Query psy14223
Match_columns 173
No_of_seqs 28 out of 30
Neff 3.1
Searched_HMMs 29240
Date Fri Aug 16 22:33:52 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy14223.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/14223hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3h11_B Caspase-8; cell death, 17.2 29 0.001 28.6 0.1 9 1-9 141-149 (271)
2 3od5_A Caspase-6; caspase doma 16.8 30 0.001 28.6 0.1 9 1-9 137-145 (278)
3 1nw9_B Caspase 9, apoptosis-re 14.7 30 0.001 28.3 -0.4 9 1-9 145-153 (277)
4 3sir_A Caspase; hydrolase; 2.6 14.4 34 0.0012 27.9 -0.2 9 1-9 135-143 (259)
5 1m72_A Caspase-1; caspase, cys 14.0 40 0.0014 27.8 0.1 9 1-9 147-155 (272)
6 4ehd_A Caspase-3; caspase, apo 13.7 41 0.0014 28.0 0.1 9 1-9 160-168 (277)
7 3e4c_A Caspase-1; zymogen, inf 12.4 43 0.0015 28.2 -0.1 9 1-9 180-188 (302)
8 2fp3_A Caspase NC; apoptosis, 12.4 43 0.0015 28.3 -0.1 9 1-9 181-189 (316)
9 2j32_A Caspase-3; Pro-caspase3 11.5 42 0.0014 27.1 -0.5 9 1-9 132-140 (250)
10 2nn3_C Caspase-1; cysteine pro 10.6 54 0.0018 27.9 -0.1 9 1-9 175-183 (310)
No 1
>3h11_B Caspase-8; cell death, apoptosis, caspase, alternative splicing, HOST- virus interaction, polymorphism, cytoplasm, disease mutation; 1.90A {Homo sapiens} SCOP: c.17.1.1 PDB: 2k7z_A 1i4e_B 2fun_B 2c2z_B*
Probab=17.23 E-value=29 Score=28.60 Aligned_cols=9 Identities=44% Similarity=1.036 Sum_probs=7.2
Q ss_pred Ccccccccc
Q psy14223 1 MQACRGERA 9 (173)
Q Consensus 1 ~~~~~~~~~ 9 (173)
+|||||...
T Consensus 141 iQACRG~~~ 149 (271)
T 3h11_B 141 IQACQGDNY 149 (271)
T ss_dssp EESCCSSBC
T ss_pred EeccCCCcc
Confidence 599999764
No 2
>3od5_A Caspase-6; caspase domain, apoptotic protease, hydrolase-hydrolase INHI complex; 1.60A {Homo sapiens} SCOP: c.17.1.0 PDB: 3k7e_A 3s70_A 3v6m_A 3v6l_A 3nr2_A 4fxo_A 2wdp_A 3nkf_A 3s8e_A 4ejf_A 3qnw_A* 3p4u_A* 3p45_B 3qnw_B* 3p4u_B*
Probab=16.76 E-value=30 Score=28.59 Aligned_cols=9 Identities=56% Similarity=1.184 Sum_probs=7.3
Q ss_pred Ccccccccc
Q psy14223 1 MQACRGERA 9 (173)
Q Consensus 1 ~~~~~~~~~ 9 (173)
+|||||...
T Consensus 137 iQACRG~~~ 145 (278)
T 3od5_A 137 IQACRGNQH 145 (278)
T ss_dssp EESCCSSBC
T ss_pred EecCCCCcc
Confidence 599999764
No 3
>1nw9_B Caspase 9, apoptosis-related cysteine protease; XIAP, caspase inhibition, caspase activation, dimerization; 2.40A {Homo sapiens} SCOP: c.17.1.1 PDB: 1jxq_A* 2ar9_A
Probab=14.69 E-value=30 Score=28.29 Aligned_cols=9 Identities=56% Similarity=1.088 Sum_probs=4.4
Q ss_pred Ccccccccc
Q psy14223 1 MQACRGERA 9 (173)
Q Consensus 1 ~~~~~~~~~ 9 (173)
+|||||...
T Consensus 145 iQACRG~~~ 153 (277)
T 1nw9_B 145 IQACGGEQK 153 (277)
T ss_dssp EEEEC----
T ss_pred EeccCCCcc
Confidence 599999865
No 4
>3sir_A Caspase; hydrolase; 2.68A {Drosophila melanogaster} PDB: 3sip_A
Probab=14.39 E-value=34 Score=27.91 Aligned_cols=9 Identities=56% Similarity=1.235 Sum_probs=7.1
Q ss_pred Ccccccccc
Q psy14223 1 MQACRGERA 9 (173)
Q Consensus 1 ~~~~~~~~~ 9 (173)
+|||||...
T Consensus 135 iQACRG~~~ 143 (259)
T 3sir_A 135 IQACQGDRL 143 (259)
T ss_dssp EEEETTSCE
T ss_pred EecCCCCcc
Confidence 599999753
No 5
>1m72_A Caspase-1; caspase, cysteine protease, hydrolase-hydrolase inhibitor CO; 2.30A {Spodoptera frugiperda} SCOP: c.17.1.1 PDB: 3sip_B
Probab=14.01 E-value=40 Score=27.80 Aligned_cols=9 Identities=56% Similarity=1.235 Sum_probs=7.3
Q ss_pred Ccccccccc
Q psy14223 1 MQACRGERA 9 (173)
Q Consensus 1 ~~~~~~~~~ 9 (173)
+|||||...
T Consensus 147 iqACRg~~~ 155 (272)
T 1m72_A 147 IQACQGDRL 155 (272)
T ss_dssp EESCSSSBC
T ss_pred EeCCCCCcc
Confidence 599999765
No 6
>4ehd_A Caspase-3; caspase, apoptosis, allosteric inhibition; 1.58A {Homo sapiens} PDB: 4ehk_A 4ehf_A 4ehn_A 1cp3_A 4ehh_A 4eha_A 4ehl_A 1i3o_A
Probab=13.67 E-value=41 Score=27.96 Aligned_cols=9 Identities=56% Similarity=1.091 Sum_probs=7.2
Q ss_pred Ccccccccc
Q psy14223 1 MQACRGERA 9 (173)
Q Consensus 1 ~~~~~~~~~ 9 (173)
+|||||...
T Consensus 160 iQACRG~~~ 168 (277)
T 4ehd_A 160 IQACRGTEL 168 (277)
T ss_dssp EESCCSSBC
T ss_pred EecCCCCcc
Confidence 599999754
No 7
>3e4c_A Caspase-1; zymogen, inflammasome, ICE, IL-1B, innate immunity, apoptosis, hydrolase, protease protease; 2.05A {Homo sapiens}
Probab=12.37 E-value=43 Score=28.17 Aligned_cols=9 Identities=44% Similarity=0.822 Sum_probs=7.3
Q ss_pred Ccccccccc
Q psy14223 1 MQACRGERA 9 (173)
Q Consensus 1 ~~~~~~~~~ 9 (173)
+|||||...
T Consensus 180 IQACRG~~~ 188 (302)
T 3e4c_A 180 IQAARGDSP 188 (302)
T ss_dssp EEEECSSSC
T ss_pred EECCCCCCC
Confidence 599999764
No 8
>2fp3_A Caspase NC; apoptosis, initiator caspase activation, dimerization, active site conformation, hydrolysis/apoptosis complex; 2.50A {Drosophila melanogaster}
Probab=12.37 E-value=43 Score=28.30 Aligned_cols=9 Identities=22% Similarity=0.438 Sum_probs=3.5
Q ss_pred Ccccccccc
Q psy14223 1 MQACRGERA 9 (173)
Q Consensus 1 ~~~~~~~~~ 9 (173)
+|||||...
T Consensus 181 iQACRG~~~ 189 (316)
T 2fp3_A 181 FPFARGDEY 189 (316)
T ss_dssp ESCC-----
T ss_pred EecCCCCcc
Confidence 599999765
No 9
>2j32_A Caspase-3; Pro-caspase3, thiol protease, hydrolase, hydrolase-hydrolase inhibitor complex; 1.30A {Homo sapiens} PDB: 2j30_A 3h0e_A* 2j33_A 3pd1_A 2j31_A 3pcx_A 1nms_A* 1nmq_A* 3deh_A* 3dei_A* 3dej_A* 3dek_A* 3pd0_A 3itn_A 1qx3_A
Probab=11.54 E-value=42 Score=27.12 Aligned_cols=9 Identities=56% Similarity=1.091 Sum_probs=7.3
Q ss_pred Ccccccccc
Q psy14223 1 MQACRGERA 9 (173)
Q Consensus 1 ~~~~~~~~~ 9 (173)
+|||||...
T Consensus 132 iqACRg~~~ 140 (250)
T 2j32_A 132 IQACRGTEL 140 (250)
T ss_dssp EESCSEEEC
T ss_pred EecccCCcc
Confidence 599999764
No 10
>2nn3_C Caspase-1; cysteine protease, hydrolase; 3.00A {Spodoptera frugiperda}
Probab=10.55 E-value=54 Score=27.86 Aligned_cols=9 Identities=56% Similarity=1.235 Sum_probs=7.1
Q ss_pred Ccccccccc
Q psy14223 1 MQACRGERA 9 (173)
Q Consensus 1 ~~~~~~~~~ 9 (173)
+|||||...
T Consensus 175 iQACRG~~~ 183 (310)
T 2nn3_C 175 IQACQGDRL 183 (310)
T ss_dssp EEEECCCCC
T ss_pred EecccCCcc
Confidence 599999764
Done!