BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= psy14224
         (150 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|2Y38|A Chain A, Laminin Alpha5 Chain N-Terminal Fragment
          Length = 403

 Score = 57.8 bits (138), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 40/110 (36%), Positives = 56/110 (50%), Gaps = 19/110 (17%)

Query: 10  LFPPIFNVASKSSIVVNATCGE------VGGP--EVYCKLKEH--RGKADTQ------CS 53
           L PP FN+A  + I  +ATCGE      V  P  ++YCKL      G    Q      C 
Sbjct: 11  LHPPYFNLAEGARITASATCGEEAPTRSVSRPTEDLYCKLVGGPVAGGDPAQTIQGQYCD 70

Query: 54  VCDASSSSPGKKHSIRYVLEQNNMNWWQSPTLHQGPQYEYVTITLDMKQV 103
           +C A++S+  K H +   ++     WWQSP L +G +Y  V +TLD+ QV
Sbjct: 71  ICTAANSN--KAHPVSNAID-GTERWWQSPPLSRGLEYNEVNVTLDLGQV 117


>pdb|4AQT|A Chain A, Laminin Gamma1 Ln-Le1-2 Structure
          Length = 375

 Score = 38.9 bits (89), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 29/96 (30%), Positives = 42/96 (43%), Gaps = 9/96 (9%)

Query: 12  PPIFNVASKSSIVVNATCGEVGGPEVYCKLKEHRGKADTQCSVCDASSSSPGKKHSIRYV 71
           P   N A   ++V   TCG    PE YC      G   + C +CDA       +H   ++
Sbjct: 21  PEFVNAAFNVTVVATNTCGTP--PEEYCVQTGVTGVTKS-CHLCDAGQQH--LQHGAAFL 75

Query: 72  LEQNN---MNWWQSPTLHQGPQY-EYVTITLDMKQV 103
            + NN     WWQS T+  G QY   + +TL + + 
Sbjct: 76  TDYNNQADTTWWQSQTMLAGVQYPNSINLTLHLGKA 111


>pdb|3PEB|A Chain A, The Structure Of A Creatine_n Superfamily Domain Of A
           Dipeptidase From Streptococcus Thermophilus
          Length = 137

 Score = 26.6 bits (57), Expect = 6.2,   Method: Compositional matrix adjust.
 Identities = 21/87 (24%), Positives = 34/87 (39%), Gaps = 2/87 (2%)

Query: 1   FTNELKVPGLFPPIFNVASKSSIVVNATCGEVGGPEVYCKLKEHRGKADTQCSVCDASSS 60
           F  E + P LF P   VA  SS++     G V     + K+K      D      +  + 
Sbjct: 48  FVYENREPALFVPALEVARASSVLDFPVFGYVDSENPWQKIKAGLASTDIPIIYAEFDNL 107

Query: 61  SPGKKHSIRYVLEQNNMNWWQSPTLHQ 87
           +  K   ++ V E    N   +P +H+
Sbjct: 108 NVTKFQGLQTVFEGRFENL--TPFIHK 132


>pdb|3PFE|A Chain A, Crystal Structure Of A M20a Metallo Peptidase (Dape,
           Lpg0809) From Legionella Pneumophila Subsp. Pneumophila
           Str. Philadelphia 1 At 1.50 A Resolution
          Length = 472

 Score = 26.6 bits (57), Expect = 6.3,   Method: Composition-based stats.
 Identities = 14/46 (30%), Positives = 24/46 (52%), Gaps = 1/46 (2%)

Query: 9   GLFPPIFNVASK-SSIVVNATCGEVGGPEVYCKLKEHRGKADTQCS 53
           G+    F VA +  S + +   GE+  P++YC + + R K   QC+
Sbjct: 230 GIVADSFRVARQLISRIEDENTGEIKLPQLYCDIPDERIKQAKQCA 275


>pdb|1VKD|A Chain A, Crystal Structure Of A Predicted Glycosidase (tm1225) From
           Thermotoga Maritima Msb8 At 2.10 A Resolution
 pdb|1VKD|B Chain B, Crystal Structure Of A Predicted Glycosidase (tm1225) From
           Thermotoga Maritima Msb8 At 2.10 A Resolution
 pdb|1VKD|C Chain C, Crystal Structure Of A Predicted Glycosidase (tm1225) From
           Thermotoga Maritima Msb8 At 2.10 A Resolution
 pdb|1VKD|D Chain D, Crystal Structure Of A Predicted Glycosidase (tm1225) From
           Thermotoga Maritima Msb8 At 2.10 A Resolution
 pdb|1VKD|E Chain E, Crystal Structure Of A Predicted Glycosidase (tm1225) From
           Thermotoga Maritima Msb8 At 2.10 A Resolution
 pdb|1VKD|F Chain F, Crystal Structure Of A Predicted Glycosidase (tm1225) From
           Thermotoga Maritima Msb8 At 2.10 A Resolution
          Length = 338

 Score = 26.2 bits (56), Expect = 7.4,   Method: Compositional matrix adjust.
 Identities = 12/33 (36%), Positives = 20/33 (60%), Gaps = 2/33 (6%)

Query: 59  SSSPGKKH--SIRYVLEQNNMNWWQSPTLHQGP 89
           S SP   H  + R+VL +++ NWW++  +  GP
Sbjct: 197 SESPDXIHWGNHRFVLGRSSYNWWENLKIGAGP 229


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.318    0.132    0.427 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,851,377
Number of Sequences: 62578
Number of extensions: 191109
Number of successful extensions: 395
Number of sequences better than 100.0: 6
Number of HSP's better than 100.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 388
Number of HSP's gapped (non-prelim): 9
length of query: 150
length of database: 14,973,337
effective HSP length: 90
effective length of query: 60
effective length of database: 9,341,317
effective search space: 560479020
effective search space used: 560479020
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 47 (22.7 bits)