RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy14223
(173 letters)
>gnl|CDD|116627 pfam08017, Fibrinogen_BP, Fibrinogen binding protein. Proteins in
this family bind to fibrinogen. Members of this family
includes the fibrinogen receptor, FbsA, which mediates
platelet aggregation.
Length = 393
Score = 51.4 bits (122), Expect = 3e-08
Identities = 55/160 (34%), Positives = 72/160 (45%)
Query: 8 RASDKEERGPGDKEERGPGDKKARGPGDKEERGPGDKEERGPGDEEERGPGDKEKRGPGD 67
R D E R G+ ER D + R G+ ER D E R G+ ER D E R G+
Sbjct: 34 RQRDAENRSQGNVLERRQRDAENRSQGNVLERRQRDAENRSQGNVLERRQRDAENRSQGN 93
Query: 68 KEERGPGDKEKRGPGDKEERGPGDKEERGPGDREKRGPGDKEERGPGDKEKRGPGDKEKR 127
ER D E + G+ ER D E + G+ +R D E R G+ +R D E +
Sbjct: 94 VLERRQRDVENKSQGNVLERRQRDVENKSQGNVLERRQRDAENRSQGNVLERRQRDAENK 153
Query: 128 GPGDKEERGPGDKEERGPGDKEERGQGDKEKRGPGDKEER 167
G+ ER D E R G+ ER Q D E + G+ ER
Sbjct: 154 SQGNVLERRQRDAENRSQGNVLERRQRDVENKSQGNVLER 193
Score = 51.4 bits (122), Expect = 3e-08
Identities = 54/160 (33%), Positives = 72/160 (45%)
Query: 8 RASDKEERGPGDKEERGPGDKKARGPGDKEERGPGDKEERGPGDEEERGPGDKEKRGPGD 67
R D E R G+ ER D + R G+ ER D E R G+ ER D E + G+
Sbjct: 50 RQRDAENRSQGNVLERRQRDAENRSQGNVLERRQRDAENRSQGNVLERRQRDVENKSQGN 109
Query: 68 KEERGPGDKEKRGPGDKEERGPGDKEERGPGDREKRGPGDKEERGPGDKEKRGPGDKEKR 127
ER D E + G+ ER D E R G+ +R D E + G+ +R D E R
Sbjct: 110 VLERRQRDVENKSQGNVLERRQRDAENRSQGNVLERRQRDAENKSQGNVLERRQRDAENR 169
Query: 128 GPGDKEERGPGDKEERGPGDKEERGQGDKEKRGPGDKEER 167
G+ ER D E + G+ ER Q D E + G+ ER
Sbjct: 170 SQGNVLERRQRDVENKSQGNVLERRQRDVENKSQGNVLER 209
Score = 51.4 bits (122), Expect = 4e-08
Identities = 53/160 (33%), Positives = 72/160 (45%)
Query: 8 RASDKEERGPGDKEERGPGDKKARGPGDKEERGPGDKEERGPGDEEERGPGDKEKRGPGD 67
R D E R G+ ER D + + G+ ER D E + G+ ER D E R G+
Sbjct: 82 RQRDAENRSQGNVLERRQRDVENKSQGNVLERRQRDVENKSQGNVLERRQRDAENRSQGN 141
Query: 68 KEERGPGDKEKRGPGDKEERGPGDKEERGPGDREKRGPGDKEERGPGDKEKRGPGDKEKR 127
ER D E + G+ ER D E R G+ +R D E + G+ +R D E +
Sbjct: 142 VLERRQRDAENKSQGNVLERRQRDAENRSQGNVLERRQRDVENKSQGNVLERRQRDVENK 201
Query: 128 GPGDKEERGPGDKEERGPGDKEERGQGDKEKRGPGDKEER 167
G+ ER D E R G+ ER Q D E + G+ ER
Sbjct: 202 SQGNVLERRQRDAENRSQGNVLERRQRDVENKSQGNVLER 241
Score = 50.2 bits (119), Expect = 1e-07
Identities = 54/161 (33%), Positives = 72/161 (44%)
Query: 7 ERASDKEERGPGDKEERGPGDKKARGPGDKEERGPGDKEERGPGDEEERGPGDKEKRGPG 66
R D E R G+ ER D + R G+ ER D E + G+ ER D E + G
Sbjct: 65 RRQRDAENRSQGNVLERRQRDAENRSQGNVLERRQRDVENKSQGNVLERRQRDVENKSQG 124
Query: 67 DKEERGPGDKEKRGPGDKEERGPGDKEERGPGDREKRGPGDKEERGPGDKEKRGPGDKEK 126
+ ER D E R G+ ER D E + G+ +R D E R G+ +R D E
Sbjct: 125 NVLERRQRDAENRSQGNVLERRQRDAENKSQGNVLERRQRDAENRSQGNVLERRQRDVEN 184
Query: 127 RGPGDKEERGPGDKEERGPGDKEERGQGDKEKRGPGDKEER 167
+ G+ ER D E + G+ ER Q D E R G+ ER
Sbjct: 185 KSQGNVLERRQRDVENKSQGNVLERRQRDAENRSQGNVLER 225
Score = 49.5 bits (117), Expect = 2e-07
Identities = 52/160 (32%), Positives = 72/160 (45%)
Query: 8 RASDKEERGPGDKEERGPGDKKARGPGDKEERGPGDKEERGPGDEEERGPGDKEKRGPGD 67
R D E + G+ ER D + + G+ ER D E R G+ ER D E + G+
Sbjct: 98 RQRDVENKSQGNVLERRQRDVENKSQGNVLERRQRDAENRSQGNVLERRQRDAENKSQGN 157
Query: 68 KEERGPGDKEKRGPGDKEERGPGDKEERGPGDREKRGPGDKEERGPGDKEKRGPGDKEKR 127
ER D E R G+ ER D E + G+ +R D E + G+ +R D E R
Sbjct: 158 VLERRQRDAENRSQGNVLERRQRDVENKSQGNVLERRQRDVENKSQGNVLERRQRDAENR 217
Query: 128 GPGDKEERGPGDKEERGPGDKEERGQGDKEKRGPGDKEER 167
G+ ER D E + G+ ER Q D E + G+ ER
Sbjct: 218 SQGNVLERRQRDVENKSQGNVLERRQRDVENKSQGNVLER 257
Score = 48.7 bits (115), Expect = 3e-07
Identities = 52/160 (32%), Positives = 72/160 (45%)
Query: 14 ERGPGDKEERGPGDKKARGPGDKEERGPGDKEERGPGDEEERGPGDKEKRGPGDKEERGP 73
ER D E R G+ R D E R G+ ER D E R G+ +R D E R
Sbjct: 32 ERRQRDAENRSQGNVLERRQRDAENRSQGNVLERRQRDAENRSQGNVLERRQRDAENRSQ 91
Query: 74 GDKEKRGPGDKEERGPGDKEERGPGDREKRGPGDKEERGPGDKEKRGPGDKEKRGPGDKE 133
G+ +R D E + G+ ER D E + G+ ER D E R G+ +R D E
Sbjct: 92 GNVLERRQRDVENKSQGNVLERRQRDVENKSQGNVLERRQRDAENRSQGNVLERRQRDAE 151
Query: 134 ERGPGDKEERGPGDKEERGQGDKEKRGPGDKEERAPGGLV 173
+ G+ ER D E R QG+ +R D E ++ G ++
Sbjct: 152 NKSQGNVLERRQRDAENRSQGNVLERRQRDVENKSQGNVL 191
Score = 47.9 bits (113), Expect = 5e-07
Identities = 52/150 (34%), Positives = 68/150 (45%)
Query: 18 GDKEERGPGDKKARGPGDKEERGPGDKEERGPGDEEERGPGDKEKRGPGDKEERGPGDKE 77
G+ ER D + R G+ ER D E R G+ ER D E R G+ ER D E
Sbjct: 28 GNVLERRQRDAENRSQGNVLERRQRDAENRSQGNVLERRQRDAENRSQGNVLERRQRDAE 87
Query: 78 KRGPGDKEERGPGDKEERGPGDREKRGPGDKEERGPGDKEKRGPGDKEKRGPGDKEERGP 137
R G+ ER D E + G+ +R D E + G+ +R D E R G+ ER
Sbjct: 88 NRSQGNVLERRQRDVENKSQGNVLERRQRDVENKSQGNVLERRQRDAENRSQGNVLERRQ 147
Query: 138 GDKEERGPGDKEERGQGDKEKRGPGDKEER 167
D E + G+ ER Q D E R G+ ER
Sbjct: 148 RDAENKSQGNVLERRQRDAENRSQGNVLER 177
Score = 46.0 bits (108), Expect = 2e-06
Identities = 50/160 (31%), Positives = 72/160 (45%)
Query: 14 ERGPGDKEERGPGDKKARGPGDKEERGPGDKEERGPGDEEERGPGDKEKRGPGDKEERGP 73
ER D E R G+ R D E + G+ ER D E R G+ +R D E +
Sbjct: 128 ERRQRDAENRSQGNVLERRQRDAENKSQGNVLERRQRDAENRSQGNVLERRQRDVENKSQ 187
Query: 74 GDKEKRGPGDKEERGPGDKEERGPGDREKRGPGDKEERGPGDKEKRGPGDKEKRGPGDKE 133
G+ +R D E + G+ ER D E R G+ ER D E + G+ +R D E
Sbjct: 188 GNVLERRQRDVENKSQGNVLERRQRDAENRSQGNVLERRQRDVENKSQGNVLERRQRDVE 247
Query: 134 ERGPGDKEERGPGDKEERGQGDKEKRGPGDKEERAPGGLV 173
+ G+ ER D E R QG+ +R D E ++ G ++
Sbjct: 248 NKSQGNVLERRQRDAENRSQGNVLERRQRDVENKSQGNVL 287
Score = 44.8 bits (105), Expect = 6e-06
Identities = 48/148 (32%), Positives = 67/148 (45%)
Query: 26 GDKKARGPGDKEERGPGDKEERGPGDEEERGPGDKEKRGPGDKEERGPGDKEKRGPGDKE 85
G+ R D E R G+ ER D E R G+ +R D E R G+ +R D E
Sbjct: 28 GNVLERRQRDAENRSQGNVLERRQRDAENRSQGNVLERRQRDAENRSQGNVLERRQRDAE 87
Query: 86 ERGPGDKEERGPGDREKRGPGDKEERGPGDKEKRGPGDKEKRGPGDKEERGPGDKEERGP 145
R G+ ER D E + G+ ER D E + G+ +R D E R G+ ER
Sbjct: 88 NRSQGNVLERRQRDVENKSQGNVLERRQRDVENKSQGNVLERRQRDAENRSQGNVLERRQ 147
Query: 146 GDKEERGQGDKEKRGPGDKEERAPGGLV 173
D E + QG+ +R D E R+ G ++
Sbjct: 148 RDAENKSQGNVLERRQRDAENRSQGNVL 175
>gnl|CDD|233191 TIGR00927, 2A1904, K+-dependent Na+/Ca+ exchanger. [Transport and
binding proteins, Cations and iron carrying compounds].
Length = 1096
Score = 45.0 bits (106), Expect = 6e-06
Identities = 34/170 (20%), Positives = 59/170 (34%), Gaps = 3/170 (1%)
Query: 5 RGERASDKEER---GPGDKEERGPGDKKARGPGDKEERGPGDKEERGPGDEEERGPGDKE 61
GER ++ ER G+ E G+ + G + + + E E+ G G+ E
Sbjct: 641 TGERTGEEGERPTEAEGENGEESGGEAEQEGETETKGENESEGEIPAERKGEQEGEGEIE 700
Query: 62 KRGPGDKEERGPGDKEKRGPGDKEERGPGDKEERGPGDREKRGPGDKEERGPGDKEKRGP 121
+ K E + E G + E + E G E G+ E G + E G
Sbjct: 701 AKEADHKGETEAEEVEHEGETEAEGTEDEGEIETGEEGEEVEDEGEGEAEGKHEVETEGD 760
Query: 122 GDKEKRGPGDKEERGPGDKEERGPGDKEERGQGDKEKRGPGDKEERAPGG 171
+ + + E + E ++ +GD+ G + E G
Sbjct: 761 RKETEHEGETEAEGKEDEDEGEIQAGEDGEMKGDEGAEGKVEHEGETEAG 810
Score = 43.8 bits (103), Expect = 2e-05
Identities = 32/170 (18%), Positives = 57/170 (33%), Gaps = 12/170 (7%)
Query: 11 DKEERGPGDKEERGPGDKKARGPGDKEERGPGDKEERGPGDEEERGP---GDKEKRGPGD 67
+ E G+ E+ G + K + E E+ G G+ E + G+ E
Sbjct: 658 ENGEESGGEAEQEGETETKGENESEGEIPAERKGEQEGEGEIEAKEADHKGETEAEEVEH 717
Query: 68 KEERGPGDKEKRGPGDKEERG-------PGDKEERGPGDREKRGPGDKEERGPGDKEKRG 120
+ E E G + E G G+ E + + E + E + K
Sbjct: 718 EGETEAEGTEDEGEIETGEEGEEVEDEGEGEAEGKHEVETEGDRKETEHEGETEAEGKED 777
Query: 121 PGDKEKRGPGDKEERGPGDKEERGPGDKEERGQGDKEKRGPGDKEERAPG 170
+ E + D E + GD+ G + E + ++ G E +A
Sbjct: 778 EDEGEIQAGEDGEMK--GDEGAEGKVEHEGETEAGEKDEHEGQSETQADD 825
Score = 43.1 bits (101), Expect = 3e-05
Identities = 28/143 (19%), Positives = 49/143 (34%), Gaps = 2/143 (1%)
Query: 17 PGDKEERGPGDKKA--RGPGDKEERGPGDKEERGPGDEEERGPGDKEKRGPGDKEERGPG 74
ER + + G+ E G+ E+ G + + + E E+ G G
Sbjct: 638 AEHTGERTGEEGERPTEAEGENGEESGGEAEQEGETETKGENESEGEIPAERKGEQEGEG 697
Query: 75 DKEKRGPGDKEERGPGDKEERGPGDREKRGPGDKEERGPGDKEKRGPGDKEKRGPGDKEE 134
+ E + K E + E G + E + E G +E G+ E G + E
Sbjct: 698 EIEAKEADHKGETEAEEVEHEGETEAEGTEDEGEIETGEEGEEVEDEGEGEAEGKHEVET 757
Query: 135 RGPGDKEERGPGDKEERGQGDKE 157
G + E + E + + E
Sbjct: 758 EGDRKETEHEGETEAEGKEDEDE 780
Score = 40.7 bits (95), Expect = 2e-04
Identities = 31/161 (19%), Positives = 65/161 (40%), Gaps = 6/161 (3%)
Query: 6 GERASDKEERGPGDKEERGPGDKKARGPGDKEERGPGDKEERGPGDEEERGPGDKEKRGP 65
GE + E+ G G+ E + + + + E + + + E + D E +
Sbjct: 735 GEEGEEVEDEGEGEAEGKHEVETEGDRKETEHEGETEAEGKEDEDEGEIQAGEDGEMK-- 792
Query: 66 GDKEERGPGDKEKRGPGDKEERGPGDKEERGPGDREKRGPGDKEERGPGDKEKRGPGDKE 125
GD+ G + E +++ G E + K G++E + E +G ++
Sbjct: 793 GDEGAEGKVEHEGETEAGEKDEHEGQSETQADDTEVKDETGEQE----LNAENQGEAKQD 848
Query: 126 KRGPGDKEERGPGDKEERGPGDKEERGQGDKEKRGPGDKEE 166
++G GD EE ++EE + ++E+ ++EE
Sbjct: 849 EKGVDGGGGSDGGDSEEEEEEEEEEEEEEEEEEEEEEEEEE 889
Score = 40.0 bits (93), Expect = 3e-04
Identities = 33/149 (22%), Positives = 57/149 (38%), Gaps = 1/149 (0%)
Query: 18 GDKEERGPGDKKARGPGDKEERGPGDKEERGPGDEEERGPGDKEKRGPGDKEERGPGDKE 77
GD E ++ G++ G+ E G+ E+ G + + + E E
Sbjct: 633 GDVAEAEHTGERTGEEGERPTEAEGENGEESGGEAEQEGETETKGENESEGEIPAERKGE 692
Query: 78 KRGPGDKEERGPGDKEERGPGDREKRGPGDKEERGPGDKEKRGPGDKEKRGPGDKEERGP 137
+ G G+ E + K E + E G + E + + G +E G+ E G
Sbjct: 693 QEGEGEIEAKEADHKGETEAEEVEHEGETEAEGTEDEGEIETGEEGEEVEDEGEGEAEGK 752
Query: 138 GDKEERGPGDKEERGQGDKEKRGPGDKEE 166
+ E G KE +G+ E G D++E
Sbjct: 753 HEVETEGD-RKETEHEGETEAEGKEDEDE 780
Score = 39.6 bits (92), Expect = 4e-04
Identities = 30/129 (23%), Positives = 50/129 (38%), Gaps = 4/129 (3%)
Query: 42 GDKEERGPGDEEERGPGDKEKRGPGDKEERGPGDKEKRGPGDKEERGPGDKEERGPGDR- 100
GD E E G++ G+ E G+ E+ G+ E +G + E P +R
Sbjct: 633 GDVAEAEHTGERTGEEGERPTEAEGENGEESGGEAEQ--EGETETKGENESEGEIPAERK 690
Query: 101 -EKRGPGDKEERGPGDKEKRGPGDKEKRGPGDKEERGPGDKEERGPGDKEERGQGDKEKR 159
E+ G G+ E + K + + E G + E + E G +E +G+ E
Sbjct: 691 GEQEGEGEIEAKEADHKGETEAEEVEHEGETEAEGTEDEGEIETGEEGEEVEDEGEGEAE 750
Query: 160 GPGDKEERA 168
G + E
Sbjct: 751 GKHEVETEG 759
Score = 39.6 bits (92), Expect = 4e-04
Identities = 34/161 (21%), Positives = 60/161 (37%), Gaps = 8/161 (4%)
Query: 5 RGERASDKEERGPGDKEERGPGDKKARGP---GDKEERG---PGDKEERGPGDEEE--RG 56
+GE S+ E E+ G G+ +A+ G+ E G+ E G DE E G
Sbjct: 676 KGENESEGEIPAERKGEQEGEGEIEAKEADHKGETEAEEVEHEGETEAEGTEDEGEIETG 735
Query: 57 PGDKEKRGPGDKEERGPGDKEKRGPGDKEERGPGDKEERGPGDREKRGPGDKEERGPGDK 116
+E G+ E G + E G + E + E + E ++ GD+
Sbjct: 736 EEGEEVEDEGEGEAEGKHEVETEGDRKETEHEGETEAEGKEDEDEGEIQAGEDGEMKGDE 795
Query: 117 EKRGPGDKEKRGPGDKEERGPGDKEERGPGDKEERGQGDKE 157
G + E +++ G E + + + G++E
Sbjct: 796 GAEGKVEHEGETEAGEKDEHEGQSETQADDTEVKDETGEQE 836
Score = 34.2 bits (78), Expect = 0.028
Identities = 26/124 (20%), Positives = 46/124 (37%), Gaps = 4/124 (3%)
Query: 50 GDEEERGPGDKEKRGPGDKEERGPGDKEKRGPGDKEERGPGDK--EERGPGDREKRGPGD 107
GD E + G++ G+ + G+ E+ G + E G+ G+
Sbjct: 633 GDVAEAEHTGERTGEEGERPTEAEGENGEESGGEAEQEGETETKGENESEGEIPAERKGE 692
Query: 108 KEERGPGD-KEKRGPGDKEKRGPGDKEERGPGDKEERGPGDKEERGQGDKEKRGPGDKEE 166
+E G + KE G+ E + E E+ G + E G+ + E G G+ E
Sbjct: 693 QEGEGEIEAKEADHKGETEAEEVEHEGETEAEGTEDEGEIETGEEGE-EVEDEGEGEAEG 751
Query: 167 RAPG 170
+
Sbjct: 752 KHEV 755
Score = 28.8 bits (64), Expect = 1.7
Identities = 17/82 (20%), Positives = 31/82 (37%), Gaps = 6/82 (7%)
Query: 90 GDKEERGPGDREKRGPGDKEERGPGDKEKRGPGDKEKRGPGDKEERGPGDKEERGPGDKE 149
GD E G++ G+ + G+ E+ G+ E +G E G+
Sbjct: 633 GDVAEAEHTGERTGEEGERPTEAEGENGEESGGEAEQ--EGETETKG----ENESEGEIP 686
Query: 150 ERGQGDKEKRGPGDKEERAPGG 171
+G++E G + +E G
Sbjct: 687 AERKGEQEGEGEIEAKEADHKG 708
>gnl|CDD|237171 PRK12678, PRK12678, transcription termination factor Rho;
Provisional.
Length = 672
Score = 44.5 bits (106), Expect = 8e-06
Identities = 33/164 (20%), Positives = 59/164 (35%), Gaps = 3/164 (1%)
Query: 7 ERASDKEERGPGDKEERGPGDKKARGPGDKEERGPGDKEERGP---GDEEERGPGDKEKR 63
E A +E R G+ RG K G D ER DE R ++++
Sbjct: 123 EAAQARERRERGEAARRGAARKAGEGGEQPATEARADAAERTEEEERDERRRRGDREDRQ 182
Query: 64 GPGDKEERGPGDKEKRGPGDKEERGPGDKEERGPGDREKRGPGDKEERGPGDKEKRGPGD 123
++ ERG ++ R D++ R ++ +R + G + R D+ D
Sbjct: 183 AEAERGERGRREERGRDGDDRDRRDRREQGDRREERGRRDGGDRRGRRRRRDRRDARGDD 242
Query: 124 KEKRGPGDKEERGPGDKEERGPGDKEERGQGDKEKRGPGDKEER 167
+ + G G RG ++ +G + G ++E
Sbjct: 243 NREDRGDRDGDDGEGRGGRRGRRFRDRDRRGRRGGDGGNEREPE 286
Score = 44.1 bits (105), Expect = 1e-05
Identities = 31/165 (18%), Positives = 53/165 (32%), Gaps = 3/165 (1%)
Query: 7 ERASDKEERGPGDKEERGPGDKKARGPGDKEERGPGDKEERGPGDEEERGPGDKEKRGPG 66
A+ ++ P + + E R G+ +RG
Sbjct: 83 AAAAARQAEQPAAEAAAAKAEAAPAARAAAAAAAEAASAPEAAQARERRERGEAARRGAA 142
Query: 67 DKEERGPGDKEKRGPGDKEERGPGDK--EERGPGDREKRGP-GDKEERGPGDKEKRGPGD 123
K G D ER ++ E R GDRE R ++ ERG ++ R D
Sbjct: 143 RKAGEGGEQPATEARADAAERTEEEERDERRRRGDREDRQAEAERGERGRREERGRDGDD 202
Query: 124 KEKRGPGDKEERGPGDKEERGPGDKEERGQGDKEKRGPGDKEERA 168
+++R ++ +R G + R + D+ D E
Sbjct: 203 RDRRDRREQGDRREERGRRDGGDRRGRRRRRDRRDARGDDNREDR 247
Score = 43.4 bits (103), Expect = 2e-05
Identities = 29/160 (18%), Positives = 49/160 (30%), Gaps = 4/160 (2%)
Query: 2 QACRGERASDKEERGPGDKEERGPGDKKARGPGDKEERGPGDKEERGPGDEEERGPGDKE 61
A + +E R G+ RG K G D ER ++
Sbjct: 110 AAAAAAAEAASAPEAAQARERRERGEAARRGAARKAGEGGEQPATEARADAAERTEEEER 169
Query: 62 KRGPGDKEERGPGDKEKRGP-GDKEERGPGDKEERGPGDREKRGPGDKEERGPGDKEKRG 120
+ + +RG G +EERG + RE+ ++ R G +
Sbjct: 170 DERRRRGDREDRQAEAERGERGRREERGRDGDDRDRRDRREQGDRREERGRRDGGDRRGR 229
Query: 121 PGDKEKRGPGDKEERGPGDKEERGPGDKEERGQGDKEKRG 160
+++R + R GD E G + +R
Sbjct: 230 RRRRDRRDARGDDNREDRG---DRDGDDGEGRGGRRGRRF 266
Score = 42.6 bits (101), Expect = 4e-05
Identities = 30/164 (18%), Positives = 50/164 (30%), Gaps = 2/164 (1%)
Query: 2 QACRGERASDKEERGPGDKEERGPGDKKARGPGDKEERGPGDKEERGPGDEEERGPGDKE 61
A + E+ + + + A +E R G+ RG K
Sbjct: 86 AARQAEQPAAEAAAAKAEAAPAARAAAAAAAEAASAPEAAQARERRERGEAARRGAARKA 145
Query: 62 KRGPGDKEERGPGDKEKRGPGDK--EERGPGDKEERGPGDREKRGPGDKEERGPGDKEKR 119
G D +R ++ E R GD+E+R +E GD R
Sbjct: 146 GEGGEQPATEARADAAERTEEEERDERRRRGDREDRQAEAERGERGRREERGRDGDDRDR 205
Query: 120 GPGDKEKRGPGDKEERGPGDKEERGPGDKEERGQGDKEKRGPGD 163
++ ++ R GD+ R +GD + GD
Sbjct: 206 RDRREQGDRREERGRRDGGDRRGRRRRRDRRDARGDDNREDRGD 249
Score = 41.8 bits (99), Expect = 7e-05
Identities = 26/161 (16%), Positives = 48/161 (29%), Gaps = 3/161 (1%)
Query: 7 ERASDKEERGPGDKEERGPGDKKARGPGDKEERGPGDKEERGPGDEEERGPGDKEKRGPG 66
A+ R A K E P + E P + R
Sbjct: 72 APAAAARRAARAAAAARQAEQPAAEAAAAKAEAAPAARAAAAAAAEAASAPEAAQARERR 131
Query: 67 DKEERGPGDKEKRGPGDKEERGPGDKEERGPGDREKRGPGDKEERGPGDKEKRGPGDKEK 126
++ E ++ E+ + + E+ E R GD+E R +
Sbjct: 132 ERGEAARRGAARKAGEGGEQPATEARADAAERTEEEER---DERRRRGDREDRQAEAERG 188
Query: 127 RGPGDKEERGPGDKEERGPGDKEERGQGDKEKRGPGDKEER 167
+E GD +R ++ + ++ +R GD+ R
Sbjct: 189 ERGRREERGRDGDDRDRRDRREQGDRREERGRRDGGDRRGR 229
Score = 39.9 bits (94), Expect = 3e-04
Identities = 26/154 (16%), Positives = 41/154 (26%), Gaps = 2/154 (1%)
Query: 20 KEERGPGDKKARGPGDKEERGPGDKEERGPGDEEERGPGDKEKRGPGDKEERGPGDKEKR 79
KE RG G A + P + +
Sbjct: 56 KEARGGGAAAAAATPAAPAAAARRAARAAAAARQAEQPAAEAAAAKAEAAPAARAAAAAA 115
Query: 80 GPGDKEERGPGDKEERGPGDREKRGPGDKEERGPGDKEKRGPGDKEKRGPGDK--EERGP 137
+E R G+ +RG K G D +R ++ E R
Sbjct: 116 AEAASAPEAAQARERRERGEAARRGAARKAGEGGEQPATEARADAAERTEEEERDERRRR 175
Query: 138 GDKEERGPGDKEERGQGDKEKRGPGDKEERAPGG 171
GD+E+R + +E+ GD +R
Sbjct: 176 GDREDRQAEAERGERGRREERGRDGDDRDRRDRR 209
Score = 31.8 bits (73), Expect = 0.16
Identities = 17/123 (13%), Positives = 37/123 (30%)
Query: 5 RGERASDKEERGPGDKEERGPGDKKARGPGDKEERGPGDKEERGPGDEEERGPGDKEKRG 64
ER + D++ ++ R + D+ +R + G ++
Sbjct: 166 EEERDERRRRGDREDRQAEAERGERGRREERGRDGDDRDRRDRREQGDRREERGRRDGGD 225
Query: 65 PGDKEERGPGDKEKRGPGDKEERGPGDKEERGPGDREKRGPGDKEERGPGDKEKRGPGDK 124
+ R + ++ + G G R R D++ RG + +
Sbjct: 226 RRGRRRRRDRRDARGDDNREDRGDRDGDDGEGRGGRRGRRFRDRDRRGRRGGDGGNEREP 285
Query: 125 EKR 127
E R
Sbjct: 286 ELR 288
>gnl|CDD|235401 PRK05306, infB, translation initiation factor IF-2; Validated.
Length = 746
Score = 38.7 bits (91), Expect = 8e-04
Identities = 22/126 (17%), Positives = 37/126 (29%)
Query: 43 DKEERGPGDEEERGPGDKEKRGPGDKEERGPGDKEKRGPGDKEERGPGDKEERGPGDREK 102
KEE EEE +E +EE + E + P + E
Sbjct: 44 RKEEAKREAEEEAKAEAEEAAAAEAEEEAKAEAAAAAPAEEAAEAAAAAEAAARPAEDEA 103
Query: 103 RGPGDKEERGPGDKEKRGPGDKEKRGPGDKEERGPGDKEERGPGDKEERGQGDKEKRGPG 162
P + R P K+ K + + + G R +G + +R
Sbjct: 104 ARPAEAAARRPKAKKAAKKKKGPKPKKKKPKRKAARGGKRGKGGKGRRRRRGRRRRRKKK 163
Query: 163 DKEERA 168
K++
Sbjct: 164 KKQKPT 169
>gnl|CDD|227596 COG5271, MDN1, AAA ATPase containing von Willebrand factor type A
(vWA) domain [General function prediction only].
Length = 4600
Score = 34.2 bits (78), Expect = 0.028
Identities = 42/181 (23%), Positives = 68/181 (37%), Gaps = 29/181 (16%)
Query: 7 ERASDKEERGPGDKEERGPGDKKARGPGDKEERGPGDKEERGPGDEEERGPG---DKEKR 63
E+++ E KE+ D KA D++E+ ++ G ++E P + +
Sbjct: 3925 EQSAANNESDLVSKED----DNKALEDKDRQEKEDEEEMSDDVGIDDEIQPDIQENNSQP 3980
Query: 64 GPGDKEERGPGD---KEKRGPGDKE--------ERGPGDKEERGPGDREKRGPGDKEERG 112
P +++ P D EK G K+ E +KEE D EK P E+
Sbjct: 3981 PPENEDLDLPEDLKLDEKEGDVSKDSDLEDMDMEAADENKEE---ADAEKDEPMQDED-- 4035
Query: 113 PGDKEKRGPGDKEKRGPGDKEERGPGDKEERGPGDKEERGQGDKE--KRGPGDKEERAPG 170
P ++ D ++ D E E G EE Q ++E + G EE G
Sbjct: 4036 PLEENNTLDEDIQQDDFSDLAE-DDEKMNEDGF---EENVQENEESTEDGVKSDEELEQG 4091
Query: 171 G 171
Sbjct: 4092 E 4092
Score = 27.3 bits (60), Expect = 6.5
Identities = 28/130 (21%), Positives = 46/130 (35%), Gaps = 11/130 (8%)
Query: 45 EERGPGDEEERGPGDKEKRGPGDKEERGPGDKEKRGPGDKEERGPGDKEER----GPGDR 100
+E D E E+ ++ + + + + DK+ + D+EE G D
Sbjct: 3909 DEPNEEDLLETEQKSNEQSAANNESDLVSKEDDNKALEDKDRQEKEDEEEMSDDVGIDDE 3968
Query: 101 EKRGPGDKEERGPGDKEKRG-PGD---KEKRGPGDKEERGPGDKEERGPGDKEERGQGDK 156
+ + + P + E P D EK G K+ E +KEE D
Sbjct: 3969 IQPDIQENNSQPPPENEDLDLPEDLKLDEKEGDVSKDSDLEDMDMEAADENKEE---ADA 4025
Query: 157 EKRGPGDKEE 166
EK P E+
Sbjct: 4026 EKDEPMQDED 4035
>gnl|CDD|130366 TIGR01299, synapt_SV2, synaptic vesicle protein SV2. This model
describes a tightly conserved subfamily of the larger
family of sugar (and other) transporters described by
PFAM model pfam00083. Members of this subfamily include
closely related forms SV2A and SV2B of synaptic vesicle
protein from vertebrates and a more distantly related
homolog (below trusted cutoff) from Drosophila
melanogaster. Members are predicted to have two sets of
six transmembrane helices.
Length = 742
Score = 31.9 bits (72), Expect = 0.15
Identities = 23/105 (21%), Positives = 37/105 (35%), Gaps = 1/105 (0%)
Query: 7 ERASDKEERGPGDKEERGPGDKKARGPGDKEERGPGDKEERGPGDEEERGPGDKEKRGPG 66
+R+ + E D + P D +RG +E + G +E+ + E +G
Sbjct: 43 QRSYSRFEDEDDDDDFPAPADGYSRGEAADDEEEGEASSDATEGHDEDDEIYEGEYQGIP 102
Query: 67 DKEERGPGDKEKRG-PGDKEERGPGDKEERGPGDREKRGPGDKEE 110
E G + G P D E G+ E D+EE
Sbjct: 103 RAENGGKDEIMADGAPKAGVRDELKDGEGPPGGEGEAERRADEEE 147
Score = 29.9 bits (67), Expect = 0.75
Identities = 24/113 (21%), Positives = 36/113 (31%), Gaps = 1/113 (0%)
Query: 7 ERASDKEERGPGDKEERGPGDKKARGPGDKEERGPGDKEERGPGDEEERGPGDKEKRGPG 66
+RA D+ + + E D P D RG +E + G E
Sbjct: 35 DRAQDEYSQRSYSRFEDEDDDDDFPAPADGYSRGEAADDEEEGEASSDATEGHDEDDEIY 94
Query: 67 DKEERGPGDKEKRGPGDKEERG-PGDKEERGPGDREKRGPGDKEERGPGDKEK 118
+ E +G E G + G P D E G+ E D+E+
Sbjct: 95 EGEYQGIPRAENGGKDEIMADGAPKAGVRDELKDGEGPPGGEGEAERRADEEE 147
>gnl|CDD|220648 pfam10243, MIP-T3, Microtubule-binding protein MIP-T3. This
protein, which interacts with both microtubules and
TRAF3 (tumour necrosis factor receptor-associated factor
3), is conserved from worms to humans. The N-terminal
region is the microtubule binding domain and is
well-conserved; the C-terminal 100 residues, also
well-conserved, constitute the coiled-coil region which
binds to TRAF3. The central region of the protein is
rich in lysine and glutamic acid and carries KKE motifs
which may also be necessary for tubulin-binding, but
this region is the least well-conserved.
Length = 506
Score = 30.6 bits (69), Expect = 0.41
Identities = 29/130 (22%), Positives = 55/130 (42%), Gaps = 1/130 (0%)
Query: 22 ERGPGDKKARGPGDKEERGPGDKEERGPGDEEERGPGDKEKRGPGDKEERGPGDKEKRGP 81
+ + K ++E+ KEE+ E+ + K KE+R P +KEK
Sbjct: 92 TKPAKEPKNESGKEEEKEKEQVKEEKKKKKEKPKEEPKDRKPKEEAKEKRPPKEKEKEKE 151
Query: 82 GDKEERGPGDKEERGPGDREKRGPGDKEERGPGDKEKRGPGDKEKRGPGDKEERGPGDKE 141
EE ++E++ R K P ++ P +K+K P ++EK+ +E +E
Sbjct: 152 KKVEEPRDREEEKKRERVRAKSRPKKPPKKKPPNKKKE-PPEEEKQRQAAREAVKGKPEE 210
Query: 142 ERGPGDKEER 151
++E+
Sbjct: 211 PDVNEEREKE 220
Score = 29.1 bits (65), Expect = 1.4
Identities = 28/170 (16%), Positives = 61/170 (35%), Gaps = 5/170 (2%)
Query: 3 ACRGERASDKEERGPGDKEERGPGDKKARGPGDKEERGPGDKEERGPGDEEERGPGDKEK 62
A + + A + + ++E+ K+ + ++ + + +E+R P KEK
Sbjct: 89 AAKTKPAKEPKNESGKEEEKEKEQVKEEKKKKKEKPKEEPKDRKPKEEAKEKRPP--KEK 146
Query: 63 RGPGDKEERGPGDKEKRGPGDKEERGPGDKEERGPGDREKRGPGDKEERGPGD---KEKR 119
+K+ P D+E+ ++ K+ K+ +EE+ K
Sbjct: 147 EKEKEKKVEEPRDREEEKKRERVRAKSRPKKPPKKKPPNKKKEPPEEEKQRQAAREAVKG 206
Query: 120 GPGDKEKRGPGDKEERGPGDKEERGPGDKEERGQGDKEKRGPGDKEERAP 169
P + + +KEE D+E +E+ + E + P
Sbjct: 207 KPEEPDVNEEREKEEDDGKDRETTTSPMEEDESRQSSEISRRSSSSLKKP 256
>gnl|CDD|185603 PTZ00415, PTZ00415, transmission-blocking target antigen s230;
Provisional.
Length = 2849
Score = 29.6 bits (66), Expect = 1.0
Identities = 14/56 (25%), Positives = 26/56 (46%), Gaps = 4/56 (7%)
Query: 19 DKEERGPGDKKARGPGDKEERGPGDKEERGPGDEEERGPGDKEKRGPGDKEERGPG 74
+E+ P D D E+ D+++ D+EE ++E +G D++E G
Sbjct: 141 AEEDMSPRDNFVID-DDDED---EDEDDDDEEDDEEEEEEEEEIKGFDDEDEEDEG 192
Score = 28.1 bits (62), Expect = 2.8
Identities = 15/57 (26%), Positives = 26/57 (45%), Gaps = 4/57 (7%)
Query: 115 DKEKRGPGDKEKRGPGDKEERGPGDKEERGPGDKEERGQGDKEKRGPGDKEERAPGG 171
+E P D D E+ D+++ D EE + ++E +G D++E GG
Sbjct: 141 AEEDMSPRDNFVID-DDDED---EDEDDDDEEDDEEEEEEEEEIKGFDDEDEEDEGG 193
Score = 26.5 bits (58), Expect = 8.7
Identities = 16/64 (25%), Positives = 26/64 (40%), Gaps = 12/64 (18%)
Query: 51 DEEERGPGDKEKRGPGDKEERGPGDKEKRGPGDKEERGPGDKEERGPGDREKRGPGDKEE 110
EE+ P D D +E D + D+E+ ++EE E +G D++E
Sbjct: 141 AEEDMSPRDNFV--IDDDDEDEDEDDD-----DEEDDEEEEEEEE-----EIKGFDDEDE 188
Query: 111 RGPG 114
G
Sbjct: 189 EDEG 192
>gnl|CDD|234229 TIGR03490, Mycoplas_LppA, mycoides cluster lipoprotein, LppA/P72
family. Members of this protein family occur in
Mycoplasma mycoides, Mycoplasma hyopneumoniae, and
related Mycoplasmas in small paralogous families that
may also include truncated forms and/or pseudogenes.
Members are predicted lipoproteins with a conserved
signal peptidase II processing and lipid attachment
site. Note that the name for certain characterized
members, p72, reflects an anomalous apparent molecular
weight, given a theoretical MW of about 61 kDa.
Length = 541
Score = 28.3 bits (63), Expect = 2.7
Identities = 12/91 (13%), Positives = 29/91 (31%), Gaps = 2/91 (2%)
Query: 76 KEKRGPGDKEERGPGDKEERGPGDREKRGPGDKEERGPGDKEKRGPGDKEKRGPGDKEER 135
EK+ E P ++ + + ++ ++K P +E
Sbjct: 34 PEKKPEIKPNENTPKIPKKPDNKEPSENNNNKSNNENKDEENPSSTNPEKKPDPSKNKEE 93
Query: 136 GPGDKEERGPGDKEERGQGDKEKRGPGDKEE 166
+K + P +++ Q D+ D+
Sbjct: 94 --IEKPKDEPKKPDKKPQADQPNNVHADQPN 122
Score = 27.5 bits (61), Expect = 4.6
Identities = 15/91 (16%), Positives = 28/91 (30%), Gaps = 2/91 (2%)
Query: 60 KEKRGPGDKEERGPGDKEKRGPGDKEERGPGDKEERGPGDREKRGPGDKEERGPGDKEKR 119
EK+ E P +K + E + E + E++ K K
Sbjct: 34 PEKKPEIKPNENTPKIPKKPDNKEPSENNNNKSNNENKDE-ENPSSTNPEKKPDPSKNKE 92
Query: 120 GPGDKEKRGPGDKEERGPGDKEERGPGDKEE 150
+K K P +++ D+ D+
Sbjct: 93 EI-EKPKDEPKKPDKKPQADQPNNVHADQPN 122
>gnl|CDD|233870 TIGR02442, Cob-chelat-sub, cobaltochelatase subunit.
Cobaltochelatase is responsible for the insertion of
cobalt into the corrin ring of coenzyme B12 during its
biosynthesis. Two versions have been well described.
CbiK/CbiX is a monomeric, anaerobic version which acts
early in the biosynthesis (pfam06180). CobNST is a
trimeric, ATP-dependent, aerobic version which acts late
in the biosynthesis (TIGR02257/TIGR01650/TIGR01651). A
number of genomes (actinobacteria, cyanobacteria,
betaproteobacteria and pseudomonads) which apparently
biosynthesize B12, encode a cobN gene but are
demonstrably lacking cobS and cobT. These genomes do,
however contain a homolog (modelled here) of the
magnesium chelatase subunits BchI/BchD family. Aside
from the cyanobacteria (which have a separate magnesium
chelatase trimer), these species do not make chlorins,
so do not have any use for a magnesium chelatase.
Furthermore, in nearly all cases the members of this
family are proximal to either CobN itself or other genes
involved in cobalt transport or B12 biosynthesis.
Length = 633
Score = 27.7 bits (62), Expect = 3.1
Identities = 26/112 (23%), Positives = 42/112 (37%), Gaps = 5/112 (4%)
Query: 41 PGDKEERGPGDEEERGPGDKEKRGPGDKEERGPGDKEKRGPGDKEERGPGDKEERGPGDR 100
P K+E+ ++ E D EK G+ + G + PG+ +E+ P +EE
Sbjct: 317 PQGKDEKDLEEKPEEPGPDPEKPDEGEDDAEQSGPRGHPTPGNDDEKEPDPQEEADGQGS 376
Query: 101 EKRGPGD----KEERGPGDKEKRGPGDKEKRGPGDKEERGPGDKEERGPGDK 148
GD + P + + G + R D R + RGP D
Sbjct: 377 STDPAGDIFRIRVLAPPQARARGASG-RRSRTRSDSRGRYVRARRNRGPPDD 427
>gnl|CDD|217503 pfam03344, Daxx, Daxx Family. The Daxx protein (also known as the
Fas-binding protein) is thought to play a role in
apoptosis, but precise role played by Daxx remains to be
determined. Daxx forms a complex with Axin.
Length = 715
Score = 27.2 bits (60), Expect = 5.7
Identities = 17/124 (13%), Positives = 39/124 (31%)
Query: 2 QACRGERASDKEERGPGDKEERGPGDKKARGPGDKEERGPGDKEERGPGDEEERGPGDKE 61
++ +AS P + ++ ++EE +++E + E+ ++
Sbjct: 417 RSSDPSKASSTSGESPSMASQESEEEESVEEEEEEEEEEEEEEQESEEEEGEDEEEEEEV 476
Query: 62 KRGPGDKEERGPGDKEKRGPGDKEERGPGDKEERGPGDREKRGPGDKEERGPGDKEKRGP 121
+ G +EE + + EE E R G + + + P
Sbjct: 477 EADNGSEEEMEGSSEGDGDGEEPEEDAERRNSEMAGISRMSEGQQPRGSSVQPESPQEEP 536
Query: 122 GDKE 125
E
Sbjct: 537 LQPE 540
>gnl|CDD|235409 PRK05325, PRK05325, hypothetical protein; Provisional.
Length = 401
Score = 26.7 bits (60), Expect = 7.4
Identities = 12/38 (31%), Positives = 15/38 (39%), Gaps = 1/38 (2%)
Query: 16 GPGDKEERGPGDKKARGPGDKEERGPGDKEERGPGDEE 53
GPG+ E GD+ R G G G + G E
Sbjct: 63 GPGNGEFV-VGDRIGRPQGGGGGGGQGGGDGEGEDYFE 99
>gnl|CDD|236766 PRK10811, rne, ribonuclease E; Reviewed.
Length = 1068
Score = 26.5 bits (59), Expect = 9.8
Identities = 18/93 (19%), Positives = 37/93 (39%), Gaps = 1/93 (1%)
Query: 77 EKRGPGDKEERGPGDKEERGPGDREKRGPGDKEERGPGDKEKRGPGDKEKRGPGDKEERG 136
E+ P ++ K ER DR K ++ +R + +E R ++ R
Sbjct: 584 EETKPQEQPAPKAEAKPER-QQDRRKPRQNNRRDRNERRDTRDNRTRREGRENREENRRN 642
Query: 137 PGDKEERGPGDKEERGQGDKEKRGPGDKEERAP 169
+++ +E + EK D++++AP
Sbjct: 643 RRQAQQQTAETRESQQAEVTEKARTQDEQQQAP 675
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.300 0.138 0.409
Gapped
Lambda K H
0.267 0.0783 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 9,545,548
Number of extensions: 979208
Number of successful extensions: 1234
Number of sequences better than 10.0: 1
Number of HSP's gapped: 689
Number of HSP's successfully gapped: 252
Length of query: 173
Length of database: 10,937,602
Length adjustment: 90
Effective length of query: 83
Effective length of database: 6,945,742
Effective search space: 576496586
Effective search space used: 576496586
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 17 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 44 (21.9 bits)
S2: 55 (24.9 bits)