RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy14224
(150 letters)
>2y38_A Laminin subunit alpha-5; structural protein, cell adhesion,
basement membrane; HET: NAG; 2.90A {Mus musculus}
Length = 403
Score = 73.4 bits (179), Expect = 3e-16
Identities = 35/111 (31%), Positives = 49/111 (44%), Gaps = 19/111 (17%)
Query: 9 GLFPPIFNVASKSSIVVNATCGEVG--------GPEVYCKLKEHRGKADT--------QC 52
L PP FN+A + I +ATCGE ++YCKL C
Sbjct: 10 SLHPPYFNLAEGARITASATCGEEAPTRSVSRPTEDLYCKLVGGPVAGGDPAQTIQGQYC 69
Query: 53 SVCDASSSSPGKKHSIRYVLEQNNMNWWQSPTLHQGPQYEYVTITLDMKQV 103
+C A++ K H + + WWQSP L +G +Y V +TLD+ QV
Sbjct: 70 DICTAAN--SNKAHPVSNAI-DGTERWWQSPPLSRGLEYNEVNVTLDLGQV 117
>4aqt_A Laminin subunit gamma-1; cell adhesion; HET: NAG BMA; 3.20A {Mus
musculus}
Length = 375
Score = 72.5 bits (177), Expect = 4e-16
Identities = 26/100 (26%), Positives = 39/100 (39%), Gaps = 9/100 (9%)
Query: 9 GLFPPIFNVASKSSIVVNATCGEVGGPEVYCKLKEHRGKADTQCSVCDASSSSPGKKHSI 68
P N A ++V TCG PE YC C +CD + +H
Sbjct: 18 RCMPEFVNAAFNVTVVATNTCGT--PPEEYCVQ-TGVTGVTKSCHLCD--AGQQHLQHGA 72
Query: 69 RYVL---EQNNMNWWQSPTLHQGPQYEY-VTITLDMKQVC 104
++ Q + WWQS T+ G QY + +TL + +
Sbjct: 73 AFLTDYNNQADTTWWQSQTMLAGVQYPNSINLTLHLGKAF 112
>4aqs_A Laminin subunit beta-1; cell adhesion; HET: NAG BMA MAN FUL; 3.11A
{Mus musculus}
Length = 525
Score = 63.9 bits (155), Expect = 6e-13
Identities = 24/104 (23%), Positives = 40/104 (38%), Gaps = 18/104 (17%)
Query: 9 GLFPPIFNVAS--KSSIVVNATCGEVGGPEVYCKLKEHRGKADTQCSVCDASSSSPGKKH 66
+P ++ + V +TCG PE YC + + D +C +CD+ +
Sbjct: 17 SCYPATGDLLIGRAQKLSVTSTCGL-HKPEPYCIVSH--LQEDKKCFICDSRDPYHETLN 73
Query: 67 SIRYVLE--------QNNMNWWQSPTLHQGPQYEYVTITLDMKQ 102
+++E WWQS E VTI LD++
Sbjct: 74 PDSHLIENVVTTFAPNRLKIWWQSE-----NGVENVTIQLDLEA 112
>3tbd_A Netrin-G2, laminet-2; laminin N-terminal domain, domain VI,
LE-domain, N neuronal cell adhesion molecule, netrin G
ligand 2, nervous system; HET: NAG; 1.80A {Homo sapiens}
PDB: 3zyg_A* 3zyi_B*
Length = 338
Score = 62.6 bits (151), Expect = 2e-12
Identities = 23/100 (23%), Positives = 37/100 (37%), Gaps = 14/100 (14%)
Query: 9 GLFPPIFNVASKSSIVV---NATCGEVGGPEVYCKLKEHRGKADTQCSVCDASSSSPGKK 65
P + + + V TCG+ PE +C + + CD +S+P
Sbjct: 21 ACQPKVMRLKDYVKVKVEPSGITCGD--PPERFCSHEN----PYLCSNECD--ASNPDLA 72
Query: 66 HSIRYVL---EQNNMNWWQSPTLHQGPQYEYVTITLDMKQ 102
H R + E+ +WQS T + P ITL +
Sbjct: 73 HPPRLMFDKEEEGLATYWQSITWSRYPSPLEANITLSWNK 112
>3zyj_B Netrin-G1; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo
sapiens}
Length = 426
Score = 61.0 bits (147), Expect = 6e-12
Identities = 21/99 (21%), Positives = 39/99 (39%), Gaps = 14/99 (14%)
Query: 11 FPPIFNVASKSSIVV---NATCGEVGGPEVYCKLKEHRGKADTQCSVCDASSSSPGKKHS 67
P ++ + + + TCG+ PE +C + + CD +S+P H
Sbjct: 51 QPESTDMTKYLKVKLDPPDITCGD--PPETFCAMGNPYMC----NNECD--ASTPELAHP 102
Query: 68 IRYVLEQNNMN---WWQSPTLHQGPQYEYVTITLDMKQV 103
+ + + +WQS T + P+ V ITL +
Sbjct: 103 PELMFDFEGRHPSTFWQSATWKEYPKPLQVNITLSWSKT 141
>1kjw_A Postsynaptic density protein 95; protein-protein interaction,
scaffold, neuropeptide; 1.80A {Rattus norvegicus} SCOP:
b.34.2.1 c.37.1.1 PDB: 1jxm_A* 1jxo_A
Length = 295
Score = 30.5 bits (69), Expect = 0.18
Identities = 17/86 (19%), Positives = 29/86 (33%), Gaps = 18/86 (20%)
Query: 64 KKHSIRYVLEQNNMNWWQSPTLHQGPQYEYVTITLDMKQVCPHIDRRPSTIMCRRYALEQ 123
+ + +V++ + WWQ+ +H + I PS R +
Sbjct: 26 RFGDVLHVIDAGDEEWWQARRVHSDSE-------------TDDIGFIPSKRRVERREWSR 72
Query: 124 NNMNWWQSPTLHQGPQ-----YEYVT 144
W S + QG + YE VT
Sbjct: 73 LKAKDWGSSSGSQGREDSVLSYETVT 98
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna;
HET: CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 28.0 bits (61), Expect = 0.80
Identities = 6/28 (21%), Positives = 10/28 (35%), Gaps = 7/28 (25%)
Query: 1 FTNELKVPGLFPPIFNVASKSSIVVNAT 28
LK L+ S ++ + AT
Sbjct: 25 LQASLK---LYAD----DSAPALAIKAT 45
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 27.7 bits (61), Expect = 2.0
Identities = 28/161 (17%), Positives = 45/161 (27%), Gaps = 71/161 (44%)
Query: 4 ELKVPGLFPPIFNVA--SKSSIVVNATCGE------VGG---PEVYCKLKEHRGKADTQC 52
+LK GL P A S GE + E ++ +RG
Sbjct: 1746 DLKSKGLIPADATFAGHS---------LGEYAALASLADVMSIESLVEVVFYRGMTMQVA 1796
Query: 53 SVCDASSSS--------PGK------KHSIRYVLEQN-----------NMNWWQSPTLHQ 87
D S PG+ + +++YV+E+ N N
Sbjct: 1797 VPRDELGRSNYGMIAINPGRVAASFSQEALQYVVERVGKRTGWLVEIVNYN---VE---- 1849
Query: 88 GPQY---------EYVTITLD-MK---------QVCPHIDR 109
QY + VT L+ +K Q ++
Sbjct: 1850 NQQYVAAGDLRALDTVTNVLNFIKLQKIDIIELQKSLSLEE 1890
>3qwy_A Cell death abnormality protein 2; cell engulfment, signaling
protein; 2.52A {Caenorhabditis elegans}
Length = 308
Score = 26.3 bits (57), Expect = 4.4
Identities = 14/80 (17%), Positives = 28/80 (35%), Gaps = 5/80 (6%)
Query: 64 KKHSIRYVLEQNNMNWW--QSPTLHQG--PQYEYVTITLDMKQVCPHIDRRPSTIMCRRY 119
++ +L + N +WW ++ G P YV I ++ S+I
Sbjct: 167 EQGERLEILSKTNQDWWEARNALGTTGLVPA-NYVQIQMEFHNDRTSKGASQSSIGSSGG 225
Query: 120 ALEQNNMNWWQSPTLHQGPQ 139
E+ + S + P+
Sbjct: 226 GAERFSSASTSSDNIELQPR 245
>3tvt_A Disks large 1 tumor suppressor protein; DLG, SRC-homology-3,
guanylate kinase, phosphorylation-depen cell membrane;
1.60A {Drosophila melanogaster} PDB: 3uat_A*
Length = 292
Score = 26.3 bits (58), Expect = 5.1
Identities = 14/81 (17%), Positives = 23/81 (28%), Gaps = 17/81 (20%)
Query: 64 KKHSIRYVLEQNNMNWWQSPTLHQGPQYEYVTITLDMKQVCPHIDRRPSTIMCRRYALEQ 123
K I +V ++ WWQ+ + + E + I PS R +
Sbjct: 30 KHGDILHVTNASDDEWWQARRVLGDNEDEQIGI-------------VPSKRRWER----K 72
Query: 124 NNMNWWQSPTLHQGPQYEYVT 144
+ YE V
Sbjct: 73 MRARDRSVKSEENVLSYEAVQ 93
>1zlm_A Osteoclast stimulating factor 1; beta barrel, signaling protein;
1.07A {Homo sapiens}
Length = 58
Score = 24.4 bits (54), Expect = 5.5
Identities = 5/18 (27%), Positives = 12/18 (66%)
Query: 64 KKHSIRYVLEQNNMNWWQ 81
++ I Y+ + ++ NWW+
Sbjct: 23 EEGDIIYITDMSDTNWWK 40
>1wii_A Hypothetical UPF0222 protein MGC4549; domain of unknown function,
zinc finger, metal-binding protein, structural
genomics; NMR {Mus musculus} SCOP: g.41.3.4
Length = 85
Score = 24.6 bits (53), Expect = 7.8
Identities = 6/26 (23%), Positives = 9/26 (34%)
Query: 37 VYCKLKEHRGKADTQCSVCDASSSSP 62
K+ R C+VC +P
Sbjct: 35 CDVKMDRARNTGVISCTVCLEEFQTP 60
>2xkx_A Disks large homolog 4; structural protein, scaffold protein,
membrane associated GU kinase; 22.9A {Rattus norvegicus}
Length = 721
Score = 25.6 bits (55), Expect = 8.2
Identities = 11/92 (11%), Positives = 30/92 (32%), Gaps = 1/92 (1%)
Query: 57 ASSSSPGKKHSIRYVLEQNNMNWWQSPTLHQGPQYEYV-TITLDMKQVCPHIDRRPSTIM 115
S + + + +V++ + WWQ+ +H + + + I + R +
Sbjct: 445 LSQALSFRFGDVLHVIDAGDEEWWQARRVHSDSETDDIGFIPSKRRVERREWSRLKAKDW 504
Query: 116 CRRYALEQNNMNWWQSPTLHQGPQYEYVTITL 147
+ + T+ Q + I +
Sbjct: 505 GSSSGSQGREDSVLSYETVTQMEVHYARPIII 536
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.318 0.132 0.427
Gapped
Lambda K H
0.267 0.0503 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 2,254,379
Number of extensions: 115276
Number of successful extensions: 289
Number of sequences better than 10.0: 1
Number of HSP's gapped: 277
Number of HSP's successfully gapped: 21
Length of query: 150
Length of database: 6,701,793
Length adjustment: 85
Effective length of query: 65
Effective length of database: 4,328,508
Effective search space: 281353020
Effective search space used: 281353020
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 53 (24.7 bits)