Query psy14224
Match_columns 150
No_of_seqs 124 out of 464
Neff 6.0
Searched_HMMs 46136
Date Fri Aug 16 22:34:44 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy14224.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/14224hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 smart00136 LamNT Laminin N-ter 100.0 1.1E-48 2.3E-53 319.0 10.0 133 5-144 2-144 (238)
2 PF00055 Laminin_N: Laminin N- 100.0 3.9E-49 8.4E-54 321.3 5.7 132 10-144 1-142 (237)
3 KOG3512|consensus 100.0 5E-40 1.1E-44 285.8 6.8 130 4-142 41-181 (592)
4 KOG0994|consensus 100.0 1.5E-35 3.3E-40 275.6 7.4 129 6-144 32-178 (1758)
5 KOG1836|consensus 99.9 5.8E-26 1.3E-30 221.4 7.3 137 6-146 38-183 (1705)
6 PF00055 Laminin_N: Laminin N- 96.7 0.0011 2.3E-08 54.5 2.6 50 101-150 38-93 (237)
7 PF00754 F5_F8_type_C: F5/8 ty 96.3 0.0033 7.1E-08 44.1 2.6 61 66-132 15-86 (129)
8 cd00057 FA58C Substituted upda 95.8 0.015 3.3E-07 42.1 4.3 60 65-131 23-94 (143)
9 cd08366 APC10 APC10 subunit of 95.2 0.024 5.1E-07 43.1 3.6 48 65-118 17-76 (139)
10 smart00136 LamNT Laminin N-ter 94.6 0.024 5.1E-07 46.6 2.3 50 99-150 42-95 (238)
11 cd08365 APC10-like1 APC10-like 94.0 0.08 1.7E-06 40.0 4.0 33 65-101 14-47 (131)
12 cd08666 APC10-HECTD3 APC10-lik 93.8 0.094 2E-06 39.8 4.0 50 65-117 18-76 (134)
13 PF03256 APC10: Anaphase-promo 93.7 0.055 1.2E-06 43.2 2.7 51 64-118 43-104 (193)
14 cd08665 APC10-CUL7 APC10-like 93.7 0.083 1.8E-06 39.9 3.5 35 64-101 12-46 (131)
15 cd08667 APC10-ZZEF1 APC10/DOC1 93.2 0.058 1.3E-06 40.7 2.0 48 65-117 13-71 (131)
16 KOG3437|consensus 92.8 0.11 2.4E-06 41.2 3.1 62 65-134 36-107 (184)
17 PF02012 BNR: BNR/Asp-box repe 91.8 0.1 2.3E-06 23.9 1.1 12 117-128 1-12 (12)
18 COG5156 DOC1 Anaphase-promotin 90.8 0.11 2.3E-06 40.8 1.0 39 63-107 38-76 (189)
19 cd08159 APC10-like APC10-like 89.7 0.48 1E-05 35.7 3.7 18 67-84 15-32 (129)
20 cd08664 APC10-HERC2 APC10-like 86.5 0.88 1.9E-05 35.2 3.4 34 64-101 36-69 (152)
21 KOG1836|consensus 84.2 0.85 1.8E-05 46.9 3.0 102 8-150 22-130 (1705)
22 PF06219 DUF1005: Protein of u 40.6 18 0.00039 32.6 1.8 24 109-133 280-303 (460)
23 smart00231 FA58C Coagulation f 28.3 47 0.001 24.0 2.1 37 94-130 45-89 (139)
24 PF01834 XRCC1_N: XRCC1 N term 27.3 44 0.00095 25.9 1.8 38 64-106 17-55 (153)
25 cd02847 Chitobiase_C_term Chit 20.7 1.1E+02 0.0024 20.8 2.7 26 106-132 26-51 (78)
No 1
>smart00136 LamNT Laminin N-terminal domain (domain VI). N-terminal domain of laminins and laminin-related protein such as Unc-6/ netrins.
Probab=100.00 E-value=1.1e-48 Score=318.99 Aligned_cols=133 Identities=31% Similarity=0.561 Sum_probs=120.9
Q ss_pred CCCCCCCCCcccccCCCceeeecccCCCCCCeeeeEeccCCCCCCCccccccCCCCCCCCCCCccceeccC---CCceec
Q psy14224 5 LKVPGLFPPIFNVASKSSIVVNATCGEVGGPEVYCKLKEHRGKADTQCSVCDASSSSPGKKHSIRYVLEQN---NMNWWQ 81 (150)
Q Consensus 5 ~~~~~C~P~~~NlA~gr~i~assTCG~~~~~e~yC~~~~~~~~~~~~C~~Cda~~~~~~~~Hp~~~ltD~~---~~TwWQ 81 (150)
-++++|+|+|+|||+||+|.|+||||++ +||+||.++... ....+|++||++ +|.++||+++|+|.+ +.||||
T Consensus 2 ~~~~~C~P~~~nla~g~~v~assTCG~~-~pe~yC~~~~~~-~~~~~C~~CDa~--~p~~~Hp~~~l~D~~~~~~~TwWQ 77 (238)
T smart00136 2 GRPRSCYPPFVNLAFGREVTATSTCGEP-GPERYCKLVGHT-EQGKKCDYCDAR--NPRRSHPAENLTDGNNPNNPTWWQ 77 (238)
T ss_pred CCCccccCchhhhhcCCeeeEecCCCCC-CCcceeEecccc-CcCCcCCCCCCC--CccccCCHHHhhccCCCCCCceec
Confidence 3689999999999999999999999997 899999986332 235899999999 899999999999998 479999
Q ss_pred CCcCCCCCCCcceEEEeccCceeec-------cCCCCCCeeeeEeecCCCCcccccccccccCCCCCcee
Q psy14224 82 SPTLHQGPQYEYVTITLDMKQVCPH-------IDRRPSTIMCRRYALEQNNMNWWQSPTLHQGPQYEYVT 144 (150)
Q Consensus 82 S~~~~~g~~~~~VtItLdL~~~f~~-------~sprP~s~~iers~d~G~tw~pwQ~~s~~~~~~y~~v~ 144 (150)
|+++.+|+ ++|||||||||.||| ++|||++|+|||| |+|++|+||||||.+|.+.|+..+
T Consensus 78 S~~~~~~~--~~VtitLdL~k~fevtyi~l~F~s~RPa~~i~erS-d~G~tW~p~qyfa~dC~~~f~~~~ 144 (238)
T smart00136 78 SEPLSNGP--QNVNLTLDLGKEFHVTYVILKFCSPRPSLWILERS-DFGKTWQPWQYFSSDCRRTFGRPP 144 (238)
T ss_pred CCCcCCCC--ccEEEEEecCCEEEEEEEEEEecCCCCceEEEeec-CCCCCCcEeeeeecchhhhcCCCC
Confidence 99999888 589999999999996 8999999999997 999999999999999999997654
No 2
>PF00055 Laminin_N: Laminin N-terminal (Domain VI); InterPro: IPR008211 Laminin is a large molecular weight glycoprotein present only in basement membranes in almost every animal tissue. Laminin is thought to mediate the attachment, migration and organisation of cells into tissues during embryonic development by interacting with other extracellular matrix components []. Each laminin is a heterotrimer assembled from alpha, beta and gamma chain subunits, secreted and incorporated into cell-associated extracellular matrices []. Basement membrane assembly is a cooperative process in which laminins polymerise through their N-terminal domain (LN or domain VI) and anchor to the cell surface through their G domains. Netrins may also associate with this network through heterotypic LN domain interactions []. This leads to cell signalling through integrins and dystroglycan (and possibly other receptors) recruited to the adherent laminin. This LN domain dependent self-assembly is considered to be crucial for the integrity of basement membranes, as highlighted by genetic forms of muscular dystrophy containing the deletion of the LN module from the alpha 2 laminin chain []. The laminin N-terminal domain is found in all laminin and netrin subunits except laminin alpha 3A, alpha 4 and gamma 2. ; PDB: 3TBD_A 3ZYG_B 3ZYI_B 3ZYJ_D 2Y38_A.
Probab=100.00 E-value=3.9e-49 Score=321.28 Aligned_cols=132 Identities=35% Similarity=0.644 Sum_probs=94.0
Q ss_pred CCCCcccccCCCceeeecccCCCCCCeeeeEeccCCCCCCCccccccCCCCCCCCCCCccceeccCC---CceecCCcCC
Q psy14224 10 LFPPIFNVASKSSIVVNATCGEVGGPEVYCKLKEHRGKADTQCSVCDASSSSPGKKHSIRYVLEQNN---MNWWQSPTLH 86 (150)
Q Consensus 10 C~P~~~NlA~gr~i~assTCG~~~~~e~yC~~~~~~~~~~~~C~~Cda~~~~~~~~Hp~~~ltD~~~---~TwWQS~~~~ 86 (150)
|+|+|+|||+||.|.|+||||++ +||+||++.+..+ ...+|.+||++++.+.++||+++|+|.++ .|||||+++.
T Consensus 1 C~P~~~nla~gr~v~assTCG~~-~pe~yC~~~~~~~-~~~~C~~Cda~~~~~~~~Hp~~~~~D~~~~~~~TwWQS~~~~ 78 (237)
T PF00055_consen 1 CYPPFGNLAFGREVTASSTCGEP-GPERYCRLSGSQG-RQRQCFICDASDPDPRRSHPPSYLTDSHNPNNSTWWQSETLQ 78 (237)
T ss_dssp -----EETTTT-EEECCCBS-SS---EEE--SSSTTT----E-EEE-TTSTSTTT---GGGGCSSSCTTB---EEB--ST
T ss_pred CCCCcchhhcCCEeEEEcCCCCC-CCccceeccCccc-cCcccccCCCcccccccccChhhcccccccccCceecCCccC
Confidence 99999999999999999999998 9999999987654 35799999999554559999999999983 7999999999
Q ss_pred CCCCCcceEEEeccCceeec-------cCCCCCCeeeeEeecCCCCcccccccccccCCCCCcee
Q psy14224 87 QGPQYEYVTITLDMKQVCPH-------IDRRPSTIMCRRYALEQNNMNWWQSPTLHQGPQYEYVT 144 (150)
Q Consensus 87 ~g~~~~~VtItLdL~~~f~~-------~sprP~s~~iers~d~G~tw~pwQ~~s~~~~~~y~~v~ 144 (150)
.|.++++|||||||++.|+| +||||++|+||||+|+| +|+||||||.+|.+.|+.++
T Consensus 79 ~g~~~~~VtitLdL~~~f~v~~v~l~F~spRP~~miierS~D~g-tW~p~qYfA~~C~~~f~~~~ 142 (237)
T PF00055_consen 79 NGVQYENVTITLDLGKEFEVTYVILQFCSPRPAAMIIERSSDFG-TWQPWQYFASDCSRTFGMPP 142 (237)
T ss_dssp TTTSTT-EEEEEEEEEEEEEEEEEEEESS---SEEEEEEESSTT-SEEEEEEEESSHHHHCS--B
T ss_pred CCCcCcceEEEEcccceEEEEEEEEEEcCCCCCeEEEEEccCCC-ceeEeHHhhcCChhhcCCcc
Confidence 99999999999999999996 89999999999999999 99999999999999987654
No 3
>KOG3512|consensus
Probab=100.00 E-value=5e-40 Score=285.77 Aligned_cols=130 Identities=24% Similarity=0.349 Sum_probs=120.4
Q ss_pred CCCCCCCCCCcccccCCCceeeecccCCCCCCeeeeEeccCCCCCCCccc-cccCCCCCCCCCCCccceeccC---CCce
Q psy14224 4 ELKVPGLFPPIFNVASKSSIVVNATCGEVGGPEVYCKLKEHRGKADTQCS-VCDASSSSPGKKHSIRYVLEQN---NMNW 79 (150)
Q Consensus 4 ~~~~~~C~P~~~NlA~gr~i~assTCG~~~~~e~yC~~~~~~~~~~~~C~-~Cda~~~~~~~~Hp~~~ltD~~---~~Tw 79 (150)
.-++++|+|+|+|+|+|++|.|++|||. +||+||.+.+. ..|. .|||+ +|+++|||+.|||.+ +.|+
T Consensus 41 ~g~p~~C~P~~vnaa~g~~V~as~TCGd--rPe~~c~~~~~-----~~~~~eCdAs--~p~~AHpPalltD~n~~~n~Tc 111 (592)
T KOG3512|consen 41 TGEPRACQPEFVNAAFGKKVPASSTCGD--RPETFCSVENP-----YLCSNECDAS--NPDLAHPPALLTDLNGPGNATC 111 (592)
T ss_pred CCCeeecChhhhhhhhCCccCCccccCC--CccceeeecCC-----CcccccccCC--CccccCChHHhcCCCCCCCcce
Confidence 3578999999999999999999999994 89999999765 5565 89999 899999999999998 8999
Q ss_pred ecCCcCCCCCCCcceEEEeccCceeec-------cCCCCCCeeeeEeecCCCCcccccccccccCCCCCc
Q psy14224 80 WQSPTLHQGPQYEYVTITLDMKQVCPH-------IDRRPSTIMCRRYALEQNNMNWWQSPTLHQGPQYEY 142 (150)
Q Consensus 80 WQS~~~~~g~~~~~VtItLdL~~~f~~-------~sprP~s~~iers~d~G~tw~pwQ~~s~~~~~~y~~ 142 (150)
|||+++...+...+|||||+|||.||+ +|+||++|+||||+|+|+||+||||||++|.+.|++
T Consensus 112 WqS~tw~~~~~PlnVtlTLSlgKkfELT~Vsl~FcS~rPdsmaL~KS~D~GrTWqPfQFYss~C~~~fgr 181 (592)
T KOG3512|consen 112 WQSETWSRYPSPLNVTLTLSLGKKFELTYVSLTFCSGRPDSMALEKSLDYGRTWQPFQFYSSDCRKAFGR 181 (592)
T ss_pred eeccccCCCCCCceEEEEEecCcEEEEEEEEEEEecCCCceeeeeeccccCCcccccchhHHHHHHHhCC
Confidence 999998877777799999999999994 999999999999999999999999999999999976
No 4
>KOG0994|consensus
Probab=100.00 E-value=1.5e-35 Score=275.60 Aligned_cols=129 Identities=25% Similarity=0.421 Sum_probs=116.3
Q ss_pred CCCCCCCCcccccCCC--ceeeecccCCCCCCeeeeEeccCCCCCCCccccccCCCCCCCCCCC-ccceecc----C---
Q psy14224 6 KVPGLFPPIFNVASKS--SIVVNATCGEVGGPEVYCKLKEHRGKADTQCSVCDASSSSPGKKHS-IRYVLEQ----N--- 75 (150)
Q Consensus 6 ~~~~C~P~~~NlA~gr--~i~assTCG~~~~~e~yC~~~~~~~~~~~~C~~Cda~~~~~~~~Hp-~~~ltD~----~--- 75 (150)
..++|+|.++||+.|| ++.|+||||++ +||+||.+++... +++|++||++ .|.+.|+ |+++++. .
T Consensus 32 ~~~sCyP~tGnLliGR~~~L~AsSTCGl~-~pe~yCi~Shlqd--q~KCf~Cdsr--~p~~~~~~pshrienVvss~~p~ 106 (1758)
T KOG0994|consen 32 SRGSCYPATGNLLIGRARKLTASSTCGLN-KPERYCIVSHLQD--QKKCFKCDSR--YPHKAHLNPSHRIENVVSSFAPP 106 (1758)
T ss_pred ccCCcCCCccceeecchhheeecccccCC-CCcceEEeecccc--ccccccccCC--CccccCCChhhhhhhhhhccCCC
Confidence 3578999999999999 99999999999 9999999998754 4899999999 7877777 6777763 2
Q ss_pred -CCceecCCcCCCCCCCcceEEEeccCceeec-------cCCCCCCeeeeEeecCCCCcccccccccccCCCCCcee
Q psy14224 76 -NMNWWQSPTLHQGPQYEYVTITLDMKQVCPH-------IDRRPSTIMCRRYALEQNNMNWWQSPTLHQGPQYEYVT 144 (150)
Q Consensus 76 -~~TwWQS~~~~~g~~~~~VtItLdL~~~f~~-------~sprP~s~~iers~d~G~tw~pwQ~~s~~~~~~y~~v~ 144 (150)
+.|||||++ |. ++|+|+|||+.+|+| .++||++|+||||+|||+||.+|+|||.+|...|+.|.
T Consensus 107 r~~~WWQSen---gv--~~vtIQLDLEAEFhFTHLImtFktfRPAAMliERS~DFGkTW~vYrYFAyDC~asFPGv~ 178 (1758)
T KOG0994|consen 107 RNITWWQSEN---GV--ENVTIQLDLEAEFHFTHLIMTFKTFRPAAMLIERSSDFGKTWHVYRYFAYDCSATFPGVP 178 (1758)
T ss_pred cccchhhccc---CC--CcceEEeehhhheeeeeeeEeeccCCcceeeeeecccccccceeeeeeecccccCCCCCC
Confidence 568999999 66 899999999999995 89999999999999999999999999999999998764
No 5
>KOG1836|consensus
Probab=99.92 E-value=5.8e-26 Score=221.37 Aligned_cols=137 Identities=23% Similarity=0.344 Sum_probs=125.3
Q ss_pred CCCCCCCCcccccCCCceeeecccCCCCCCeeeeEeccCCCCCCCccccccCCCCCCCCCCCccceeccC-CCceecCCc
Q psy14224 6 KVPGLFPPIFNVASKSSIVVNATCGEVGGPEVYCKLKEHRGKADTQCSVCDASSSSPGKKHSIRYVLEQN-NMNWWQSPT 84 (150)
Q Consensus 6 ~~~~C~P~~~NlA~gr~i~assTCG~~~~~e~yC~~~~~~~~~~~~C~~Cda~~~~~~~~Hp~~~ltD~~-~~TwWQS~~ 84 (150)
.+++|.|+|.|+|+...+.++.|||+. ++ .||...+..+.++..|.+|++. ++...||+++|+|++ ..|||||++
T Consensus 38 r~q~~~pe~~~aa~~~~~~~~~~cg~~-~~-~~c~~~~~~g~~~~~C~~C~~a--g~~~~h~~~~~id~~~~~twwQS~~ 113 (1705)
T KOG1836|consen 38 RQQASCPEFANAAGNLLATETNTCGLK-GG-GYCVPCNCNGHSNGYCVICNAA--GEHCEHPASNLIDGAVGETWWQSPP 113 (1705)
T ss_pred cccccccccccccCCcceeEeccccCC-CC-CcCcccCCcCCCCCcceeCCCC--CcccccCHhhhccCCcCCccccCCC
Confidence 468999999999999999999999996 55 9999998777655689999997 889999999999997 699999999
Q ss_pred CCCCCCCcceEEEeccCceeec--------cCCCCCCeeeeEeecCCCCcccccccccccCCCCCceeEE
Q psy14224 85 LHQGPQYEYVTITLDMKQVCPH--------IDRRPSTIMCRRYALEQNNMNWWQSPTLHQGPQYEYVTIT 146 (150)
Q Consensus 85 ~~~g~~~~~VtItLdL~~~f~~--------~sprP~s~~iers~d~G~tw~pwQ~~s~~~~~~y~~v~it 146 (150)
+..|.||+.|+++++|+++|++ ++|||++|+|||+++.+.+|.|||||+.+|..+|.+.++.
T Consensus 114 l~~g~q~~~~~~~~~~~g~~~~i~~~~~~~~sprp~s~~l~k~~~~~g~~~p~q~~s~s~~~~~~~~~~~ 183 (1705)
T KOG1836|consen 114 LPEGHQYNFVTNLTDLLGKFRIITVVRKKANSPRPESFGLYKSTDEDGPWCPWQFCSGSCRDCLSRPDRQ 183 (1705)
T ss_pred CCcccccchhhhhhhcCCeEEEEEeeeeccCCCCCccceeecccccCCCcCCceeecccCccccccCCcc
Confidence 9999999999999999999985 6999999999999997778999999999999999877653
No 6
>PF00055 Laminin_N: Laminin N-terminal (Domain VI); InterPro: IPR008211 Laminin is a large molecular weight glycoprotein present only in basement membranes in almost every animal tissue. Laminin is thought to mediate the attachment, migration and organisation of cells into tissues during embryonic development by interacting with other extracellular matrix components []. Each laminin is a heterotrimer assembled from alpha, beta and gamma chain subunits, secreted and incorporated into cell-associated extracellular matrices []. Basement membrane assembly is a cooperative process in which laminins polymerise through their N-terminal domain (LN or domain VI) and anchor to the cell surface through their G domains. Netrins may also associate with this network through heterotypic LN domain interactions []. This leads to cell signalling through integrins and dystroglycan (and possibly other receptors) recruited to the adherent laminin. This LN domain dependent self-assembly is considered to be crucial for the integrity of basement membranes, as highlighted by genetic forms of muscular dystrophy containing the deletion of the LN module from the alpha 2 laminin chain []. The laminin N-terminal domain is found in all laminin and netrin subunits except laminin alpha 3A, alpha 4 and gamma 2. ; PDB: 3TBD_A 3ZYG_B 3ZYI_B 3ZYJ_D 2Y38_A.
Probab=96.73 E-value=0.0011 Score=54.47 Aligned_cols=50 Identities=42% Similarity=0.690 Sum_probs=26.7
Q ss_pred CceeeccCCC---CCCeeeeEeecCCCC---cccccccccccCCCCCceeEEEeCC
Q psy14224 101 KQVCPHIDRR---PSTIMCRRYALEQNN---MNWWQSPTLHQGPQYEYVTITLDMK 150 (150)
Q Consensus 101 ~~~f~~~spr---P~s~~iers~d~G~t---w~pwQ~~s~~~~~~y~~v~itl~~~ 150 (150)
.+.|.+|..+ |...+.-..+.|+.. .+|||+.+...|.+|+.|||||||+
T Consensus 38 ~~~C~~Cda~~~~~~~~Hp~~~~~D~~~~~~~TwWQS~~~~~g~~~~~VtitLdL~ 93 (237)
T PF00055_consen 38 QRQCFICDASDPDPRRSHPPSYLTDSHNPNNSTWWQSETLQNGVQYENVTITLDLG 93 (237)
T ss_dssp --E-EEE-TTSTSTTT---GGGGCSSSCTTB---EEB--STTTTSTT-EEEEEEEE
T ss_pred CcccccCCCcccccccccChhhcccccccccCceecCCccCCCCcCcceEEEEccc
Confidence 3456765433 334444444555443 7999999999999999999999995
No 7
>PF00754 F5_F8_type_C: F5/8 type C domain; InterPro: IPR000421 Blood coagulation factors V and VIII contain a C-terminal, twice repeated, domain of about 150 amino acids, which is called F5/8 type C, FA58C, or C1/C2- like domain. In the Dictyostelium discoideum (Slime mold) cell adhesion protein discoidin, a related domain, named discoidin I-like domain, DLD, or DS, has been found which shares a common C-terminal region of about 110 amino acids with the FA58C domain, but whose N-terminal 40 amino acids are much less conserved. Similar domains have been detected in other extracellular and membrane proteins [, , ] In coagulation factors V and VIII the repeated domains compose part of a larger functional domain which promotes binding to anionic phospholipids on the surface of platelets and endothelial cells []. The C-terminal domain of the second FA58C repeat (C2) of coagulation factor VIII has been shown to be responsible for phosphatidylserine-binding and essential for activity [, ]. It forms an amphipathic alpha-helix, which binds to the membrane []. FA58C contains two conserved cysteines in most proteins, which link the extremities of the domain by a disulphide bond [, , ]. A further disulphide bond is located near the C-terminal of the second FA58C domain in MFGM Q08431 from SWISSPROT []. +------------------------------------------------------------------------+ | +-+ | | | | | CxPLGxxQITASxxxxxRLxxxWxxxxWxxxxxxQGxxxxxxxxxxxxGNxxxxxxxxxxRxPxcxcLRxExGC 'C': conserved cysteine involved in a disulphide bond. 'c': cysteine involved in a disulphide bond in MFGM Q08431 from SWISSPROT. 'x': any amino acid. upper case letters: conserved residues. ; GO: 0007155 cell adhesion; PDB: 2J22_A 3CQO_C 1SDD_B 2VCA_A 2VC9_A 2VCC_A 2VCB_A 2J1E_A 2J7M_A 2J1A_A ....
Probab=96.28 E-value=0.0033 Score=44.06 Aligned_cols=61 Identities=13% Similarity=0.090 Sum_probs=47.0
Q ss_pred CCccceeccCCCceecCCcCCCCCCCcceEEEeccCceeec----------cCC-CCCCeeeeEeecCCCCccccccc
Q psy14224 66 HSIRYVLEQNNMNWWQSPTLHQGPQYEYVTITLDMKQVCPH----------IDR-RPSTIMCRRYALEQNNMNWWQSP 132 (150)
Q Consensus 66 Hp~~~ltD~~~~TwWQS~~~~~g~~~~~VtItLdL~~~f~~----------~sp-rP~s~~iers~d~G~tw~pwQ~~ 132 (150)
+++++++|++..|+|.+.. +. ....|+|||++.+.| ... +|..+.|+-| +||.+|......
T Consensus 15 ~~~~~~~Dg~~~t~W~~~~---~~--~~~~i~idl~~~~~i~~i~i~~~~~~~~~~~~~~~i~~s-~dg~~w~~~~~~ 86 (129)
T PF00754_consen 15 EPASNAFDGDPSTAWCSNW---DD--SPQWIQIDLGKPYTISGISIQFRNDGNNGRPKSFKIEYS-NDGSNWTTVASQ 86 (129)
T ss_dssp GGGGGGGSSSTTSSEEESS---SS--STEEEEEEEEEEEEEEEEEEEEESSTTTEEEEEEEEEEE-SSSSSEEEEEET
T ss_pred chHHheEeCCCCCEEECCC---CC--CCceEEEEeeeeEecceeeecccccccceeeeeeeeeee-cccccccccccc
Confidence 4799999998889999974 11 357788899999886 122 8899999985 667788877653
No 8
>cd00057 FA58C Substituted updates: Jan 31, 2002
Probab=95.79 E-value=0.015 Score=42.08 Aligned_cols=60 Identities=8% Similarity=0.081 Sum_probs=44.8
Q ss_pred CCCccceeccCCCceecCCcCCCCCCCcceEEEeccCceeecc------------CCCCCCeeeeEeecCCCCcccccc
Q psy14224 65 KHSIRYVLEQNNMNWWQSPTLHQGPQYEYVTITLDMKQVCPHI------------DRRPSTIMCRRYALEQNNMNWWQS 131 (150)
Q Consensus 65 ~Hp~~~ltD~~~~TwWQS~~~~~g~~~~~VtItLdL~~~f~~~------------sprP~s~~iers~d~G~tw~pwQ~ 131 (150)
.+.++++ |++..|.|.+... . ...-|+|||++.+.|. +.++..+.|+- ++||.+|+.+.-
T Consensus 23 ~~~~~~~-dg~~~t~W~~~~~---~--~~~wi~vDL~~~~~i~~v~i~~~~~~~~~~~~~~~~i~~-s~dg~~W~~~~~ 94 (143)
T cd00057 23 GWEASRA-RLNSDNAWTPAVN---D--PPQWLQVDLGKTRRVTGIQTQGRKGGGSSEWVTSYKVQY-SLDGETWTTYKD 94 (143)
T ss_pred CCCcCee-ecCCCCcccCCCC---C--CCceEEEECCCCEEEEEEEEccCCCCCccCeeEEEEEEE-ECCCCCEeEEEc
Confidence 4778888 9987899998752 1 2456888999998861 34577888887 466988998763
No 9
>cd08366 APC10 APC10 subunit of the anaphase-promoting complex (APC) that mediates substrate ubiquitination. This model represents the single domain protein APC10, a subunit of the anaphase-promoting complex (APC), which is a multi-subunit E3 ubiquitin ligase. E3 ubiquitin ligases mediate substrate ubiquitination (or ubiquitylation), a vital component of the ubiquitin-26S proteasome pathway for selective proteolytic degradation. The APC (also known as the cyclosome), is a cell cycle-regulated E3 ubiquitin ligase that controls important transitions in mitosis and the G1 phase by ubiquitinating regulatory proteins, thereby targeting them for degradation. In mitosis, the APC initiates sister chromatid separation by ubiquitinating the anaphase inhibitor securin and triggers exit from mitosis by ubiquitinating cyclin B. The C-terminus of APC10 binds to CDC27/APC3, an APC subunit that contains multiple tetratrico peptide repeats. APC10 domains are homologous to the DOC1 domains present in the
Probab=95.22 E-value=0.024 Score=43.10 Aligned_cols=48 Identities=23% Similarity=0.381 Sum_probs=34.6
Q ss_pred CCCccceeccCCCceecCCcCCCCCCCcceEEEeccCceeec------------cCCCCCCeeeeE
Q psy14224 65 KHSIRYVLEQNNMNWWQSPTLHQGPQYEYVTITLDMKQVCPH------------IDRRPSTIMCRR 118 (150)
Q Consensus 65 ~Hp~~~ltD~~~~TwWQS~~~~~g~~~~~VtItLdL~~~f~~------------~sprP~s~~ier 118 (150)
-+++..|+|.+..|+|||. |.+.+.++|.++ +.-.| .|..|..+.|.=
T Consensus 17 g~gv~~L~D~~~~TyWQSD----g~qPH~I~i~f~--k~~~i~~l~i~vd~~~DeSYtP~~I~v~~ 76 (139)
T cd08366 17 GNGVDQLRDDSLDTYWQSD----GPQPHLINIQFS--KKTDISAVALYLDYKLDESYTPSKISIRA 76 (139)
T ss_pred CCCHHHhcCCCCCccCCCC----CCCCEEEEEEec--CCcEEEEEEEEEccCCCCCCCCEEEEEEE
Confidence 5789999999999999996 566567777665 33332 467777777554
No 10
>smart00136 LamNT Laminin N-terminal domain (domain VI). N-terminal domain of laminins and laminin-related protein such as Unc-6/ netrins.
Probab=94.57 E-value=0.024 Score=46.65 Aligned_cols=50 Identities=36% Similarity=0.624 Sum_probs=33.0
Q ss_pred ccCceeeccCCC-CCCeeeeEeecCCCC---cccccccccccCCCCCceeEEEeCC
Q psy14224 99 DMKQVCPHIDRR-PSTIMCRRYALEQNN---MNWWQSPTLHQGPQYEYVTITLDMK 150 (150)
Q Consensus 99 dL~~~f~~~spr-P~s~~iers~d~G~t---w~pwQ~~s~~~~~~y~~v~itl~~~ 150 (150)
.-.+.|++|+.+ |..-+.-..+.|+.. =+|||+-+...+.. +|||||||+
T Consensus 42 ~~~~~C~~CDa~~p~~~Hp~~~l~D~~~~~~~TwWQS~~~~~~~~--~VtitLdL~ 95 (238)
T smart00136 42 EQGKKCDYCDARNPRRSHPAENLTDGNNPNNPTWWQSEPLSNGPQ--NVNLTLDLG 95 (238)
T ss_pred CcCCcCCCCCCCCccccCCHHHhhccCCCCCCceecCCCcCCCCc--cEEEEEecC
Confidence 345778887644 433333333444442 48999999887765 699999996
No 11
>cd08365 APC10-like1 APC10-like DOC1 domains of E3 ubiquitin ligases that mediate substrate ubiquitination. This model represens the APC10-like DOC1 domain of multi-domain proteins present in E3 ubiquitin ligases. E3 ubiquitin ligases mediate substrate ubiquitination (or ubiquitylation), a component of the ubiquitin-26S proteasome pathway for selective proteolytic degradation. APC10/DOC1 domains such as those present in HECT (Homologous to the E6-AP Carboxyl Terminus) and Cullin-RING (Really Interesting New Gene) E3 ubiquitin ligase proteins, HECTD3, and CUL7, respectively, are also included here. CUL7 is a member of the Cullin-RING ligase family and functions as a molecular scaffold assembling a SCF-ROC1-like E3 ubiquitin ligase complex consisting of Skp1, CUL7, Fbx29 F-box protein, and ROC1 (RING-box protein 1) and promotes ubiquitination. CUL7 is a multi-domain protein with a C-terminal cullin domain that binds ROC1 and a centrally positioned APC10/DOC1 domain. HECTD3 contains a C-te
Probab=94.03 E-value=0.08 Score=39.98 Aligned_cols=33 Identities=18% Similarity=0.444 Sum_probs=23.6
Q ss_pred CCCccceeccCCCceecCCcCCCCCC-CcceEEEeccC
Q psy14224 65 KHSIRYVLEQNNMNWWQSPTLHQGPQ-YEYVTITLDMK 101 (150)
Q Consensus 65 ~Hp~~~ltD~~~~TwWQS~~~~~g~~-~~~VtItLdL~ 101 (150)
.|.++.|+|++..|+|||. |.| .+.++|.+.-+
T Consensus 14 k~gv~~L~D~~~~tyWQSD----G~q~pH~I~i~f~k~ 47 (131)
T cd08365 14 PADASRLTDGNTSTYWQSD----GSQGSHWIRLKMKPD 47 (131)
T ss_pred chhHHHhhcCCCCceEccC----CCCCCEEEEEEEcCC
Confidence 4589999999989999999 344 25555544433
No 12
>cd08666 APC10-HECTD3 APC10-like DOC1 domain of HECTD3, a HECT E3 ubiquitin ligase protein that mediates substrate ubiquitination. This model represents the APC10/DOC1 domain present in HECTD3, a HECT (Homologous to the E6-AP Carboxyl Terminus) E3 ubiquitin ligase protein. HECT E3 ubiquitin ligases mediate substrate ubiquitination (or ubiquitylation), and are a component of the ubiquitin-26S proteasome pathway for selective proteolytic degradation. They also regulate the trafficking of many receptors, channels, transporters and viral proteins. HECTD3 (HECT domain-containing protein3) contains a C-terminal HECT domain with the active site for ubiquitin transfer onto substrates, and an N-terminal APC10/DOC1 domain, which is responsible for substrate recognition and binding. HECTD3 specifically recognizes the Trio-binding protein, Tara (Trio-associated repeat on actin), implicated in regulating actin cytoskeletal, cell motility and cell growth. Tara also binds to TRF1 and may participate i
Probab=93.84 E-value=0.094 Score=39.80 Aligned_cols=50 Identities=10% Similarity=0.333 Sum_probs=33.5
Q ss_pred CCCccceeccCCCceecCCcCCCCCCCcceEEEeccCceeec---------cCCCCCCeeee
Q psy14224 65 KHSIRYVLEQNNMNWWQSPTLHQGPQYEYVTITLDMKQVCPH---------IDRRPSTIMCR 117 (150)
Q Consensus 65 ~Hp~~~ltD~~~~TwWQS~~~~~g~~~~~VtItLdL~~~f~~---------~sprP~s~~ie 117 (150)
-+.+..|+|++..|+|||.. .+|+ +.++|.+.-+...+. .|..|..+.|.
T Consensus 18 g~gv~~L~D~~~~tyWQSdG-~qgp--H~I~l~f~~~v~i~~l~i~v~~~DeSYtP~~I~V~ 76 (134)
T cd08666 18 DFNVSCLTDGDPDTYWESDG-SQGQ--HWIRLHMKKGTIIKKLLLTVDATDDNYMPKRVAVY 76 (134)
T ss_pred CCCHHHhccCCCCccEecCC-CCCC--eEEEEEECCCcEeeEEEEEecCCCCCcCCcEEEEE
Confidence 36899999999999999983 2333 677776655433321 46667666654
No 13
>PF03256 APC10: Anaphase-promoting complex, subunit 10 (APC10); InterPro: IPR004939 The anaphase-promoting complex (APC) or cyclosome is a multi-subunit E3 protein ubiquitin ligase that regulates important events in mitosis such as the initiation of anaphase and exit from telophase. The APC, in conjunction with other enzymes, assembles multi-ubiquitin chains on a variety of regulatory proteins, thereby targeting them for proteolysis by the 26S proteasome. Anaphase is initiated when the APC triggers the destruction of securin, thereby allowing the protease, separase, to disrupt sister-chromatid cohesion. Securin ubiquitination by the APC is inhibited by cyclin-dependent kinase 1 (Cdk1)-dependent phosphorylation []. Forkhead Box M1 (FoxM1), which is a transcription factor that is over-expressed in many cancers, is degraded in late mitosis and early G1 phase by the APC/cyclosome (APC/C) E3 ubiquitin ligase []. The APC/C targets mitotic cyclins for destruction in mitosis and G1 phase and is then inactivated at S phase. It thereby generates alternating states of high and low cyclin-Cdk activity, which is required for the alternation of mitosis and DNA replication []. The APC/C is composed of at least 13 subunits that stay tightly associated throughout the cell cycle: APC1, APC2, APC4, APC5, APC9, APC11, CDC16, CDC23, CDC26, CDC27, DOC1, MND2 and SWM1[], []. In fission yeast the 13 subunits are known as: Apc1, Apc2, Nuc2, Apc4, Apc5, Cut9, Apc8, Apc10, Apc11, Hcn1, Apc13, Apc14 and Apc15 []. One of the subunits of the APC that is required for ubiquitination activity is APC10, a one-domain protein homologous to a sequence element, termed the DOC domain, found in several hypothetical proteins that may also mediate ubiquitination reactions, because they contain combinations of either RING finger (see PDOC00449 from PROSITEDOC), cullin (see PDOC00967 from PROSITEDOC) or HECT (see PDOC50237 from PROSITEDOC) domains [, , ]. The DOC domain consists of a beta-sandwich, in which a five-stranded antiparallel beta-sheet is packed on top of a three stranded antiparallel beta-sheet, exhibiting a 'jellyroll' fold [, ]. Proteins known to contain a DOC domain include: Eucaryotic Doc1/Apc10. Mammalian protein associated with the transcription factor Myc (PAM). Mouse runty-jerky-sterile (RJS) protein. Human HERC2, the ortholog of RJS. ; PDB: 1GQP_B 1JHJ_A.
Probab=93.71 E-value=0.055 Score=43.21 Aligned_cols=51 Identities=22% Similarity=0.397 Sum_probs=28.7
Q ss_pred CCCCcc-ceeccCCCceecCCcCCCCCCCcceEEEeccCceee-----c-----cCCCCCCeeeeE
Q psy14224 64 KKHSIR-YVLEQNNMNWWQSPTLHQGPQYEYVTITLDMKQVCP-----H-----IDRRPSTIMCRR 118 (150)
Q Consensus 64 ~~Hp~~-~ltD~~~~TwWQS~~~~~g~~~~~VtItLdL~~~f~-----~-----~sprP~s~~ier 118 (150)
..|++. .|+|.+..|+|||. |.+.+.++|++.=+.... + .|..|..++|.-
T Consensus 43 ~g~gv~~~LrD~~~~TyWQSD----G~qpH~I~i~f~k~v~I~~l~iyvd~~~DeSYtPs~I~V~a 104 (193)
T PF03256_consen 43 PGFGVAELLRDGSTETYWQSD----GSQPHWITIQFHKRVIISSLSIYVDYKQDESYTPSKISVRA 104 (193)
T ss_dssp TTBSCHGHCHSS-TT--EE------SSSSEEEEEEEEEEEEE-EEEEEEEHHHHGGGSEEEEEEEE
T ss_pred CCCCchheeeCCChhHhhccC----CCCCEEEEEEEcCCcEEEEEEEEEccCcCCCCCceEEEEEE
Confidence 357888 77799999999996 565566666544332221 1 467777777654
No 14
>cd08665 APC10-CUL7 APC10-like DOC1 domain of CUL7, subunit of the SCF-ROC1-like E3 ubiquitin ligase complex that mediates substrate ubiquitination. This model represents the APC10/DOC1 domain present in CUL7, a subunit of the SCF-ROC1-like E3 Ubiquitin (Ub) ligase complex, which mediates substrate ubiquitination (or ubiquitylation), and is a component of the ubiquitin-26S proteasome pathway for selective proteolytic degradation. CUL7 is a member of the Cullin-RING ligase family and functions as a molecular scaffold assembling the SCF-ROC1-like E3 Ub ligase complex consisting of the adapter protein Skp1, CUL7, the WD40 repeat-containing F-box Fbw8 (also known as Fbx29), and ROC1 (RING-box protein 1). CUL7 is a large protein with a C-terminal cullin domain that binds ROC1 and additional domains, including an APC10/DOC1 domain. While the Fbw8 protein is responsible for substrate protein recognition, the ROC1 RING domain recruits an Ub-charged E2 Ub-conjugating enzyme for substrate ubiqui
Probab=93.66 E-value=0.083 Score=39.91 Aligned_cols=35 Identities=20% Similarity=0.442 Sum_probs=26.0
Q ss_pred CCCCccceeccCCCceecCCcCCCCCCCcceEEEeccC
Q psy14224 64 KKHSIRYVLEQNNMNWWQSPTLHQGPQYEYVTITLDMK 101 (150)
Q Consensus 64 ~~Hp~~~ltD~~~~TwWQS~~~~~g~~~~~VtItLdL~ 101 (150)
..|.+..|+|++..|+|||... +| .+.++|++.=+
T Consensus 12 n~~~~~~L~D~~~~tyWQSdG~-q~--pH~I~i~f~k~ 46 (131)
T cd08665 12 NPHRANKLTDGNPKTYWESNGS-TG--SHYINIHMHRG 46 (131)
T ss_pred CcccHHHhhcCCCCceEccCCC-CC--CeEEEEEECCC
Confidence 4688999999998999999942 23 36777765443
No 15
>cd08667 APC10-ZZEF1 APC10/DOC1-like domain of uncharacterized Zinc finger ZZ-type and EF-hand domain-containing protein 1 (ZZEF1) and homologs. This model represents the APC10/DOC1-like domain present in the uncharacterized Zinc finger ZZ-type and EF-hand domain-containing protein 1 (ZZEF1) of Mus musculus. Members of this family contain EF-hand, APC10, CUB, and zinc finger ZZ-type domains. ZZEF1-like APC10 domains are homologous to the APC10 subunit/DOC1 domains present in E3 ubiquitin ligases, which mediate substrate ubiquitination (or ubiquitylation), and are components of the ubiquitin-26S proteasome pathway for selective proteolytic degradation.
Probab=93.19 E-value=0.058 Score=40.71 Aligned_cols=48 Identities=15% Similarity=0.256 Sum_probs=30.5
Q ss_pred CCCccceeccCCCceecCCcCCCCCCCcceEEEeccCceeec-----------cCCCCCCeeee
Q psy14224 65 KHSIRYVLEQNNMNWWQSPTLHQGPQYEYVTITLDMKQVCPH-----------IDRRPSTIMCR 117 (150)
Q Consensus 65 ~Hp~~~ltD~~~~TwWQS~~~~~g~~~~~VtItLdL~~~f~~-----------~sprP~s~~ie 117 (150)
.+.++.|+|++..|+|||... ++ .+.++|. +.+.-.| .|.-|..+.|.
T Consensus 13 k~gv~~L~D~~~~TYWQSDG~-q~--pH~I~i~--f~~~v~i~~l~i~v~~~DeSYtPs~I~I~ 71 (131)
T cd08667 13 SADIDRMTDGETSTYWQSDGS-AR--SHWIRLK--MKPDVVLRHLSIAVAATDQSYMPQQVTVS 71 (131)
T ss_pred hhhhHHhhcCCCCccCccCCC-CC--CeEEEEE--ecCCeEEEEEEEEEcCCCCCcCCcEEEEE
Confidence 457999999999999999942 22 3555554 4433332 35566655543
No 16
>KOG3437|consensus
Probab=92.79 E-value=0.11 Score=41.18 Aligned_cols=62 Identities=21% Similarity=0.243 Sum_probs=40.9
Q ss_pred CCCccceeccCCCceecCCcCCCCCCCcceEEEeccCceee---c-------cCCCCCCeeeeEeecCCCCccccccccc
Q psy14224 65 KHSIRYVLEQNNMNWWQSPTLHQGPQYEYVTITLDMKQVCP---H-------IDRRPSTIMCRRYALEQNNMNWWQSPTL 134 (150)
Q Consensus 65 ~Hp~~~ltD~~~~TwWQS~~~~~g~~~~~VtItLdL~~~f~---~-------~sprP~s~~iers~d~G~tw~pwQ~~s~ 134 (150)
-||+.+|.|.+.+|+|||. |.+++.++|+++=...-+ | .|.-|....|.= |.+..-|++...
T Consensus 36 g~pvd~l~Ddn~etyWqSd----G~~PH~i~I~F~K~~~I~~v~if~~f~~DeSYtPs~i~I~~----G~g~~dl~~~~~ 107 (184)
T KOG3437|consen 36 GFPVDNLRDDNPETYWQSD----GSQPHLINIQFHKRVDIQYVVIFLDFKQDESYTPSKIKIRA----GNGFNDLWEIQS 107 (184)
T ss_pred CCChHHhhcCChhHheecC----CCCCeEEEEEEEeEEEEEEEEEEEEEecccccCceeEEEEe----cCChhheeeeeE
Confidence 4999999999999999998 566678888765332221 0 456666666432 444555655543
No 17
>PF02012 BNR: BNR/Asp-box repeat; InterPro: IPR002860 Members of this entry contain multiple BNR (bacterial neuraminidase repeat) repeats or Asp-boxes. The repeats are short, however the repeats are never found closer than 40 residues together suggesting that the repeat is structurally longer. These repeats are found in a variety of non-homologous proteins, including bacterial ribonucleases, sulphite oxidases, reelin, netrins, sialidases, neuraminidases, some lipoprotein receptors, and a variety of glycosyl hydrolases [].; PDB: 2JKB_A 2VW0_A 2VW2_A 2VW1_A 2CN2_D 2CN3_B 2VK7_B 2VK5_A 2VK6_A 2BF6_A ....
Probab=91.80 E-value=0.1 Score=23.93 Aligned_cols=12 Identities=0% Similarity=-0.360 Sum_probs=8.9
Q ss_pred eEeecCCCCccc
Q psy14224 117 RRYALEQNNMNW 128 (150)
Q Consensus 117 ers~d~G~tw~p 128 (150)
++|.|.|+||++
T Consensus 1 ~~S~D~G~TW~~ 12 (12)
T PF02012_consen 1 YYSTDGGKTWKK 12 (12)
T ss_dssp EEESSTTSS-EE
T ss_pred CEeCCCcccCcC
Confidence 468999999974
No 18
>COG5156 DOC1 Anaphase-promoting complex (APC), subunit 10 [Cell division and chromosome partitioning / Posttranslational modification, protein turnover, chaperones]
Probab=90.77 E-value=0.11 Score=40.82 Aligned_cols=39 Identities=23% Similarity=0.330 Sum_probs=30.1
Q ss_pred CCCCCccceeccCCCceecCCcCCCCCCCcceEEEeccCceeecc
Q psy14224 63 GKKHSIRYVLEQNNMNWWQSPTLHQGPQYEYVTITLDMKQVCPHI 107 (150)
Q Consensus 63 ~~~Hp~~~ltD~~~~TwWQS~~~~~g~~~~~VtItLdL~~~f~~~ 107 (150)
+..||+..+.|.+-.|+|||.. .| .-+|.|.+.++-.|+
T Consensus 38 K~g~p~r~~lddn~dtyWqsDg----~q--PH~i~I~F~kr~~I~ 76 (189)
T COG5156 38 KRGHPLRELLDDNMDTYWQSDG----VQ--PHSIQISFDKRRYIQ 76 (189)
T ss_pred ccCCcHHHHhhcchhhhhccCC----CC--CceEEEEEeEEEeee
Confidence 5679999999999899999994 43 346666777776653
No 19
>cd08159 APC10-like APC10-like DOC1 domains in E3 ubiquitin ligases that mediate substrate ubiquitination. This family contains the single domain protein, APC10, a subunit of the anaphase-promoting complex (APC), as well as the DOC1 domain of multi-domain proteins present in E3 ubiquitin ligases. E3 ubiquitin ligases mediate substrate ubiquitination (or ubiquitylation), a component of the ubiquitin-26S proteasome pathway for selective proteolytic degradation. The APC, a multi-protein complex (or cyclosome), is a cell cycle-regulated, E3 ubiquitin ligase that controls important transitions in mitosis and the G1 phase by ubiquitinating regulatory proteins, thereby targeting them for degradation. APC10-like DOC1 domains such as those present in HECT (Homologous to the E6-AP Carboxyl Terminus) and Cullin-RING (Really Interesting New Gene) E3 ubiquitin ligase proteins, HECTD3, and CUL7, respectively, are also included in this hierarchy. CUL7 is a member of the Cullin-RING ligase family and f
Probab=89.74 E-value=0.48 Score=35.65 Aligned_cols=18 Identities=22% Similarity=0.464 Sum_probs=16.8
Q ss_pred CccceeccCCCceecCCc
Q psy14224 67 SIRYVLEQNNMNWWQSPT 84 (150)
Q Consensus 67 p~~~ltD~~~~TwWQS~~ 84 (150)
++..|.|++..|+|||..
T Consensus 15 gv~~L~D~~~~tyWQSdG 32 (129)
T cd08159 15 PVSRLTDGNYDTYWQSDG 32 (129)
T ss_pred cHHHhcCCCCCccCCCCC
Confidence 899999999999999994
No 20
>cd08664 APC10-HERC2 APC10-like DOC1 domain present in HERC2 (HECT domain and RLD2). This model represents the APC10/DOC1 domain present in HERC2 (HECT domain and RLD2), a large multi-domain protein with three RCC1-like domains (RLDs), additional internal domains including a zinc finger ZZ-type and Cyt-b5 (Cytochrome b5-like Heme/Steroid binding) domains, and a C-terminal HECT (Homologous to the E6-AP Carboxyl Terminus) domain. The APC10/DOC1 domain of HERC2 is a homolog of the APC10 subunit and the DOC1 domain present in E3 ubiquitin ligases which mediate substrate ubiquitination (or ubiquitylation), a component of the ubiquitin-26S proteasome pathway for selective proteolytic degradation. As suggested by structural relationships between HERC2 and other proteins such as HERC1, the proposed role for HERC2 in protein trafficking and degradation pathways is consistent with observations that mutations in HERC2 lead to neuromuscular secretory vesicle and sperm acrosome defects, other develo
Probab=86.54 E-value=0.88 Score=35.25 Aligned_cols=34 Identities=18% Similarity=0.508 Sum_probs=25.2
Q ss_pred CCCCccceeccCCCceecCCcCCCCCCCcceEEEeccC
Q psy14224 64 KKHSIRYVLEQNNMNWWQSPTLHQGPQYEYVTITLDMK 101 (150)
Q Consensus 64 ~~Hp~~~ltD~~~~TwWQS~~~~~g~~~~~VtItLdL~ 101 (150)
..|.++.|+|+ ..|+|||.. .++. +.++|++.=+
T Consensus 36 ~~~~~~~L~D~-~~TYWQSdG-~q~~--HwI~l~~~~~ 69 (152)
T cd08664 36 NENQAKRLIDG-SGSYWQSSG-SQGK--HWIRLELHPD 69 (152)
T ss_pred CcccHHHhcCC-CCCeeccCC-CCCc--eEEEEEECCC
Confidence 46899999999 899999994 2232 5677765544
No 21
>KOG1836|consensus
Probab=84.18 E-value=0.85 Score=46.90 Aligned_cols=102 Identities=25% Similarity=0.412 Sum_probs=62.0
Q ss_pred CCCCCCcccccCCCceeeecccCCCCCCeeeeEeccCCCCCCCccccccCCCCCCCCCCCccce-eccCCCceecCCcCC
Q psy14224 8 PGLFPPIFNVASKSSIVVNATCGEVGGPEVYCKLKEHRGKADTQCSVCDASSSSPGKKHSIRYV-LEQNNMNWWQSPTLH 86 (150)
Q Consensus 8 ~~C~P~~~NlA~gr~i~assTCG~~~~~e~yC~~~~~~~~~~~~C~~Cda~~~~~~~~Hp~~~l-tD~~~~TwWQS~~~~ 86 (150)
..+.|+.+++.+........+|++- .+..|+.+. ..+.+|..- +..+- -..+
T Consensus 22 ~~~~p~~~~~~~~~~~r~q~~~pe~-~~aa~~~~~-------~~~~~cg~~--------~~~~c~~~~~----------- 74 (1705)
T KOG1836|consen 22 QSLFPQDINECYDQAGRQQASCPEF-ANAAGNLLA-------TETNTCGLK--------GGGYCVPCNC----------- 74 (1705)
T ss_pred cccCccccccccccCCccccccccc-ccccCCcce-------eEeccccCC--------CCCcCcccCC-----------
Confidence 5788999998888888889999986 666666542 233344322 11010 0000
Q ss_pred CCCCCcceEEEeccCceeeccC------CCCCCeeeeEeecCCCCcccccccccccCCCCCceeEEEeCC
Q psy14224 87 QGPQYEYVTITLDMKQVCPHID------RRPSTIMCRRYALEQNNMNWWQSPTLHQGPQYEYVTITLDMK 150 (150)
Q Consensus 87 ~g~~~~~VtItLdL~~~f~~~s------prP~s~~iers~d~G~tw~pwQ~~s~~~~~~y~~v~itl~~~ 150 (150)
.|.+ + +.+.+|. -+|++-.|. +...-+|||++++.+|.+|+.++|++||.
T Consensus 75 ~g~~--~--------~~C~~C~~ag~~~~h~~~~~id----~~~~~twwQS~~l~~g~q~~~~~~~~~~~ 130 (1705)
T KOG1836|consen 75 NGHS--N--------GYCVICNAAGEHCEHPASNLID----GAVGETWWQSPPLPEGHQYNFVTNLTDLL 130 (1705)
T ss_pred cCCC--C--------CcceeCCCCCcccccCHhhhcc----CCcCCccccCCCCCcccccchhhhhhhcC
Confidence 0111 1 3455543 234433322 22145899999999999999999999974
No 22
>PF06219 DUF1005: Protein of unknown function (DUF1005); InterPro: IPR010410 This is a family of plant proteins with undetermined function.
Probab=40.60 E-value=18 Score=32.58 Aligned_cols=24 Identities=13% Similarity=0.159 Sum_probs=18.2
Q ss_pred CCCCCeeeeEeecCCCCcccccccc
Q psy14224 109 RRPSTIMCRRYALEQNNMNWWQSPT 133 (150)
Q Consensus 109 prP~s~~iers~d~G~tw~pwQ~~s 133 (150)
..|++|.|.|-.-+| +|+||--.-
T Consensus 280 SNPGAWLILRP~~~g-sWkPWGRLE 303 (460)
T PF06219_consen 280 SNPGAWLILRPDGDG-SWKPWGRLE 303 (460)
T ss_pred cCCCeEEEEecCCCC-Ccccchhhh
Confidence 569999999943445 899997543
No 23
>smart00231 FA58C Coagulation factor 5/8 C-terminal domain, discoidin domain. Cell surface-attached carbohydrate-binding domain, present in eukaryotes and assumed to have horizontally transferred to eubacterial genomes.
Probab=28.34 E-value=47 Score=23.99 Aligned_cols=37 Identities=16% Similarity=0.187 Sum_probs=21.8
Q ss_pred eEEEeccCceeecc----CCC--CCCeeeeE--eecCCCCccccc
Q psy14224 94 VTITLDMKQVCPHI----DRR--PSTIMCRR--YALEQNNMNWWQ 130 (150)
Q Consensus 94 VtItLdL~~~f~~~----spr--P~s~~ier--s~d~G~tw~pwQ 130 (150)
--|+|||++.+.|. .++ -..++.+. .++||.+|.++.
T Consensus 45 ~wlqvDLg~~~~v~~i~~qg~~~~~~~~~~~~~~s~dg~~W~~~~ 89 (139)
T smart00231 45 PWIQVDLGRTRTVTGVITGGRHGDGDGVTYKLLYSDDGNNWTTYK 89 (139)
T ss_pred ceeEeeccCcEEEEEEEecccCCCCcEEEEEEEEEeCCCCEeEEe
Confidence 46888999887761 122 12333211 367888898874
No 24
>PF01834 XRCC1_N: XRCC1 N terminal domain; InterPro: IPR002706 DNA-repair protein Xrcc1 functions in the repair of single-strand DNA breaks in mammalian cells and forms a repair complex with beta-Pol, ligase III and PARP []. The NMR solution structure of the Xrcc1 N-terminal domain (Xrcc1 NTD) shows that the structural core is a beta-sandwich with beta-strands connected by loops, three helices and two short two-stranded beta-sheets at each connection side. The Xrcc1 NTD specifically binds single-strand break DNA (gapped and nicked) and a gapped DNA-beta-Pol complex [].; GO: 0003684 damaged DNA binding, 0000012 single strand break repair, 0005634 nucleus; PDB: 3K77_E 3K75_C 3LQC_A 1XNA_A 1XNT_A.
Probab=27.27 E-value=44 Score=25.94 Aligned_cols=38 Identities=13% Similarity=0.328 Sum_probs=23.5
Q ss_pred CCCCccceeccC-CCceecCCcCCCCCCCcceEEEeccCceeec
Q psy14224 64 KKHSIRYVLEQN-NMNWWQSPTLHQGPQYEYVTITLDMKQVCPH 106 (150)
Q Consensus 64 ~~Hp~~~ltD~~-~~TwWQS~~~~~g~~~~~VtItLdL~~~f~~ 106 (150)
..||+++|.+.+ ...|+-+.+ |. ..+.|-|.|++.-+|
T Consensus 17 ~~~~A~NLL~~d~~r~W~~~~~---ge--k~~~V~lQl~~~~~I 55 (153)
T PF01834_consen 17 PVHPAENLLKSDTYRKWKCAKA---GE--KQASVELQLEKASQI 55 (153)
T ss_dssp SSSHGGGGSCGGGCHHEEHSST---T---SEEEEEEEEEEEE--
T ss_pred CCCchhhccCcccCCcccccCC---CC--ceEEEEEEecCceEE
Confidence 479999999876 467775644 43 345555566655554
No 25
>cd02847 Chitobiase_C_term Chitobiase C-terminus domain. Chitobiase (AKA N-acetylglucosaminidase) digests the beta, 1-4 glycosidic bonds of the N-acetylglucosamine (NAG) oligomers found in chitin, an important structural element of fungal cell wall and arthropod exoskeletons. It is thought to proceed through an acid-base reaction mechanism, in which one protein carboxylate acts as catalytic acid, while the nucleophile is the polar acetamido group of the sugar in a substrate-assisted reaction with retention of the anomeric configuration. The C-terminus of chitobiase may be related to the immunoglobulin and/or fibronectin type III superfamilies. These domains are associated with different types of catalytic domains at either the N-terminal or C-terminal end and may be involved in homodimeric/tetrameric/dodecameric interactions. Members of this family include members of the alpha amylase family, sialidase, galactose oxidase, cellulase, cellulose, hyaluronate lyase, chitobiase, and chit
Probab=20.68 E-value=1.1e+02 Score=20.79 Aligned_cols=26 Identities=12% Similarity=0.005 Sum_probs=18.3
Q ss_pred ccCCCCCCeeeeEeecCCCCccccccc
Q psy14224 106 HIDRRPSTIMCRRYALEQNNMNWWQSP 132 (150)
Q Consensus 106 ~~sprP~s~~iers~d~G~tw~pwQ~~ 132 (150)
++.+.|+..+=+ +.|.|.+|++|+-+
T Consensus 26 ~n~~~pg~~i~Y-t~dgg~~w~~Y~~p 51 (78)
T cd02847 26 MNVSLPGLTLQY-STDGGKNWNIYDAA 51 (78)
T ss_pred EeccCCCcEEEE-EecCCccCeecccc
Confidence 456788866644 47778888887764
Done!