RPS-BLAST 2.2.26 [Sep-21-2011]

Database: pdb70 
           27,921 sequences; 6,701,793 total letters

Searching..................................................done

Query= psy14223
         (173 letters)



>1jmo_A HC-II, heparin cofactor II, HLS2, serin; serpin, thrombin,
           protease, inhibition, inhibitor, blood CLO; HET: TYS NDG
           NAG; 2.20A {Homo sapiens} SCOP: e.1.1.1 PDB: 1jmj_A*
          Length = 480

 Score = 42.0 bits (99), Expect = 3e-05
 Identities = 17/98 (17%), Positives = 31/98 (31%), Gaps = 3/98 (3%)

Query: 38  ERGPGDKEERGPGDEEERGP-GDKEKRGPGDKEERGPGDKEKRGPGDKEERGPGDKEERG 96
            +GP D+ E+G    +   P  ++            P D  K      +    G++++  
Sbjct: 2   SKGPLDQLEKGGETAQSADPQWEQLNNKNLSMPLL-PADFHKENTVTNDWIPEGEEDD-D 59

Query: 97  PGDREKRGPGDKEERGPGDKEKRGPGDKEKRGPGDKEE 134
             D EK    D +     D     P D +       + 
Sbjct: 60  YLDLEKIFSEDDDYIDIVDSLSVSPTDSDVSAGNILQL 97



 Score = 42.0 bits (99), Expect = 3e-05
 Identities = 16/98 (16%), Positives = 32/98 (32%), Gaps = 3/98 (3%)

Query: 14  ERGPGDKEERGPGDKKARGP-GDKEERGPGDKEERGPGDEEERGPGDKEKRGPGDKEERG 72
            +GP D+ E+G    ++  P  ++            P D  +      +    G++++  
Sbjct: 2   SKGPLDQLEKGGETAQSADPQWEQLNNKNLSMPLL-PADFHKENTVTNDWIPEGEEDD-D 59

Query: 73  PGDKEKRGPGDKEERGPGDKEERGPGDREKRGPGDKEE 110
             D EK    D +     D     P D +       + 
Sbjct: 60  YLDLEKIFSEDDDYIDIVDSLSVSPTDSDVSAGNILQL 97



 Score = 40.8 bits (96), Expect = 1e-04
 Identities = 17/93 (18%), Positives = 31/93 (33%), Gaps = 3/93 (3%)

Query: 78  KRGPGDKEERGPGDKEERGP-GDREKRGPGDKEERGPGDKEKRGPGDKEKRGPGDKEERG 136
            +GP D+ E+G    +   P  ++            P D  K      +    G++++  
Sbjct: 2   SKGPLDQLEKGGETAQSADPQWEQLNNKNLSMPLL-PADFHKENTVTNDWIPEGEEDD-D 59

Query: 137 PGDKEERGPGDKEERGQGDKEKRGPGDKEERAP 169
             D E+    D +     D     P D +  A 
Sbjct: 60  YLDLEKIFSEDDDYIDIVDSLSVSPTDSDVSAG 92



 Score = 31.9 bits (73), Expect = 0.086
 Identities = 8/54 (14%), Positives = 16/54 (29%), Gaps = 2/54 (3%)

Query: 118 KRGPGDKEKRGPGDKEERGP-GDKEERGPGDKEERGQGDKEKRGPGDKEERAPG 170
            +GP D+ ++G    +   P  ++              D  K      +    G
Sbjct: 2   SKGPLDQLEKGGETAQSADPQWEQLNNKNLSMPLLPA-DFHKENTVTNDWIPEG 54


>3iyo_A Capsid protein; amino acid sequence, cryoelectron microscopy,
           dimerization, image processing, computer-assist
           molecular sequence DATA; 10.50A {Hepatitis e virus}
          Length = 660

 Score = 31.1 bits (69), Expect = 0.19
 Identities = 14/111 (12%), Positives = 20/111 (18%), Gaps = 5/111 (4%)

Query: 24  GPGDKKARGPGDKEERGPGDKEERGPGDEEERGPGDKEKRGPG-----DKEERGPGDKEK 78
            P     +  G +  R  G       GD  +  P       P      D           
Sbjct: 17  LPAPPPGQPSGRRRGRRSGGSGGGFWGDRVDSQPFAIPYIHPTNPFAPDVTAAAGAGPRV 76

Query: 79  RGPGDKEERGPGDKEERGPGDREKRGPGDKEERGPGDKEKRGPGDKEKRGP 129
           R P         D+ +R      +R                          
Sbjct: 77  RQPARPLGSAWRDQAQRPAVASRRRPTTAGAAPLTAVAPAHDTPPVPDVDS 127



 Score = 30.3 bits (67), Expect = 0.35
 Identities = 14/111 (12%), Positives = 21/111 (18%), Gaps = 5/111 (4%)

Query: 16  GPGDKEERGPGDKKARGPGDKEERGPGDKEERGPGDEEERGPG-----DKEKRGPGDKEE 70
            P     +  G ++ R  G       GD+ +  P       P      D           
Sbjct: 17  LPAPPPGQPSGRRRGRRSGGSGGGFWGDRVDSQPFAIPYIHPTNPFAPDVTAAAGAGPRV 76

Query: 71  RGPGDKEKRGPGDKEERGPGDKEERGPGDREKRGPGDKEERGPGDKEKRGP 121
           R P         D+ +R       R                          
Sbjct: 77  RQPARPLGSAWRDQAQRPAVASRRRPTTAGAAPLTAVAPAHDTPPVPDVDS 127



 Score = 29.6 bits (65), Expect = 0.51
 Identities = 15/104 (14%), Positives = 19/104 (18%), Gaps = 5/104 (4%)

Query: 72  GPGDKEKRGPGDKEERGPGDKEERGPGDREKRGPGDKEERGPG-----DKEKRGPGDKEK 126
            P     +  G +  R  G       GDR    P       P      D           
Sbjct: 17  LPAPPPGQPSGRRRGRRSGGSGGGFWGDRVDSQPFAIPYIHPTNPFAPDVTAAAGAGPRV 76

Query: 127 RGPGDKEERGPGDKEERGPGDKEERGQGDKEKRGPGDKEERAPG 170
           R P         D+ +R       R                   
Sbjct: 77  RQPARPLGSAWRDQAQRPAVASRRRPTTAGAAPLTAVAPAHDTP 120



 Score = 29.6 bits (65), Expect = 0.57
 Identities = 17/111 (15%), Positives = 23/111 (20%), Gaps = 9/111 (8%)

Query: 64  GPGDKEERGPGDKEKRGPGDKEERGPGDKEERGPGDREKRGPG-----DKEERGPGDKEK 118
            P     +  G +  R  G       GD+ +  P       P      D           
Sbjct: 17  LPAPPPGQPSGRRRGRRSGGSGGGFWGDRVDSQPFAIPYIHPTNPFAPDVTAAAGAGPRV 76

Query: 119 RGPGDKEKRGPGDKEERGPGDKEERGPGDKEERGQGDKEKRGPGDKEERAP 169
           R P         D+ +R       R        G        P       P
Sbjct: 77  RQPARPLGSAWRDQAQRPAVASRRRPTT----AGAAPLTAVAPAHDTPPVP 123


  Database: pdb70
    Posted date:  Sep 4, 2012  3:40 AM
  Number of letters in database: 6,701,793
  Number of sequences in database:  27,921
  
Lambda     K      H
   0.300    0.138    0.409 

Gapped
Lambda     K      H
   0.267   0.0529    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 2,806,966
Number of extensions: 190425
Number of successful extensions: 170
Number of sequences better than 10.0: 1
Number of HSP's gapped: 110
Number of HSP's successfully gapped: 38
Length of query: 173
Length of database: 6,701,793
Length adjustment: 87
Effective length of query: 86
Effective length of database: 4,272,666
Effective search space: 367449276
Effective search space used: 367449276
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 17 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 44 (21.9 bits)
S2: 54 (25.0 bits)