BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy14224
(150 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|P25391|LAMA1_HUMAN Laminin subunit alpha-1 OS=Homo sapiens GN=LAMA1 PE=1 SV=2
Length = 3075
Score = 102 bits (253), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 49/98 (50%), Positives = 69/98 (70%), Gaps = 5/98 (5%)
Query: 9 GLFPPIFNVASKSSIVVNATCGEVGGPEVYCKLKEH---RGKADTQCSVCDASSSSPGKK 65
GLFP I N+AS + I NATCGE GPE++CKL EH R + QC +CD +S++P ++
Sbjct: 21 GLFPAILNLASNAHISTNATCGE-KGPEMFCKLVEHVPGRPVRNPQCRICDGNSANPRER 79
Query: 66 HSIRYVLEQNNMNWWQSPTLHQGPQYEYVTITLDMKQV 103
H I + ++ N NWWQSP++ G +Y +VTITLD++QV
Sbjct: 80 HPISHAIDGTN-NWWQSPSIQNGREYHWVTITLDLRQV 116
>sp|P19137|LAMA1_MOUSE Laminin subunit alpha-1 OS=Mus musculus GN=Lama1 PE=1 SV=1
Length = 3084
Score = 100 bits (250), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 48/98 (48%), Positives = 68/98 (69%), Gaps = 5/98 (5%)
Query: 9 GLFPPIFNVASKSSIVVNATCGEVGGPEVYCKLKEH---RGKADTQCSVCDASSSSPGKK 65
GLFP I N+A+ + I NATCGE G PE++CKL EH R QC VCD +S++P ++
Sbjct: 28 GLFPAILNLATNAHISANATCGEKG-PEMFCKLVEHVPGRPVRHAQCRVCDGNSTNPRER 86
Query: 66 HSIRYVLEQNNMNWWQSPTLHQGPQYEYVTITLDMKQV 103
H I + ++ N NWWQSP++ G +Y +VT+TLD++QV
Sbjct: 87 HPISHAIDGTN-NWWQSPSIQNGREYHWVTVTLDLRQV 123
>sp|P24043|LAMA2_HUMAN Laminin subunit alpha-2 OS=Homo sapiens GN=LAMA2 PE=1 SV=4
Length = 3122
Score = 96.7 bits (239), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 48/98 (48%), Positives = 67/98 (68%), Gaps = 5/98 (5%)
Query: 9 GLFPPIFNVASKSSIVVNATCGEVGGPEVYCKLKEH---RGKADTQCSVCDASSSSPGKK 65
GLFP + N+AS + I NATCGE G PE+YCKL EH + + QC +C+ +SS+P ++
Sbjct: 38 GLFPAVLNLASNALITTNATCGEKG-PEMYCKLVEHVPGQPVRNPQCRICNQNSSNPNQR 96
Query: 66 HSIRYVLEQNNMNWWQSPTLHQGPQYEYVTITLDMKQV 103
H I ++ N WWQSP++ G +Y YVTITLD++QV
Sbjct: 97 HPITNAIDGKN-TWWQSPSIKNGIEYHYVTITLDLQQV 133
>sp|Q60675|LAMA2_MOUSE Laminin subunit alpha-2 OS=Mus musculus GN=Lama2 PE=1 SV=1
Length = 3106
Score = 95.9 bits (237), Expect = 9e-20, Method: Compositional matrix adjust.
Identities = 48/98 (48%), Positives = 67/98 (68%), Gaps = 5/98 (5%)
Query: 9 GLFPPIFNVASKSSIVVNATCGEVGGPEVYCKLKEH---RGKADTQCSVCDASSSSPGKK 65
GLFP + N+AS + I NATCGE GPE+YCKL EH + + QC +C+ +SS+P ++
Sbjct: 34 GLFPAVLNLASNALITTNATCGE-KGPEMYCKLVEHVPGQPVRNPQCRICNQNSSNPYQR 92
Query: 66 HSIRYVLEQNNMNWWQSPTLHQGPQYEYVTITLDMKQV 103
H I ++ N WWQSP++ G +Y YVTITLD++QV
Sbjct: 93 HPITNAIDGKN-TWWQSPSIKNGVEYHYVTITLDLQQV 129
>sp|Q16787|LAMA3_HUMAN Laminin subunit alpha-3 OS=Homo sapiens GN=LAMA3 PE=1 SV=2
Length = 3333
Score = 60.5 bits (145), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 41/105 (39%), Positives = 52/105 (49%), Gaps = 12/105 (11%)
Query: 10 LFPPIFNVASKSSIVVNATCGEVG------GPEVYCKL---KEHRGKADT-QCSVCD-AS 58
L P FN+A + I ATCGE G PE+YCKL G T Q CD +
Sbjct: 47 LHPTYFNLAEAARIWATATCGERGPGEGRPQPELYCKLVGGPTAPGSGHTIQGQFCDYCN 106
Query: 59 SSSPGKKHSIRYVLEQNNMNWWQSPTLHQGPQYEYVTITLDMKQV 103
S P K H + ++ + WWQSP L G QY V +TLD+ Q+
Sbjct: 107 SEDPRKAHPVTNAID-GSERWWQSPPLSSGTQYNRVNLTLDLGQL 150
>sp|Q61001|LAMA5_MOUSE Laminin subunit alpha-5 OS=Mus musculus GN=Lama5 PE=1 SV=4
Length = 3718
Score = 59.3 bits (142), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 41/122 (33%), Positives = 60/122 (49%), Gaps = 24/122 (19%)
Query: 3 NELKVPG-----LFPPIFNVASKSSIVVNATCGE------VGGP--EVYCKL-------- 41
E + PG L PP FN+A + I +ATCGE V P ++YCKL
Sbjct: 38 GEARTPGGDGFSLHPPYFNLAEGARITASATCGEEAPTRSVSRPTEDLYCKLVGGPVAGG 97
Query: 42 KEHRGKADTQCSVCDASSSSPGKKHSIRYVLEQNNMNWWQSPTLHQGPQYEYVTITLDMK 101
++ C +C A++S+ K H + ++ WWQSP L +G +Y V +TLD+
Sbjct: 98 DPNQTIQGQYCDICTAANSN--KAHPVSNAID-GTERWWQSPPLSRGLEYNEVNVTLDLG 154
Query: 102 QV 103
QV
Sbjct: 155 QV 156
>sp|Q61789|LAMA3_MOUSE Laminin subunit alpha-3 OS=Mus musculus GN=Lama3 PE=1 SV=3
Length = 3333
Score = 58.5 bits (140), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 39/105 (37%), Positives = 53/105 (50%), Gaps = 12/105 (11%)
Query: 10 LFPPIFNVASKSSIVVNATCGEVG------GPEVYCKL---KEHRGKADT-QCSVCDASS 59
L PP FN+A + I ATCGE PE++CKL +G T Q CD +
Sbjct: 44 LHPPYFNLAQAARIWATATCGERDPEVSRPRPELFCKLVGGPAAQGSGHTIQGQFCDYCN 103
Query: 60 SSPGKK-HSIRYVLEQNNMNWWQSPTLHQGPQYEYVTITLDMKQV 103
S +K H + ++ + WWQSP L G QY V +TLD+ Q+
Sbjct: 104 SEDSRKAHPASHAID-GSERWWQSPPLSSGTQYNQVNLTLDLGQL 147
>sp|Q00174|LAMA_DROME Laminin subunit alpha OS=Drosophila melanogaster GN=LanA PE=1 SV=2
Length = 3712
Score = 58.2 bits (139), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 35/101 (34%), Positives = 52/101 (51%), Gaps = 9/101 (8%)
Query: 10 LFPPIFNVASKSSIVVNATCG-EVGGPEVYCKL------KEHRGKADTQCSVCD-ASSSS 61
L PP FN+A+ I ATCG + GPE+YCKL +H + Q VCD +
Sbjct: 24 LTPPYFNLATGRKIYATATCGQDTDGPELYCKLVGANTEHDHIDYSVIQGQVCDYCDPTV 83
Query: 62 PGKKHSIRYVLEQNNMNWWQSPTLHQGPQYEYVTITLDMKQ 102
P + H ++ WWQSP L +G ++ V +T++ +Q
Sbjct: 84 PERNHPPENAIDGTEA-WWQSPPLSRGMKFNEVNLTINFEQ 123
>sp|O15230|LAMA5_HUMAN Laminin subunit alpha-5 OS=Homo sapiens GN=LAMA5 PE=1 SV=8
Length = 3695
Score = 57.4 bits (137), Expect = 3e-08, Method: Composition-based stats.
Identities = 40/113 (35%), Positives = 57/113 (50%), Gaps = 25/113 (22%)
Query: 10 LFPPIFNVASKSSIVVNATCGEV----GGP----EVYCKL-----------KEHRGKADT 50
L PP FN+A + I +ATCGE G P ++YCKL + RG+
Sbjct: 45 LHPPYFNLAEGARIAASATCGEEAPARGSPRPTEDLYCKLVGGPVAGGDPNQTIRGQ--- 101
Query: 51 QCSVCDASSSSPGKKHSIRYVLEQNNMNWWQSPTLHQGPQYEYVTITLDMKQV 103
C +C A++S+ K H ++ WWQSP L +G +Y V +TLD+ QV
Sbjct: 102 YCDICTAANSN--KAHPASNAIDGTE-RWWQSPPLSRGLEYNEVNVTLDLGQV 151
>sp|Q9R0B6|LAMC3_MOUSE Laminin subunit gamma-3 OS=Mus musculus GN=Lamc3 PE=2 SV=2
Length = 1581
Score = 42.7 bits (99), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 31/99 (31%), Positives = 45/99 (45%), Gaps = 13/99 (13%)
Query: 11 FPPIFNVASKSSIVVNATCGEVGGPEVYCKLKEHRGK--ADTQCSVCDASSSSPGKKHSI 68
P N A + TCG PE +C H G A QC CD + PG++H
Sbjct: 45 LPEFENAAFGRRAEASHTCGRP--PEDFCP---HVGAPGAGLQCQRCD--DADPGRRHDA 97
Query: 69 RYVLE---QNNMNWWQSPTLHQGPQY-EYVTITLDMKQV 103
Y+ + ++ WWQSP++ G QY V +TL + +
Sbjct: 98 SYLTDFHSPDDSTWWQSPSMAFGVQYPTSVNLTLSLGKA 136
>sp|Q18823|LAM2_CAEEL Laminin-like protein lam-2 OS=Caenorhabditis elegans GN=lam-2 PE=1
SV=3
Length = 1633
Score = 42.0 bits (97), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 28/87 (32%), Positives = 36/87 (41%), Gaps = 7/87 (8%)
Query: 12 PPIFNVASKSSIVVNATCGEVGGPEVYCKLKEHRGKADTQCSVCDASSSSPGKKHSIRYV 71
P N A + V TCG P +C H G+ C CD G H +Y+
Sbjct: 53 PDFVNAAFNLEVQVTNTCG-TKRPTKFCVQSGHTGQRSV-CETCD--DRHEGFSHPAKYL 108
Query: 72 LE---QNNMNWWQSPTLHQGPQYEYVT 95
+ NN WWQS T+ +G QY T
Sbjct: 109 TDFNVGNNETWWQSDTMQEGQQYPTTT 135
Score = 29.3 bits (64), Expect = 8.0, Method: Compositional matrix adjust.
Identities = 11/21 (52%), Positives = 13/21 (61%)
Query: 124 NNMNWWQSPTLHQGPQYEYVT 144
NN WWQS T+ +G QY T
Sbjct: 115 NNETWWQSDTMQEGQQYPTTT 135
>sp|P11047|LAMC1_HUMAN Laminin subunit gamma-1 OS=Homo sapiens GN=LAMC1 PE=1 SV=3
Length = 1609
Score = 40.8 bits (94), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 30/97 (30%), Positives = 43/97 (44%), Gaps = 9/97 (9%)
Query: 11 FPPIFNVASKSSIVVNATCGEVGGPEVYCKLKEHRGKADTQCSVCDASSSSPGKKHSIRY 70
P N A ++V TCG PE YC G + C +CDA P +H +
Sbjct: 51 MPEFVNAAFNVTVVATNTCGTP--PEEYCVQTGVTGVTKS-CHLCDAGQ--PHLQHGAAF 105
Query: 71 VLEQNNM---NWWQSPTLHQGPQY-EYVTITLDMKQV 103
+ + NN WWQS T+ G QY + +TL + +
Sbjct: 106 LTDYNNQADTTWWQSQTMLAGVQYPSSINLTLHLGKA 142
>sp|A0JP86|LAMC1_XENTR Laminin subunit gamma-1 OS=Xenopus tropicalis GN=lamc1 PE=2 SV=1
Length = 1592
Score = 40.8 bits (94), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 30/97 (30%), Positives = 44/97 (45%), Gaps = 9/97 (9%)
Query: 11 FPPIFNVASKSSIVVNATCGEVGGPEVYCKLKEHRGKADTQCSVCDASSSSPGKKHSIRY 70
P N A +++V TCG PE YC G + C +CD S +H Y
Sbjct: 34 MPEFVNAAFNATVVATNTCGTP--PEEYCVQTGVTGVTKS-CHICD--SGQFHLQHGAEY 88
Query: 71 VLEQNN---MNWWQSPTLHQGPQY-EYVTITLDMKQV 103
+ + NN + WWQS T+ G QY + +TL + +
Sbjct: 89 LTDYNNQAEITWWQSQTMLAGIQYPSTINLTLHLGKA 125
>sp|Q21313|EPI1_CAEEL Laminin-like protein epi-1 OS=Caenorhabditis elegans GN=epi-1 PE=1
SV=1
Length = 3672
Score = 40.4 bits (93), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 32/122 (26%), Positives = 52/122 (42%), Gaps = 33/122 (27%)
Query: 10 LFPPIFNVASKSSIVVNATCGEVGG---PEVYCKL---------KEHRGKADTQ------ 51
L P ++ + I +TCGE+ G E+YC L + + D Q
Sbjct: 30 LTPSQITISHRKPITATSTCGEIQGQPVTEIYCSLTGSTQYTPLNSYSYQDDEQQKSWSQ 89
Query: 52 -----------CSVCDASSSSPGKKHSIRYVLEQNNMNWWQSPTLHQGPQYEYVTITLDM 100
C C+A + + H +++ NN +WW SP L +G Q+ V IT+D+
Sbjct: 90 YENPMVRGGHGCGHCNAGNEN---SHPAANMVDGNN-SWWMSPPLSRGLQHNEVNITIDL 145
Query: 101 KQ 102
+Q
Sbjct: 146 EQ 147
>sp|P02468|LAMC1_MOUSE Laminin subunit gamma-1 OS=Mus musculus GN=Lamc1 PE=1 SV=2
Length = 1607
Score = 40.0 bits (92), Expect = 0.005, Method: Composition-based stats.
Identities = 27/83 (32%), Positives = 36/83 (43%), Gaps = 8/83 (9%)
Query: 12 PPIFNVASKSSIVVNATCGEVGGPEVYCKLKEHRGKADTQCSVCDASSSSPGKKHSIRYV 71
P N A ++V TCG PE YC G + C +CDA +H ++
Sbjct: 50 PEFVNAAFNVTVVATNTCGT--PPEEYCVQTGVTGVTKS-CHLCDAGQQH--LQHGAAFL 104
Query: 72 LEQNNM---NWWQSPTLHQGPQY 91
+ NN WWQS T+ G QY
Sbjct: 105 TDYNNQADTTWWQSQTMLAGVQY 127
>sp|Q2HXW4|NET1_PIG Netrin-1 OS=Sus scrofa GN=NTN1 PE=2 SV=1
Length = 600
Score = 40.0 bits (92), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 28/94 (29%), Positives = 42/94 (44%), Gaps = 7/94 (7%)
Query: 11 FPPIFNVASKSSIVVNATCGEVGGPEVYCKLKEHRGKADTQCSVCDASSSSPGKKHSIRY 70
P N A + V++TCG P YC + E + C +C+A S P K H +
Sbjct: 52 IPDFVNAAFGKDVRVSSTCGRP--PARYCVVSERGEERLRSCHLCNA--SDPKKAHPPAF 107
Query: 71 VLEQN---NMNWWQSPTLHQGPQYEYVTITLDMK 101
+ + N N+ WQS Q P +T++L K
Sbjct: 108 LTDLNNPHNLTCWQSENYLQFPHNVTLTLSLGKK 141
>sp|O95631|NET1_HUMAN Netrin-1 OS=Homo sapiens GN=NTN1 PE=1 SV=2
Length = 604
Score = 39.7 bits (91), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 28/94 (29%), Positives = 42/94 (44%), Gaps = 7/94 (7%)
Query: 11 FPPIFNVASKSSIVVNATCGEVGGPEVYCKLKEHRGKADTQCSVCDASSSSPGKKHSIRY 70
P N A + V++TCG P YC + E + C +C+A S P K H +
Sbjct: 52 IPDFVNAAFGKDVRVSSTCGRP--PARYCVVSERGEERLRSCHLCNA--SDPKKAHPPAF 107
Query: 71 VLEQN---NMNWWQSPTLHQGPQYEYVTITLDMK 101
+ + N N+ WQS Q P +T++L K
Sbjct: 108 LTDLNNPHNLTCWQSENYLQFPHNVTLTLSLGKK 141
>sp|Q9Y6N6|LAMC3_HUMAN Laminin subunit gamma-3 OS=Homo sapiens GN=LAMC3 PE=1 SV=3
Length = 1575
Score = 39.7 bits (91), Expect = 0.007, Method: Composition-based stats.
Identities = 31/93 (33%), Positives = 45/93 (48%), Gaps = 10/93 (10%)
Query: 13 PIFNVASKSSIV-VNATCGEVGGPEVYCKLKEHRGKADTQCSVCDASSSSPGKKHSIRYV 71
P+F A+ + + TCG PE +C G A C CDA+ P + H+ Y+
Sbjct: 37 PVFENAAFGRLAQASHTCGS--PPEDFCPHVGAAG-AGAHCQRCDAAD--PQRHHNASYL 91
Query: 72 LE---QNNMNWWQSPTLHQGPQY-EYVTITLDM 100
+ Q+ WWQSP++ G QY V ITL +
Sbjct: 92 TDFHSQDESTWWQSPSMAFGVQYPTSVNITLRL 124
>sp|Q90922|NET1_CHICK Netrin-1 OS=Gallus gallus GN=NTN1 PE=1 SV=1
Length = 606
Score = 38.1 bits (87), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 27/94 (28%), Positives = 44/94 (46%), Gaps = 7/94 (7%)
Query: 11 FPPIFNVASKSSIVVNATCGEVGGPEVYCKLKEHRGKADTQCSVCDASSSSPGKKHSIRY 70
P N A + V++TCG+ P YC + E + C +C+A S P + H +
Sbjct: 54 IPDFVNSAFGKEVKVSSTCGKP--PSRYCVVTEKGEEQVRSCHLCNA--SDPKRAHPPSF 109
Query: 71 VLEQN---NMNWWQSPTLHQGPQYEYVTITLDMK 101
+ + N N+ WQS + Q P +T++L K
Sbjct: 110 LTDLNNPHNLTCWQSDSYVQYPHNVTLTLSLGKK 143
>sp|Q1LVF0|LAMC1_DANRE Laminin subunit gamma-1 OS=Danio rerio GN=lamc1 PE=2 SV=2
Length = 1593
Score = 36.2 bits (82), Expect = 0.070, Method: Compositional matrix adjust.
Identities = 28/94 (29%), Positives = 42/94 (44%), Gaps = 9/94 (9%)
Query: 11 FPPIFNVASKSSIVVNATCGEVGGPEVYCKLKEHRGKADTQCSVCDASSSSPGKKHSIRY 70
P N A +++V TCG PE +C G + C +C+A+ P H Y
Sbjct: 35 MPEFVNAAFNATVVATNTCGSP--PEEFCVQTGVTGVTKS-CHICNAAD--PRLHHGAVY 89
Query: 71 VLEQNNM---NWWQSPTLHQGPQY-EYVTITLDM 100
+ + N WWQS T+ G QY + +TL +
Sbjct: 90 LTDYNQPVQPTWWQSQTMLAGIQYPNSINLTLHL 123
>sp|Q4PGM6|RSE1_USTMA Pre-mRNA-splicing factor RSE1 OS=Ustilago maydis (strain 521 / FGSC
9021) GN=RSE1 PE=3 SV=1
Length = 1221
Score = 32.0 bits (71), Expect = 1.5, Method: Composition-based stats.
Identities = 14/38 (36%), Positives = 20/38 (52%)
Query: 66 HSIRYVLEQNNMNWWQSPTLHQGPQYEYVTITLDMKQV 103
H IR+VL +N W +P+L G Q V + +QV
Sbjct: 539 HGIRHVLVDKQINEWATPSLPNGRQTTIVATCTNERQV 576
>sp|Q90923|NET3_CHICK Netrin-3 (Fragment) OS=Gallus gallus GN=NTN3 PE=2 SV=1
Length = 581
Score = 31.6 bits (70), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 19/50 (38%), Positives = 26/50 (52%), Gaps = 5/50 (10%)
Query: 55 CDASSSSPGKKHSIRYVLEQN---NMNWWQSPTLHQGPQYEYVTITLDMK 101
CDAS P + H Y+ + N NM W+S TLH P +T++L K
Sbjct: 66 CDASD--PRRAHPPAYLTDLNTAANMTCWRSETLHHLPHNVTLTLSLGKK 113
>sp|P11046|LAMB1_DROME Laminin subunit beta-1 OS=Drosophila melanogaster GN=LanB1 PE=1
SV=4
Length = 1788
Score = 30.4 bits (67), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 27/101 (26%), Positives = 45/101 (44%), Gaps = 19/101 (18%)
Query: 11 FPPIFN--VASKSSIVVNATCGEVGGPEVYCKLKEHRGKADTQCSVCDASSSS---PGKK 65
+P N + ++ + ++TCG + PE +C L + D +C +CD + P K
Sbjct: 55 YPATGNLLIGRENRLTASSTCG-LHSPERFCILSHLQ---DKKCFLCDTREETKHDPYKN 110
Query: 66 HSIRYVLEQ-----NNMNWWQSPTLHQGPQYEYVTITLDMK 101
H I ++ + N WWQS E TI LD++
Sbjct: 111 HRIGQIIYKTKPGTNIPTWWQSEN-----GKENATIQLDLE 146
>sp|Q4PSU4|AGL61_ARATH Agamous-like MADS-box protein AGL61 OS=Arabidopsis thaliana
GN=AGL61 PE=1 SV=1
Length = 264
Score = 29.3 bits (64), Expect = 9.2, Method: Compositional matrix adjust.
Identities = 27/105 (25%), Positives = 48/105 (45%), Gaps = 19/105 (18%)
Query: 47 KADTQCSVCDASSS----SPGKK-----H-SIRYVLEQ----NNMNWWQSPTLHQGPQYE 92
KA C++C A SP KK H S+ VL++ NNM+ QS L QG
Sbjct: 92 KASELCTLCGAEIGIIVFSPAKKPFSFGHPSVESVLDRYVSRNNMSLAQSQQL-QGSPAA 150
Query: 93 YVTITLDMKQVCPHID--RRPSTIM--CRRYALEQNNMNWWQSPT 133
+ + + + ++ ++ M R+ ++ ++ +NWW+ P
Sbjct: 151 SCELNMQLTHILSEVEEEKKKGQAMEEMRKESVRRSMINWWEKPV 195
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.318 0.132 0.427
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 60,050,404
Number of Sequences: 539616
Number of extensions: 2367942
Number of successful extensions: 4698
Number of sequences better than 100.0: 29
Number of HSP's better than 100.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 16
Number of HSP's that attempted gapping in prelim test: 4641
Number of HSP's gapped (non-prelim): 54
length of query: 150
length of database: 191,569,459
effective HSP length: 107
effective length of query: 43
effective length of database: 133,830,547
effective search space: 5754713521
effective search space used: 5754713521
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 55 (25.8 bits)