Query psy14223
Match_columns 173
No_of_seqs 28 out of 30
Neff 3.1
Searched_HMMs 46136
Date Fri Aug 16 22:33:26 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy14223.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/14223hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF02389 Cornifin: Cornifin (S 96.6 0.24 5.3E-06 39.2 14.9 116 53-168 66-181 (199)
2 smart00115 CASc Caspase, inter 12.8 70 0.0015 26.8 0.1 9 1-9 123-131 (241)
3 cd00032 CASc Caspase, interleu 10.9 87 0.0019 26.0 0.1 10 1-10 124-133 (243)
4 KOG3573|consensus 7.8 1.4E+02 0.0031 25.7 0.2 8 1-8 186-193 (300)
5 PF01736 Polyoma_agno: Polyoma 3.8 3.4E+02 0.0073 19.6 0.0 16 2-17 38-53 (62)
6 KOG2330|consensus 2.7 9.7E+02 0.021 23.6 1.9 9 91-99 307-315 (500)
7 PHA02621 agnoprotein; Provisio 2.7 5.1E+02 0.011 19.0 0.0 16 2-17 38-53 (68)
8 COG3085 Uncharacterized protei 1.6 1E+03 0.022 19.0 0.1 6 4-9 64-69 (112)
9 PF14813 NADH_B2: NADH dehydro 1.3 1.7E+03 0.037 16.3 0.9 10 157-166 62-71 (71)
10 cd03724 SOCS_ASB5 SOCS (suppre 1.3 7.4E+02 0.016 16.2 -1.1 5 1-5 7-11 (42)
No 1
>PF02389 Cornifin: Cornifin (SPRR) family; InterPro: IPR003302 This entry represents Cornifin (also known as SPR), which encodes a novel class of polypeptides (small proline rich proteins) that are strongly induced during differentiation of human epidermal keratinocytes in vitro and in vivo. The most characteristic feature of the SPRR gene family resides in the structure of the central segments of the encoded polypeptides that are built up from tandemly repeated units of either eight (SPRR1 and SPRR3) or nine (SPRR2) amino acids with the general consensus XKXPEPXX where X is any amino acid []. Cornifin is a keratinocyte protein that first appears in the cell cytosol, but ultimately becomes cross-linked to membrane proteins by transglutaminase. All that results in the formation of an insoluble envelope beneath the plasma membrane. It may participate widely in the construction of cell envelopes in cornifying epithelia characterised by either increased thickness or a requirement for extreme flexibility. ; GO: 0018149 peptide cross-linking, 0005737 cytoplasm
Probab=96.57 E-value=0.24 Score=39.16 Aligned_cols=116 Identities=11% Similarity=-0.054 Sum_probs=49.3
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q psy14223 53 EERGPGDKEKRGPGDKEERGPGDKEKRGPGDKEERGPGDKEERGPGDREKRGPGDKEERGPGDKEKRGPGDKEKRGPGDK 132 (173)
Q Consensus 53 e~r~PG~~~~ripgsqe~R~pgsq~~R~pgs~~~RiPgs~~~RiPgs~e~RipGsqd~R~PG~qd~Ripgs~n~Ripgsq 132 (173)
...++......+|+.....+|+.....+|+.....+|.....++|+.....+|+.....+|+.....+|..-...++..-
T Consensus 66 ~t~Vp~~~~t~vP~~~~t~Vpe~~~t~VP~~~~t~VP~~~~t~VP~~~~t~Vp~p~~~~VP~~~~~~VP~~~~~~vP~~~ 145 (199)
T PF02389_consen 66 YTEVPEPCYTSVPEPCYTKVPEPCYTKVPEPCYTKVPEPGYTKVPEPCTTSVPEPCYTSVPEPCYTKVPEPGCTSVPEPG 145 (199)
T ss_pred ccccccccccccCCCccCcccCCCcCcCCCCccCCCCCCCcCCCCCCccCccCCCCCCcCCCCcCCCCCCCCcccCCCCc
Confidence 33333344444444444444444444444444444444444444444444444444444444444444444444444433
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCccccC
Q psy14223 133 EERGPGDKEERGPGDKEERGQGDKEKRGPGDKEERA 168 (173)
Q Consensus 133 e~RiPg~qe~RiPg~qn~ri~~~q~~rip~~k~~~~ 168 (173)
...++...--.+|.....++++.....+|...-..+
T Consensus 146 ~~~vp~p~~~~vP~~~~~~vP~~~~~~vP~p~~~~v 181 (199)
T PF02389_consen 146 YTEVPEPCYTKVPEPGYTSVPEPCYTEVPEPCYTKV 181 (199)
T ss_pred cccccCCccccCCCCcccccCCccccCCCCCCcccC
Confidence 344444444444444444444444444444444333
No 2
>smart00115 CASc Caspase, interleukin-1 beta converting enzyme (ICE) homologues. Cysteine aspartases that mediate programmed cell death (apoptosis). Caspases are synthesised as zymogens and activated by proteolysis of the peptide backbone adjacent to an aspartate. The resulting two subunits associate to form an (alpha)2(beta)2-tetramer which is the active enzyme. Activation of caspases can be mediated by other caspase homologues.
Probab=12.81 E-value=70 Score=26.76 Aligned_cols=9 Identities=56% Similarity=1.195 Sum_probs=7.1
Q ss_pred Ccccccccc
Q psy14223 1 MQACRGERA 9 (173)
Q Consensus 1 ~~~~~~~~~ 9 (173)
+|||||...
T Consensus 123 iqACRg~~~ 131 (241)
T smart00115 123 IQACRGDEL 131 (241)
T ss_pred EeCCCCCCC
Confidence 599999754
No 3
>cd00032 CASc Caspase, interleukin-1 beta converting enzyme (ICE) homologues; Cysteine-dependent aspartate-directed proteases that mediate programmed cell death (apoptosis). Caspases are synthesized as inactive zymogens and activated by proteolysis of the peptide backbone adjacent to an aspartate. The resulting two subunits associate to form an (alpha)2(beta)2-tetramer which is the active enzyme. Activation of caspases can be mediated by other caspase homologs.
Probab=10.95 E-value=87 Score=26.04 Aligned_cols=10 Identities=50% Similarity=1.092 Sum_probs=7.8
Q ss_pred Cccccccccc
Q psy14223 1 MQACRGERAS 10 (173)
Q Consensus 1 ~~~~~~~~~s 10 (173)
+|||||....
T Consensus 124 iqACRg~~~~ 133 (243)
T cd00032 124 IQACRGDELD 133 (243)
T ss_pred EECCCCCcCC
Confidence 5999998654
No 4
>KOG3573|consensus
Probab=7.81 E-value=1.4e+02 Score=25.70 Aligned_cols=8 Identities=63% Similarity=1.439 Sum_probs=6.4
Q ss_pred Cccccccc
Q psy14223 1 MQACRGER 8 (173)
Q Consensus 1 ~~~~~~~~ 8 (173)
+|||||.+
T Consensus 186 iqac~g~~ 193 (300)
T KOG3573|consen 186 IQACRGDQ 193 (300)
T ss_pred ehhccCCC
Confidence 58999975
No 5
>PF01736 Polyoma_agno: Polyomavirus agnoprotein; InterPro: IPR002643 This family consists of the DNA-binding protein or agnoprotein from various polyomaviruses. This protein is highly basic and can bind single stranded and double stranded DNA []. Mutations in the agnoprotein produce smaller viral plaques, hence its function is not essential for growth in tissue culture cells but something has slowed in the normal replication cycle []. There is also evidence suggesting that the agnogene and agnoprotein act as regulators of structural protein synthesis [].; GO: 0003677 DNA binding
Probab=3.80 E-value=3.4e+02 Score=19.64 Aligned_cols=16 Identities=31% Similarity=0.688 Sum_probs=11.8
Q ss_pred ccccccccccccccCC
Q psy14223 2 QACRGERASDKEERGP 17 (173)
Q Consensus 2 ~~~~~~~~s~~~~~~p 17 (173)
+.||||..-|-+.+++
T Consensus 38 ~FC~GedsvdGK~k~~ 53 (62)
T PF01736_consen 38 EFCRGEDSVDGKNKKT 53 (62)
T ss_pred HHhcCCccccccccCc
Confidence 5799998877665554
No 6
>KOG2330|consensus
Probab=2.75 E-value=9.7e+02 Score=23.58 Aligned_cols=9 Identities=22% Similarity=0.183 Sum_probs=3.6
Q ss_pred CCCCCCCCC
Q psy14223 91 DKEERGPGD 99 (173)
Q Consensus 91 s~~~RiPgs 99 (173)
.++++|||-
T Consensus 307 YPdlkIpGL 315 (500)
T KOG2330|consen 307 YPDLKIPGL 315 (500)
T ss_pred CCcccCCCC
Confidence 334444443
No 7
>PHA02621 agnoprotein; Provisional
Probab=2.71 E-value=5.1e+02 Score=18.99 Aligned_cols=16 Identities=31% Similarity=0.661 Sum_probs=11.5
Q ss_pred ccccccccccccccCC
Q psy14223 2 QACRGERASDKEERGP 17 (173)
Q Consensus 2 ~~~~~~~~s~~~~~~p 17 (173)
+.|+||..-|-+.+++
T Consensus 38 ~fc~gedsvdgk~k~~ 53 (68)
T PHA02621 38 DFCRGEDSVDGKKKKD 53 (68)
T ss_pred HHhcCcccccccccCC
Confidence 5799998777665544
No 8
>COG3085 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=1.56 E-value=1e+03 Score=19.04 Aligned_cols=6 Identities=83% Similarity=1.725 Sum_probs=0.0
Q ss_pred cccccc
Q psy14223 4 CRGERA 9 (173)
Q Consensus 4 ~~~~~~ 9 (173)
|||+|+
T Consensus 64 crger~ 69 (112)
T COG3085 64 CRGERE 69 (112)
T ss_pred HcCCch
No 9
>PF14813 NADH_B2: NADH dehydrogenase 1 beta subcomplex subunit 2
Probab=1.33 E-value=1.7e+03 Score=16.26 Aligned_cols=10 Identities=50% Similarity=0.481 Sum_probs=0.0
Q ss_pred CCCCCCCccc
Q psy14223 157 EKRGPGDKEE 166 (173)
Q Consensus 157 ~~rip~~k~~ 166 (173)
+++||.|+++
T Consensus 62 ELGIppdd~~ 71 (71)
T PF14813_consen 62 ELGIPPDDEE 71 (71)
T ss_pred hcCCCCCCCC
No 10
>cd03724 SOCS_ASB5 SOCS (suppressors of cytokine signaling) box of ASB5-like proteins. ASB family members have a C-terminal SOCS box and an N-terminal ankyrin-related sequence. ASB5 has been implicated in the initiation of arteriogenesis. The general function of the SOCS box is the recruitment of the ubiquitin-transferase system. The SOCS box interacts with Elongins B and C, Cullin-5 or Cullin-2, Rbx-1, and E2. Therefore, SOCS-box-containing proteins probably function as E3 ubiquitin ligases and mediate the degradation of proteins associated through their N-terminal regions.
Probab=1.26 E-value=7.4e+02 Score=16.20 Aligned_cols=5 Identities=60% Similarity=1.118 Sum_probs=0.0
Q ss_pred Ccccc
Q psy14223 1 MQACR 5 (173)
Q Consensus 1 ~~~~~ 5 (173)
||.||
T Consensus 7 ~~lCR 11 (42)
T cd03724 7 CQLCR 11 (42)
T ss_pred HHHHH
Done!