T Q + + + + + Q
Sbjct: 109 RECAGCHAIVTPKRDEAWCATCHNITPSMTPEQMQKGINGTLLPGDNEALAAETVLAQKT 168
Query: 411 CRKGVTGRTCDKCRPDYFGFSVNGCT-ECASCEQSGMVCSEESGQCVCPPLTRGDLCIQC 469
K D S M ++ LC C
Sbjct: 169 VEPVSPMLAPYKVVIDALADKYEPSNFTHRRHLTSLMERIKDDKLAQAFHNKPEILCATC 228
Query: 470 APNSYGYRPLLGCQPC 485
S C C
Sbjct: 229 HHRSPLSLTPPKCGSC 244
Score = 27.6 bits (59), Expect = 3.9
Identities = 19/206 (9%), Positives = 33/206 (16%), Gaps = 13/206 (6%)
Query: 175 CASCEDGYIGDHCESCDAGYYGNPTELGGSCVPCSCGGGPCDASTGECVQCRGNTEGAR- 233
C +C C +C A V C E
Sbjct: 47 CETCHHTGDPVSCSTCHTVEGKAEGNYITLDRAMHATNIAKRAKGNTPVSCVSCHEQQTK 106
Query: 234 ----CERCKPLYYGDPRTGDCKPCECNTSGSLGDECDSISGQCQCKENRAGRTCNLALDC 289
C C + C C T ++ + L
Sbjct: 107 ERRECAGCHAIVTPKRDEAWCATCHNITPSMTPEQMQKGINGTLLPGDNEALAAETVLAQ 166
Query: 290 PPCDCDPLGTLSVPQPCHPVSGTCYCQPGVTGDRCDQCDTGYWNFTVNGCTSCNCNRDGS 349
+ P + + + + +
Sbjct: 167 KTVEPV--------SPMLAPYKVVIDALADKYEPSNFTHRRHLTSLMERIKDDKLAQAFH 218
Query: 350 LHFSCDVHTGQCSCKPNMTGLACDQC 375
T ++T C C
Sbjct: 219 NKPEILCATCHHRSPLSLTPPKCGSC 244
>d3egfa_ g.3.11.1 (A:) Epidermal growth factor, EGF {Mouse (Mus
musculus) [TaxId: 10090]}
Length = 53
Score = 24.8 bits (54), Expect = 4.9
Identities = 13/48 (27%), Positives = 16/48 (33%), Gaps = 1/48 (2%)
Query: 288 DCPPCDCDPLGTLSVPQPCHPVSG-TCYCQPGVTGDRCDQCDTGYWNF 334
CP V + TC C G +GDRC D +W
Sbjct: 5 GCPSSYDGYCLNGGVCMHIESLDSYTCNCVIGYSGDRCQTRDLRWWEL 52
>d2gala_ b.29.1.3 (A:) Galectin-7 {Human (Homo sapiens) [TaxId:
9606]}
Length = 133
Score = 26.0 bits (57), Expect = 7.8
Identities = 12/52 (23%), Positives = 20/52 (38%), Gaps = 9/52 (17%)
Query: 333 NFTVNGCTSCNCNRDGSLHFSCDVHTGQCSCKPNMTGLACDQCTEGHWGLQE 384
F VN D +LHF+ + T + + + +G WG +E
Sbjct: 29 RFHVNLLCGEEQGSDAALHFNPRLDTSE---------VVFNSKEQGSWGREE 71
>d1ea0a3 d.153.1.1 (A:1-422) Alpha subunit of glutamate synthase,
N-terminal domain {Azospirillum brasilense [TaxId: 192]}
Length = 422
Score = 26.5 bits (58), Expect = 9.1
Identities = 21/102 (20%), Positives = 31/102 (30%), Gaps = 3/102 (2%)
Query: 82 GDTSGIPTQVPDIILIMRVREPGYTGPLCDRCAYGYFGFPSQPNGSCEPCNCSPYGSVSD 141
GD +GI VP V+ G+ P ++ A G P + E C C +
Sbjct: 41 GDGAGIHVAVPQKFFKDHVKVIGHRAPD-NKLAVGQVFLPRISLDAQEACRCIVETEILA 99
Query: 142 ECHEESG--QCNCRIGITGRDCSQCEPRHILTSRGCASCEDG 181
+ G Q + I G + P G
Sbjct: 100 FGYYIYGWRQVPINVDIIGEKANATRPEIEQIIVGNNKGVSD 141
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.322 0.139 0.488
Gapped
Lambda K H
0.267 0.0399 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 2,227,529
Number of extensions: 125895
Number of successful extensions: 1065
Number of sequences better than 10.0: 1
Number of HSP's gapped: 732
Number of HSP's successfully gapped: 263
Length of query: 546
Length of database: 2,407,596
Length adjustment: 90
Effective length of query: 456
Effective length of database: 1,171,896
Effective search space: 534384576
Effective search space used: 534384576
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 55 (25.8 bits)