RPS-BLAST 2.2.26 [Sep-21-2011]

Database: CDD.v3.10 
           44,354 sequences; 10,937,602 total letters

Searching..................................................done

Query= psy14224
         (150 letters)



>gnl|CDD|215682 pfam00055, Laminin_N, Laminin N-terminal (Domain VI). 
          Length = 237

 Score = 88.0 bits (218), Expect = 4e-22
 Identities = 35/97 (36%), Positives = 53/97 (54%), Gaps = 5/97 (5%)

Query: 10  LFPPIFNVASKSSIVVNATCGEVGGPEVYCKLKEHRGKADTQCSVCDASSSSPGKKHSIR 69
            +P   N+A   ++   +TCG   GPE YC L   +   D +C +CD++S +P + H I 
Sbjct: 1   CYPATGNLAINRALSATSTCGL-HGPEPYCILSHLQP-RDKKCFLCDSNSPNPRESHPIS 58

Query: 70  YVLEQNN---MNWWQSPTLHQGPQYEYVTITLDMKQV 103
           ++ +  N     WWQS T+  G QY  VTITLD++  
Sbjct: 59  FLTDTFNPQDTTWWQSETMQNGVQYPNVTITLDLEAE 95


>gnl|CDD|214532 smart00136, LamNT, Laminin N-terminal domain (domain VI).
           N-terminal domain of laminins and laminin-related
           protein such as Unc-6/ netrins.
          Length = 238

 Score = 84.7 bits (210), Expect = 6e-21
 Identities = 36/97 (37%), Positives = 48/97 (49%), Gaps = 9/97 (9%)

Query: 9   GLFPPIFNVASKSSIVVNATCGEVGGPEVYCKLKEHRGKADTQCSVCDASSSSPGKKHSI 68
             +PP  N+A    +   +TCGE  GPE YCKL  H  +   +C  CDA +  P + H  
Sbjct: 6   SCYPPFVNLAFGREVTATSTCGE-PGPERYCKLVGHTEQ-GKKCDYCDARN--PRRSHPA 61

Query: 69  RYVL---EQNNMNWWQSPTLHQGPQYEYVTITLDMKQ 102
             +      NN  WWQS  L  GPQ   V +TLD+ +
Sbjct: 62  ENLTDGNNPNNPTWWQSEPLSNGPQ--NVNLTLDLGK 96


>gnl|CDD|236473 PRK09348, glyQ, glycyl-tRNA synthetase subunit alpha; Validated.
          Length = 283

 Score = 26.6 bits (60), Expect = 4.7
 Identities = 11/22 (50%), Positives = 14/22 (63%), Gaps = 5/22 (22%)

Query: 64  KKHSIRYVLEQNNMNWWQSPTL 85
            +H IR+V E N    W+SPTL
Sbjct: 107 LEHDIRFV-EDN----WESPTL 123


>gnl|CDD|223319 COG0241, HisB, Histidinol phosphatase and related phosphatases
           [Amino acid transport and metabolism].
          Length = 181

 Score = 26.5 bits (59), Expect = 5.3
 Identities = 9/36 (25%), Positives = 12/36 (33%), Gaps = 6/36 (16%)

Query: 96  ITLDMKQVCPH------IDRRPSTIMCRRYALEQNN 125
           + +D    CPH        R+P   M      E N 
Sbjct: 85  VKIDGILYCPHHPEDNCDCRKPKPGMLLSALKEYNI 120


>gnl|CDD|115835 pfam07206, Baculo_LEF-10, Baculovirus late expression factor 10
          (LEF-10).  This family consists of several Baculovirus
          specific late expression factor 10 (LEF-10) sequences.
          LEF-10 is thought to be a late expressed structural
          protein although its exact function is unknown.
          Length = 71

 Score = 24.9 bits (55), Expect = 6.1
 Identities = 15/49 (30%), Positives = 21/49 (42%), Gaps = 10/49 (20%)

Query: 14 IFNVASKSSIVVNATC-GEVGGPEVYCKLKEHRGKADTQCSVCDASSSS 61
          I NV  + S  V   C GE+   +            D Q +V D+SS+S
Sbjct: 28 ILNVVDQESGEVKPVCLGEIDSFQTD---------TDDQEAVSDSSSTS 67


  Database: CDD.v3.10
    Posted date:  Mar 20, 2013  7:55 AM
  Number of letters in database: 10,937,602
  Number of sequences in database:  44,354
  
Lambda     K      H
   0.318    0.132    0.427 

Gapped
Lambda     K      H
   0.267   0.0704    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 7,188,392
Number of extensions: 582636
Number of successful extensions: 389
Number of sequences better than 10.0: 1
Number of HSP's gapped: 383
Number of HSP's successfully gapped: 8
Length of query: 150
Length of database: 10,937,602
Length adjustment: 88
Effective length of query: 62
Effective length of database: 7,034,450
Effective search space: 436135900
Effective search space used: 436135900
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 54 (24.6 bits)